Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72612.t1 | XP_003614315.1 | 99.2 | 129 | 1 | 0 | 1 | 129 | 1 | 129 | 1.30E-62 | 248.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72612.t1 | G7JZ88 | 99.2 | 129 | 1 | 0 | 1 | 129 | 1 | 129 | 9.7e-63 | 248.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene72612 | 0.808525 | 2.97E-50 | -1.69E-46 |
| MS.gene049680 | MS.gene72612 | 0.812438 | 4.24E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene72612 | 0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene050752 | MS.gene72612 | 0.824716 | 6.94E-54 | -1.69E-46 |
| MS.gene050955 | MS.gene72612 | 0.822315 | 2.53E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene72612 | 0.817948 | 2.53E-52 | -1.69E-46 |
| MS.gene051330 | MS.gene72612 | 0.80236 | 5.82E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene72612 | 0.822977 | 1.77E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene72612 | 0.82562 | 4.24E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene72612 | 0.809643 | 1.71E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene72612 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene052941 | MS.gene72612 | 0.814803 | 1.28E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene72612 | 0.83723 | 5.87E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene72612 | 0.82731 | 1.68E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene72612 | 0.83028 | 3.21E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene72612 | 0.813142 | 2.97E-51 | -1.69E-46 |
| MS.gene057694 | MS.gene72612 | 0.858252 | 9.36E-63 | -1.69E-46 |
| MS.gene057705 | MS.gene72612 | 0.850774 | 1.37E-60 | -1.69E-46 |
| MS.gene058238 | MS.gene72612 | 0.80755 | 4.79E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene72612 | 0.826985 | 2.01E-54 | -1.69E-46 |
| MS.gene060429 | MS.gene72612 | 0.807074 | 6.04E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene72612 | 0.814745 | 1.32E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72612.t1 | MTR_5g048060 | 99.225 | 129 | 1 | 0 | 1 | 129 | 1 | 129 | 4.74e-92 | 262 |
| MS.gene72612.t1 | MTR_6g071330 | 98.450 | 129 | 2 | 0 | 1 | 129 | 1 | 129 | 1.41e-91 | 261 |
| MS.gene72612.t1 | MTR_6g071330 | 100.000 | 85 | 0 | 0 | 1 | 85 | 1 | 85 | 1.40e-57 | 174 |
| MS.gene72612.t1 | MTR_5g048060 | 97.260 | 73 | 2 | 0 | 57 | 129 | 21 | 93 | 4.69e-49 | 152 |
| MS.gene72612.t1 | MTR_8g104980 | 40.945 | 127 | 75 | 0 | 1 | 127 | 1 | 127 | 1.68e-26 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72612.t1 | AT1G48440 | 67.442 | 129 | 42 | 0 | 1 | 129 | 1 | 129 | 8.29e-64 | 191 |
| MS.gene72612.t1 | AT3G17780 | 65.891 | 129 | 44 | 0 | 1 | 129 | 1 | 129 | 3.28e-56 | 171 |
| MS.gene72612.t1 | AT5G17190 | 40.310 | 129 | 77 | 0 | 1 | 129 | 1 | 129 | 6.46e-31 | 107 |
| MS.gene72612.t1 | AT3G03160 | 39.535 | 129 | 78 | 0 | 1 | 129 | 1 | 129 | 6.43e-30 | 105 |
Find 22 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTGGGTTTCAGCTTCT+TGG | 0.198760 | 6.4:+48786235 | MS.gene72612:CDS |
| CCATGCTTTGAATATCCTTC+TGG | 0.286675 | 6.4:-48790259 | None:intergenic |
| TTGCAGCATGCCTACTCTAT+TGG | 0.401049 | 6.4:+48789934 | MS.gene72612:CDS |
| GTTTGTTTGTAGATATATAC+TGG | 0.433318 | 6.4:+48788918 | MS.gene72612:intron |
| AAACGGTTCCTCAAAAGCTT+TGG | 0.438768 | 6.4:-48786163 | None:intergenic |
| AGAAGCTGAAACCCAGCAAA+GGG | 0.457118 | 6.4:-48786232 | None:intergenic |
| GCGAAATCAGAGAAGTCAAA+CGG | 0.558473 | 6.4:-48786180 | None:intergenic |
| ATTCACTTTACCAATAGAGT+AGG | 0.563900 | 6.4:-48789944 | None:intergenic |
| GTTTGTAGATATATACTGGA+AGG | 0.575505 | 6.4:+48788922 | MS.gene72612:intron |
| TTCCTCAAAAGCTTTGGTGA+AGG | 0.577938 | 6.4:-48786157 | None:intergenic |
| AAGGGGACAATGAAAAGCGC+AGG | 0.586062 | 6.4:-48786214 | None:intergenic |
