Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71922.t1 | XP_013457621.1 | 98.3 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.00E+00 | 1509.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71922.t1 | Q940Y1 | 68.1 | 772 | 186 | 12 | 1 | 765 | 1 | 719 | 4.3e-298 | 1025.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71922.t1 | A0A072UPM8 | 98.3 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.0e+00 | 1509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070505 | MS.gene71922 | PPI |
| MS.gene057886 | MS.gene71922 | PPI |
| MS.gene070509 | MS.gene71922 | PPI |
| MS.gene71922 | MS.gene070503 | PPI |
| MS.gene71922 | MS.gene81620 | PPI |
| MS.gene71922 | MS.gene016758 | PPI |
| MS.gene81615 | MS.gene71922 | PPI |
| MS.gene71922 | MS.gene070511 | PPI |
| MS.gene71922 | MS.gene070507 | PPI |
| MS.gene71922 | MS.gene057884 | PPI |
| MS.gene71922 | MS.gene057883 | PPI |
| MS.gene71922 | MS.gene070492 | PPI |
| MS.gene71922 | MS.gene070510 | PPI |
| MS.gene016742 | MS.gene71922 | PPI |
| MS.gene81622 | MS.gene71922 | PPI |
| MS.gene016743 | MS.gene71922 | PPI |
| MS.gene37911 | MS.gene71922 | PPI |
| MS.gene71922 | MS.gene67840 | PPI |
| MS.gene71922 | MS.gene81617 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71922.t1 | MTR_4g101410 | 98.312 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.0 | 1579 |
| MS.gene71922.t1 | MTR_4g101410 | 98.516 | 539 | 8 | 0 | 232 | 770 | 1 | 539 | 0.0 | 1119 |
| MS.gene71922.t1 | MTR_3g073040 | 54.419 | 792 | 303 | 12 | 6 | 759 | 1 | 772 | 0.0 | 841 |
| MS.gene71922.t1 | MTR_3g073040 | 54.293 | 792 | 303 | 13 | 6 | 759 | 1 | 771 | 0.0 | 835 |
| MS.gene71922.t1 | MTR_5g459350 | 57.462 | 717 | 284 | 10 | 55 | 765 | 52 | 753 | 0.0 | 793 |
| MS.gene71922.t1 | MTR_3g086340 | 54.698 | 713 | 306 | 9 | 58 | 758 | 95 | 802 | 0.0 | 778 |
| MS.gene71922.t1 | MTR_3g097270 | 54.357 | 723 | 282 | 12 | 55 | 766 | 73 | 758 | 0.0 | 774 |
| MS.gene71922.t1 | MTR_3g073040 | 51.501 | 633 | 250 | 11 | 6 | 601 | 1 | 613 | 0.0 | 620 |
| MS.gene71922.t1 | MTR_3g086340 | 53.176 | 551 | 245 | 5 | 58 | 598 | 95 | 642 | 0.0 | 582 |
| MS.gene71922.t1 | MTR_4g064110 | 32.626 | 377 | 229 | 12 | 393 | 754 | 71 | 437 | 3.30e-45 | 169 |
| MS.gene71922.t1 | MTR_7g061830 | 33.245 | 376 | 228 | 11 | 391 | 752 | 73 | 439 | 1.11e-43 | 164 |
| MS.gene71922.t1 | MTR_4g115490 | 54.000 | 100 | 21 | 4 | 379 | 476 | 74 | 150 | 1.13e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71922.t1 | AT4G22540 | 68.912 | 772 | 180 | 12 | 1 | 765 | 1 | 719 | 0.0 | 1078 |
| MS.gene71922.t1 | AT4G22540 | 68.912 | 772 | 180 | 12 | 1 | 765 | 1 | 719 | 0.0 | 1078 |
| MS.gene71922.t1 | AT4G12460 | 66.532 | 741 | 190 | 9 | 31 | 765 | 3 | 691 | 0.0 | 1011 |
| MS.gene71922.t1 | AT4G12460 | 66.532 | 741 | 190 | 9 | 31 | 765 | 3 | 691 | 0.0 | 1011 |
