Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70457.t1 | XP_003601538.1 | 97.4 | 548 | 13 | 1 | 149 | 695 | 18 | 565 | 5.00E-305 | 1056.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70457.t1 | Q75LL6 | 52.8 | 547 | 243 | 7 | 151 | 689 | 18 | 557 | 2.5e-151 | 537.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70457.t1 | G7J8V8 | 97.4 | 548 | 13 | 1 | 149 | 695 | 18 | 565 | 3.6e-305 | 1056.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene70457.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene70457 | 0.811491 | 6.82E-51 | -1.69E-46 |
| MS.gene049230 | MS.gene70457 | 0.809431 | 1.90E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene70457 | 0.800383 | 1.48E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene70457 | -0.83426 | 3.32E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene70457 | 0.823294 | 1.50E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene70457 | 0.825525 | 4.47E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene70457 | 0.824123 | 9.57E-54 | -1.69E-46 |
| MS.gene050780 | MS.gene70457 | 0.810882 | 9.24E-51 | -1.69E-46 |
| MS.gene051452 | MS.gene70457 | 0.810012 | 1.42E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene70457 | 0.825099 | 5.64E-54 | -1.69E-46 |
| MS.gene052286 | MS.gene70457 | 0.801324 | 9.50E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene70457 | 0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene70457 | 0.822094 | 2.85E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene70457 | 0.815574 | 8.62E-52 | -1.69E-46 |
| MS.gene056552 | MS.gene70457 | 0.822061 | 2.90E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene70457 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene70457 | 0.80024 | 1.58E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene70457 | 0.842358 | 2.72E-58 | -1.69E-46 |
| MS.gene058146 | MS.gene70457 | 0.800517 | 1.39E-48 | -1.69E-46 |
| MS.gene058238 | MS.gene70457 | 0.800178 | 1.63E-48 | -1.69E-46 |
| MS.gene058399 | MS.gene70457 | 0.814594 | 1.42E-51 | -1.69E-46 |
| MS.gene059249 | MS.gene70457 | 0.827919 | 1.20E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene70457 | 0.802322 | 5.93E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene70457 | 0.813821 | 2.11E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene70457 | 0.814462 | 1.52E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene70457 | 0.806334 | 8.65E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene70457 | 0.806676 | 7.33E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene70457 | 0.806479 | 8.06E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene70457 | 0.819412 | 1.18E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene70457 | 0.809114 | 2.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70457.t1 | MTR_3g082790 | 97.445 | 548 | 13 | 1 | 149 | 695 | 18 | 565 | 0.0 | 1103 |
