Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73993.t1 | XP_003605789.2 | 96.8 | 370 | 12 | 0 | 1 | 370 | 1 | 370 | 2.10E-209 | 738 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73993.t1 | A0A396I5A5 | 96.8 | 370 | 12 | 0 | 1 | 370 | 1 | 370 | 1.5e-209 | 738.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene73993 | 0.812304 | 4.54E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene73993 | 0.81802 | 2.44E-52 | -1.69E-46 |
| MS.gene050710 | MS.gene73993 | 0.821098 | 4.84E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene73993 | 0.816127 | 6.49E-52 | -1.69E-46 |
| MS.gene051158 | MS.gene73993 | 0.835192 | 1.94E-56 | -1.69E-46 |
| MS.gene051552 | MS.gene73993 | 0.812855 | 3.44E-51 | -1.69E-46 |
| MS.gene051996 | MS.gene73993 | 0.827524 | 1.49E-54 | -1.69E-46 |
| MS.gene052223 | MS.gene73993 | 0.857294 | 1.80E-62 | -1.69E-46 |
| MS.gene05240 | MS.gene73993 | 0.810566 | 1.08E-50 | -1.69E-46 |
| MS.gene052706 | MS.gene73993 | 0.801983 | 6.96E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene73993 | 0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene054277 | MS.gene73993 | 0.810873 | 9.28E-51 | -1.69E-46 |
| MS.gene054742 | MS.gene73993 | 0.870225 | 1.71E-66 | -1.69E-46 |
| MS.gene056330 | MS.gene73993 | 0.866472 | 2.78E-65 | -1.69E-46 |
| MS.gene056590 | MS.gene73993 | 0.80795 | 3.93E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene73993 | 0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene056680 | MS.gene73993 | 0.823205 | 1.57E-53 | -1.69E-46 |
| MS.gene056688 | MS.gene73993 | 0.826223 | 3.05E-54 | -1.69E-46 |
| MS.gene056690 | MS.gene73993 | 0.819994 | 8.67E-53 | -1.69E-46 |
| MS.gene056691 | MS.gene73993 | 0.804995 | 1.65E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene73993 | 0.832274 | 1.04E-55 | -1.69E-46 |
| MS.gene056923 | MS.gene73993 | 0.807237 | 5.58E-50 | -1.69E-46 |
| MS.gene056924 | MS.gene73993 | 0.804025 | 2.63E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene73993 | 0.818999 | 1.46E-52 | -1.69E-46 |
| MS.gene058158 | MS.gene73993 | 0.809495 | 1.84E-50 | -1.69E-46 |
| MS.gene059328 | MS.gene73993 | 0.806443 | 8.21E-50 | -1.69E-46 |
| MS.gene059892 | MS.gene73993 | 0.818082 | 2.36E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene73993 | 0.839298 | 1.72E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60267 | MS.gene73993 | PPI |
| MS.gene73993 | MS.gene015971 | PPI |
| MS.gene51556 | MS.gene73993 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73993.t1 | MTR_4g039680 | 96.730 | 367 | 12 | 0 | 4 | 370 | 1 | 367 | 0.0 | 734 |
| MS.gene73993.t1 | MTR_4g039740 | 87.193 | 367 | 47 | 0 | 4 | 370 | 1 | 367 | 0.0 | 677 |
| MS.gene73993.t1 | MTR_4g039720 | 86.523 | 371 | 49 | 1 | 1 | 370 | 1 | 371 | 0.0 | 673 |
| MS.gene73993.t1 | MTR_0045s0110 | 81.199 | 367 | 69 | 0 | 4 | 370 | 1 | 367 | 0.0 | 615 |
| MS.gene73993.t1 | MTR_1g011800 | 54.545 | 330 | 148 | 2 | 37 | 364 | 39 | 368 | 4.85e-131 | 380 |
| MS.gene73993.t1 | MTR_2g103170 | 47.904 | 334 | 168 | 2 | 37 | 364 | 28 | 361 | 1.73e-111 | 330 |