| AAGAAGCTGAAACCCAGCAA+AGG | 0.595675 | 6.4:-48786233 | None:intergenic |
| CCAGAAGGATATTCAAAGCA+TGG | 0.600664 | 6.4:+48790259 | MS.gene72612:CDS |
| CATAAGCGATGGCATTGCAG+TGG | 0.602700 | 6.4:+48786077 | None:intergenic |
| TCGCATTTGCAAGTTCCAGA+AGG | 0.619635 | 6.4:+48790244 | MS.gene72612:CDS |
| TATACTGGAAGGCTGAGCAT+AGG | 0.629820 | 6.4:+48788933 | MS.gene72612:CDS |
| AGCTTCAATAGCCACCACAT+AGG | 0.668450 | 6.4:-48786110 | None:intergenic |
| GAAGCTGAAACCCAGCAAAG+GGG | 0.673524 | 6.4:-48786231 | None:intergenic |
| AGCAGCAGTACAAACATCAG+AGG | 0.677855 | 6.4:-48788966 | None:intergenic |
| GTGGATGATACTCACCTATG+TGG | 0.692942 | 6.4:+48786096 | MS.gene72612:CDS |
| GATGATACTCACCTATGTGG+TGG | 0.722992 | 6.4:+48786099 | MS.gene72612:CDS |
| GAAGGATATTCAAAGCATGG+AGG | 0.736068 | 6.4:+48790262 | MS.gene72612:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGAGAAATATAAATTT+TGG | + | chr6.4:48790126-48790145 | MS.gene72612:intron | 10.0% |
| !!! | TAATGATTTAGAATAAAATT+CGG | - | chr6.4:48787579-48787598 | None:intergenic | 10.0% |
| !! | ATGTATATTTGAACATAATT+TGG | + | chr6.4:48788554-48788573 | MS.gene72612:intron | 15.0% |
| !! | ATTTACTATATAAATGTCAT+AGG | - | chr6.4:48789561-48789580 | None:intergenic | 15.0% |
| !! | GAATATATATAGAAGTAATA+AGG | - | chr6.4:48789433-48789452 | None:intergenic | 15.0% |
| !! | TTTACTATATAAATGTCATA+GGG | - | chr6.4:48789560-48789579 | None:intergenic | 15.0% |
| !! | TTTATTTGTGTTCAAAATTA+TGG | - | chr6.4:48788491-48788510 | None:intergenic | 15.0% |
| !!! | AATAATTCGAATTTTGTTTT+TGG | + | chr6.4:48789999-48790018 | MS.gene72612:intron | 15.0% |
| !!! | AATGTTTAATTTTTGAGTTT+TGG | + | chr6.4:48786326-48786345 | MS.gene72612:intron | 15.0% |
| !!! | ATGTTTAATTTTTGAGTTTT+GGG | + | chr6.4:48786327-48786346 | MS.gene72612:intron | 15.0% |
| !!! | ATTTTGAATGTTTTTCAATT+TGG | + | chr6.4:48786542-48786561 | MS.gene72612:intron | 15.0% |
| !!! | TAATGATTTAGAATAGAATT+CGG | + | chr6.4:48787649-48787668 | MS.gene72612:intron | 15.0% |
| !!! | TTAAATCGTTTTTTCAATTT+GGG | + | chr6.4:48786846-48786865 | MS.gene72612:intron | 15.0% |
| !!! | TTTAAATCGTTTTTTCAATT+TGG | + | chr6.4:48786845-48786864 | MS.gene72612:intron | 15.0% |
| !!! | TTTCTTCTTTTTGATTTAAT+GGG | + | chr6.4:48786263-48786282 | MS.gene72612:intron | 15.0% |
| !!! | TTTTCTTCTTTTTGATTTAA+TGG | + | chr6.4:48786262-48786281 | MS.gene72612:intron | 15.0% |
| !!! | TTTTGAATGTTTTTCAATTT+GGG | + | chr6.4:48786543-48786562 | MS.gene72612:intron | 15.0% |
| !!! | TTTTTATCTAAATGAAAACA+TGG | + | chr6.4:48790200-48790219 | MS.gene72612:intron | 15.0% |
| !! | AAAGTTACAAAATTAATACC+GGG | + | chr6.4:48789313-48789332 | MS.gene72612:intron | 20.0% |
| !! | AAATTAGATAACACAAATTC+AGG | - | chr6.4:48788295-48788314 | None:intergenic | 20.0% |
| !! | AATTTCATACGAAATAAAAC+AGG | - | chr6.4:48786289-48786308 | None:intergenic | 20.0% |
| !! | AATTTCGACATCAATATAAA+TGG | + | chr6.4:48788346-48788365 | MS.gene72612:intron | 20.0% |
| !! | ATATTTGAACATAATTTGGA+TGG | + | chr6.4:48788558-48788577 | MS.gene72612:intron | 20.0% |
| !! | ATTGATATGATACATTATCT+TGG | + | chr6.4:48787268-48787287 | MS.gene72612:intron | 20.0% |
| !! | ATTTAAACACTTGAAAATTG+TGG | + | chr6.4:48788598-48788617 | MS.gene72612:intron | 20.0% |
| !! | CAAAAGATCTATATATCATA+GGG | + | chr6.4:48788241-48788260 | MS.gene72612:intron | 20.0% |
| !! | CCAAAATCAAATGTAAATTT+CGG | + | chr6.4:48789341-48789360 | MS.gene72612:intron | 20.0% |
| !! | CTAAATCATTAGAATTACTA+GGG | - | chr6.4:48787640-48787659 | None:intergenic | 20.0% |
| !! | GAAAAAAATTGTTATCAAAC+AGG | - | chr6.4:48788016-48788035 | None:intergenic | 20.0% |
| !! | GAAAGTTACAAAATTAATAC+CGG | + | chr6.4:48789312-48789331 | MS.gene72612:intron | 20.0% |
| !! | GTTTATAACGTTCAAAATTA+TGG | - | chr6.4:48788469-48788488 | None:intergenic | 20.0% |