| MS.gene70457.t1 | MTR_3g082790 | 97.524 | 525 | 12 | 1 | 172 | 695 | 1 | 525 | 0.0 | 1062 |
| MS.gene70457.t1 | MTR_3g081360 | 78.245 | 547 | 79 | 4 | 150 | 693 | 3 | 512 | 0.0 | 857 |
| MS.gene70457.t1 | MTR_2g026310 | 51.892 | 555 | 229 | 8 | 151 | 691 | 18 | 548 | 0.0 | 546 |
| MS.gene70457.t1 | MTR_7g063290 | 46.568 | 539 | 215 | 5 | 152 | 690 | 18 | 483 | 3.42e-149 | 442 |
| MS.gene70457.t1 | MTR_2g026380 | 45.221 | 544 | 225 | 8 | 152 | 691 | 18 | 492 | 2.59e-143 | 428 |
| MS.gene70457.t1 | MTR_3g081380 | 73.099 | 171 | 43 | 2 | 150 | 318 | 14 | 183 | 2.40e-85 | 266 |
| MS.gene70457.t1 | MTR_3g081420 | 37.885 | 227 | 117 | 3 | 467 | 691 | 2 | 206 | 2.21e-39 | 144 |
| MS.gene70457.t1 | MTR_3g081390 | 49.701 | 167 | 41 | 3 | 148 | 314 | 3 | 126 | 2.79e-36 | 132 |
| MS.gene70457.t1 | MTR_7g062030 | 66.667 | 78 | 25 | 1 | 153 | 230 | 33 | 109 | 3.87e-26 | 104 |
| MS.gene70457.t1 | MTR_7g451720 | 44.755 | 143 | 50 | 6 | 135 | 273 | 46 | 163 | 1.43e-14 | 72.8 |
| MS.gene70457.t1 | MTR_3g088480 | 37.000 | 100 | 60 | 3 | 183 | 281 | 338 | 435 | 1.22e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70457.t1 | AT3G07740 | 52.468 | 547 | 233 | 8 | 151 | 691 | 19 | 544 | 0.0 | 537 |
| MS.gene70457.t1 | AT3G07740 | 51.805 | 554 | 233 | 9 | 151 | 691 | 19 | 551 | 0.0 | 531 |
| MS.gene70457.t1 | AT3G07740 | 53.030 | 528 | 219 | 8 | 172 | 691 | 17 | 523 | 0.0 | 526 |
| MS.gene70457.t1 | AT4G16420 | 49.541 | 545 | 194 | 7 | 151 | 693 | 17 | 482 | 7.87e-178 | 516 |
| MS.gene70457.t1 | AT4G16420 | 49.267 | 546 | 198 | 8 | 151 | 693 | 17 | 486 | 8.01e-176 | 511 |
| MS.gene70457.t1 | AT4G16420 | 49.084 | 546 | 198 | 8 | 151 | 693 | 17 | 485 | 5.89e-175 | 508 |
| MS.gene70457.t1 | AT3G07740 | 52.738 | 493 | 207 | 7 | 204 | 691 | 2 | 473 | 4.71e-166 | 485 |
| MS.gene70457.t1 | AT4G34430 | 31.579 | 190 | 114 | 6 | 176 | 352 | 302 | 488 | 3.27e-11 | 67.4 |
| MS.gene70457.t1 | AT4G34430 | 31.579 | 190 | 114 | 6 | 176 | 352 | 302 | 488 | 3.41e-11 | 67.4 |
| MS.gene70457.t1 | AT4G34430 | 31.579 | 190 | 114 | 6 | 176 | 352 | 302 | 488 | 3.44e-11 | 67.4 |
| MS.gene70457.t1 | AT4G34430 | 31.579 | 190 | 114 | 6 | 176 | 352 | 302 | 488 | 3.44e-11 | 67.4 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCAACAATTCATGATTTC+AGG | 0.168715 | 3.1:+66511162 | MS.gene70457:CDS |
| TGGATATGCATCAGATTTAT+TGG | 0.206249 | 3.1:-66518953 | None:intergenic |
| CAAAAGAATACAAGACTTAA+AGG | 0.237764 | 3.1:+66517678 | MS.gene70457:CDS |
| CTATATTCCCCAGATAATTT+AGG | 0.244656 | 3.1:-66516969 | None:intergenic |
| CTTTAAGTCTTGTATTCTTT+TGG | 0.246239 | 3.1:-66517677 | None:intergenic |