| MS.gene73993.t1 | MTR_2g019600 | 43.161 | 329 | 186 | 1 | 37 | 364 | 35 | 363 | 2.74e-96 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73993.t1 | AT3G08030 | 67.941 | 340 | 108 | 1 | 32 | 370 | 26 | 365 | 1.23e-175 | 493 |
| MS.gene73993.t1 | AT3G08030 | 68.731 | 323 | 100 | 1 | 49 | 370 | 1 | 323 | 4.45e-169 | 474 |
| MS.gene73993.t1 | AT2G41810 | 58.101 | 358 | 143 | 3 | 14 | 364 | 7 | 364 | 2.55e-150 | 429 |
| MS.gene73993.t1 | AT2G41800 | 60.241 | 332 | 131 | 1 | 37 | 367 | 36 | 367 | 3.10e-150 | 429 |
| MS.gene73993.t1 | AT5G11420 | 55.623 | 329 | 145 | 1 | 37 | 364 | 30 | 358 | 2.74e-135 | 390 |
| MS.gene73993.t1 | AT5G25460 | 52.210 | 362 | 171 | 2 | 4 | 364 | 1 | 361 | 8.66e-135 | 389 |
| MS.gene73993.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 37 | 364 | 29 | 357 | 1.23e-131 | 381 |
| MS.gene73993.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 37 | 364 | 29 | 357 | 1.23e-131 | 381 |
| MS.gene73993.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 49 | 364 | 1 | 317 | 1.43e-129 | 374 |
| MS.gene73993.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 49 | 364 | 1 | 317 | 1.43e-129 | 374 |
| MS.gene73993.t1 | AT1G80240 | 50.152 | 329 | 163 | 1 | 37 | 364 | 32 | 360 | 4.23e-114 | 337 |
| MS.gene73993.t1 | AT1G29980 | 42.308 | 338 | 185 | 2 | 37 | 364 | 7 | 344 | 1.74e-96 | 292 |
| MS.gene73993.t1 | AT1G29980 | 42.308 | 338 | 185 | 2 | 37 | 364 | 43 | 380 | 5.90e-96 | 292 |
| MS.gene73993.t1 | AT2G34510 | 42.515 | 334 | 186 | 2 | 37 | 364 | 43 | 376 | 4.29e-94 | 287 |
| MS.gene73993.t1 | AT2G34510 | 43.793 | 290 | 157 | 2 | 81 | 364 | 1 | 290 | 3.69e-84 | 258 |
| MS.gene73993.t1 | AT5G14150 | 27.733 | 375 | 232 | 12 | 14 | 370 | 8 | 361 | 6.33e-31 | 121 |
| MS.gene73993.t1 | AT5G14150 | 27.733 | 375 | 232 | 12 | 14 | 370 | 8 | 361 | 6.33e-31 | 121 |
Find 102 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGTTGTGTTGAAAAT+AGG | 0.118027 | 4.1:+59376256 | None:intergenic |
| CTTTGAATCAATAAATTTAA+TGG | 0.130784 | 4.1:+59376162 | None:intergenic |
| GCCTATATTTGCAGATAATT+TGG | 0.140639 | 4.1:-59376311 | MS.gene73993:intron |
| CTTAAAGTTTACTTCCAAAA+TGG | 0.175065 | 4.1:-59377780 | MS.gene73993:intron |
| CTTGTTTCCTTTATGAATCT+TGG | 0.194424 | 4.1:+59377735 | None:intergenic |
| TCCTACTTGTGGTCCACTTT+TGG | 0.248583 | 4.1:-59377346 | MS.gene73993:CDS |
| TCTCTTCAAAGTTCCCATTT+TGG | 0.257255 | 4.1:+59377766 | None:intergenic |
| TTCATATTGTAGACTTTGTT+TGG | 0.283032 | 4.1:+59376055 | None:intergenic |
| CATTTGTTGTGTTGAAAATA+GGG | 0.295242 | 4.1:+59376257 | None:intergenic |
| CATACAAGGATTGATGATAT+TGG | 0.295621 | 4.1:-59375851 | MS.gene73993:CDS |
| TCCTTTATGAATCTTGGGTT+TGG | 0.305420 | 4.1:+59377741 | None:intergenic |
| CAATGGTATGCTCTAATATT+AGG | 0.315217 | 4.1:-59377543 | MS.gene73993:CDS |
| CAGGTTTGACCTTGATGGTT+TGG | 0.315262 | 4.1:+59377568 | None:intergenic |
| AAAGTTCCTTTCAAATCTTT+AGG | 0.319577 | 4.1:-59375956 | MS.gene73993:CDS |
| TAGACCATTGATTTCCCATT+TGG | 0.321175 | 4.1:+59377689 | None:intergenic |
| AATAAATTTAATGGCTTTGA+GGG | 0.322824 | 4.1:+59376171 | None:intergenic |
| CTTCTTGCATACCAGGGTTA+TGG | 0.328613 | 4.1:+59377370 | None:intergenic |
| TTGTTTCCTTTATGAATCTT+GGG | 0.332661 | 4.1:+59377736 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4.1:-59377430 | MS.gene73993:CDS |
