AlfalfaGEDB | MS.gene70811

M. sativa cultivar XinJiangDaYe / MS.gene70811

KEGG: -
GO: -
PFAM: PF05910.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70811.t1	XP_003591011.2	99.7	303	1	0	1	303	1	303	2.40E-171	611.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70811.t1	G7I6W7	99.7	303	1	0	1	303	1	303	1.7e-171	611.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049378	MS.gene70811	0.812351	4.43E-51	-1.69E-46
MS.gene04984	MS.gene70811	0.827687	1.36E-54	-1.69E-46
MS.gene050226	MS.gene70811	0.812253	4.65E-51	-1.69E-46
MS.gene050227	MS.gene70811	0.812666	3.78E-51	-1.69E-46
MS.gene050228	MS.gene70811	0.812693	3.73E-51	-1.69E-46
MS.gene050442	MS.gene70811	0.80158	8.42E-49	-1.69E-46
MS.gene050586	MS.gene70811	0.80136	9.34E-49	-1.69E-46
MS.gene050623	MS.gene70811	-0.800648	1.31E-48	-1.69E-46
MS.gene050719	MS.gene70811	0.817703	2.87E-52	-1.69E-46
MS.gene050721	MS.gene70811	0.816709	4.81E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70811.t1	MTR_1g081260	99.670	303	1	0	1	303	1	303	0.0	620
MS.gene70811.t1	MTR_7g114790	72.026	311	72	7	1	302	1	305	1.53e-156	439
MS.gene70811.t1	MTR_7g095100	64.725	309	101	4	1	303	1	307	2.74e-144	408
MS.gene70811.t1	MTR_3g076610	35.507	276	152	3	4	257	7	278	1.94e-61	198
MS.gene70811.t1	MTR_5g069570	37.647	255	155	3	10	260	14	268	2.19e-60	195
MS.gene70811.t1	MTR_4g104760	36.122	263	152	6	4	253	7	266	2.63e-59	192
MS.gene70811.t1	MTR_3g082430	40.773	233	133	3	26	253	12	244	6.50e-58	188
MS.gene70811.t1	MTR_4g055230	36.760	321	166	10	1	301	1	304	1.28e-57	187
MS.gene70811.t1	MTR_2g084965	38.433	268	146	7	6	254	8	275	4.34e-50	168
MS.gene70811.t1	MTR_7g103900	33.129	326	177	10	1	302	1	309	3.23e-49	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70811.t1	AT5G28150	65.789	304	88	4	1	303	1	289	1.66e-139	395
MS.gene70811.t1	AT3G04860	64.379	306	89	6	1	303	1	289	4.65e-135	384
MS.gene70811.t1	AT2G04220	41.200	250	142	3	14	259	12	260	2.02e-65	207
MS.gene70811.t1	AT4G12690	41.975	243	135	4	15	253	9	249	3.14e-64	204
MS.gene70811.t1	AT4G12690	41.975	243	135	4	15	253	9	249	3.14e-64	204
MS.gene70811.t1	AT5G48270	36.260	262	149	9	5	253	13	269	7.46e-52	173
MS.gene70811.t1	AT2G27770	33.433	335	173	10	1	301	1	319	2.00e-49	167
MS.gene70811.t1	AT3G13229	34.894	235	142	4	33	256	8	242	3.79e-45	155
MS.gene70811.t1	AT5G11000	37.302	252	117	9	31	253	33	272	7.76e-43	151
MS.gene70811.t1	AT2G25200	28.571	259	147	8	6	242	16	258	1.32e-30	118