| !! | TAAAAGAGTAAAATGACATA+AGG | - | chr6.4:48787430-48787449 | None:intergenic | 20.0% |
| !! | TATTTCGTATGAAATTTGAT+GGG | + | chr6.4:48786293-48786312 | MS.gene72612:intron | 20.0% |
| !! | TCAAAAGATCTATATATCAT+AGG | + | chr6.4:48788240-48788259 | MS.gene72612:intron | 20.0% |
| !! | TCTAAATCATTAGAATTACT+AGG | - | chr6.4:48787641-48787660 | None:intergenic | 20.0% |
| !! | TTATTTCGTATGAAATTTGA+TGG | + | chr6.4:48786292-48786311 | MS.gene72612:intron | 20.0% |
| !! | TTCAAATATACATGATTATC+AGG | - | chr6.4:48788547-48788566 | None:intergenic | 20.0% |
| !!! | AATTTCTTGTTTTTCTGTAA+TGG | + | chr6.4:48786376-48786395 | MS.gene72612:intron | 20.0% |
| !!! | AATTTTGTGTGAAAATTGAT+GGG | + | chr6.4:48786407-48786426 | MS.gene72612:intron | 20.0% |
| !!! | AGTATTGAATGATAGTTTTA+GGG | + | chr6.4:48787697-48787716 | MS.gene72612:intron | 20.0% |
| !!! | ATATAGATCTTTTGATAAAG+TGG | - | chr6.4:48788235-48788254 | None:intergenic | 20.0% |
| !!! | ATTAATGATTTCAAGTATAC+TGG | + | chr6.4:48789129-48789148 | MS.gene72612:intron | 20.0% |
| !!! | ATTAATTTGATACAATACCT+TGG | - | chr6.4:48787205-48787224 | None:intergenic | 20.0% |
| !!! | ATTTCTTGTTTTTCTGTAAT+GGG | + | chr6.4:48786377-48786396 | MS.gene72612:intron | 20.0% |
| !!! | GAAAACTGTAAGTAATTTTA+CGG | + | chr6.4:48789006-48789025 | MS.gene72612:intron | 20.0% |
| !!! | GATTTTATCAAATTTCACTA+CGG | - | chr6.4:48789680-48789699 | None:intergenic | 20.0% |
| !!! | TAATTTTGTGTGAAAATTGA+TGG | + | chr6.4:48786406-48786425 | MS.gene72612:intron | 20.0% |
| !!! | TAGTATTGAATGATAGTTTT+AGG | + | chr6.4:48787696-48787715 | MS.gene72612:intron | 20.0% |
| !!! | TCTTATTCTTTTTAATTGTG+TGG | + | chr6.4:48786930-48786949 | MS.gene72612:intron | 20.0% |
| !!! | TGAGAAATATAAATTTTGGA+TGG | + | chr6.4:48790130-48790149 | MS.gene72612:intron | 20.0% |
| !!! | TTGAATCTTTTTTGAAACTT+GGG | + | chr6.4:48788102-48788121 | MS.gene72612:intron | 20.0% |
| !!! | TTTAAGATTACTAGTTATCT+GGG | + | chr6.4:48786647-48786666 | MS.gene72612:intron | 20.0% |
| !!! | TTTGAATCTTTTTTGAAACT+TGG | + | chr6.4:48788101-48788120 | MS.gene72612:intron | 20.0% |
| !!! | TTTTAAGATTACTAGTTATC+TGG | + | chr6.4:48786646-48786665 | MS.gene72612:intron | 20.0% |
| ! | AATCATAAAATGTGAAACTC+TGG | + | chr6.4:48789834-48789853 | MS.gene72612:intron | 25.0% |
| ! | ACAATACCAACATTCATTAT+AGG | - | chr6.4:48790174-48790193 | None:intergenic | 25.0% |
| ! | ATATATGGTTAATTACGTTC+AGG | - | chr6.4:48788709-48788728 | None:intergenic | 25.0% |
| ! | ATATGATACATTATCTTGGA+TGG | + | chr6.4:48787272-48787291 | MS.gene72612:intron | 25.0% |
| ! | CAATACCAACATTCATTATA+GGG | - | chr6.4:48790173-48790192 | None:intergenic | 25.0% |
| ! | GTTCAAGCAGTTTAAATATA+TGG | - | chr6.4:48788724-48788743 | None:intergenic | 25.0% |
| ! | GTTTGTTTGTAGATATATAC+TGG | + | chr6.4:48788918-48788937 | MS.gene72612:intron | 25.0% |
| ! | TAAAATGATGTTCAAAGTAG+TGG | + | chr6.4:48788622-48788641 | MS.gene72612:intron | 25.0% |
| ! | TATATGGTTAATTACGTTCA+GGG | - | chr6.4:48788708-48788727 | None:intergenic | 25.0% |
| ! | TGATTAATTATCTTGGTATG+TGG | + | chr6.4:48786508-48786527 | MS.gene72612:intron | 25.0% |
| ! | TTAGGGATGATTATTTATCT+GGG | + | chr6.4:48788057-48788076 | MS.gene72612:intron | 25.0% |
| ! | TTGAAATCTCAAAATGACAA+TGG | - | chr6.4:48788795-48788814 | None:intergenic | 25.0% |
| ! | TTTAACCCTATAATGAATGT+TGG | + | chr6.4:48790165-48790184 | MS.gene72612:intron | 25.0% |
| ! | TTTAGGGATGATTATTTATC+TGG | + | chr6.4:48788056-48788075 | MS.gene72612:intron | 25.0% |
| ! | TTTGTAGAGACAAAAAAATG+AGG | - | chr6.4:48790031-48790050 | None:intergenic | 25.0% |
| !! | ACTTGAGATTTGGATTTTAT+CGG | + | chr6.4:48787609-48787628 | MS.gene72612:intron | 25.0% |
| !! | AGTTTCACATTTTATGATTG+AGG | - | chr6.4:48789833-48789852 | None:intergenic | 25.0% |