| AAGAATTTCCAAGTGCCATT+TGG | 0.355884 | 4.1:-59376142 | MS.gene73993:CDS |
| AGGTTTGACCTTGATGGTTT+GGG | 0.356574 | 4.1:+59377569 | None:intergenic |
| TTGACCAGGTTTGACCTTGA+TGG | 0.371778 | 4.1:+59377563 | None:intergenic |
| GACACAAGATCTTGTTGCTT+TGG | 0.386124 | 4.1:+59376220 | None:intergenic |
| GAAAACATTCACTTCCCAAA+TGG | 0.392506 | 4.1:-59377704 | MS.gene73993:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.392515 | 4.1:-59376115 | MS.gene73993:CDS |
| TTGTGTCACCACTCCCTGGC+TGG | 0.399232 | 4.1:-59376204 | MS.gene73993:CDS |
| TTAAAGTTTACTTCCAAAAT+GGG | 0.399296 | 4.1:-59377779 | MS.gene73993:intron |
| CAATAAATTTAATGGCTTTG+AGG | 0.405241 | 4.1:+59376170 | None:intergenic |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4.1:-59377447 | MS.gene73993:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.1:-59377421 | MS.gene73993:CDS |
| AACATTACCTTCTGGTGACC+TGG | 0.416189 | 4.1:+59378344 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.1:-59377483 | MS.gene73993:CDS |
| GCCAAACCCAAGATTCATAA+AGG | 0.423787 | 4.1:-59377742 | MS.gene73993:CDS |
| TACAATATGAAATTCACAAT+TGG | 0.427534 | 4.1:-59376043 | MS.gene73993:CDS |
| GACCTTGATGGTTTGGGAGA+TGG | 0.428706 | 4.1:+59377575 | None:intergenic |
| ATAAAGGAAACAAGACTCAT+TGG | 0.440193 | 4.1:-59377726 | MS.gene73993:CDS |
| AGACCATTGATTTCCCATTT+GGG | 0.443676 | 4.1:+59377690 | None:intergenic |
| TTCCAAGTGCCATTTGGAAA+AGG | 0.444677 | 4.1:-59376136 | MS.gene73993:CDS |
| AAAACATTCACTTCCCAAAT+GGG | 0.451562 | 4.1:-59377703 | MS.gene73993:CDS |
| CATTGTTCATTACCTCTTGT+CGG | 0.452200 | 4.1:+59377288 | None:intergenic |
| ACAAGATCTTGTTGCTTTGG+AGG | 0.453040 | 4.1:+59376223 | None:intergenic |
| AAGAACATGCCTCCAGGTTG+TGG | 0.457371 | 4.1:+59377645 | None:intergenic |
| CCTTTCAAATCTTTAGGAAA+GGG | 0.458801 | 4.1:-59375950 | MS.gene73993:CDS |
| GTAGGATCTTCTTGCATACC+AGG | 0.469875 | 4.1:+59377363 | None:intergenic |
| AGAAGGAGAGTCTAAGCAAC+AGG | 0.470064 | 4.1:+59375788 | None:intergenic |
| TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4.1:+59377297 | None:intergenic |
| ATCTCTGGAGGTCCACAACC+TGG | 0.483993 | 4.1:-59377657 | MS.gene73993:CDS |
| TCATTACCTCTTGTCGGCAT+CGG | 0.487489 | 4.1:+59377294 | None:intergenic |
| GCATGAACTCCATGTGACAC+TGG | 0.490852 | 4.1:+59377621 | None:intergenic |
| GGTCTAGTAGAATATATCTC+TGG | 0.497686 | 4.1:-59377672 | MS.gene73993:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.502014 | 4.1:-59376037 | MS.gene73993:CDS |
| AATGGACCCTCTTCAAAGCC+AGG | 0.508731 | 4.1:+59376280 | None:intergenic |
| TCCTTTCAAATCTTTAGGAA+AGG | 0.509600 | 4.1:-59375951 | MS.gene73993:CDS |
| AGTGGAGCTTGTTGCAGGTA+GGG | 0.513407 | 4.1:-59376110 | MS.gene73993:CDS |
| AAGAAACCCTGGCTTTGAAG+AGG | 0.516304 | 4.1:-59376287 | MS.gene73993:CDS |
| CAAACCATCAAGGTCAAACC+TGG | 0.519771 | 4.1:-59377567 | MS.gene73993:CDS |
| TCAATAATCCAGCCAGGGAG+TGG | 0.521095 | 4.1:+59376196 | None:intergenic |
| AGGGATTCAATAATCCAGCC+AGG | 0.524844 | 4.1:+59376190 | None:intergenic |
| ATAGCTCTTTCTATCATACA+AGG | 0.527718 | 4.1:-59375865 | MS.gene73993:CDS |
| GATAATTTGGTAAGAAACCC+TGG | 0.527834 | 4.1:-59376298 | MS.gene73993:CDS |
