Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72635.t1 | XP_013457621.1 | 98.3 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.00E+00 | 1509.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72635.t1 | Q940Y1 | 68.1 | 772 | 186 | 12 | 1 | 765 | 1 | 719 | 4.3e-298 | 1025.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72635.t1 | A0A072UPM8 | 98.3 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.0e+00 | 1509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72635 | MS.gene070503 | PPI |
| MS.gene016742 | MS.gene72635 | PPI |
| MS.gene070510 | MS.gene72635 | PPI |
| MS.gene81622 | MS.gene72635 | PPI |
| MS.gene72635 | MS.gene016758 | PPI |
| MS.gene070509 | MS.gene72635 | PPI |
| MS.gene72635 | MS.gene070511 | PPI |
| MS.gene72635 | MS.gene057884 | PPI |
| MS.gene72635 | MS.gene057883 | PPI |
| MS.gene72635 | MS.gene070492 | PPI |
| MS.gene81620 | MS.gene72635 | PPI |
| MS.gene070505 | MS.gene72635 | PPI |
| MS.gene057886 | MS.gene72635 | PPI |
| MS.gene070507 | MS.gene72635 | PPI |
| MS.gene72635 | MS.gene67840 | PPI |
| MS.gene81615 | MS.gene72635 | PPI |
| MS.gene37911 | MS.gene72635 | PPI |
| MS.gene72635 | MS.gene81617 | PPI |
| MS.gene016743 | MS.gene72635 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72635.t1 | MTR_4g101410 | 98.312 | 770 | 13 | 0 | 1 | 770 | 1 | 770 | 0.0 | 1579 |
| MS.gene72635.t1 | MTR_4g101410 | 98.516 | 539 | 8 | 0 | 232 | 770 | 1 | 539 | 0.0 | 1119 |
| MS.gene72635.t1 | MTR_3g073040 | 54.419 | 792 | 303 | 12 | 6 | 759 | 1 | 772 | 0.0 | 841 |
| MS.gene72635.t1 | MTR_3g073040 | 54.293 | 792 | 303 | 13 | 6 | 759 | 1 | 771 | 0.0 | 835 |
| MS.gene72635.t1 | MTR_5g459350 | 57.462 | 717 | 284 | 10 | 55 | 765 | 52 | 753 | 0.0 | 793 |
| MS.gene72635.t1 | MTR_3g086340 | 54.698 | 713 | 306 | 9 | 58 | 758 | 95 | 802 | 0.0 | 778 |
| MS.gene72635.t1 | MTR_3g097270 | 54.357 | 723 | 282 | 12 | 55 | 766 | 73 | 758 | 0.0 | 774 |
| MS.gene72635.t1 | MTR_3g073040 | 51.501 | 633 | 250 | 11 | 6 | 601 | 1 | 613 | 0.0 | 620 |
| MS.gene72635.t1 | MTR_3g086340 | 53.176 | 551 | 245 | 5 | 58 | 598 | 95 | 642 | 0.0 | 582 |
| MS.gene72635.t1 | MTR_4g064110 | 32.626 | 377 | 229 | 12 | 393 | 754 | 71 | 437 | 3.30e-45 | 169 |
| MS.gene72635.t1 | MTR_7g061830 | 33.245 | 376 | 228 | 11 | 391 | 752 | 73 | 439 | 1.11e-43 | 164 |
| MS.gene72635.t1 | MTR_4g115490 | 54.000 | 100 | 21 | 4 | 379 | 476 | 74 | 150 | 1.13e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72635.t1 | AT4G22540 | 68.912 | 772 | 180 | 12 | 1 | 765 | 1 | 719 | 0.0 | 1078 |
| MS.gene72635.t1 | AT4G22540 | 68.912 | 772 | 180 | 12 | 1 | 765 | 1 | 719 | 0.0 | 1078 |
| MS.gene72635.t1 | AT4G12460 | 66.532 | 741 | 190 | 9 | 31 | 765 | 3 | 691 | 0.0 | 1011 |
| MS.gene72635.t1 | AT4G12460 | 66.532 | 741 | 190 | 9 | 31 | 765 | 3 | 691 | 0.0 | 1011 |