| GCCCTTGACATGTATGGATT+TGG | 0.247889 | 3.1:+66513327 | MS.gene70457:CDS |
| GAAAAGAAACCTAAATTATC+TGG | 0.248531 | 3.1:+66516960 | MS.gene70457:CDS |
| CCTTAACTCCATCATTATTC+TGG | 0.272285 | 3.1:-66515242 | None:intergenic |
| TCACATATTTGAAGCTCTTC+AGG | 0.283060 | 3.1:-66517571 | None:intergenic |
| TACTGCAACAAAGATATTTC+AGG | 0.283715 | 3.1:+66512871 | MS.gene70457:CDS |
| TATGACATGCTTGTGGAAAA+AGG | 0.285605 | 3.1:+66519012 | MS.gene70457:CDS |
| CTAAATTATCTGGGGAATAT+AGG | 0.294662 | 3.1:+66516970 | MS.gene70457:CDS |
| CCTAGACATTGTTTGATTAG+TGG | 0.301162 | 3.1:-66515066 | None:intergenic |
| TTCAGAGTCAGCTCTGCATT+TGG | 0.311067 | 3.1:-66514911 | None:intergenic |
| TATCTAGCCAATCTGGAAAA+TGG | 0.314631 | 3.1:-66509164 | None:intergenic |
| ACATGTATGGATTTGGGAAT+TGG | 0.314921 | 3.1:+66513334 | MS.gene70457:CDS |
| CCATCATGCATTCGATTTCA+TGG | 0.316850 | 3.1:-66509083 | None:intergenic |
| CAAGGTGACTGTAAAGAAAA+TGG | 0.338873 | 3.1:+66518395 | MS.gene70457:CDS |
| TGCTCCGTATTTACTCAAAA+AGG | 0.340521 | 3.1:+66517135 | MS.gene70457:CDS |
| CCCTTGACATGTATGGATTT+GGG | 0.361167 | 3.1:+66513328 | MS.gene70457:CDS |
| ATGATGCTGTAGTGCCCTTA+TGG | 0.365256 | 3.1:-66518496 | None:intergenic |
| CAATGATGCTGAGCAAGTTT+TGG | 0.365626 | 3.1:+66517055 | MS.gene70457:CDS |
| TCTTCCTCTGCACTCCAATC+TGG | 0.370485 | 3.1:-66513156 | None:intergenic |
| CAATCATCCGTATCGGGTTA+TGG | 0.379198 | 3.1:+66512984 | MS.gene70457:CDS |
| TGACCAGGGTCGGAAAGAAC+TGG | 0.391619 | 3.1:+66509115 | MS.gene70457:CDS |
| GACCTCAAGTTTGTCAGAAC+GGG | 0.396961 | 3.1:-66509228 | None:intergenic |
| GATTATGCAATTAGAAATTT+CGG | 0.398926 | 3.1:+66518918 | MS.gene70457:CDS |
| GGTGAGAGATATTTCTCAAA+AGG | 0.412382 | 3.1:-66517550 | None:intergenic |
| TTGCAGGAAGCTAGAATTGC+TGG | 0.412554 | 3.1:+66518311 | MS.gene70457:intron |
| GCCGGCGCATCCTTGATATC+AGG | 0.414004 | 3.1:-66518521 | None:intergenic |
| TTGTGATTATCTAGCCAATC+TGG | 0.414340 | 3.1:-66509171 | None:intergenic |
| CCAGAATAATGATGGAGTTA+AGG | 0.420264 | 3.1:+66515242 | MS.gene70457:CDS |
| ATCAGTTTATTGAACAAAAG+AGG | 0.421769 | 3.1:+66518357 | MS.gene70457:CDS |
| GGAGGAACAACTTCAGCATT+CGG | 0.433120 | 3.1:-66509282 | None:intergenic |
| GCTACTACCAAGCTCTACTT+TGG | 0.434719 | 3.1:-66518462 | None:intergenic |
| GAGATATTTCTCAAAAGGAT+TGG | 0.435153 | 3.1:-66517545 | None:intergenic |
| TGTAAAGAAAATGGTCAGAT+TGG | 0.437324 | 3.1:+66518404 | MS.gene70457:CDS |
| CGCAAGGACACTAGAAGAAT+GGG | 0.447327 | 3.1:+66518559 | MS.gene70457:CDS |
| ATCGAATGCATGATGGTTCT+AGG | 0.451440 | 3.1:+66509090 | MS.gene70457:CDS |
| AGATATTTCTCAAAAGGATT+GGG | 0.455350 | 3.1:-66517544 | None:intergenic |
| TAAATTCTATCAATCTTGCT+TGG | 0.458223 | 3.1:-66518991 | None:intergenic |