| GGAGTTCATGCAGTTAGACT+TGG | 0.527950 | 4.1:-59377609 | MS.gene73993:CDS |
| TCAAGGTCAAACCTGGTCAA+TGG | 0.528995 | 4.1:-59377560 | MS.gene73993:CDS |
| CCCTTTCCTAAAGATTTGAA+AGG | 0.532370 | 4.1:+59375950 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4.1:-59377429 | MS.gene73993:CDS |
| GCTATAACTTGATCAAGGAC+AGG | 0.534900 | 4.1:+59375815 | None:intergenic |
| CTTCCCAAATGGGAAATCAA+TGG | 0.542169 | 4.1:-59377693 | MS.gene73993:CDS |
| GATCTTGTGTCACCACTCCC+TGG | 0.543570 | 4.1:-59376208 | MS.gene73993:CDS |
| TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4.1:+59377298 | None:intergenic |
| GTTGTGTTGAAAATAGGGAA+TGG | 0.558649 | 4.1:+59376262 | None:intergenic |
| CTCCATCTCCCAAACCATCA+AGG | 0.560309 | 4.1:-59377577 | MS.gene73993:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4.1:+59377333 | None:intergenic |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4.1:+59377639 | None:intergenic |
| CTCTAATATTAGGAGCGTCT+AGG | 0.567931 | 4.1:-59377533 | MS.gene73993:CDS |
| CATGAACTCCATGTGACACT+GGG | 0.571284 | 4.1:+59377622 | None:intergenic |
| GTGATGCTATAACTTGATCA+AGG | 0.574591 | 4.1:+59375810 | None:intergenic |
| ATTAGAGCATACCATTGACC+AGG | 0.578535 | 4.1:+59377549 | None:intergenic |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4.1:-59377431 | MS.gene73993:CDS |
| TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4.1:-59377300 | MS.gene73993:intron |
| ACATTACCTTCTGGTGACCT+GGG | 0.583918 | 4.1:+59378345 | None:intergenic |
| TGTTCTTAGAATTTGTGCAA+TGG | 0.591903 | 4.1:+59376081 | None:intergenic |
| CAGTGGAGCTTGTTGCAGGT+AGG | 0.597409 | 4.1:-59376111 | MS.gene73993:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4.1:+59377453 | None:intergenic |
| GCCATTTGGAAAAGGAGCAG+TGG | 0.599196 | 4.1:-59376128 | MS.gene73993:CDS |
| CTTGATGGTTTGGGAGATGG+AGG | 0.600334 | 4.1:+59377578 | None:intergenic |
| ATGGACCCTCTTCAAAGCCA+GGG | 0.606005 | 4.1:+59376281 | None:intergenic |
| AGAAACCCTGGCTTTGAAGA+GGG | 0.606940 | 4.1:-59376286 | MS.gene73993:CDS |
| TATTTGCTAATGTTCATCCC+AGG | 0.608084 | 4.1:-59378362 | MS.gene73993:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4.1:+59377433 | None:intergenic |
| ATGTTCTTCCCAGTGTCACA+TGG | 0.627696 | 4.1:-59377630 | MS.gene73993:CDS |
| AAAGTTACATTCCATAACCC+TGG | 0.629174 | 4.1:-59377381 | MS.gene73993:CDS |
| CTATAACTTGATCAAGGACA+GGG | 0.632443 | 4.1:+59375816 | None:intergenic |
| CTAGTAGAATATATCTCTGG+AGG | 0.635119 | 4.1:-59377669 | MS.gene73993:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.642666 | 4.1:+59377345 | None:intergenic |
| TAGGATCTTCTTGCATACCA+GGG | 0.643241 | 4.1:+59377364 | None:intergenic |
| GATGATATTGGATCTATGTG+TGG | 0.643357 | 4.1:-59375839 | MS.gene73993:CDS |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4.1:+59377471 | None:intergenic |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 4.1:-59376008 | MS.gene73993:CDS |
| ATGCAAGAAGATCCTACTTG+TGG | 0.646402 | 4.1:-59377357 | MS.gene73993:CDS |
| GTTCATCCCAGGTCACCAGA+AGG | 0.652959 | 4.1:-59378351 | MS.gene73993:intron |
| GGGATTCAATAATCCAGCCA+GGG | 0.660484 | 4.1:+59376191 | None:intergenic |