| MS.gene72635.t1 | AT4G12460 | 66.442 | 742 | 190 | 10 | 31 | 765 | 3 | 692 | 0.0 | 1008 |
| MS.gene72635.t1 | AT4G12460 | 65.331 | 649 | 167 | 9 | 31 | 673 | 3 | 599 | 0.0 | 858 |
| MS.gene72635.t1 | AT4G12460 | 65.231 | 650 | 167 | 10 | 31 | 673 | 3 | 600 | 0.0 | 853 |
| MS.gene72635.t1 | AT4G08180 | 58.815 | 709 | 280 | 6 | 55 | 759 | 106 | 806 | 0.0 | 843 |
| MS.gene72635.t1 | AT4G08180 | 58.815 | 709 | 280 | 6 | 55 | 759 | 106 | 806 | 0.0 | 843 |
| MS.gene72635.t1 | AT4G08180 | 58.815 | 709 | 279 | 7 | 55 | 759 | 106 | 805 | 0.0 | 838 |
| MS.gene72635.t1 | AT4G08180 | 58.533 | 709 | 281 | 7 | 55 | 759 | 106 | 805 | 0.0 | 833 |
| MS.gene72635.t1 | AT2G31020 | 52.651 | 811 | 297 | 14 | 6 | 763 | 1 | 777 | 0.0 | 810 |
| MS.gene72635.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene72635.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene72635.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene72635.t1 | AT4G22540 | 70.513 | 546 | 121 | 5 | 221 | 765 | 2 | 508 | 0.0 | 809 |
| MS.gene72635.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene72635.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene72635.t1 | AT4G12460 | 68.440 | 545 | 129 | 4 | 221 | 765 | 2 | 503 | 0.0 | 788 |
| MS.gene72635.t1 | AT1G13170 | 54.420 | 724 | 308 | 9 | 50 | 761 | 90 | 803 | 0.0 | 788 |
| MS.gene72635.t1 | AT1G13170 | 52.886 | 745 | 308 | 10 | 50 | 761 | 90 | 824 | 0.0 | 774 |
| MS.gene72635.t1 | AT4G12460 | 78.706 | 371 | 71 | 2 | 395 | 765 | 1 | 363 | 0.0 | 640 |
| MS.gene72635.t1 | AT2G31030 | 68.613 | 411 | 123 | 1 | 350 | 760 | 85 | 489 | 0.0 | 610 |
| MS.gene72635.t1 | AT3G09300 | 34.232 | 371 | 217 | 13 | 393 | 747 | 75 | 434 | 1.28e-47 | 176 |
| MS.gene72635.t1 | AT5G02100 | 33.065 | 372 | 220 | 12 | 393 | 747 | 43 | 402 | 2.68e-46 | 171 |
| MS.gene72635.t1 | AT5G02100 | 33.065 | 372 | 220 | 12 | 393 | 747 | 70 | 429 | 3.58e-46 | 171 |
| MS.gene72635.t1 | AT5G59420 | 32.880 | 368 | 224 | 11 | 391 | 744 | 68 | 426 | 2.45e-43 | 163 |
| MS.gene72635.t1 | AT1G77730 | 35.242 | 227 | 136 | 4 | 48 | 272 | 47 | 264 | 5.94e-41 | 151 |
| MS.gene72635.t1 | AT5G02100 | 33.333 | 243 | 154 | 6 | 393 | 632 | 70 | 307 | 6.84e-32 | 127 |
Find 202 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTGCCTTTGCTGTTTC+TGG | 0.052254 | 8.4:+23184509 | MS.gene72635:CDS |
| AAAATCCATTCTTTGTTAAT+TGG | 0.181482 | 8.4:-23182403 | None:intergenic |
| TGAAATTCACCAAATATATC+TGG | 0.207215 | 8.4:-23188166 | None:intergenic |
| TTCCCCTAACAAGGGATTAA+AGG | 0.210036 | 8.4:-23184564 | None:intergenic |
| TTCGATATACTGGTGGATAT+TGG | 0.234820 | 8.4:+23188110 | MS.gene72635:CDS |
| CTGACGGCGAAGAGCGTTTC+CGG | 0.254872 | 8.4:-23179134 | None:intergenic |
| AAGGTAGAGGATGGAGGTTT+TGG | 0.259692 | 8.4:+23185374 | MS.gene72635:CDS |
| GTAACATTCATTCAAAGTTT+TGG | 0.260982 | 8.4:+23185404 | MS.gene72635:CDS |