| MS.gene71922.t1 | AT4G12460 | 66.442 | 742 | 190 | 10 | 31 | 765 | 3 | 692 | 0.0 | 1008 |
| MS.gene71922.t1 | AT4G12460 | 65.331 | 649 | 167 | 9 | 31 | 673 | 3 | 599 | 0.0 | 858 |
| MS.gene71922.t1 | AT4G12460 | 65.231 | 650 | 167 | 10 | 31 | 673 | 3 | 600 | 0.0 | 853 |
| MS.gene71922.t1 | AT4G08180 | 58.815 | 709 | 280 | 6 | 55 | 759 | 106 | 806 | 0.0 | 843 |
| MS.gene71922.t1 | AT4G08180 | 58.815 | 709 | 280 | 6 | 55 | 759 | 106 | 806 | 0.0 | 843 |
| MS.gene71922.t1 | AT4G08180 | 58.815 | 709 | 279 | 7 | 55 | 759 | 106 | 805 | 0.0 | 838 |
| MS.gene71922.t1 | AT4G08180 | 58.533 | 709 | 281 | 7 | 55 | 759 | 106 | 805 | 0.0 | 833 |
| MS.gene71922.t1 | AT2G31020 | 52.651 | 811 | 297 | 14 | 6 | 763 | 1 | 777 | 0.0 | 810 |
| MS.gene71922.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene71922.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene71922.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene71922.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene71922.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene71922.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene71922.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene71922.t1 | AT1G13170 | 54.420 | 724 | 308 | 9 | 50 | 761 | 90 | 803 | 0.0 | 788 |
| MS.gene71922.t1 | AT1G13170 | 52.886 | 745 | 308 | 10 | 50 | 761 | 90 | 824 | 0.0 | 774 |
| MS.gene71922.t1 | AT4G12460 | 78.706 | 371 | 71 | 2 | 395 | 765 | 1 | 363 | 0.0 | 640 |
| MS.gene71922.t1 | AT2G31030 | 68.613 | 411 | 123 | 1 | 350 | 760 | 85 | 489 | 0.0 | 610 |
| MS.gene71922.t1 | AT3G09300 | 34.232 | 371 | 217 | 13 | 393 | 747 | 75 | 434 | 1.28e-47 | 176 |
| MS.gene71922.t1 | AT5G02100 | 33.065 | 372 | 220 | 12 | 393 | 747 | 43 | 402 | 2.68e-46 | 171 |
| MS.gene71922.t1 | AT5G02100 | 33.065 | 372 | 220 | 12 | 393 | 747 | 70 | 429 | 3.58e-46 | 171 |
| MS.gene71922.t1 | AT5G59420 | 32.880 | 368 | 224 | 11 | 391 | 744 | 68 | 426 | 2.45e-43 | 163 |
| MS.gene71922.t1 | AT1G77730 | 35.242 | 227 | 136 | 4 | 48 | 272 | 47 | 264 | 5.94e-41 | 151 |
| MS.gene71922.t1 | AT5G02100 | 33.333 | 243 | 154 | 6 | 393 | 632 | 70 | 307 | 6.84e-32 | 127 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTGCCTTTGCTGTTTC+TGG | 0.052254 | 8.3:+19848807 | MS.gene71922:CDS |
| AAAATCCATTCTTTGTTAAT+TGG | 0.181482 | 8.3:-19846665 | None:intergenic |
| TGAAATTCACCAAATATATC+TGG | 0.207215 | 8.3:-19852462 | None:intergenic |
| TTCCCCTAACAAGGGATTAA+AGG | 0.210036 | 8.3:-19848862 | None:intergenic |
| TTCGATATACTGGTGGATAT+TGG | 0.234820 | 8.3:+19852406 | MS.gene71922:CDS |
| CTGACGGCGAAGAGCGTTTC+CGG | 0.254872 | 8.3:-19843393 | None:intergenic |
| AAGGTAGAGGATGGAGGTTT+TGG | 0.259692 | 8.3:+19849678 | MS.gene71922:CDS |
| GTAACATTCATTCAAAGTTT+TGG | 0.260982 | 8.3:+19849708 | MS.gene71922:CDS |