| TCTGGAGGTCCACAACCTGG+AGG | 0.689197 | 4.1:-59377654 | MS.gene73993:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4.1:+59377474 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTCTTTTTTTTTTTG+TGG | + | chr4.1:59377493-59377512 | None:intergenic | 10.0% |
| !! | CTTTGAATCAATAAATTTAA+TGG | + | chr4.1:59378066-59378085 | None:intergenic | 15.0% |
| !! | GTTATGTACAAAAAATATAT+TGG | + | chr4.1:59376385-59376404 | None:intergenic | 15.0% |
| !!! | ATTAAGTGCTTAATTTTTAT+AGG | - | chr4.1:59377611-59377630 | MS.gene73993:CDS | 15.0% |
| !!! | CTTGATAATTTTTTGAAAAT+TGG | + | chr4.1:59377878-59377897 | None:intergenic | 15.0% |
| !! | AATTAACCTATTTACTTTCT+TGG | - | chr4.1:59377824-59377843 | MS.gene73993:intron | 20.0% |
| !! | AATTCAAAATTGCTCTATTT+AGG | - | chr4.1:59377734-59377753 | MS.gene73993:CDS | 20.0% |
| !! | ATTAACCTATTTACTTTCTT+GGG | - | chr4.1:59377825-59377844 | MS.gene73993:intron | 20.0% |
| !! | ATTTCCCTCAAAAAAAATAA+CGG | - | chr4.1:59377564-59377583 | MS.gene73993:CDS | 20.0% |
| !! | CTAAATAATATTTCATGTAG+AGG | + | chr4.1:59377117-59377136 | None:intergenic | 20.0% |
| !! | GTACAAAAAATATATTGGAA+AGG | + | chr4.1:59376380-59376399 | None:intergenic | 20.0% |
| !! | TAAGGGAAAAACAAAAAATA+GGG | + | chr4.1:59376429-59376448 | None:intergenic | 20.0% |
| !! | TACAATATGAAATTCACAAT+TGG | - | chr4.1:59378182-59378201 | MS.gene73993:intron | 20.0% |
| !! | TTAAAGTTTACTTCCAAAAT+GGG | - | chr4.1:59376446-59376465 | MS.gene73993:intron | 20.0% |
| !! | TTAAGGGAAAAACAAAAAAT+AGG | + | chr4.1:59376430-59376449 | None:intergenic | 20.0% |
| !!! | AATAAATTTAATGGCTTTGA+GGG | + | chr4.1:59378057-59378076 | None:intergenic | 20.0% |
| !!! | AATTCCGTTATTTTTTTTGA+GGG | + | chr4.1:59377571-59377590 | None:intergenic | 20.0% |
| !!! | ATTTTGGAAGTAAACTTTAA+GGG | + | chr4.1:59376446-59376465 | None:intergenic | 20.0% |
| !!! | TAAATAGAGCAATTTTGAAT+TGG | + | chr4.1:59377735-59377754 | None:intergenic | 20.0% |
| !!! | TAATTCCGTTATTTTTTTTG+AGG | + | chr4.1:59377572-59377591 | None:intergenic | 20.0% |
| !!! | TTAAGCACTTAATTTTCAAA+AGG | + | chr4.1:59377604-59377623 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTTTTTTGTGG+TGG | + | chr4.1:59377490-59377509 | None:intergenic | 20.0% |
| ! | AAAGTTCCTTTCAAATCTTT+AGG | - | chr4.1:59378269-59378288 | MS.gene73993:intron | 25.0% |
| ! | AATACTGTTGAAGATTATGA+TGG | - | chr4.1:59377213-59377232 | MS.gene73993:intron | 25.0% |
| ! | AATGTCTTGAATATTATGCT+TGG | + | chr4.1:59376352-59376371 | None:intergenic | 25.0% |
| ! | ACCAAATTATCTGCAAATAT+AGG | + | chr4.1:59377918-59377937 | None:intergenic | 25.0% |
| ! | AGTGATAAGTACAAAAAAAC+TGG | + | chr4.1:59377271-59377290 | None:intergenic | 25.0% |
| ! | ATACTGTTGAAGATTATGAT+GGG | - | chr4.1:59377214-59377233 | MS.gene73993:intron | 25.0% |
| ! | CTTAAAGTTTACTTCCAAAA+TGG | - | chr4.1:59376445-59376464 | MS.gene73993:intron | 25.0% |
| ! | GATCAGAAATTCAGAATATA+AGG | + | chr4.1:59376407-59376426 | None:intergenic | 25.0% |
| ! | GTAGCTCCTTATATAAAAAT+GGG | + | chr4.1:59377798-59377817 | None:intergenic | 25.0% |
| ! | TAATGTTGAATTGTTGTGAT+TGG | - | chr4.1:59377028-59377047 | MS.gene73993:intron | 25.0% |