| !! | ATATTGATTGATTGCAAATG+AGG | - | chr6.4:48787486-48787505 | None:intergenic | 25.0% |
| !! | ATTCAATTGATAAGCTTTTG+GGG | + | chr6.4:48786622-48786641 | MS.gene72612:intron | 25.0% |
| !! | CAAATTGCATGTTCTTTTTA+AGG | + | chr6.4:48790054-48790073 | MS.gene72612:intron | 25.0% |
| !! | CTAGATTCATAAGTTGAATA+GGG | + | chr6.4:48788142-48788161 | MS.gene72612:intron | 25.0% |
| !! | GATTCAATTGATAAGCTTTT+GGG | + | chr6.4:48786621-48786640 | MS.gene72612:intron | 25.0% |
| !! | GGAAATTGTTGAAGTTTTTA+GGG | + | chr6.4:48786475-48786494 | MS.gene72612:intron | 25.0% |
| !! | TGATTCAATTGATAAGCTTT+TGG | + | chr6.4:48786620-48786639 | MS.gene72612:intron | 25.0% |
| !! | TGGAAATTGTTGAAGTTTTT+AGG | + | chr6.4:48786474-48786493 | MS.gene72612:intron | 25.0% |
| !! | TTAGGGTTGATTAATTATCT+TGG | + | chr6.4:48786501-48786520 | MS.gene72612:intron | 25.0% |
| !!! | AAATTGTTGAAGTTTTTAGG+GGG | + | chr6.4:48786477-48786496 | MS.gene72612:intron | 25.0% |
| !!! | AATAAATCTTCGAAAGCATT+TGG | + | chr6.4:48789189-48789208 | MS.gene72612:intron | 25.0% |
| !!! | AATCTGGTGTTATTAAATAG+CGG | + | chr6.4:48789649-48789668 | MS.gene72612:intron | 25.0% |
| !!! | ATTTTACTCTTTTAGCTTTG+AGG | + | chr6.4:48787436-48787455 | MS.gene72612:intron | 25.0% |
| !!! | CCGAAATTTACATTTGATTT+TGG | - | chr6.4:48789344-48789363 | None:intergenic | 25.0% |
| !!! | GAAATTGTTGAAGTTTTTAG+GGG | + | chr6.4:48786476-48786495 | MS.gene72612:intron | 25.0% |
| !!! | TTTTACTCTTTTAGCTTTGA+GGG | + | chr6.4:48787437-48787456 | MS.gene72612:intron | 25.0% |
| AACAGTTAAACTTATGTGCA+GGG | - | chr6.4:48789382-48789401 | None:intergenic | 30.0% | |
| AAGTTTAAATACAACCCTCA+AGG | + | chr6.4:48787776-48787795 | MS.gene72612:intron | 30.0% | |
| ATATGGTTAATTACGTTCAG+GGG | - | chr6.4:48788707-48788726 | None:intergenic | 30.0% | |
| ATTCACTTTACCAATAGAGT+AGG | - | chr6.4:48789947-48789966 | None:intergenic | 30.0% | |
| CACTTAGATTCTATTTGGAA+AGG | + | chr6.4:48787931-48787950 | MS.gene72612:intron | 30.0% | |
| CTTCTAATCAAAGTCATGAA+AGG | - | chr6.4:48786787-48786806 | None:intergenic | 30.0% | |
| CTTTCCAAATAGAATCTAAG+TGG | - | chr6.4:48787933-48787952 | None:intergenic | 30.0% | |
| GAAATCATTAATCCAAGCTA+TGG | - | chr6.4:48789121-48789140 | None:intergenic | 30.0% | |
| GTTTGTAGATATATACTGGA+AGG | + | chr6.4:48788922-48788941 | MS.gene72612:intron | 30.0% | |
| TAAAAGAGTAAACTGACGTA+AGG | + | chr6.4:48787800-48787819 | MS.gene72612:intron | 30.0% | |
| TAACAGTTAAACTTATGTGC+AGG | - | chr6.4:48789383-48789402 | None:intergenic | 30.0% | |
| TAGAAGTAATAAGGACATGA+AGG | - | chr6.4:48789424-48789443 | None:intergenic | 30.0% | |
| TCTAAATGAAAACATGGACA+TGG | + | chr6.4:48790206-48790225 | MS.gene72612:intron | 30.0% | |
| TGAGAAGATCCATATATCAT+CGG | + | chr6.4:48786968-48786987 | MS.gene72612:intron | 30.0% | |
| TGATTATTTATCTGGGTATG+TGG | + | chr6.4:48788064-48788083 | MS.gene72612:intron | 30.0% | |
| TGCATATCACAGAAAATAGT+GGG | - | chr6.4:48789797-48789816 | None:intergenic | 30.0% | |
| TTGAGGGTTGTATTTAAACT+TGG | - | chr6.4:48787472-48787453 | None:intergenic | 30.0% | |
| TTGCATATCACAGAAAATAG+TGG | - | chr6.4:48789798-48789817 | None:intergenic | 30.0% | |
| TTGGAATTTGAAAACGACAA+CGG | + | chr6.4:48787081-48787100 | MS.gene72612:intron | 30.0% | |
| ! | ACATTCTTTGCATGTTTCTA+AGG | + | chr6.4:48789238-48789257 | MS.gene72612:intron | 30.0% |
| ! | AGTGAATTTCTGTGTCTTTT+TGG | + | chr6.4:48789960-48789979 | MS.gene72612:intron | 30.0% |
| ! | ATATCGATTGATTGCAAATG+AGG | + | chr6.4:48787744-48787763 | MS.gene72612:intron | 30.0% |
| ! | GCTAGATTCATAAGTTGAAT+AGG | + | chr6.4:48788141-48788160 | MS.gene72612:intron | 30.0% |
| ! | GTTATCAAACAGGTCTATTT+TGG | - | chr6.4:48788006-48788025 | None:intergenic | 30.0% |
| ! | GTTTCATGCACTTTTATGAT+TGG | + | chr6.4:48789290-48789309 | MS.gene72612:intron | 30.0% |