| AAGCCCTTTAATCCCTTGTT+AGG | 0.261850 | 8.3:+19848858 | MS.gene71922:CDS |
| TTTGACGAAGTGTAATCTTT+AGG | 0.279881 | 8.3:-19851103 | None:intergenic |
| AGCATATGAGCATGGGAAAA+AGG | 0.309220 | 8.3:+19848128 | MS.gene71922:CDS |
| GGAATTTGAGAAGGCAAATA+TGG | 0.309519 | 8.3:+19851442 | MS.gene71922:CDS |
| CTTTACAAATGGACTAATTA+CGG | 0.310331 | 8.3:+19843212 | MS.gene71922:CDS |
| AGCTTCCACCCACGGATTCC+AGG | 0.322458 | 8.3:+19851387 | MS.gene71922:CDS |
| ACAATGATGTATGATGATTA+TGG | 0.323008 | 8.3:+19847910 | MS.gene71922:CDS |
| GGATCAGAAGCCACGGTTGC+CGG | 0.323208 | 8.3:+19843185 | MS.gene71922:CDS |
| TTGTGATCATCATGGGAATA+TGG | 0.330778 | 8.3:+19849943 | MS.gene71922:CDS |
| TCCGGCGTCTCTATCCATTC+TGG | 0.334542 | 8.3:-19843375 | None:intergenic |
| AGGAGAAGGGCGTTAGTCTT+TGG | 0.335192 | 8.3:+19847980 | MS.gene71922:CDS |
| CTCCTACCTGGCGAGGATTT+CGG | 0.339067 | 8.3:-19850027 | None:intergenic |
| TCGATATACTGGTGGATATT+GGG | 0.340088 | 8.3:+19852407 | MS.gene71922:CDS |
| CATTTCTGAAGGGATGATAT+TGG | 0.340358 | 8.3:-19848069 | None:intergenic |
| TCAAGGAAAATGCAAGAAAA+TGG | 0.353504 | 8.3:+19852339 | MS.gene71922:CDS |
| TCCCCTAACAAGGGATTAAA+GGG | 0.357578 | 8.3:-19848861 | None:intergenic |
| CTGGTTTGTTTGATACCATT+AGG | 0.365540 | 8.3:+19845241 | MS.gene71922:CDS |
| ATCGACGACGTACGCTTAAT+CGG | 0.368584 | 8.3:+19843329 | MS.gene71922:CDS |
| TTTGGAGTACTCCTATCTTC+TGG | 0.377023 | 8.3:+19848101 | MS.gene71922:CDS |
| GATAGATGATGACAGTTTAG+TGG | 0.378128 | 8.3:-19845060 | None:intergenic |
| TGATACCATTAGGCAATTAG+AGG | 0.378401 | 8.3:+19845251 | MS.gene71922:CDS |
| TTCAGGGAAACAGTCTCCTT+CGG | 0.379577 | 8.3:+19848775 | MS.gene71922:intron |
| AATATAATTTGCCAAGGATA+AGG | 0.381936 | 8.3:-19849922 | None:intergenic |
| ATTGGCTCATTAAAGTATAC+TGG | 0.382729 | 8.3:-19848051 | None:intergenic |
| GATGGATGCCCAGATATATT+TGG | 0.388595 | 8.3:+19852453 | MS.gene71922:CDS |
| TTCGAGGGCGAGGAGTTTAC+CGG | 0.392882 | 8.3:+19843130 | MS.gene71922:CDS |
| TTCTCTAAGTGCCGTTGATC+AGG | 0.393417 | 8.3:-19851416 | None:intergenic |
| TCAGGGAAACAGTCTCCTTC+GGG | 0.396439 | 8.3:+19848776 | MS.gene71922:intron |
| TCCTTCAGTTGTTCATCTAA+AGG | 0.398048 | 8.3:+19843445 | MS.gene71922:CDS |
| TTCATTTGAGAACTGATTCA+AGG | 0.398225 | 8.3:+19844986 | MS.gene71922:CDS |
| ACTTGAGCCTGCAGGAATAC+TGG | 0.404656 | 8.3:-19849982 | None:intergenic |
| AATGGAACGTTTCGATATAC+TGG | 0.407910 | 8.3:+19852396 | MS.gene71922:CDS |
| TTTCGCAAAGAAGGTGAAAA+TGG | 0.411519 | 8.3:+19852378 | MS.gene71922:CDS |
| ATGGAACATTGTTGTGGAAA+AGG | 0.414030 | 8.3:+19851125 | MS.gene71922:CDS |
| TTGCCGGAGTTCTTTACAAA+TGG | 0.416794 | 8.3:+19843201 | MS.gene71922:CDS |
| AAAGATTACACTTCGTCAAA+TGG | 0.418594 | 8.3:+19851106 | MS.gene71922:CDS |
| CCTCATTATACCTTTAGTCC+TGG | 0.419213 | 8.3:-19851217 | None:intergenic |