| ! | TACCAGTAACAAATATGAAT+TGG | + | chr4.1:59375921-59375940 | None:intergenic | 25.0% |
| ! | TGTAGCTCCTTATATAAAAA+TGG | + | chr4.1:59377799-59377818 | None:intergenic | 25.0% |
| ! | TTCATATTGTAGACTTTGTT+TGG | + | chr4.1:59378173-59378192 | None:intergenic | 25.0% |
| ! | TTGTAAGTTTAGCAAAATCA+TGG | - | chr4.1:59376238-59376257 | MS.gene73993:CDS | 25.0% |
| ! | TTGTTTCCTTTATGAATCTT+GGG | + | chr4.1:59376492-59376511 | None:intergenic | 25.0% |
| !! | CAATAAATTTAATGGCTTTG+AGG | + | chr4.1:59378058-59378077 | None:intergenic | 25.0% |
| !!! | ACATGACCCATTTTTATATA+AGG | - | chr4.1:59377789-59377808 | MS.gene73993:intron | 25.0% |
| !!! | CATTTGTTGTGTTGAAAATA+GGG | + | chr4.1:59377971-59377990 | None:intergenic | 25.0% |
| !!! | CATTTTGGAAGTAAACTTTA+AGG | + | chr4.1:59376447-59376466 | None:intergenic | 25.0% |
| AAAACATTCACTTCCCAAAT+GGG | - | chr4.1:59376522-59376541 | MS.gene73993:intron | 30.0% | |
| ACAATTGGAGATGGAAAAAA+TGG | - | chr4.1:59378197-59378216 | MS.gene73993:intron | 30.0% | |
| ATAAAGGAAACAAGACTCAT+TGG | - | chr4.1:59376499-59376518 | MS.gene73993:intron | 30.0% | |
| ATAAGTACAAAAAAACTGGC+GGG | + | chr4.1:59377267-59377286 | None:intergenic | 30.0% | |
| ATAGCTCTTTCTATCATACA+AGG | - | chr4.1:59378360-59378379 | MS.gene73993:CDS | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4.1:59378188-59378207 | MS.gene73993:intron | 30.0% | |
| ATGAACAATGTCCATTTATC+TGG | - | chr4.1:59376950-59376969 | MS.gene73993:intron | 30.0% | |
| CAATGGTATGCTCTAATATT+AGG | - | chr4.1:59376682-59376701 | MS.gene73993:intron | 30.0% | |
| CAATGTAATCAGATTTGTGA+CGG | + | chr4.1:59376118-59376137 | None:intergenic | 30.0% | |
| CGAATAGAGTGTATTAACAT+TGG | - | chr4.1:59377176-59377195 | MS.gene73993:intron | 30.0% | |
| CTTGAATATTATGCTTGGAT+TGG | + | chr4.1:59376347-59376366 | None:intergenic | 30.0% | |
| CTTGTTTCCTTTATGAATCT+TGG | + | chr4.1:59376493-59376512 | None:intergenic | 30.0% | |
| GATAAGTACAAAAAAACTGG+CGG | + | chr4.1:59377268-59377287 | None:intergenic | 30.0% | |
| GCCTATATTTGCAGATAATT+TGG | - | chr4.1:59377914-59377933 | MS.gene73993:intron | 30.0% | |
| TAAGTTTAGCAAAATCATGG+TGG | - | chr4.1:59376241-59376260 | MS.gene73993:CDS | 30.0% | |
| TGTTCTTAGAATTTGTGCAA+TGG | + | chr4.1:59378147-59378166 | None:intergenic | 30.0% | |
| ! | AGTTTTTGCCAAAATGATAG+TGG | - | chr4.1:59376294-59376313 | MS.gene73993:CDS | 30.0% |
| ! | CATACAAGGATTGATGATAT+TGG | - | chr4.1:59378374-59378393 | MS.gene73993:CDS | 30.0% |
| ! | CCTATTTTCAACACAACAAA+TGG | - | chr4.1:59377969-59377988 | MS.gene73993:intron | 30.0% |
| ! | CCTTTCAAATCTTTAGGAAA+GGG | - | chr4.1:59378275-59378294 | MS.gene73993:intron | 30.0% |
| ! | TCCTTTCAAATCTTTAGGAA+AGG | - | chr4.1:59378274-59378293 | MS.gene73993:intron | 30.0% |
| ! | TGCCAATTCATATTTGTTAC+TGG | - | chr4.1:59375916-59375935 | MS.gene73993:CDS | 30.0% |
| !! | CCATTTGTTGTGTTGAAAAT+AGG | + | chr4.1:59377972-59377991 | None:intergenic | 30.0% |
| !!! | CTTTTTTTTTTTGTGGTGGT+CGG | + | chr4.1:59377486-59377505 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGTC+GGG | + | chr4.1:59377485-59377504 | None:intergenic | 30.0% |