| ! | GTTTCTGTTTGTTGATTGTT+TGG | + | chr6.4:48788202-48788221 | MS.gene72612:intron | 30.0% |
| ! | TAAGCTTCTTTAGAGAAATG+AGG | - | chr6.4:48787023-48787042 | None:intergenic | 30.0% |
| ! | TAAGTTGAAGTTGAAAAACG+TGG | - | chr6.4:48788835-48788854 | None:intergenic | 30.0% |
| ! | TTCAATTGATAAGCTTTTGG+GGG | + | chr6.4:48786623-48786642 | MS.gene72612:intron | 30.0% |
| ! | TTCTCTAAAGAAGCTTAAGT+TGG | + | chr6.4:48787026-48787045 | MS.gene72612:intron | 30.0% |
| !! | AACATCTTTGCTTTGAGTTT+TGG | + | chr6.4:48786438-48786457 | MS.gene72612:intron | 30.0% |
| !! | ACATCTTTGCTTTGAGTTTT+GGG | + | chr6.4:48786439-48786458 | MS.gene72612:intron | 30.0% |
| !! | ATATCATAGGGTACTTTTGT+GGG | + | chr6.4:48788253-48788272 | MS.gene72612:intron | 30.0% |
| !! | GAATGTTTTTCAATTTGGGA+TGG | + | chr6.4:48786547-48786566 | MS.gene72612:intron | 30.0% |
| !! | TAGCGTTGAAATTTTGACAA+CGG | - | chr6.4:48787904-48787923 | None:intergenic | 30.0% |
| !! | TATATCATAGGGTACTTTTG+TGG | + | chr6.4:48788252-48788271 | MS.gene72612:intron | 30.0% |
| !! | TCGAAAGCATTTGGTAATAA+AGG | + | chr6.4:48789198-48789217 | MS.gene72612:intron | 30.0% |
| !!! | ATTTTTGAGTTTTGGGTTTG+TGG | + | chr6.4:48786334-48786353 | MS.gene72612:intron | 30.0% |
| !!! | CAATTTGGGATGGATTTTTT+TGG | + | chr6.4:48786557-48786576 | MS.gene72612:intron | 30.0% |
| !!! | TTTTTGAGTTTTGGGTTTGT+GGG | + | chr6.4:48786335-48786354 | MS.gene72612:intron | 30.0% |
| AAACTTGGGATGAATTGTGT+TGG | + | chr6.4:48788116-48788135 | MS.gene72612:intron | 35.0% | |
| AAGGAAGATTGTGAAATGCA+TGG | + | chr6.4:48787123-48787142 | MS.gene72612:intron | 35.0% | |
| AAGTTGAATAGGGCTTAAGA+GGG | + | chr6.4:48788152-48788171 | MS.gene72612:intron | 35.0% | |
| AATGGAAAATGAGTCGAGTT+GGG | - | chr6.4:48788777-48788796 | None:intergenic | 35.0% | |
| ACACTTTATTCCTGTAACAG+AGG | - | chr6.4:48787376-48787395 | None:intergenic | 35.0% | |
| ATCTTCATCTCCTTATTGCT+TGG | + | chr6.4:48789469-48789488 | MS.gene72612:intron | 35.0% | |
| ATGTCTGAGCAGGAAAAAAA+TGG | - | chr6.4:48789884-48789903 | None:intergenic | 35.0% | |
| CTAGATTCAGAAGTTGAGTA+GGG | + | chr6.4:48786886-48786905 | MS.gene72612:intron | 35.0% | |
| GAACACAATAGCCACATATT+TGG | - | chr6.4:48788382-48788401 | None:intergenic | 35.0% | |
| GAATTCGTACACTTGAGATT+TGG | + | chr6.4:48787599-48787618 | MS.gene72612:intron | 35.0% | |
| GAGAAGATCCATATATCATC+GGG | + | chr6.4:48786969-48786988 | MS.gene72612:intron | 35.0% | |
| GTTAATGCAGTCCAAATATG+TGG | + | chr6.4:48788368-48788387 | MS.gene72612:intron | 35.0% | |
| TCCAAATAGAATCTAAGTGG+TGG | - | chr6.4:48787930-48787949 | None:intergenic | 35.0% | |
| TCCACCACTTAGATTCTATT+TGG | + | chr6.4:48787926-48787945 | MS.gene72612:intron | 35.0% | |
| TGGAATTTGAAAACGACAAC+GGG | + | chr6.4:48787082-48787101 | MS.gene72612:intron | 35.0% | |
| TTGTACTAGATAGCGTATCA+CGG | - | chr6.4:48789712-48789731 | None:intergenic | 35.0% | |
| TTTATTCCTGTAACAGAGGA+AGG | - | chr6.4:48787372-48787391 | None:intergenic | 35.0% | |
| ! | AAGTAGTGGTTAGTTGTGTT+CGG | + | chr6.4:48788636-48788655 | MS.gene72612:intron | 35.0% |
| ! | ATATCATCGGGTACTTTTGT+GGG | + | chr6.4:48786981-48787000 | MS.gene72612:intron | 35.0% |
| ! | CAATTTGGGATGAATTGTGT+TGG | + | chr6.4:48786860-48786879 | MS.gene72612:intron | 35.0% |
| ! | CTGTTTGTTGATTGTTTGGT+AGG | + | chr6.4:48788206-48788225 | MS.gene72612:intron | 35.0% |
| ! | GCATGTTTCTAAGGATTTGT+TGG | + | chr6.4:48789247-48789266 | MS.gene72612:intron | 35.0% |
| ! | TAAGTTGAATAGGGCTTAAG+AGG | + | chr6.4:48788151-48788170 | MS.gene72612:intron | 35.0% |
| ! | TAAGTTGGAGTTGAAAAAGG+AGG | + | chr6.4:48787041-48787060 | MS.gene72612:intron | 35.0% |
| ! | TAGTCTCTGTATGCACTTTT+AGG | - | chr6.4:48790106-48790125 | None:intergenic | 35.0% |
| ! | TATATCATCGGGTACTTTTG+TGG | + | chr6.4:48786980-48786999 | MS.gene72612:intron | 35.0% |