| CTCTTTGAACTTGAGCCTGC+AGG | 0.419501 | 8.3:-19849990 | None:intergenic |
| AGTTGATACAGATATATGAT+AGG | 0.421055 | 8.3:-19845091 | None:intergenic |
| TTCTCCTTCTCAACAGGATC+CGG | 0.423276 | 8.3:-19847964 | None:intergenic |
| AAATTGTACCGAGTCAGATT+TGG | 0.423649 | 8.3:-19851160 | None:intergenic |
| CCAATGAGATGCAGCACAAC+GGG | 0.432925 | 8.3:-19843058 | None:intergenic |
| TCTAGGGTCAGAACTCCAAC+TGG | 0.434657 | 8.3:-19849752 | None:intergenic |
| CTTTCTTCTAATTAGGTGAC+TGG | 0.437943 | 8.3:+19850986 | MS.gene71922:intron |
| ATTCTCCGGTGAACGGATCT+TGG | 0.438401 | 8.3:-19843288 | None:intergenic |
| CTCATTATACCTTTAGTCCT+GGG | 0.439634 | 8.3:-19851216 | None:intergenic |
| TGTTAGTCAAGGCATTGATA+TGG | 0.441535 | 8.3:+19847870 | MS.gene71922:CDS |
| ACGCCCTTCTCCTTCTCAAC+AGG | 0.442450 | 8.3:-19847970 | None:intergenic |
| AATTACCTCTAATTGCCTAA+TGG | 0.446236 | 8.3:-19845256 | None:intergenic |
| ATCAACGGCACTTAGAGAAT+GGG | 0.452974 | 8.3:+19851420 | MS.gene71922:CDS |
| CAATGATGTATGATGATTAT+GGG | 0.458008 | 8.3:+19847911 | MS.gene71922:CDS |
| TTTCACCATCATCAAACTCT+AGG | 0.460599 | 8.3:-19849769 | None:intergenic |
| GGAAAATGCAAGAAAATGGC+TGG | 0.461061 | 8.3:+19852343 | MS.gene71922:CDS |
| AAGCAGATCCCTCGGGTTCA+AGG | 0.463930 | 8.3:-19846626 | None:intergenic |
| TCCTCTACCTTCACAATGGC+AGG | 0.464356 | 8.3:-19849666 | None:intergenic |
| AAGCAAGAGCTGTAGGATCA+TGG | 0.469213 | 8.3:+19852430 | MS.gene71922:CDS |
| ATATGCTCTATCCAGAAGAT+AGG | 0.472527 | 8.3:-19848112 | None:intergenic |
| CGCGAATCGTCTCGCCAGAA+TGG | 0.473951 | 8.3:+19843361 | MS.gene71922:CDS |
| CATTGATATGGAAAATAGTC+AGG | 0.474331 | 8.3:+19847882 | MS.gene71922:CDS |
| TGTAGCGTGGATACAAGCTT+TGG | 0.474954 | 8.3:+19845017 | MS.gene71922:CDS |
| AAGAAGCGAACTCCTTTGTC+AGG | 0.476918 | 8.3:-19848903 | None:intergenic |
| AGCCCTTTAATCCCTTGTTA+GGG | 0.477745 | 8.3:+19848859 | MS.gene71922:CDS |
| ACAATATATAACCTTATCCT+TGG | 0.478634 | 8.3:+19849911 | MS.gene71922:CDS |
| GATCAACGGCACTTAGAGAA+TGG | 0.479149 | 8.3:+19851419 | MS.gene71922:CDS |
| AAAGTACGCCATTGCGGAGG+AGG | 0.479447 | 8.3:-19843259 | None:intergenic |
| CATTGTTGTGGAAAAGGACT+AGG | 0.483064 | 8.3:+19851131 | MS.gene71922:CDS |
| ATTCTTTGTCAAGAACGATC+TGG | 0.485342 | 8.3:+19845222 | MS.gene71922:CDS |
| AAATTATATTGTGATCATCA+TGG | 0.485557 | 8.3:+19849935 | MS.gene71922:CDS |
| CCCGTTGTGCTGCATCTCAT+TGG | 0.486703 | 8.3:+19843058 | MS.gene71922:CDS |
| GTCGTGCAAAGCAGATCCCT+CGG | 0.495137 | 8.3:-19846634 | None:intergenic |
| CCTAGGTGGTTTCGCAAAGA+AGG | 0.495193 | 8.3:+19852369 | MS.gene71922:CDS |
| TGCATCTCATTGGAGAGTCC+AGG | 0.495599 | 8.3:+19843068 | MS.gene71922:CDS |
| GAGAACAGATTGAGATTCTC+CGG | 0.501584 | 8.3:-19843302 | None:intergenic |
| GGTGAATTACTTCCGATCCC+TGG | 0.503690 | 8.3:-19843086 | None:intergenic |
| GAATACCAATTAACAAAGAA+TGG | 0.504184 | 8.3:+19846660 | MS.gene71922:CDS |