| AAAGTTACATTCCATAACCC+TGG | - | chr4.1:59376844-59376863 | MS.gene73993:intron | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | + | chr4.1:59376795-59376814 | None:intergenic | 35.0% | |
| ACACTTCATATCAGACATGT+CGG | - | chr4.1:59376072-59376091 | MS.gene73993:CDS | 35.0% | |
| CAAACACTTTATAGCCTCAA+TGG | - | chr4.1:59376778-59376797 | MS.gene73993:intron | 35.0% | |
| CATTGTTCATTACCTCTTGT+CGG | + | chr4.1:59376940-59376959 | None:intergenic | 35.0% | |
| CCCTTTCCTAAAGATTTGAA+AGG | + | chr4.1:59378278-59378297 | None:intergenic | 35.0% | |
| CTAGTAGAATATATCTCTGG+AGG | - | chr4.1:59376556-59376575 | MS.gene73993:intron | 35.0% | |
| CTATAACTTGATCAAGGACA+GGG | + | chr4.1:59378412-59378431 | None:intergenic | 35.0% | |
| GAAAACATTCACTTCCCAAA+TGG | - | chr4.1:59376521-59376540 | MS.gene73993:intron | 35.0% | |
| GACTTCCCAAGAAAGTAAAT+AGG | + | chr4.1:59377833-59377852 | None:intergenic | 35.0% | |
| GATAATTTGGTAAGAAACCC+TGG | - | chr4.1:59377927-59377946 | MS.gene73993:intron | 35.0% | |
| GATGATATTGGATCTATGTG+TGG | - | chr4.1:59378386-59378405 | MS.gene73993:CDS | 35.0% | |
| GATGGAAAAAATGGTTGTCA+TGG | - | chr4.1:59378206-59378225 | MS.gene73993:intron | 35.0% | |
| GGTCTAGTAGAATATATCTC+TGG | - | chr4.1:59376553-59376572 | MS.gene73993:intron | 35.0% | |
| GTGATGCTATAACTTGATCA+AGG | + | chr4.1:59378418-59378437 | None:intergenic | 35.0% | |
| GTTGTGTTGAAAATAGGGAA+TGG | + | chr4.1:59377966-59377985 | None:intergenic | 35.0% | |
| TAGAGTTGAACATTACCTTC+TGG | + | chr4.1:59375892-59375911 | None:intergenic | 35.0% | |
| TCCTTTATGAATCTTGGGTT+TGG | + | chr4.1:59376487-59376506 | None:intergenic | 35.0% | |
| ! | AAGAATTTCCAAGTGCCATT+TGG | - | chr4.1:59378083-59378102 | MS.gene73993:intron | 35.0% |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.1:59376796-59376815 | MS.gene73993:intron | 35.0% |
| ! | ACAGTGAACCACTATCATTT+TGG | + | chr4.1:59376305-59376324 | None:intergenic | 35.0% |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | + | chr4.1:59376775-59376794 | None:intergenic | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.1:59376795-59376814 | MS.gene73993:intron | 35.0% |
| ! | GAATATTATGCTTGGATTGG+AGG | + | chr4.1:59376344-59376363 | None:intergenic | 35.0% |
| ! | TATTTGCTAATGTTCATCCC+AGG | - | chr4.1:59375863-59375882 | MS.gene73993:CDS | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.1:59376794-59376813 | MS.gene73993:intron | 35.0% |
| ! | TCTCTTCAAAGTTCCCATTT+TGG | + | chr4.1:59376462-59376481 | None:intergenic | 35.0% |
| !! | ACAAGCTGATTTGTTGAGAT+TGG | + | chr4.1:59377005-59377024 | None:intergenic | 35.0% |
| !! | AGACCATTGATTTCCCATTT+GGG | + | chr4.1:59376538-59376557 | None:intergenic | 35.0% |
| !! | TAGACCATTGATTTCCCATT+TGG | + | chr4.1:59376539-59376558 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGTCG+GGG | + | chr4.1:59377484-59377503 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGATTG+TGG | + | chr4.1:59376757-59376776 | None:intergenic | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4.1:59376895-59376914 | None:intergenic | 40.0% | |
| ATGCAAGAAGATCCTACTTG+TGG | - | chr4.1:59376868-59376887 | MS.gene73993:intron | 40.0% | |