| TTCCGCTTATATGTCCAGAT+TGG | 0.463921 | 3.1:+66513142 | MS.gene70457:CDS |
| TGTTGTTCTTCATTCATAAG+AGG | 0.466681 | 3.1:-66509402 | None:intergenic |
| CCACTCAACACTTTCATAGA+AGG | 0.473437 | 3.1:-66516993 | None:intergenic |
| AGCATCATTTCCTGATATCA+AGG | 0.475853 | 3.1:+66518511 | MS.gene70457:CDS |
| AAAAGAAACCTAAATTATCT+GGG | 0.477686 | 3.1:+66516961 | MS.gene70457:CDS |
| TTCGGGAGTGCGTATTTCGT+TGG | 0.479792 | 3.1:-66509264 | None:intergenic |
| GAGGAACAACTTCAGCATTC+GGG | 0.481181 | 3.1:-66509281 | None:intergenic |
| TCGCAAGGACACTAGAAGAA+TGG | 0.484815 | 3.1:+66518558 | MS.gene70457:CDS |
| GACTTGATTTCCCTTTGCCA+TGG | 0.486611 | 3.1:-66513589 | None:intergenic |
| AGAGTCAGCTCTGCATTTGG+AGG | 0.489977 | 3.1:-66514908 | None:intergenic |
| TCTTTCAAGTTCAATCAAGA+AGG | 0.495439 | 3.1:+66515206 | MS.gene70457:CDS |
| TAAAAGCAATCATCCGTATC+GGG | 0.498853 | 3.1:+66512978 | MS.gene70457:CDS |
| GAACTCCTTGCCATGGCAAA+GGG | 0.499938 | 3.1:+66513579 | MS.gene70457:CDS |
| ACTGCAACAAAGATATTTCA+GGG | 0.505834 | 3.1:+66512872 | MS.gene70457:CDS |
| TCAAATAGACTTACAGGTAC+AGG | 0.507290 | 3.1:-66513444 | None:intergenic |
| AGCCCAGTTCTTTCCGACCC+TGG | 0.508368 | 3.1:-66509118 | None:intergenic |
| TAGCCCGCGCGGTATCCATA+AGG | 0.509942 | 3.1:+66518481 | MS.gene70457:CDS |
| TCCCAAATCCATACATGTCA+AGG | 0.513442 | 3.1:-66513329 | None:intergenic |
| AACTGGGCTCTTATGAAGAC+TGG | 0.516450 | 3.1:+66509132 | MS.gene70457:CDS |
| TTAGAAACTTCATCTGCAGC+AGG | 0.517986 | 3.1:+66512731 | MS.gene70457:CDS |
| TGCATTGAGTGCTTCTCTGT+CGG | 0.520843 | 3.1:+66512937 | MS.gene70457:CDS |
| TGAGGGACTTCTTCATTCAC+AGG | 0.523511 | 3.1:-66509303 | None:intergenic |
| GGAAGAGATGTTACTTCTTG+AGG | 0.526186 | 3.1:+66513173 | MS.gene70457:CDS |
| TCCTGATATCAAGGATGCGC+CGG | 0.526937 | 3.1:+66518520 | MS.gene70457:CDS |
| CATCATGCATTCGATTTCAT+GGG | 0.527641 | 3.1:-66509082 | None:intergenic |
| CCACTAATCAAACAATGTCT+AGG | 0.527975 | 3.1:+66515066 | MS.gene70457:CDS |
| ATCATTATTCTGGCTCACAT+TGG | 0.528554 | 3.1:-66515232 | None:intergenic |
| GAAGAACAACAGCAAAATGA+TGG | 0.528978 | 3.1:+66509414 | MS.gene70457:CDS |
| TGATGGTAGTGGAAAGGCTA+AGG | 0.532341 | 3.1:+66509431 | MS.gene70457:CDS |
| AGCCCGCGCGGTATCCATAA+GGG | 0.533280 | 3.1:+66518482 | MS.gene70457:CDS |
| TGATGGTTCTAGGTGTGACC+AGG | 0.533699 | 3.1:+66509100 | MS.gene70457:CDS |
| GATTTCCCTTTGCCATGGCA+AGG | 0.533849 | 3.1:-66513584 | None:intergenic |
| TGTCCTTGCGATATCTTGTA+TGG | 0.534456 | 3.1:-66518546 | None:intergenic |
| CAACAGCAAAATGATGGTAG+TGG | 0.536951 | 3.1:+66509420 | MS.gene70457:CDS |
| GGAACTCCTTGCCATGGCAA+AGG | 0.537689 | 3.1:+66513578 | MS.gene70457:CDS |
| ACCTCTTCATTCACAACATG+AGG | 0.539847 | 3.1:-66509336 | None:intergenic |