| CATACACGGCTGCACTTTCG+AGG | 0.505626 | 8.3:+19843114 | MS.gene71922:CDS |
| GGATTTGTTGAAGATACAAT+GGG | 0.510337 | 8.3:+19851007 | MS.gene71922:CDS |
| TGAGCTTACCCCAGGACTAA+AGG | 0.510721 | 8.3:+19851207 | MS.gene71922:CDS |
| AACTCCTTTGTCAGGAAAGT+CGG | 0.512877 | 8.3:-19848895 | None:intergenic |
| TTCGTAAGTTTCCCCTAACA+AGG | 0.521697 | 8.3:-19848871 | None:intergenic |
| ATTGCGGAGGAGGAACCATC+GGG | 0.525539 | 8.3:-19843249 | None:intergenic |
| GAAGGAGAAGAAGATGAAGA+AGG | 0.525636 | 8.3:-19843428 | None:intergenic |
| AAGAAAATGGCTGGGAACCT+AGG | 0.525750 | 8.3:+19852352 | MS.gene71922:CDS |
| TTGTACCGAGTCAGATTTGG+TGG | 0.526468 | 8.3:-19851157 | None:intergenic |
| AATCCTCAAAACATTTCTGA+AGG | 0.528626 | 8.3:-19848080 | None:intergenic |
| AGGTCTCAGCCTGGAATCCG+TGG | 0.532533 | 8.3:-19851396 | None:intergenic |
| GAAATTCACCAAATATATCT+GGG | 0.536305 | 8.3:-19852461 | None:intergenic |
| TAAGAAACGTTTGCTTGAAG+AGG | 0.539228 | 8.3:+19845122 | MS.gene71922:CDS |
| CATTGCGGAGGAGGAACCAT+CGG | 0.540290 | 8.3:-19843250 | None:intergenic |
| CCGTTGATCAGGTCTCAGCC+TGG | 0.541115 | 8.3:-19851405 | None:intergenic |
| AATTATATTGTGATCATCAT+GGG | 0.542313 | 8.3:+19849936 | MS.gene71922:CDS |
| AGCAAGAGCTGTAGGATCAT+GGG | 0.544115 | 8.3:+19852431 | MS.gene71922:CDS |
| TTACTCCAAGATCCGTTCAC+CGG | 0.545478 | 8.3:+19843283 | MS.gene71922:CDS |
| CTAGGGCGTGGAAAATATAG+TGG | 0.547554 | 8.3:+19846693 | MS.gene71922:CDS |
| CGGCTGCACTTTCGAGGGCG+AGG | 0.549758 | 8.3:+19843120 | MS.gene71922:CDS |
| ACCTTTAGATGAACAACTGA+AGG | 0.550447 | 8.3:-19843446 | None:intergenic |
| CGTCAAATGGAACATTGTTG+TGG | 0.552399 | 8.3:+19851119 | MS.gene71922:CDS |
| AGTCCATTTGTAAAGAACTC+CGG | 0.552798 | 8.3:-19843204 | None:intergenic |
| GGACTAATTACGGCAAAGGA+TGG | 0.555562 | 8.3:+19843222 | MS.gene71922:CDS |
| AAGAAACGTTTGCTTGAAGA+GGG | 0.556527 | 8.3:+19845123 | MS.gene71922:CDS |
| TCTTGACCGAAATCCTCGCC+AGG | 0.557364 | 8.3:+19850021 | MS.gene71922:CDS |
| GTTGATACAGATATATGATA+GGG | 0.559476 | 8.3:-19845090 | None:intergenic |
| CTGGATAGAGCATATGAGCA+TGG | 0.561758 | 8.3:+19848120 | MS.gene71922:CDS |
| CAGCCACATTATTTGGCAAG+TGG | 0.563225 | 8.3:+19851038 | MS.gene71922:CDS |
| CATTCTGGCGAGACGATTCG+CGG | 0.563946 | 8.3:-19843360 | None:intergenic |
| TACCGAGTCAGATTTGGTGG+TGG | 0.569125 | 8.3:-19851154 | None:intergenic |
| TCGTGCAAAGCAGATCCCTC+GGG | 0.569487 | 8.3:-19846633 | None:intergenic |
| AAAGGAGAAGCTTCCACCCA+CGG | 0.570119 | 8.3:+19851379 | MS.gene71922:intron |
| GACTGCATTGTTCGCCGTGG+AGG | 0.570257 | 8.3:+19843164 | MS.gene71922:CDS |
| GTTGGAAAAGAGACAAAGAA+TGG | 0.571522 | 8.3:+19851475 | MS.gene71922:CDS |
| TTCACCATCATCAAACTCTA+GGG | 0.571647 | 8.3:-19849768 | None:intergenic |
| CGATGGTTCCTCCTCCGCAA+TGG | 0.572855 | 8.3:+19843251 | MS.gene71922:CDS |