| AAGCCCTTTAATCCCTTGTT+AGG | 0.261850 | 8.4:+23184560 | MS.gene72635:CDS |
| TTTGACGAAGTGTAATCTTT+AGG | 0.279881 | 8.4:-23186807 | None:intergenic |
| AGCATATGAGCATGGGAAAA+AGG | 0.309220 | 8.4:+23183830 | MS.gene72635:CDS |
| GGAATTTGAGAAGGCAAATA+TGG | 0.309519 | 8.4:+23187146 | MS.gene72635:CDS |
| CTTTACAAATGGACTAATTA+CGG | 0.310331 | 8.4:+23178953 | MS.gene72635:CDS |
| AGCTTCCACCCACGGATTCC+AGG | 0.322458 | 8.4:+23187091 | MS.gene72635:CDS |
| ACAATGATGTATGATGATTA+TGG | 0.323008 | 8.4:+23183612 | MS.gene72635:CDS |
| GGATCAGAAGCCACGGTTGC+CGG | 0.323208 | 8.4:+23178926 | MS.gene72635:CDS |
| TTGTGATCATCATGGGAATA+TGG | 0.330778 | 8.4:+23185639 | MS.gene72635:CDS |
| TCCGGCGTCTCTATCCATTC+TGG | 0.334542 | 8.4:-23179116 | None:intergenic |
| AGGAGAAGGGCGTTAGTCTT+TGG | 0.335192 | 8.4:+23183682 | MS.gene72635:CDS |
| CTCCTACCTGGCGAGGATTT+CGG | 0.339067 | 8.4:-23185723 | None:intergenic |
| TCGATATACTGGTGGATATT+GGG | 0.340088 | 8.4:+23188111 | MS.gene72635:CDS |
| CATTTCTGAAGGGATGATAT+TGG | 0.340358 | 8.4:-23183771 | None:intergenic |
| TCAAGGAAAATGCAAGAAAA+TGG | 0.353504 | 8.4:+23188043 | MS.gene72635:CDS |
| TCCCCTAACAAGGGATTAAA+GGG | 0.357578 | 8.4:-23184563 | None:intergenic |
| CTGGTTTGTTTGATACCATT+AGG | 0.365540 | 8.4:+23180979 | MS.gene72635:CDS |
| ATCGACGACGTACGCTTAAT+CGG | 0.368584 | 8.4:+23179070 | MS.gene72635:CDS |
| TTTGGAGTACTCCTATCTTC+TGG | 0.377023 | 8.4:+23183803 | MS.gene72635:CDS |
| GATAGATGATGACAGTTTAG+TGG | 0.378128 | 8.4:-23180798 | None:intergenic |
| TGATACCATTAGGCAATTAG+AGG | 0.378401 | 8.4:+23180989 | MS.gene72635:CDS |
| TTCAGGGAAACAGTCTCCTT+CGG | 0.379577 | 8.4:+23184477 | MS.gene72635:intron |
| AATATAATTTGCCAAGGATA+AGG | 0.381936 | 8.4:-23185618 | None:intergenic |
| ATTGGCTCATTAAAGTATAC+TGG | 0.382729 | 8.4:-23183753 | None:intergenic |
| GATGGATGCCCAGATATATT+TGG | 0.388595 | 8.4:+23188157 | MS.gene72635:CDS |
| TTCGAGGGCGAGGAGTTTAC+CGG | 0.392882 | 8.4:+23178871 | MS.gene72635:CDS |
| TTCTCTAAGTGCCGTTGATC+AGG | 0.393417 | 8.4:-23187120 | None:intergenic |
| TCAGGGAAACAGTCTCCTTC+GGG | 0.396439 | 8.4:+23184478 | MS.gene72635:intron |
| TCCTTCAGTTGTTCATCTAA+AGG | 0.398048 | 8.4:+23179186 | MS.gene72635:CDS |
| TTCATTTGAGAACTGATTCA+AGG | 0.398225 | 8.4:+23180724 | MS.gene72635:CDS |
| ACTTGAGCCTGCAGGAATAC+TGG | 0.404656 | 8.4:-23185678 | None:intergenic |
| AATGGAACGTTTCGATATAC+TGG | 0.407910 | 8.4:+23188100 | MS.gene72635:CDS |
| ATTCTCCGGTGAACGGATCT+TGG | 0.409105 | 8.4:-23179029 | None:intergenic |
| TTTCGCAAAGAAGGTGAAAA+TGG | 0.411519 | 8.4:+23188082 | MS.gene72635:CDS |
| ATGGAACATTGTTGTGGAAA+AGG | 0.414030 | 8.4:+23186829 | MS.gene72635:CDS |
| TTGCCGGAGTTCTTTACAAA+TGG | 0.416794 | 8.4:+23178942 | MS.gene72635:CDS |
| AAAGATTACACTTCGTCAAA+TGG | 0.418594 | 8.4:+23186810 | MS.gene72635:CDS |
