AlfalfaGEDB | MS.gene73404

M. sativa cultivar XinJiangDaYe / MS.gene73404

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73404.t1	XP_024629393.1	91.2	579	49	2	1	578	73	650	1.50E-307	1064.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73404.t1	Q9C6K9	47.0	581	251	14	13	571	80	625	3.0e-134	480.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73404.t1	A0A396KAF2	91.2	579	49	2	1	578	73	650	1.1e-307	1064.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene73404	PPI
MS.gene016743	MS.gene73404	PPI
MS.gene016758	MS.gene73404	PPI
MS.gene035805	MS.gene73404	PPI
MS.gene057883	MS.gene73404	PPI
MS.gene057884	MS.gene73404	PPI
MS.gene057886	MS.gene73404	PPI
MS.gene064542	MS.gene73404	PPI
MS.gene070492	MS.gene73404	PPI
MS.gene070503	MS.gene73404	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73404.t1	MTR_1g110130	89.292	579	49	3	1	578	73	639	0.0	1062
MS.gene73404.t1	MTR_1g110120	51.801	583	244	9	12	567	88	660	0.0	561
MS.gene73404.t1	MTR_1g110180	50.255	589	250	13	14	572	100	675	0.0	530
MS.gene73404.t1	MTR_1g110110	50.515	582	241	11	15	572	89	647	1.03e-179	522
MS.gene73404.t1	MTR_5g055310	52.254	488	175	12	75	517	127	601	1.15e-159	470
MS.gene73404.t1	MTR_7g082530	59.409	372	132	2	192	562	325	678	2.17e-151	451
MS.gene73404.t1	MTR_7g082530	59.569	371	131	2	192	561	325	677	3.18e-151	451
MS.gene73404.t1	MTR_6g083020	57.393	399	135	7	137	507	224	615	5.68e-151	449
MS.gene73404.t1	MTR_1g110260	46.360	522	241	14	1	499	1	506	1.43e-141	421
MS.gene73404.t1	MTR_6g044830	51.825	411	166	5	124	502	176	586	3.07e-136	410

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73404.t1	AT1G25390	46.907	582	252	14	13	572	80	626	2.93e-167	490
MS.gene73404.t1	AT1G25390	46.907	582	252	14	13	572	80	626	2.93e-167	490
MS.gene73404.t1	AT1G18390	59.040	354	118	3	211	564	322	648	7.58e-142	425
MS.gene73404.t1	AT1G18390	59.040	354	118	3	211	564	328	654	9.26e-142	425
MS.gene73404.t1	AT1G66880	57.300	363	136	6	207	568	328	672	2.55e-133	404
MS.gene73404.t1	AT5G38210	43.636	550	225	15	39	518	105	639	7.09e-132	400
MS.gene73404.t1	AT5G38210	43.636	550	225	15	39	518	123	657	9.10e-132	401
MS.gene73404.t1	AT5G38210	61.146	314	116	2	205	518	338	645	1.00e-129	395
MS.gene73404.t1	AT1G66880	43.141	554	226	13	85	568	380	914	6.05e-128	397
MS.gene73404.t1	AT1G66880	43.141	554	226	13	85	568	759	1293	2.12e-124	396