| TATTGGGAAGCAAGAGCTGT+AGG | 0.573587 | 8.3:+19852423 | MS.gene71922:CDS |
| AGAGAATGGGGAATTTGAGA+AGG | 0.574961 | 8.3:+19851433 | MS.gene71922:CDS |
| AGCCACATTATTTGGCAAGT+GGG | 0.575209 | 8.3:+19851039 | MS.gene71922:CDS |
| CAATGGCAGGCAACCACAGT+TGG | 0.575286 | 8.3:-19849653 | None:intergenic |
| TCAATTCAACTTGACCCAGT+TGG | 0.576089 | 8.3:+19849737 | MS.gene71922:CDS |
| GCCCTTTAATCCCTTGTTAG+GGG | 0.581179 | 8.3:+19848860 | MS.gene71922:CDS |
| GCATCTCATTGGAGAGTCCA+GGG | 0.581823 | 8.3:+19843069 | MS.gene71922:CDS |
| TGGATTTGTTGAAGATACAA+TGG | 0.582114 | 8.3:+19851006 | MS.gene71922:CDS |
| ACACTGAATGAGCTTACCCC+AGG | 0.584389 | 8.3:+19851199 | MS.gene71922:CDS |
| TGGATAGAGCATATGAGCAT+GGG | 0.584720 | 8.3:+19848121 | MS.gene71922:CDS |
| GCCAGAATGGATAGAGACGC+CGG | 0.586219 | 8.3:+19843374 | MS.gene71922:CDS |
| GCCATTGTGAAGGTAGAGGA+TGG | 0.586276 | 8.3:+19849669 | MS.gene71922:CDS |
| CTGACCCTAGAGTTTGATGA+TGG | 0.588643 | 8.3:+19849764 | MS.gene71922:CDS |
| GTAATCGCCAGTATTCCTGC+AGG | 0.591049 | 8.3:+19849975 | MS.gene71922:CDS |
| GTCAATGATCAAAGACAATG+TGG | 0.591275 | 8.3:+19848002 | MS.gene71922:CDS |
| AAATATGGAGAAACAAAGGT+TGG | 0.591541 | 8.3:+19851457 | MS.gene71922:CDS |
| GGCAGGCAACCACAGTTGGA+TGG | 0.595585 | 8.3:-19849649 | None:intergenic |
| AAATGGACTAATTACGGCAA+AGG | 0.595813 | 8.3:+19843218 | MS.gene71922:CDS |
| AAGGTTTATGACTCTTCTGA+CGG | 0.598402 | 8.3:-19843409 | None:intergenic |
| GCCTGCCATTGTGAAGGTAG+AGG | 0.598638 | 8.3:+19849665 | MS.gene71922:CDS |
| CCTTCTTTGCGAAACCACCT+AGG | 0.602307 | 8.3:-19852369 | None:intergenic |
| GGAACGTTTCGATATACTGG+TGG | 0.603452 | 8.3:+19852399 | MS.gene71922:CDS |
| GCTTCCGGATCCTGTTGAGA+AGG | 0.604677 | 8.3:+19847960 | MS.gene71922:CDS |
| TCATTGGAGAGTCCAGGGAT+CGG | 0.605015 | 8.3:+19843074 | MS.gene71922:CDS |
| AGTGCAGCCGTGTATGACTC+CGG | 0.606485 | 8.3:-19843107 | None:intergenic |
| GGTAAGCTCATTCAGTGTGA+TGG | 0.607115 | 8.3:-19851194 | None:intergenic |
| GATTGAGATTCTCCGGTGAA+CGG | 0.609231 | 8.3:-19843295 | None:intergenic |
| GGTATCCTCAAATAGTAAGA+CGG | 0.610160 | 8.3:+19847932 | MS.gene71922:CDS |
| GAAAATGCAAGAAAATGGCT+GGG | 0.611031 | 8.3:+19852344 | MS.gene71922:CDS |
| GATCACAATATAATTTGCCA+AGG | 0.612712 | 8.3:-19849928 | None:intergenic |
| TGAAATATTTCAGTGGAGCA+AGG | 0.613705 | 8.3:+19849787 | MS.gene71922:CDS |
| ATCCTCAAAACATTTCTGAA+GGG | 0.613815 | 8.3:-19848079 | None:intergenic |
| GCGAGGAGTTTACCGGCGAG+TGG | 0.614782 | 8.3:+19843137 | MS.gene71922:CDS |
| GGATCCTGTTGAGAAGGAGA+AGG | 0.614967 | 8.3:+19847966 | MS.gene71922:CDS |
| AGGGATCGGAAGTAATTCAC+CGG | 0.615080 | 8.3:+19843088 | MS.gene71922:CDS |
| AAGCTTGTATCCACGCTACA+CGG | 0.615200 | 8.3:-19845014 | None:intergenic |
| GCTCATTAAAGTATACTGGA+AGG | 0.617576 | 8.3:-19848047 | None:intergenic |