| CCTCATTATACCTTTAGTCC+TGG | 0.419213 | 8.4:-23186921 | None:intergenic |
| CTCTTTGAACTTGAGCCTGC+AGG | 0.419501 | 8.4:-23185686 | None:intergenic |
| AGTTGATACAGATATATGAT+AGG | 0.421055 | 8.4:-23180829 | None:intergenic |
| TTCTCCTTCTCAACAGGATC+CGG | 0.423276 | 8.4:-23183666 | None:intergenic |
| AAATTGTACCGAGTCAGATT+TGG | 0.423649 | 8.4:-23186864 | None:intergenic |
| CGCGAATCGTCTCGCCAGAA+TGG | 0.431637 | 8.4:+23179102 | MS.gene72635:CDS |
| CCAATGAGATGCAGCACAAC+GGG | 0.432925 | 8.4:-23178799 | None:intergenic |
| TCTAGGGTCAGAACTCCAAC+TGG | 0.434657 | 8.4:-23185448 | None:intergenic |
| CTTTCTTCTAATTAGGTGAC+TGG | 0.437943 | 8.4:+23186690 | MS.gene72635:intron |
| CTCATTATACCTTTAGTCCT+GGG | 0.439634 | 8.4:-23186920 | None:intergenic |
| TGTTAGTCAAGGCATTGATA+TGG | 0.441535 | 8.4:+23183572 | MS.gene72635:CDS |
| ACGCCCTTCTCCTTCTCAAC+AGG | 0.442450 | 8.4:-23183672 | None:intergenic |
| AATTACCTCTAATTGCCTAA+TGG | 0.446236 | 8.4:-23180994 | None:intergenic |
| ATCAACGGCACTTAGAGAAT+GGG | 0.452974 | 8.4:+23187124 | MS.gene72635:CDS |
| CAATGATGTATGATGATTAT+GGG | 0.458008 | 8.4:+23183613 | MS.gene72635:CDS |
| TTTCACCATCATCAAACTCT+AGG | 0.460599 | 8.4:-23185465 | None:intergenic |
| GGAAAATGCAAGAAAATGGC+TGG | 0.461061 | 8.4:+23188047 | MS.gene72635:CDS |
| AAGCAGATCCCTCGGGTTCA+AGG | 0.463930 | 8.4:-23182364 | None:intergenic |
| TCCTCTACCTTCACAATGGC+AGG | 0.464356 | 8.4:-23185362 | None:intergenic |
| AAGCAAGAGCTGTAGGATCA+TGG | 0.469213 | 8.4:+23188134 | MS.gene72635:CDS |
| ATATGCTCTATCCAGAAGAT+AGG | 0.472527 | 8.4:-23183814 | None:intergenic |
| CATTGATATGGAAAATAGTC+AGG | 0.474331 | 8.4:+23183584 | MS.gene72635:CDS |
| TGTAGCGTGGATACAAGCTT+TGG | 0.474954 | 8.4:+23180755 | MS.gene72635:CDS |
| AAGAAGCGAACTCCTTTGTC+AGG | 0.476918 | 8.4:-23184605 | None:intergenic |
| AGCCCTTTAATCCCTTGTTA+GGG | 0.477745 | 8.4:+23184561 | MS.gene72635:CDS |
| ACAATATATAACCTTATCCT+TGG | 0.478634 | 8.4:+23185607 | MS.gene72635:CDS |
| GATCAACGGCACTTAGAGAA+TGG | 0.479149 | 8.4:+23187123 | MS.gene72635:CDS |
| AAAGTACGCCATTGCGGAGG+AGG | 0.479447 | 8.4:-23179000 | None:intergenic |
| CATTGTTGTGGAAAAGGACT+AGG | 0.483064 | 8.4:+23186835 | MS.gene72635:CDS |
| ATTCTTTGTCAAGAACGATC+TGG | 0.485342 | 8.4:+23180960 | MS.gene72635:CDS |
| AAATTATATTGTGATCATCA+TGG | 0.485557 | 8.4:+23185631 | MS.gene72635:CDS |
| CCCGTTGTGCTGCATCTCAT+TGG | 0.486703 | 8.4:+23178799 | MS.gene72635:CDS |
| GTCGTGCAAAGCAGATCCCT+CGG | 0.495137 | 8.4:-23182372 | None:intergenic |
| CCTAGGTGGTTTCGCAAAGA+AGG | 0.495193 | 8.4:+23188073 | MS.gene72635:CDS |
| TGCATCTCATTGGAGAGTCC+AGG | 0.495599 | 8.4:+23178809 | MS.gene72635:CDS |
| GAGAACAGATTGAGATTCTC+CGG | 0.501584 | 8.4:-23179043 | None:intergenic |
| GGTGAATTACTTCCGATCCC+TGG | 0.503690 | 8.4:-23178827 | None:intergenic |