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Find 126 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTTGGCGTGGAAGTT+AGG	0.339586	1.4:+84035332	MS.gene73404:CDS
AAAGAAGCTAAAGGAGAAGT+GGG	0.452706	1.4:-84034563	None:intergenic
AAAGAGCTTGGCACTTTGAA+GGG	0.511420	1.4:-84034719	None:intergenic
AACAAGTGTCTTCATCATCA+AGG	0.516197	1.4:+84034851	MS.gene73404:CDS
AACCCCAGGCTATATGGATC+CGG	0.503326	1.4:+84036446	MS.gene73404:CDS
AACTCAAAGGGGTCATCACT+AGG	0.540972	1.4:-84034782	None:intergenic
AAGAAGCTAAAGGAGAAGTG+GGG	0.559650	1.4:-84034562	None:intergenic
AAGAGTGATGTTTACAGCTT+TGG	0.370042	1.4:+84036498	MS.gene73404:CDS
AAGGTAATAGATATCATAAC+CGG	0.471977	1.4:-84034675	None:intergenic
AAGTAAAATCCATGAGCTGG+TGG	0.601099	1.4:+84036623	MS.gene73404:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGTAAAATCCATGAGC+TGG	+	chr1.4:84036620-84036639	MS.gene73404:CDS	30.0%
AACGAAAAAGTCTTAGAAGT+TGG	-	chr1.4:84035065-84035084	None:intergenic	30.0%
ACTGTGATAGGTCTATAAAA+AGG	-	chr1.4:84035534-84035553	None:intergenic	30.0%
AGAAATTTAGTGTCTCTCTA+TGG	+	chr1.4:84036120-84036139	MS.gene73404:CDS	30.0%
AGTCAGATAACGATGTTAAA+AGG	+	chr1.4:84036664-84036683	MS.gene73404:CDS	30.0%
ATCAAAAAGAGTTTACGAGA+GGG	+	chr1.4:84034947-84034966	MS.gene73404:intron	30.0%
ATTAAATAGACCTCAACCAA+AGG	+	chr1.4:84034999-84035018	MS.gene73404:intron	30.0%
ATTCATTCCCATTAAAAAGG+GGG	-	chr1.4:84035455-84035474	None:intergenic	30.0%
ATTTCAAATGGAACTGTTTC+CGG	+	chr1.4:84036189-84036208	MS.gene73404:CDS	30.0%
CAATGCCTAGAAATCAATAA+AGG	-	chr1.4:84035669-84035688	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	84034437	84037016	84034437	ID=MS.gene73404
chr1.4	mRNA	84034437	84037016	84034437	ID=MS.gene73404.t1;Parent=MS.gene73404
chr1.4	exon	84034437	84034920	84034437	ID=MS.gene73404.t1.exon1;Parent=MS.gene73404.t1
chr1.4	CDS	84034437	84034920	84034437	ID=cds.MS.gene73404.t1;Parent=MS.gene73404.t1
chr1.4	exon	84035327	84035359	84035327	ID=MS.gene73404.t1.exon2;Parent=MS.gene73404.t1
chr1.4	CDS	84035327	84035359	84035327	ID=cds.MS.gene73404.t1;Parent=MS.gene73404.t1
chr1.4	exon	84035683	84035895	84035683	ID=MS.gene73404.t1.exon3;Parent=MS.gene73404.t1
chr1.4	CDS	84035683	84035895	84035683	ID=cds.MS.gene73404.t1;Parent=MS.gene73404.t1
chr1.4	exon	84036010	84037016	84036010	ID=MS.gene73404.t1.exon4;Parent=MS.gene73404.t1
chr1.4	CDS	84036010	84037016	84036010	ID=cds.MS.gene73404.t1;Parent=MS.gene73404.t1