| TCTGGATATGCATCATCAGA+AGG | 0.618172 | 8.3:+19848825 | MS.gene71922:CDS |
| TCATTATACCTTTAGTCCTG+GGG | 0.620951 | 8.3:-19851215 | None:intergenic |
| GTAAAGAACTCCGGCAACCG+TGG | 0.621812 | 8.3:-19843195 | None:intergenic |
| GATCCTGTTGAGAAGGAGAA+GGG | 0.622608 | 8.3:+19847967 | MS.gene71922:CDS |
| GGCAGCTAACCTTGAACCCG+AGG | 0.623759 | 8.3:+19846617 | MS.gene71922:intron |
| GGCCACCACCAAATCTGACT+CGG | 0.623879 | 8.3:+19851152 | MS.gene71922:CDS |
| TCCAATGAGATGCAGCACAA+CGG | 0.624692 | 8.3:-19843059 | None:intergenic |
| GGTCTCAGCCTGGAATCCGT+GGG | 0.626857 | 8.3:-19851395 | None:intergenic |
| AGGCAAATATGGAGAAACAA+AGG | 0.630247 | 8.3:+19851453 | MS.gene71922:CDS |
| CAAGGAAAGACCGTGTAGCG+TGG | 0.631619 | 8.3:+19845004 | MS.gene71922:CDS |
| CCGTGGAGGATCAGAAGCCA+CGG | 0.633089 | 8.3:+19843178 | MS.gene71922:CDS |
| CTCAGCCTGGAATCCGTGGG+TGG | 0.633274 | 8.3:-19851392 | None:intergenic |
| TAGCAGTGAAAATCTTGTGA+AGG | 0.636958 | 8.3:+19845146 | MS.gene71922:CDS |
| TCTGCGGAAGCTGTTAGTCA+AGG | 0.641099 | 8.3:+19847859 | MS.gene71922:CDS |
| TCGTAAGTTTCCCCTAACAA+GGG | 0.642972 | 8.3:-19848870 | None:intergenic |
| AGGAATACTGGCGATTACCA+CGG | 0.645278 | 8.3:-19849970 | None:intergenic |
| ATGCAGTCAGATCCACTCGC+CGG | 0.646020 | 8.3:-19843149 | None:intergenic |
| GTGGTTGCCTGCCATTGTGA+AGG | 0.649232 | 8.3:+19849659 | MS.gene71922:CDS |
| TAATTCACCGGAGTCATACA+CGG | 0.650053 | 8.3:+19843100 | MS.gene71922:CDS |
| ATGATGGTGAAATATTTCAG+TGG | 0.650358 | 8.3:+19849780 | MS.gene71922:CDS |
| CATGGGAATATGGAAATCCG+TGG | 0.651698 | 8.3:+19849953 | MS.gene71922:CDS |
| GTAGAACCTCCTACCTGGCG+AGG | 0.655780 | 8.3:-19850034 | None:intergenic |
| CTAGGGTCAGAACTCCAACT+GGG | 0.658230 | 8.3:-19849751 | None:intergenic |
| AGTAAGAAAGTACGCCATTG+CGG | 0.662553 | 8.3:-19843265 | None:intergenic |
| CCAGGCTGAGACCTGATCAA+CGG | 0.663381 | 8.3:+19851405 | MS.gene71922:CDS |
| TGCATATCCAGAAACAGCAA+AGG | 0.663498 | 8.3:-19848814 | None:intergenic |
| GCAAAGGATGGAGATCCCGA+TGG | 0.666798 | 8.3:+19843234 | MS.gene71922:CDS |
| TCAACGGCACTTAGAGAATG+GGG | 0.669553 | 8.3:+19851421 | MS.gene71922:CDS |
| CAGCAACGTTCAATGCCCGA+AGG | 0.671551 | 8.3:-19848791 | None:intergenic |
| AAAATGGCTGGGAACCTAGG+TGG | 0.671755 | 8.3:+19852355 | MS.gene71922:CDS |
| AAGAAAGTACGCCATTGCGG+AGG | 0.672163 | 8.3:-19843262 | None:intergenic |
| ATCCCACTTGCCAAATAATG+TGG | 0.674658 | 8.3:-19851041 | None:intergenic |
| ATACACGGCTGCACTTTCGA+GGG | 0.677693 | 8.3:+19843115 | MS.gene71922:CDS |
| CCGTGGCTTCTGATCCTCCA+CGG | 0.679159 | 8.3:-19843178 | None:intergenic |
| ATATATCTGTATCAACTGAG+AGG | 0.679661 | 8.3:+19845097 | MS.gene71922:CDS |
| ATTGTGAAGGTAGAGGATGG+AGG | 0.682063 | 8.3:+19849672 | MS.gene71922:CDS |
| AGAGCTGTAGGATCATGGGA+TGG | 0.683308 | 8.3:+19852435 | MS.gene71922:CDS |