| ATAAAAGCAATCATCCGTAT+CGG | 0.541422 | 3.1:+66512977 | MS.gene70457:CDS |
| CTTGGAGAGAACTTGAACAG+TGG | 0.542544 | 3.1:-66518973 | None:intergenic |
| CAGCTCTGAAGAATCTAAGA+AGG | 0.544590 | 3.1:+66515037 | MS.gene70457:intron |
| AATGTGAGCCAGAATAATGA+TGG | 0.544819 | 3.1:+66515234 | MS.gene70457:CDS |
| GTTCTGACAAACTTGAGGTC+GGG | 0.546748 | 3.1:+66509231 | MS.gene70457:CDS |
| AATTCTTCATTCACGACAAG+AGG | 0.548346 | 3.1:-66509375 | None:intergenic |
| AATCTGGAAAATGGAGGGTG+GGG | 0.549222 | 3.1:-66509155 | None:intergenic |
| CTTCTATGAAAGTGTTGAGT+GGG | 0.555328 | 3.1:+66516994 | MS.gene70457:CDS |
| GCGATATCTTGTATGGCAGC+CGG | 0.560280 | 3.1:-66518539 | None:intergenic |
| GACCAGGGTCGGAAAGAACT+GGG | 0.562098 | 3.1:+66509116 | MS.gene70457:CDS |
| AATGGTCAGATTGGAACAAG+TGG | 0.563482 | 3.1:+66518413 | MS.gene70457:CDS |
| ACATGAGGGTTCACAAGATG+AGG | 0.564408 | 3.1:-66509321 | None:intergenic |
| CGACCTCAAGTTTGTCAGAA+CGG | 0.565929 | 3.1:-66509229 | None:intergenic |
| TGTTCTTCATTCATAAGAGG+AGG | 0.569414 | 3.1:-66509399 | None:intergenic |
| GTGCGTATTTCGTTGGAACA+AGG | 0.569511 | 3.1:-66509257 | None:intergenic |
| CAATCTGGAAAATGGAGGGT+GGG | 0.573280 | 3.1:-66509156 | None:intergenic |
| TCACATATACAGTATTATAG+TGG | 0.573431 | 3.1:-66513407 | None:intergenic |
| TCTCAAGCAGGTCGGAGCAT+CGG | 0.574038 | 3.1:+66516936 | MS.gene70457:CDS |
| CGCGTAATGTTGAGGTAGTG+TGG | 0.574177 | 3.1:-66518895 | None:intergenic |
| TAGAATTTATGACATGCTTG+TGG | 0.575676 | 3.1:+66519005 | MS.gene70457:CDS |
| TTGTTAGTAGAATCTCAAGC+AGG | 0.576918 | 3.1:+66516924 | MS.gene70457:intron |
| CTTACAGGTACAGGAAAACA+TGG | 0.577655 | 3.1:-66513435 | None:intergenic |
| GTTCTTCATTCATAAGAGGA+GGG | 0.580249 | 3.1:-66509398 | None:intergenic |
| CCATGAAATCGAATGCATGA+TGG | 0.582148 | 3.1:+66509083 | MS.gene70457:CDS |
| AATGATGGAGTTAAGGTGGA+AGG | 0.584215 | 3.1:+66515249 | MS.gene70457:CDS |
| GAATAATGATGGAGTTAAGG+TGG | 0.585712 | 3.1:+66515245 | MS.gene70457:CDS |
| CTAGCCAATCTGGAAAATGG+AGG | 0.591550 | 3.1:-66509161 | None:intergenic |
| TCAAATATGTGAAAAGTACA+AGG | 0.591825 | 3.1:+66517582 | MS.gene70457:CDS |
| AATGATGTTGCAGACAACAT+TGG | 0.592297 | 3.1:+66513357 | MS.gene70457:CDS |
| GTTCATACCATAACCCGATA+CGG | 0.593072 | 3.1:-66512991 | None:intergenic |
| GCAGGAATTGGAATAACTGA+TGG | 0.599798 | 3.1:+66512823 | MS.gene70457:intron |
| GCAAAATGATGGTAGTGGAA+AGG | 0.600376 | 3.1:+66509425 | MS.gene70457:CDS |
| GTTCTAGGTGTGACCAGGGT+CGG | 0.602673 | 3.1:+66509105 | MS.gene70457:CDS |
| TTTATTCCATCAGAAAAGAG+AGG | 0.602975 | 3.1:-66514941 | None:intergenic |
| GCATAATCCGCGTAATGTTG+AGG | 0.604131 | 3.1:-66518903 | None:intergenic |
| CGTTCTGACAAACTTGAGGT+CGG | 0.604180 | 3.1:+66509230 | MS.gene70457:CDS |