| ! | TTGGTTGCTAGATTCACTTT+TGG | + | chr6.4:48786576-48786595 | MS.gene72612:intron | 35.0% |
| !! | AGCTTGTGGTGGATAATTTA+GGG | + | chr6.4:48788040-48788059 | MS.gene72612:intron | 35.0% |
| !! | CAAAAGTACCCGATGATATA+TGG | - | chr6.4:48786980-48786999 | None:intergenic | 35.0% |
| !! | GATGGTTGATGACTATCAAA+AGG | - | chr6.4:48788685-48788704 | None:intergenic | 35.0% |
| !! | GCTTAAGTTGGAGTTGAAAA+AGG | + | chr6.4:48787038-48787057 | MS.gene72612:intron | 35.0% |
| !! | GTTTGTTGTTGACTTCAATC+TGG | + | chr6.4:48789633-48789652 | MS.gene72612:intron | 35.0% |
| !! | TGAAATTTTGACAACGGCAA+CGG | - | chr6.4:48787898-48787917 | None:intergenic | 35.0% |
| !! | TGAAGTTTTTAGGGGGTTTA+GGG | + | chr6.4:48786484-48786503 | MS.gene72612:intron | 35.0% |
| !! | TGGTTGCTAGATTCACTTTT+GGG | + | chr6.4:48786577-48786596 | MS.gene72612:intron | 35.0% |
| !! | TGTGAAAATTGATGGGTTTG+TGG | + | chr6.4:48786414-48786433 | MS.gene72612:intron | 35.0% |
| !! | TTGAAGTTTTTAGGGGGTTT+AGG | + | chr6.4:48786483-48786502 | MS.gene72612:intron | 35.0% |
| !!! | AATTTTTTTCCACCAGCTTG+TGG | + | chr6.4:48788026-48788045 | MS.gene72612:intron | 35.0% |
| !!! | AGTTTACTCTTTTAGCCTTG+AGG | - | chr6.4:48787794-48787813 | None:intergenic | 35.0% |
| !!! | CATTTGATTTTGGTTCTTCC+CGG | - | chr6.4:48789334-48789353 | None:intergenic | 35.0% |
| !!! | GTTTACTCTTTTAGCCTTGA+GGG | - | chr6.4:48787793-48787812 | None:intergenic | 35.0% |
| AAAACGACAACGGGAAAAGT+TGG | + | chr6.4:48787091-48787110 | MS.gene72612:intron | 40.0% | |
| AAACGACAACGGGAAAAGTT+GGG | + | chr6.4:48787092-48787111 | MS.gene72612:intron | 40.0% | |
| AAACGGTTCCTCAAAAGCTT+TGG | - | chr6.4:48786166-48786185 | None:intergenic | 40.0% | |
| AAGGTTGTGAAACACATTGG+GGG | - | chr6.4:48787353-48787372 | None:intergenic | 40.0% | |
| AATGACACAATCACGTGTGT+CGG | + | chr6.4:48786735-48786754 | MS.gene72612:intron | 40.0% | |
| ACATTATCTTGGATGGAGAG+TGG | + | chr6.4:48787279-48787298 | MS.gene72612:intron | 40.0% | |
| AGGAAGGTTGTGAAACACAT+TGG | - | chr6.4:48787356-48787375 | None:intergenic | 40.0% | |
| ATTATCTTGGATGGAGAGTG+GGG | + | chr6.4:48787281-48787300 | MS.gene72612:intron | 40.0% | |
| CAATGGAAAATGAGTCGAGT+TGG | - | chr6.4:48788778-48788797 | None:intergenic | 40.0% | |
| CAGAGAGAAACAAAGATCAG+TGG | - | chr6.4:48787175-48787194 | None:intergenic | 40.0% | |
| CATTATCTTGGATGGAGAGT+GGG | + | chr6.4:48787280-48787299 | MS.gene72612:intron | 40.0% | |
| CCAGAAGGATATTCAAAGCA+TGG | + | chr6.4:48790259-48790278 | MS.gene72612:CDS | 40.0% | |
| CTAAATTATCCACCACAAGC+TGG | - | chr6.4:48788041-48788060 | None:intergenic | 40.0% | |
| GAAAAGTTGGGTAGGTAGAA+AGG | + | chr6.4:48787104-48787123 | MS.gene72612:intron | 40.0% | |
| GAAGGATATTCAAAGCATGG+AGG | + | chr6.4:48790262-48790281 | MS.gene72612:CDS | 40.0% | |
| GAAGGTTGTGAAACACATTG+GGG | - | chr6.4:48787354-48787373 | None:intergenic | 40.0% | |
| GATGATGAAAGACCATAGCT+TGG | + | chr6.4:48789106-48789125 | MS.gene72612:intron | 40.0% | |
| GCGAAATCAGAGAAGTCAAA+CGG | - | chr6.4:48786183-48786202 | None:intergenic | 40.0% | |
| GCTAGATTCAGAAGTTGAGT+AGG | + | chr6.4:48786885-48786904 | MS.gene72612:intron | 40.0% | |
| GGAAGGTTGTGAAACACATT+GGG | - | chr6.4:48787355-48787374 | None:intergenic | 40.0% | |
| GTTGAAGTTGAAAAACGTGG+TGG | - | chr6.4:48788832-48788851 | None:intergenic | 40.0% | |
| TACCATCAAGCCAAGCAATA+AGG | - | chr6.4:48789482-48789501 | None:intergenic | 40.0% | |
| TATGTGGCTATTGTGTTCAG+TGG | + | chr6.4:48788384-48788403 | MS.gene72612:intron | 40.0% | |
| TCTTGGTATGTGGTTGATTG+TGG | + | chr6.4:48786518-48786537 | MS.gene72612:intron | 40.0% | |
| TTACTAGTTATCTGGGTGTC+TGG | + | chr6.4:48786654-48786673 | MS.gene72612:intron | 40.0% | |
| TTGATTGCAAATGAGGCACA+AGG | + | chr6.4:48787751-48787770 | MS.gene72612:intron | 40.0% | |