| GAATACCAATTAACAAAGAA+TGG | 0.504184 | 8.4:+23182398 | MS.gene72635:CDS |
| CATACACGGCTGCACTTTCG+AGG | 0.505626 | 8.4:+23178855 | MS.gene72635:CDS |
| CATTCTGGCGAGACGATTCG+CGG | 0.507691 | 8.4:-23179101 | None:intergenic |
| GGATTTGTTGAAGATACAAT+GGG | 0.510337 | 8.4:+23186711 | MS.gene72635:CDS |
| TGAGCTTACCCCAGGACTAA+AGG | 0.510721 | 8.4:+23186911 | MS.gene72635:CDS |
| AACTCCTTTGTCAGGAAAGT+CGG | 0.512877 | 8.4:-23184597 | None:intergenic |
| TTCGTAAGTTTCCCCTAACA+AGG | 0.521697 | 8.4:-23184573 | None:intergenic |
| ATTGCGGAGGAGGAACCATC+GGG | 0.525539 | 8.4:-23178990 | None:intergenic |
| GAAGGAGAAGAAGATGAAGA+AGG | 0.525636 | 8.4:-23179169 | None:intergenic |
| AAGAAAATGGCTGGGAACCT+AGG | 0.525750 | 8.4:+23188056 | MS.gene72635:CDS |
| TTGTACCGAGTCAGATTTGG+TGG | 0.526468 | 8.4:-23186861 | None:intergenic |
| AATCCTCAAAACATTTCTGA+AGG | 0.528626 | 8.4:-23183782 | None:intergenic |
| AGGTCTCAGCCTGGAATCCG+TGG | 0.532533 | 8.4:-23187100 | None:intergenic |
| GAAATTCACCAAATATATCT+GGG | 0.536305 | 8.4:-23188165 | None:intergenic |
| TAAGAAACGTTTGCTTGAAG+AGG | 0.539228 | 8.4:+23180860 | MS.gene72635:CDS |
| CATTGCGGAGGAGGAACCAT+CGG | 0.540290 | 8.4:-23178991 | None:intergenic |
| CCGTTGATCAGGTCTCAGCC+TGG | 0.541115 | 8.4:-23187109 | None:intergenic |
| AATTATATTGTGATCATCAT+GGG | 0.542313 | 8.4:+23185632 | MS.gene72635:CDS |
| AGCAAGAGCTGTAGGATCAT+GGG | 0.544115 | 8.4:+23188135 | MS.gene72635:CDS |
| TTATTCCAAGATCCGTTCAC+CGG | 0.545707 | 8.4:+23179024 | MS.gene72635:CDS |
| TTAGGGCGTGGAAAATATAG+TGG | 0.546554 | 8.4:+23182431 | MS.gene72635:CDS |
| CGGCTGCACTTTCGAGGGCG+AGG | 0.549758 | 8.4:+23178861 | MS.gene72635:CDS |
| ACCTTTAGATGAACAACTGA+AGG | 0.550447 | 8.4:-23179187 | None:intergenic |
| CGTCAAATGGAACATTGTTG+TGG | 0.552399 | 8.4:+23186823 | MS.gene72635:CDS |
| AGTCCATTTGTAAAGAACTC+CGG | 0.552798 | 8.4:-23178945 | None:intergenic |
| GGACTAATTACGGCAAAGGA+TGG | 0.555562 | 8.4:+23178963 | MS.gene72635:CDS |
| AAGAAACGTTTGCTTGAAGA+GGG | 0.556527 | 8.4:+23180861 | MS.gene72635:CDS |
| TCTTGACCGAAATCCTCGCC+AGG | 0.557364 | 8.4:+23185717 | MS.gene72635:CDS |
| GTTGATACAGATATATGATA+GGG | 0.559476 | 8.4:-23180828 | None:intergenic |
| CTGGATAGAGCATATGAGCA+TGG | 0.561758 | 8.4:+23183822 | MS.gene72635:CDS |
| CAGCCACATTATTTGGCAAG+TGG | 0.563225 | 8.4:+23186742 | MS.gene72635:CDS |
| TACCGAGTCAGATTTGGTGG+TGG | 0.569125 | 8.4:-23186858 | None:intergenic |
| TCGTGCAAAGCAGATCCCTC+GGG | 0.569487 | 8.4:-23182371 | None:intergenic |
| AAAGGAGAAGCTTCCACCCA+CGG | 0.570119 | 8.4:+23187083 | MS.gene72635:intron |
| GACTGCATTGTTCGCCGTGG+AGG | 0.570257 | 8.4:+23178905 | MS.gene72635:CDS |
| GTTGGAAAAGAGACAAAGAA+TGG | 0.571522 | 8.4:+23187179 | MS.gene72635:CDS |
| TTCACCATCATCAAACTCTA+GGG | 0.571647 | 8.4:-23185464 | None:intergenic |
| CGATGGTTCCTCCTCCGCAA+TGG | 0.572855 | 8.4:+23178992 | MS.gene72635:CDS |