Gene Sequence

>MS.gene73404

ATGCCACCCAAACAGTCTTTAATAGTTACATACGTGGAAGGTAATACCATCACGGTCACAGATGAAGCTCATCGGAAGAATTTGCTATCCAAAAATTGTCAAGCCATTCACAATTTTCCTGTTCCCCCCACTTCTCCTTTAGCTTCTTTCTACATCAAATTTAATATAACCATGTTCAAATGCAATCGCTCCCTTAGGGTCACCCTTCCAAAATCATTTCAAAAGTACACAAACTGTTCCGGTTATGATATCTATTACCTTCAAAATACTACGATACCTCCTCCCTTCAAAGTGCCAAGCTCTTTGGCACAGTGTACACAGTGTGACGTTGCAATTAGAGACAGTCCTAGTGATGACCCCTTTGAGTTTCTATCTCCTCAGATCGTCATTGTAGTACAATTATCTGATGATTGTAACAAGTGTCTTCATCATCAAGGGGGACGATGCCAACTTGATATTCAAGGAAAATTTCACTGTGCCAAAGGTATGCTTTCACAATACATGCGCATCATCAAAAAGAGTTTACGAGAGGGGAGGTTGTCCGTTGTCCTGAGTGAAGGGCATTAAATAGACCTCAACCAAAGGTTACACAACAAAGATCGTTAAAAAAAGGTTACCAGAAAATCCAACTTCTAAGACTTTTTCGTTGGACGCATACTAAAATTTTGGCACCCAACAGTGTTCAATCCTAAGTATCAGTTACTAGACTGTATAATATACAGTAGAATAGAAATTTGAAATATCCATCCTTGTATAGTAATTTAAGGAAATGGGTCCCCTTCAGCTGCTGCACCGTGCAGCTGCTGTCGGGGTCAAATCCATAATTTAGTCTAAGTCTTCACTTTATTGCTTGTTTTCAATTTAATCAGTACCTTTGATTTCTGCTGCAGGGGATAAAAGTTTGGCGTGGAAGTTAGGACTTGGTAATGTTTGTTCCTCTAACATAGAATTTTCTTGAATTTCGAATGTCTATATTTAAAGATTATGAGCATCATACACATATGTTCCATGTACTCCCCCTTTTTAATGGGAATGAATATTTTTATATAGGAATTTTAGATCGCACGATATATTTTTGCCTATATGTTTATTTCCCTTTTTATAGACCTATCACAGTTTGGACAGTGGAGGATATAATAGTCAAGCAATCACAGTCTATCAGAGAGTATTTCAAATTCCCTTTGCATGCTCTTCAAGTTAATATTCAATAAATTATTGAATTTTTCTCACCTTTATTGATTTCTAGGCATTGGACTTCTTGTCATTATTATAACCGGGTTGCTGATTATATGGCGCTGCAAACGACGTGTTCCTGATTTCTACTCAAATAAATATACAGAGAGTAACAGTTTCTACCATGGGGTGCCGGTCTTTTCCTTCAAGGATCTTGAAGTAGCAACAAAAAAATTTGACAGTTCAAGAGAACTTGGAGAAGGAGGATTTGGCACTGTTTATTACGGTATGTGTAGCACTCACACAAACTCTATTATCTATGAAAAGGCGGTAGGTTTAATTAGAACTTCCCTGTAGTTATAAGTAAATAATAACTCTTGCTTTCATCTTTAACAACCAGGAAAACTCAAAGATGGACGTGAAGTTGCTGTGAAGCGCTTATTTCAGCACAACTTTAAACGAGTTGAACAGTTCATGAATGAAATCAAAATCCTCACTCGATTGCGCCACAGAAATTTAGTGTCTCTCTATGGCTGTACTTCACATCATAGTCATGAACTATTGCTTGTATATGAATACATTTCAAATGGAACTGTTTCCGGTCATCTGCGTTGTGAATCAACGAATCCTGGCTTTCTTCCGTGGCATATTCGAATGAAAGTTGCCTTAGAGACTGCTACTGCTTTGGCTTATCTCCATGCTTCTGAAATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTTGACAACACCTTTTGCATTAAAGTTGCAGACTTTGGACTGTCAAAACTGTTCCCAAATGATGTCACACACGTCTCCACAGCTCCACAAGGAACCCCAGGCTATATGGATCCGGAATATCATCAATGCTACAGGCTTACAAGCAAGAGTGATGTTTACAGCTTTGGAGTTGTACTTGTTGAGCTGATATCGTCTATGCCAGCAGTTGATATGAGCAGAGATAAGGATGAGATAAATTTGGCAAATTTAGCCGTACGGAAGATTCAAAAAAGTAAAATCCATGAGCTGGTGGATCCATCCCTTGGCTTTGAGTCAGATAACGATGTTAAAAGGAAAATAGTTGCAATAGCAGAGTTGGCTTTTCAGTGTTTGCAACTGGATAAGGAATTGAGGCCCTCAATGGAGGAGGTTTTGGACGTGCTGAGGAGAATTGATAGTGGGAGCAGGAGGGATGAGTTTGGACATGCAGAGGAAGTAATAGCTCGTGGAGCAGTGATGTCGAGTATCAATGTACGTTCAATGTCATTGTCTTCACCCGATCACGTTGAGATGAAACTGTTGAAGAATAACAAGTTAACACCTTCTCCTAAGTCCGTGACAGATAAATGGGACAGTGAATCGACTACTTCTAATGTCAGTGGTCAATCAGCGAGCCGAATGTAA

Protein sequence

>MS.gene73404.t1

MPPKQSLIVTYVEGNTITVTDEAHRKNLLSKNCQAIHNFPVPPTSPLASFYIKFNITMFKCNRSLRVTLPKSFQKYTNCSGYDIYYLQNTTIPPPFKVPSSLAQCTQCDVAIRDSPSDDPFEFLSPQIVIVVQLSDDCNKCLHHQGGRCQLDIQGKFHCAKGDKSLAWKLGLGIGLLVIIITGLLIIWRCKRRVPDFYSNKYTESNSFYHGVPVFSFKDLEVATKKFDSSRELGEGGFGTVYYGKLKDGREVAVKRLFQHNFKRVEQFMNEIKILTRLRHRNLVSLYGCTSHHSHELLLVYEYISNGTVSGHLRCESTNPGFLPWHIRMKVALETATALAYLHASEIIHRDVKTNNILLDNTFCIKVADFGLSKLFPNDVTHVSTAPQGTPGYMDPEYHQCYRLTSKSDVYSFGVVLVELISSMPAVDMSRDKDEINLANLAVRKIQKSKIHELVDPSLGFESDNDVKRKIVAIAELAFQCLQLDKELRPSMEEVLDVLRRIDSGSRRDEFGHAEEVIARGAVMSSINVRSMSLSSPDHVEMKLLKNNKLTPSPKSVTDKWDSESTTSNVSGQSASRM