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Find 42 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGCATTCAAAGGTAA+AGG	0.522755	1.2:-61123877	None:intergenic
AAAACATTTGCATCAGAAAC+AGG	0.388646	1.2:-61124228	None:intergenic
AAACAAATGGTTCTTCTTCT+TGG	0.224208	1.2:+61123814	MS.gene70811:CDS
AAACTGTGATGCAGGTGAAA+AGG	0.551305	1.2:+61124046	MS.gene70811:CDS
AAATTGCAGCAACAAGGTGT+TGG	0.560217	1.2:+61124285	MS.gene70811:CDS
AACACCTTGTTGCTGCAATT+TGG	0.305444	1.2:-61124283	None:intergenic
AAGCAAAACTGCTCAGAATC+TGG	0.403487	1.2:+61123507	MS.gene70811:CDS
AATCATACCATACTTGTGGA+TGG	0.616419	1.2:+61124090	MS.gene70811:CDS
ACATGGAGTAAGAGTTTGAT+GGG	0.527449	1.2:+61123583	MS.gene70811:CDS
AGGAAATCATACCATACTTG+TGG	0.576851	1.2:+61124086	MS.gene70811:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAGCATTCAAAGGTAA+AGG	-	chr1.2:61123880-61123899	None:intergenic	30.0%
AAAACATTTGCATCAGAAAC+AGG	-	chr1.2:61124231-61124250	None:intergenic	30.0%
AAACAAATGGTTCTTCTTCT+TGG	+	chr1.2:61123814-61123833	MS.gene70811:CDS	30.0%
CTTGCTTGATTACTATTACA+TGG	+	chr1.2:61123566-61123585	MS.gene70811:CDS	30.0%
GTTGTAAGATTGATGTGTAT+TGG	+	chr1.2:61123719-61123738	MS.gene70811:CDS	30.0%
TCTTGAAGTTGAGGTTTATT+GGG	+	chr1.2:61124113-61124132	MS.gene70811:CDS	30.0%
AATCATACCATACTTGTGGA+TGG	+	chr1.2:61124090-61124109	MS.gene70811:CDS	35.0%
ACATGGAGTAAGAGTTTGAT+GGG	+	chr1.2:61123583-61123602	MS.gene70811:CDS	35.0%
AGGAAATCATACCATACTTG+TGG	+	chr1.2:61124086-61124105	MS.gene70811:CDS	35.0%
ATCTACCTCTAATTGAACAC+TGG	-	chr1.2:61123546-61123565	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	61123433	61124344	61123433	ID=MS.gene70811
chr1.2	mRNA	61123433	61124344	61123433	ID=MS.gene70811.t1;Parent=MS.gene70811
chr1.2	exon	61123433	61124344	61123433	ID=MS.gene70811.t1.exon1;Parent=MS.gene70811.t1
chr1.2	CDS	61123433	61124344	61123433	ID=cds.MS.gene70811.t1;Parent=MS.gene70811.t1

Gene Sequence

>MS.gene70811

ATGAAGGATTTTCCATCTTGTTTTGGTGAGAATGCAGTTCAGGTAGCAGATTCATCATCATCATCTTCAAGCTCAAGCAAAACTGCTCAGAATCTGGTTATTTGTGTTTACCAGTGTTCAATTAGAGGTAGATCTTGCTTGATTACTATTACATGGAGTAAGAGTTTGATGGGTCAAGGTTTTAGTGTTGGGATTGATGATGCTTCAAATCAGTGTTTATGTAAAGTTGATATAAAACCTTGGGTGTTTTCTAAGAGAAAGGGTTGTAAGAGTTTAGAAGCTTATAGTTGTAAGATTGATGTGTATTGGGATCTTTCTTCAGCTAGATTTGGTGTTGGACCTGAACCATTGGAGGGTTTTTTTGTAGGTGTAGTTGTTGATAAACAAATGGTTCTTCTTCTTGGTGATTTAAGAAAAGAGGCTTTTAAGAAATCTAATGCAGTTCCTTTACCTTTGAATGCTGTTTTTGTTGCTAAGAAAGAACATGTTTTTGGTAAGAAGTTTTTTGGTAACAAGGTTGTGTTTTGTGACAATGGTAAAATTCATGATCTTGTTATTGAGTGTGATACTTCTGTTGCAAGTGATCCTTGTCTTATAGTTCGGATCGATAGCAAAACTGTGATGCAGGTGAAAAGGTTGAAGTGGAAGTTTAGAGGAAATCATACCATACTTGTGGATGGTCTTGAAGTTGAGGTTTATTGGGATGTTTATAATTGGCTTTTTGGTACATCTTTTGGAAATGCTGTTTTCATGTTTAGAACATGTTTCTCTCAAGATAAAATTTGGGATGCTCAACCTGTTTCTGATGCAAATGTTTTGCAGTGGTCTTTCTCTCAGAGGTTTTCTGAGACCAAATTGCAGCAACAAGGTGTTGGTTTCTCACATGTTTTGTATGCTTGGAAGAATGAATAG

Protein sequence

>MS.gene70811.t1

MKDFPSCFGENAVQVADSSSSSSSSSKTAQNLVICVYQCSIRGRSCLITITWSKSLMGQGFSVGIDDASNQCLCKVDIKPWVFSKRKGCKSLEAYSCKIDVYWDLSSARFGVGPEPLEGFFVGVVVDKQMVLLLGDLRKEAFKKSNAVPLPLNAVFVAKKEHVFGKKFFGNKVVFCDNGKIHDLVIECDTSVASDPCLIVRIDSKTVMQVKRLKWKFRGNHTILVDGLEVEVYWDVYNWLFGTSFGNAVFMFRTCFSQDKIWDAQPVSDANVLQWSFSQRFSETKLQQQGVGFSHVLYAWKNE