| TATTGGGAAGCAAGAGCTGT+AGG | 0.573587 | 8.4:+23188127 | MS.gene72635:CDS |
| AGAGAATGGGGAATTTGAGA+AGG | 0.574961 | 8.4:+23187137 | MS.gene72635:CDS |
| AGCCACATTATTTGGCAAGT+GGG | 0.575209 | 8.4:+23186743 | MS.gene72635:CDS |
| CAATGGCAGGCAACCACAGT+TGG | 0.575286 | 8.4:-23185349 | None:intergenic |
| TCAATTCAACTTGACCCAGT+TGG | 0.576089 | 8.4:+23185433 | MS.gene72635:CDS |
| GCCCTTTAATCCCTTGTTAG+GGG | 0.581179 | 8.4:+23184562 | MS.gene72635:CDS |
| GCATCTCATTGGAGAGTCCA+GGG | 0.581823 | 8.4:+23178810 | MS.gene72635:CDS |
| TGGATTTGTTGAAGATACAA+TGG | 0.582114 | 8.4:+23186710 | MS.gene72635:CDS |
| ACACTGAATGAGCTTACCCC+AGG | 0.584389 | 8.4:+23186903 | MS.gene72635:CDS |
| TGGATAGAGCATATGAGCAT+GGG | 0.584720 | 8.4:+23183823 | MS.gene72635:CDS |
| GCCAGAATGGATAGAGACGC+CGG | 0.586219 | 8.4:+23179115 | MS.gene72635:CDS |
| GCCATTGTGAAGGTAGAGGA+TGG | 0.586276 | 8.4:+23185365 | MS.gene72635:CDS |
| CTGACCCTAGAGTTTGATGA+TGG | 0.588643 | 8.4:+23185460 | MS.gene72635:CDS |
| GTAATCGCCAGTATTCCTGC+AGG | 0.591049 | 8.4:+23185671 | MS.gene72635:CDS |
| GTCAATGATCAAAGACAATG+TGG | 0.591275 | 8.4:+23183704 | MS.gene72635:CDS |
| AAATATGGAGAAACAAAGGT+TGG | 0.591541 | 8.4:+23187161 | MS.gene72635:CDS |
| GGCAGGCAACCACAGTTGGA+TGG | 0.595585 | 8.4:-23185345 | None:intergenic |
| AAATGGACTAATTACGGCAA+AGG | 0.595813 | 8.4:+23178959 | MS.gene72635:CDS |
| AAGGTTTATGACTCTTCTGA+CGG | 0.598402 | 8.4:-23179150 | None:intergenic |
| GCCTGCCATTGTGAAGGTAG+AGG | 0.598638 | 8.4:+23185361 | MS.gene72635:CDS |
| CCTTCTTTGCGAAACCACCT+AGG | 0.602307 | 8.4:-23188073 | None:intergenic |
| GGAACGTTTCGATATACTGG+TGG | 0.603452 | 8.4:+23188103 | MS.gene72635:CDS |
| GCTTCCGGATCCTGTTGAGA+AGG | 0.604677 | 8.4:+23183662 | MS.gene72635:CDS |
| TCATTGGAGAGTCCAGGGAT+CGG | 0.605015 | 8.4:+23178815 | MS.gene72635:CDS |
| AGTGCAGCCGTGTATGACTC+CGG | 0.606485 | 8.4:-23178848 | None:intergenic |
| GGTAAGCTCATTCAGTGTGA+TGG | 0.607115 | 8.4:-23186898 | None:intergenic |
| GATTGAGATTCTCCGGTGAA+CGG | 0.609231 | 8.4:-23179036 | None:intergenic |
| GGTATCCTCAAATAGTAAGA+CGG | 0.610160 | 8.4:+23183634 | MS.gene72635:CDS |
| GAAAATGCAAGAAAATGGCT+GGG | 0.611031 | 8.4:+23188048 | MS.gene72635:CDS |
| GATCACAATATAATTTGCCA+AGG | 0.612712 | 8.4:-23185624 | None:intergenic |
| TGAAATATTTCAGTGGAGCA+AGG | 0.613705 | 8.4:+23185483 | MS.gene72635:CDS |
| ATCCTCAAAACATTTCTGAA+GGG | 0.613815 | 8.4:-23183781 | None:intergenic |
| GCGAGGAGTTTACCGGCGAG+TGG | 0.614782 | 8.4:+23178878 | MS.gene72635:CDS |
| GGATCCTGTTGAGAAGGAGA+AGG | 0.614967 | 8.4:+23183668 | MS.gene72635:CDS |
| AGGGATCGGAAGTAATTCAC+CGG | 0.615080 | 8.4:+23178829 | MS.gene72635:CDS |
| AAGCTTGTATCCACGCTACA+CGG | 0.615200 | 8.4:-23180752 | None:intergenic |
| GCTCATTAAAGTATACTGGA+AGG | 0.617576 | 8.4:-23183749 | None:intergenic |