| TAGCCAATCTGGAAAATGGA+GGG | 0.608971 | 3.1:-66509160 | None:intergenic |
| CACACTACCTCAACATTACG+CGG | 0.609087 | 3.1:+66518896 | MS.gene70457:CDS |
| CAAAGAGGAACTCCTTGCCA+TGG | 0.618565 | 3.1:+66513572 | MS.gene70457:CDS |
| CCCAAATCCATACATGTCAA+GGG | 0.618928 | 3.1:-66513328 | None:intergenic |
| CTGCCATACAAGATATCGCA+AGG | 0.619678 | 3.1:+66518543 | MS.gene70457:CDS |
| ATTCTTCATTCACGACAAGA+GGG | 0.629562 | 3.1:-66509374 | None:intergenic |
| TGCCCTTATGGATACCGCGC+GGG | 0.630704 | 3.1:-66518484 | None:intergenic |
| CCAATCTGGAAAATGGAGGG+TGG | 0.632935 | 3.1:-66509157 | None:intergenic |
| AGTGGGTACAATTCTAAGAG+AGG | 0.633103 | 3.1:+66517011 | MS.gene70457:CDS |
| TATGCAATTAGAAATTTCGG+AGG | 0.635449 | 3.1:+66518921 | MS.gene70457:CDS |
| ATGGTCAGATTGGAACAAGT+GGG | 0.637877 | 3.1:+66518414 | MS.gene70457:CDS |
| AGGACAAAAGAAGCTGAACA+AGG | 0.641573 | 3.1:+66518377 | MS.gene70457:CDS |
| ATGTCCAGATTGGAGTGCAG+AGG | 0.642688 | 3.1:+66513152 | MS.gene70457:CDS |
| CCTTCTATGAAAGTGTTGAG+TGG | 0.642901 | 3.1:+66516993 | MS.gene70457:CDS |
| ACCCCGTTCTGACAAACTTG+AGG | 0.645014 | 3.1:+66509226 | MS.gene70457:CDS |
| ACAATGTCTAGGCTAACCTC+AGG | 0.651755 | 3.1:+66515077 | MS.gene70457:CDS |
| CATGAGGGTTCACAAGATGA+GGG | 0.653028 | 3.1:-66509320 | None:intergenic |
| CCTCTTCATTCACAACATGA+GGG | 0.656287 | 3.1:-66509335 | None:intergenic |
| CTCCAATCTGGACATATAAG+CGG | 0.659538 | 3.1:-66513144 | None:intergenic |
| CCCTCATGTTGTGAATGAAG+AGG | 0.665367 | 3.1:+66509335 | MS.gene70457:CDS |
| GAGATCAAAATCTTGACACA+CGG | 0.665618 | 3.1:-66512914 | None:intergenic |
| AAAGAAACCTAAATTATCTG+GGG | 0.667221 | 3.1:+66516962 | MS.gene70457:CDS |
| TAGTAGAATCTCAAGCAGGT+CGG | 0.674109 | 3.1:+66516928 | MS.gene70457:intron |
| GGGACTTCTTCATTCACAGG+AGG | 0.682496 | 3.1:-66509300 | None:intergenic |
| GATGGTTCTAGGTGTGACCA+GGG | 0.687543 | 3.1:+66509101 | MS.gene70457:CDS |
| AAAATGGTCATGGATGCGGA+AGG | 0.690327 | 3.1:+66509203 | MS.gene70457:CDS |
| ACCTCAAGTTTGTCAGAACG+GGG | 0.695370 | 3.1:-66509227 | None:intergenic |
| ATGCAATTAGAAATTTCGGA+GGG | 0.695473 | 3.1:+66518922 | MS.gene70457:CDS |
| GTGCCCTTATGGATACCGCG+CGG | 0.719187 | 3.1:-66518485 | None:intergenic |
| TCACTCAAAAGAAGAGCACG+AGG | 0.725147 | 3.1:+66517618 | MS.gene70457:CDS |
| GTAATGTTGAGGTAGTGTGG+CGG | 0.745009 | 3.1:-66518892 | None:intergenic |
| AAAAGTACAAGGTCTTCACG+CGG | 0.746232 | 3.1:+66517593 | MS.gene70457:CDS |
| GAGCTTGGTAGTAGCCCGCG+CGG | 0.796024 | 3.1:+66518470 | MS.gene70457:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 66509063 | 66519053 | 66509063 | ID=MS.gene70457 |
| chr3.1 | mRNA | 66509063 | 66519053 | 66509063 | ID=MS.gene70457.t1;Parent=MS.gene70457 |