| TCTGACTGCATTGTTCGCCG+TGG | 0.685403 | 8.3:+19843161 | MS.gene71922:CDS |
| GCAGCTAACCTTGAACCCGA+GGG | 0.688367 | 8.3:+19846618 | MS.gene71922:CDS |
| TCCATCCTCTACCTTCACAA+TGG | 0.688384 | 8.3:-19849670 | None:intergenic |
| GCTATCAGAATGCAGTACAA+CGG | 0.696464 | 8.3:+19847696 | MS.gene71922:intron |
| TCAATGATCAAAGACAATGT+GGG | 0.707465 | 8.3:+19848003 | MS.gene71922:CDS |
| GAAGCCGACTTTCCTGACAA+AGG | 0.708212 | 8.3:+19848891 | MS.gene71922:CDS |
| GGTTAGTCACCATCCAACTG+TGG | 0.711984 | 8.3:+19849640 | MS.gene71922:intron |
| AAATCGAGTGAACATGTCTG+CGG | 0.724062 | 8.3:+19847843 | MS.gene71922:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19843038 | 19852518 | 19843038 | ID=MS.gene71922 |
| chr8.3 | mRNA | 19843038 | 19852518 | 19843038 | ID=MS.gene71922.t1;Parent=MS.gene71922 |
| chr8.3 | exon | 19843038 | 19843466 | 19843038 | ID=MS.gene71922.t1.exon1;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19843038 | 19843466 | 19843038 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19844919 | 19845272 | 19844919 | ID=MS.gene71922.t1.exon2;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19844919 | 19845272 | 19844919 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19846618 | 19846714 | 19846618 | ID=MS.gene71922.t1.exon3;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19846618 | 19846714 | 19846618 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19847704 | 19848149 | 19847704 | ID=MS.gene71922.t1.exon4;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19847704 | 19848149 | 19847704 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19848780 | 19848935 | 19848780 | ID=MS.gene71922.t1.exon5;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19848780 | 19848935 | 19848780 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19849641 | 19849808 | 19849641 | ID=MS.gene71922.t1.exon6;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19849641 | 19849808 | 19849641 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19849902 | 19850042 | 19849902 | ID=MS.gene71922.t1.exon7;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19849902 | 19850042 | 19849902 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19851001 | 19851228 | 19851001 | ID=MS.gene71922.t1.exon8;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19851001 | 19851228 | 19851001 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19851383 | 19851496 | 19851383 | ID=MS.gene71922.t1.exon9;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19851383 | 19851496 | 19851383 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| chr8.3 | exon | 19852339 | 19852518 | 19852339 | ID=MS.gene71922.t1.exon10;Parent=MS.gene71922.t1 |
| chr8.3 | CDS | 19852339 | 19852518 | 19852339 | ID=cds.MS.gene71922.t1;Parent=MS.gene71922.t1 |
| Gene Sequence |
| Protein sequence |