| TCTGGATATGCATCATCAGA+AGG | 0.618172 | 8.4:+23184527 | MS.gene72635:CDS |
| TCATTATACCTTTAGTCCTG+GGG | 0.620951 | 8.4:-23186919 | None:intergenic |
| GTAAAGAACTCCGGCAACCG+TGG | 0.621812 | 8.4:-23178936 | None:intergenic |
| GATCCTGTTGAGAAGGAGAA+GGG | 0.622608 | 8.4:+23183669 | MS.gene72635:CDS |
| GGCAGCTAACCTTGAACCCG+AGG | 0.623759 | 8.4:+23182355 | MS.gene72635:intron |
| GGCCACCACCAAATCTGACT+CGG | 0.623879 | 8.4:+23186856 | MS.gene72635:CDS |
| TCCAATGAGATGCAGCACAA+CGG | 0.624692 | 8.4:-23178800 | None:intergenic |
| GGTCTCAGCCTGGAATCCGT+GGG | 0.626857 | 8.4:-23187099 | None:intergenic |
| AGGCAAATATGGAGAAACAA+AGG | 0.630247 | 8.4:+23187157 | MS.gene72635:CDS |
| CAAGGAAAGACCGTGTAGCG+TGG | 0.631619 | 8.4:+23180742 | MS.gene72635:CDS |
| CCGTGGAGGATCAGAAGCCA+CGG | 0.633089 | 8.4:+23178919 | MS.gene72635:CDS |
| CTCAGCCTGGAATCCGTGGG+TGG | 0.633274 | 8.4:-23187096 | None:intergenic |
| TAGCAGTGAAAATCTTGTGA+AGG | 0.636958 | 8.4:+23180884 | MS.gene72635:CDS |
| TCTGCGGAAGCTGTTAGTCA+AGG | 0.641099 | 8.4:+23183561 | MS.gene72635:CDS |
| TCGTAAGTTTCCCCTAACAA+GGG | 0.642972 | 8.4:-23184572 | None:intergenic |
| AGGAATACTGGCGATTACCA+CGG | 0.645278 | 8.4:-23185666 | None:intergenic |
| ATGCAGTCAGATCCACTCGC+CGG | 0.646020 | 8.4:-23178890 | None:intergenic |
| GTGGTTGCCTGCCATTGTGA+AGG | 0.649232 | 8.4:+23185355 | MS.gene72635:CDS |
| TAATTCACCGGAGTCATACA+CGG | 0.650053 | 8.4:+23178841 | MS.gene72635:CDS |
| ATGATGGTGAAATATTTCAG+TGG | 0.650358 | 8.4:+23185476 | MS.gene72635:CDS |
| CATGGGAATATGGAAATCCG+TGG | 0.651698 | 8.4:+23185649 | MS.gene72635:CDS |
| GTAGAACCTCCTACCTGGCG+AGG | 0.655780 | 8.4:-23185730 | None:intergenic |
| CTAGGGTCAGAACTCCAACT+GGG | 0.658230 | 8.4:-23185447 | None:intergenic |
| AATAAGAAAGTACGCCATTG+CGG | 0.660257 | 8.4:-23179006 | None:intergenic |
| CCAGGCTGAGACCTGATCAA+CGG | 0.663381 | 8.4:+23187109 | MS.gene72635:CDS |
| TGCATATCCAGAAACAGCAA+AGG | 0.663498 | 8.4:-23184516 | None:intergenic |
| GCAAAGGATGGAGATCCCGA+TGG | 0.666798 | 8.4:+23178975 | MS.gene72635:CDS |
| TCAACGGCACTTAGAGAATG+GGG | 0.669553 | 8.4:+23187125 | MS.gene72635:CDS |
| CAGCAACGTTCAATGCCCGA+AGG | 0.671551 | 8.4:-23184493 | None:intergenic |
| AAAATGGCTGGGAACCTAGG+TGG | 0.671755 | 8.4:+23188059 | MS.gene72635:CDS |
| AAGAAAGTACGCCATTGCGG+AGG | 0.672163 | 8.4:-23179003 | None:intergenic |
| ATCCCACTTGCCAAATAATG+TGG | 0.674658 | 8.4:-23186745 | None:intergenic |
| ATACACGGCTGCACTTTCGA+GGG | 0.677693 | 8.4:+23178856 | MS.gene72635:CDS |
| CCGTGGCTTCTGATCCTCCA+CGG | 0.679159 | 8.4:-23178919 | None:intergenic |
| ATATATCTGTATCAACTGAG+AGG | 0.679661 | 8.4:+23180835 | MS.gene72635:CDS |
| ATTGTGAAGGTAGAGGATGG+AGG | 0.682063 | 8.4:+23185368 | MS.gene72635:CDS |
| AGAGCTGTAGGATCATGGGA+TGG | 0.683308 | 8.4:+23188139 | MS.gene72635:CDS |