| chr3.1 | exon | 66509063 | 66509452 | 66509063 | ID=MS.gene70457.t1.exon1;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66509063 | 66509452 | 66509063 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66511122 | 66511183 | 66511122 | ID=MS.gene70457.t1.exon2;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66511122 | 66511183 | 66511122 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66512694 | 66512752 | 66512694 | ID=MS.gene70457.t1.exon3;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66512694 | 66512752 | 66512694 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66512827 | 66513005 | 66512827 | ID=MS.gene70457.t1.exon4;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66512827 | 66513005 | 66512827 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66513129 | 66513194 | 66513129 | ID=MS.gene70457.t1.exon5;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66513129 | 66513194 | 66513129 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66513327 | 66513452 | 66513327 | ID=MS.gene70457.t1.exon6;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66513327 | 66513452 | 66513327 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66513546 | 66513618 | 66513546 | ID=MS.gene70457.t1.exon7;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66513546 | 66513618 | 66513546 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66514903 | 66514963 | 66514903 | ID=MS.gene70457.t1.exon8;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66514903 | 66514963 | 66514903 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66515040 | 66515098 | 66515040 | ID=MS.gene70457.t1.exon9;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66515040 | 66515098 | 66515040 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66515193 | 66515270 | 66515193 | ID=MS.gene70457.t1.exon10;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66515193 | 66515270 | 66515193 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66516934 | 66517156 | 66516934 | ID=MS.gene70457.t1.exon11;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66516934 | 66517156 | 66516934 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66517489 | 66517699 | 66517489 | ID=MS.gene70457.t1.exon12;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66517489 | 66517699 | 66517489 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66518317 | 66518622 | 66518317 | ID=MS.gene70457.t1.exon13;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66518317 | 66518622 | 66518317 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| chr3.1 | exon | 66518859 | 66519053 | 66518859 | ID=MS.gene70457.t1.exon14;Parent=MS.gene70457.t1 |
| chr3.1 | CDS | 66518859 | 66519053 | 66518859 | ID=cds.MS.gene70457.t1;Parent=MS.gene70457.t1 |
| Gene Sequence |
| Protein sequence |