| TTGATTGCAAATGAGGCACA+AGG | - | chr6.4:48787770-48787751 | None:intergenic | 40.0% | |
| TTTCTCTCTGTCTTCATCCA+AGG | + | chr6.4:48787185-48787204 | MS.gene72612:intron | 40.0% | |
| ! | AAAATCTAGCTTGTAGCGGA+TGG | + | chr6.4:48787956-48787975 | MS.gene72612:intron | 40.0% |
| ! | ATCCGCTACAAGCTAGATTT+TGG | - | chr6.4:48787957-48787976 | None:intergenic | 40.0% |
| ! | CCATGCTTTGAATATCCTTC+TGG | - | chr6.4:48790262-48790281 | None:intergenic | 40.0% |
| ! | GTGTGTTGGTATGTGTAACT+CGG | - | chr6.4:48789528-48789547 | None:intergenic | 40.0% |
| ! | TTCCTCAAAAGCTTTGGTGA+AGG | - | chr6.4:48786160-48786179 | None:intergenic | 40.0% |
| ! | TTCCTTCACCAAAGCTTTTG+AGG | + | chr6.4:48786155-48786174 | MS.gene72612:CDS | 40.0% |
| ! | TTTGGGATGAATTGTGTTGG+TGG | + | chr6.4:48786863-48786882 | MS.gene72612:intron | 40.0% |
| ! | TTTTCATTGTCCCCTTTGCT+GGG | + | chr6.4:48786221-48786240 | MS.gene72612:CDS | 40.0% |
| !! | CAGCTTGTGGTGGATAATTT+AGG | + | chr6.4:48788039-48788058 | MS.gene72612:intron | 40.0% |
| !! | GAAATTTTGACAACGGCAAC+GGG | - | chr6.4:48787897-48787916 | None:intergenic | 40.0% |
| !! | GGTGGTGTTACAAATAGTGT+TGG | + | chr6.4:48787062-48787081 | MS.gene72612:intron | 40.0% |
| !! | TGCTAGATTCACTTTTGGGT+TGG | + | chr6.4:48786581-48786600 | MS.gene72612:intron | 40.0% |
| !!! | AGATTCACTTTTGGGTTGGT+GGG | + | chr6.4:48786585-48786604 | MS.gene72612:intron | 40.0% |
| !!! | GCTTTGAGTTTTGGGTTTGT+GGG | + | chr6.4:48786447-48786466 | MS.gene72612:intron | 40.0% |
| !!! | TAGATTCACTTTTGGGTTGG+TGG | + | chr6.4:48786584-48786603 | MS.gene72612:intron | 40.0% |
| !!! | TGCTTTGAGTTTTGGGTTTG+TGG | + | chr6.4:48786446-48786465 | MS.gene72612:intron | 40.0% |
| AAGAAGCTGAAACCCAGCAA+AGG | - | chr6.4:48786236-48786255 | None:intergenic | 45.0% | |
| AAGTTGAGTAGGGCTTAGGA+GGG | + | chr6.4:48786896-48786915 | MS.gene72612:intron | 45.0% | |
| AATTATCCACCACAAGCTGG+TGG | - | chr6.4:48788038-48788057 | None:intergenic | 45.0% | |
| AGAAGCTGAAACCCAGCAAA+GGG | - | chr6.4:48786235-48786254 | None:intergenic | 45.0% | |
| AGCAGCAGTACAAACATCAG+AGG | - | chr6.4:48788969-48788988 | None:intergenic | 45.0% | |
| AGCTTCAATAGCCACCACAT+AGG | - | chr6.4:48786113-48786132 | None:intergenic | 45.0% | |
| AGTGGCAATTGAAAGAGCAG+TGG | - | chr6.4:48787157-48787176 | None:intergenic | 45.0% | |
| CTTGGGATGAATTGTGTTGG+TGG | + | chr6.4:48788119-48788138 | MS.gene72612:intron | 45.0% | |
| GAAAACATGGACATGGTGAC+AGG | + | chr6.4:48790213-48790232 | MS.gene72612:intron | 45.0% | |
| GATGATACTCACCTATGTGG+TGG | + | chr6.4:48786099-48786118 | MS.gene72612:CDS | 45.0% | |
| GGCTATTGTGTTCAGTGGAT+GGG | + | chr6.4:48788389-48788408 | MS.gene72612:intron | 45.0% | |
| GGTTAATTACGTTCAGGGGA+TGG | - | chr6.4:48788703-48788722 | None:intergenic | 45.0% | |
| GTCAAACAGTGACAAATGCC+AGG | + | chr6.4:48786759-48786778 | MS.gene72612:intron | 45.0% | |
| GTGGATGATACTCACCTATG+TGG | + | chr6.4:48786096-48786115 | MS.gene72612:CDS | 45.0% | |
| GTTGGAGTTGAAAAAGGAGG+TGG | + | chr6.4:48787044-48787063 | MS.gene72612:intron | 45.0% | |
| TAAATTTCGGCCATCATCGC+AGG | + | chr6.4:48789354-48789373 | MS.gene72612:intron | 45.0% | |
| TATACTGGAAGGCTGAGCAT+AGG | + | chr6.4:48788933-48788952 | MS.gene72612:CDS | 45.0% | |
| TCACAACCTTCCTCTGTTAC+AGG | + | chr6.4:48787363-48787382 | MS.gene72612:intron | 45.0% | |
| TCAGAAGTTGAGTAGGGCTT+AGG | + | chr6.4:48786892-48786911 | MS.gene72612:intron | 45.0% | |
| TCGCATTTGCAAGTTCCAGA+AGG | + | chr6.4:48790244-48790263 | MS.gene72612:CDS | 45.0% | |
| TGGCTATTGTGTTCAGTGGA+TGG | + | chr6.4:48788388-48788407 | MS.gene72612:intron | 45.0% | |
| TTGCAGCATGCCTACTCTAT+TGG | + | chr6.4:48789934-48789953 | MS.gene72612:CDS | 45.0% | |
| TTTGCTGGGTTTCAGCTTCT+TGG | + | chr6.4:48786235-48786254 | MS.gene72612:CDS | 45.0% | |