| TCTGACTGCATTGTTCGCCG+TGG | 0.685403 | 8.4:+23178902 | MS.gene72635:CDS |
| GCAGCTAACCTTGAACCCGA+GGG | 0.688367 | 8.4:+23182356 | MS.gene72635:CDS |
| TCCATCCTCTACCTTCACAA+TGG | 0.688384 | 8.4:-23185366 | None:intergenic |
| GCTATCAGAATGCAGTACAA+CGG | 0.696464 | 8.4:+23183398 | MS.gene72635:intron |
| TCAATGATCAAAGACAATGT+GGG | 0.707465 | 8.4:+23183705 | MS.gene72635:CDS |
| GAAGCCGACTTTCCTGACAA+AGG | 0.708212 | 8.4:+23184593 | MS.gene72635:CDS |
| GGTTAGTCACCATCCAACTG+TGG | 0.711984 | 8.4:+23185336 | MS.gene72635:intron |
| AAATCGAGTGAACATGTCTG+CGG | 0.724062 | 8.4:+23183545 | MS.gene72635:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23178779 | 23188222 | 23178779 | ID=MS.gene72635 |
| chr8.4 | mRNA | 23178779 | 23188222 | 23178779 | ID=MS.gene72635.t1;Parent=MS.gene72635 |
| chr8.4 | exon | 23178779 | 23179207 | 23178779 | ID=MS.gene72635.t1.exon1;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23178779 | 23179207 | 23178779 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23180657 | 23181010 | 23180657 | ID=MS.gene72635.t1.exon2;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23180657 | 23181010 | 23180657 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23182356 | 23182452 | 23182356 | ID=MS.gene72635.t1.exon3;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23182356 | 23182452 | 23182356 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23183406 | 23183851 | 23183406 | ID=MS.gene72635.t1.exon4;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23183406 | 23183851 | 23183406 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23184482 | 23184637 | 23184482 | ID=MS.gene72635.t1.exon5;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23184482 | 23184637 | 23184482 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23185337 | 23185504 | 23185337 | ID=MS.gene72635.t1.exon6;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23185337 | 23185504 | 23185337 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23185598 | 23185738 | 23185598 | ID=MS.gene72635.t1.exon7;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23185598 | 23185738 | 23185598 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23186705 | 23186932 | 23186705 | ID=MS.gene72635.t1.exon8;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23186705 | 23186932 | 23186705 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23187087 | 23187200 | 23187087 | ID=MS.gene72635.t1.exon9;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23187087 | 23187200 | 23187087 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| chr8.4 | exon | 23188043 | 23188222 | 23188043 | ID=MS.gene72635.t1.exon10;Parent=MS.gene72635.t1 |
| chr8.4 | CDS | 23188043 | 23188222 | 23188043 | ID=cds.MS.gene72635.t1;Parent=MS.gene72635.t1 |
| Gene Sequence |
| Protein sequence |