| ! | ACTTTTGTGGGATCTACTGG+TGG | + | chr6.4:48786993-48787012 | MS.gene72612:intron | 45.0% |
| ! | CTCCTTATTGCTTGGCTTGA+TGG | + | chr6.4:48789477-48789496 | MS.gene72612:intron | 45.0% |
| ! | CTTTTCATTGTCCCCTTTGC+TGG | + | chr6.4:48786220-48786239 | MS.gene72612:CDS | 45.0% |
| ! | GGCCAAAATCTAGCTTGTAG+CGG | + | chr6.4:48787952-48787971 | MS.gene72612:intron | 45.0% |
| ! | GGTACTTTTGTGGGATCTAC+TGG | + | chr6.4:48786990-48787009 | MS.gene72612:intron | 45.0% |
| ! | TAGTGGTTAGTTGTGTTCGG+TGG | + | chr6.4:48788639-48788658 | MS.gene72612:intron | 45.0% |
| ! | TGAGCTTTGTATGTCTGAGC+AGG | - | chr6.4:48789894-48789913 | None:intergenic | 45.0% |
| !! | TAGAAGTGTCAGTGCTACAG+AGG | + | chr6.4:48786801-48786820 | MS.gene72612:intron | 45.0% |
| !! | TCAAAGTCATGAAAGGTGCC+TGG | - | chr6.4:48786780-48786799 | None:intergenic | 45.0% |
| !!! | TGAGTTTTGGGTTTGTGGGT+TGG | + | chr6.4:48786339-48786358 | MS.gene72612:intron | 45.0% |
| !!! | TTTTTTCCACCAGCTTGTGG+TGG | + | chr6.4:48788029-48788048 | MS.gene72612:intron | 45.0% |
| GAAGCTGAAACCCAGCAAAG+GGG | - | chr6.4:48786234-48786253 | None:intergenic | 50.0% | |
| GAAGTTGAGTAGGGCTTAGG+AGG | + | chr6.4:48786895-48786914 | MS.gene72612:intron | 50.0% | |
| GACAACGGGAAAAGTTGGGT+AGG | + | chr6.4:48787096-48787115 | MS.gene72612:intron | 50.0% | |
| TAGGGTGTGTGTGTGTGTGT+TGG | - | chr6.4:48789542-48789561 | None:intergenic | 50.0% | |
| ! | AAGGGGACAATGAAAAGCGC+AGG | - | chr6.4:48786217-48786236 | None:intergenic | 50.0% |
| !! | ATGAGTCGAGTTGGGTGGAA+AGG | - | chr6.4:48788769-48788788 | None:intergenic | 50.0% |
| !! | CTCGGCATCTCTTGCTTTTG+AGG | - | chr6.4:48789510-48789529 | None:intergenic | 50.0% |
| !! | GGAAAATGAGTCGAGTTGGG+TGG | - | chr6.4:48788774-48788793 | None:intergenic | 50.0% |
| !!! | GAGTTTTGGGTTTGTGGGTG+TGG | + | chr6.4:48786340-48786359 | MS.gene72612:intron | 50.0% |
| !!! | GTTTTGGGTTTGTGGGTTGG+TGG | + | chr6.4:48786454-48786473 | MS.gene72612:intron | 50.0% |
| AGTTGGGTGGAAAGGAAGGC+TGG | - | chr6.4:48788761-48788780 | None:intergenic | 55.0% | |
| GTTGGGTGGAAAGGAAGGCT+GGG | - | chr6.4:48788760-48788779 | None:intergenic | 55.0% | |
| TTGACAACGGCAACGGGAAG+CGG | - | chr6.4:48787891-48787910 | None:intergenic | 55.0% | |
| ! | CAGAGGTGTGTGGTTGGTTG+CGG | + | chr6.4:48786818-48786837 | MS.gene72612:intron | 55.0% |
| ! | GTCAGTGCTACAGAGGTGTG+TGG | + | chr6.4:48786808-48786827 | MS.gene72612:intron | 55.0% |
| ! | GTGCTACAGAGGTGTGTGGT+TGG | + | chr6.4:48786812-48786831 | MS.gene72612:intron | 55.0% |
| !! | GTCGAGTTGGGTGGAAAGGA+AGG | - | chr6.4:48788765-48788784 | None:intergenic | 55.0% |
| GGGAAGCGGTTCAAGCAGAG+AGG | - | chr6.4:48787877-48787896 | None:intergenic | 60.0% | |
| GTGCAGGGTTCCTGCGATGA+TGG | - | chr6.4:48789367-48789386 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 48786085 | 48790313 | 48786085 | ID=MS.gene72612 |
| chr6.4 | mRNA | 48786085 | 48790313 | 48786085 | ID=MS.gene72612.t1;Parent=MS.gene72612 |
| chr6.4 | exon | 48786085 | 48786256 | 48786085 | ID=MS.gene72612.t1.exon1;Parent=MS.gene72612.t1 |
| chr6.4 | CDS | 48786085 | 48786256 | 48786085 | ID=cds.MS.gene72612.t1;Parent=MS.gene72612.t1 |
| chr6.4 | exon | 48788930 | 48789012 | 48788930 | ID=MS.gene72612.t1.exon2;Parent=MS.gene72612.t1 |
| chr6.4 | CDS | 48788930 | 48789012 | 48788930 | ID=cds.MS.gene72612.t1;Parent=MS.gene72612.t1 |
| chr6.4 | exon | 48789900 | 48789955 | 48789900 | ID=MS.gene72612.t1.exon3;Parent=MS.gene72612.t1 |
| chr6.4 | CDS | 48789900 | 48789955 | 48789900 | ID=cds.MS.gene72612.t1;Parent=MS.gene72612.t1 |
| chr6.4 | exon | 48790235 | 48790313 | 48790235 | ID=MS.gene72612.t1.exon4;Parent=MS.gene72612.t1 |
| chr6.4 | CDS | 48790235 | 48790313 | 48790235 | ID=cds.MS.gene72612.t1;Parent=MS.gene72612.t1 |
| Gene Sequence |
| Protein sequence |