| ATTAGAGCATACCATTGACC+AGG | + | chr4.1:59376679-59376698 | None:intergenic | 40.0% | |
| ATTCTCTGCAGTCATGCAAA+AGG | - | chr4.1:59376973-59376992 | MS.gene73993:intron | 40.0% | |
| CTGCAGAGAATCCAGATAAA+TGG | + | chr4.1:59376964-59376983 | None:intergenic | 40.0% | |
| CTTCCCAAATGGGAAATCAA+TGG | - | chr4.1:59376532-59376551 | MS.gene73993:intron | 40.0% | |
| GCCAAACCCAAGATTCATAA+AGG | - | chr4.1:59376483-59376502 | MS.gene73993:intron | 40.0% | |
| GCTATAACTTGATCAAGGAC+AGG | + | chr4.1:59378413-59378432 | None:intergenic | 40.0% | |
| TAGGATCTTCTTGCATACCA+GGG | + | chr4.1:59376864-59376883 | None:intergenic | 40.0% | |
| TGGTTGTCATGGATCAATGA+TGG | - | chr4.1:59378217-59378236 | MS.gene73993:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.1:59376804-59376823 | MS.gene73993:intron | 40.0% | |
| TTGCTTAACATGTGCCCTAA+GGG | - | chr4.1:59377757-59377776 | MS.gene73993:CDS | 40.0% | |
| ! | AGGTTTGACCTTGATGGTTT+GGG | + | chr4.1:59376659-59376678 | None:intergenic | 40.0% |
| ! | GACACAAGATCTTGTTGCTT+TGG | + | chr4.1:59378008-59378027 | None:intergenic | 40.0% |
| ! | TGAGCTTATCTCAGTTGGTA+AGG | - | chr4.1:59377445-59377464 | MS.gene73993:CDS | 40.0% |
| !! | ACAAGATCTTGTTGCTTTGG+AGG | + | chr4.1:59378005-59378024 | None:intergenic | 40.0% |
| !! | CATGTTAACTTGTGCCCTTA+GGG | + | chr4.1:59377774-59377793 | None:intergenic | 40.0% |
| !! | CTCTAATATTAGGAGCGTCT+AGG | - | chr4.1:59376692-59376711 | MS.gene73993:intron | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | + | chr4.1:59377775-59377794 | None:intergenic | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+AGG | - | chr4.1:59378089-59378108 | MS.gene73993:intron | 40.0% |
| AACATTACCTTCTGGTGACC+TGG | + | chr4.1:59375884-59375903 | None:intergenic | 45.0% | |
| ACATTACCTTCTGGTGACCT+GGG | + | chr4.1:59375883-59375902 | None:intergenic | 45.0% | |
| AGGGATTCAATAATCCAGCC+AGG | + | chr4.1:59378038-59378057 | None:intergenic | 45.0% | |
| ATGTTCTTCCCAGTGTCACA+TGG | - | chr4.1:59376595-59376614 | MS.gene73993:intron | 45.0% | |
| CAAACCATCAAGGTCAAACC+TGG | - | chr4.1:59376658-59376677 | MS.gene73993:intron | 45.0% | |
| CATGAACTCCATGTGACACT+GGG | + | chr4.1:59376606-59376625 | None:intergenic | 45.0% | |
| CCAACTGAGATAAGCTCATG+AGG | + | chr4.1:59377443-59377462 | None:intergenic | 45.0% | |
| CCTCATGAGCTTATCTCAGT+TGG | - | chr4.1:59377440-59377459 | MS.gene73993:CDS | 45.0% | |
| CTTCTTGCATACCAGGGTTA+TGG | + | chr4.1:59376858-59376877 | None:intergenic | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | - | chr4.1:59376616-59376635 | MS.gene73993:intron | 45.0% | |
| GGGATTCAATAATCCAGCCA+GGG | + | chr4.1:59378037-59378056 | None:intergenic | 45.0% | |
| GTAGGATCTTCTTGCATACC+AGG | + | chr4.1:59376865-59376884 | None:intergenic | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | - | chr4.1:59377756-59377775 | MS.gene73993:CDS | 45.0% | |
| TCAAGGTCAAACCTGGTCAA+TGG | - | chr4.1:59376665-59376684 | MS.gene73993:intron | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | + | chr4.1:59376934-59376953 | None:intergenic | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4.1:59376883-59376902 | None:intergenic | 45.0% | |
| TTGACCAGGTTTGACCTTGA+TGG | + | chr4.1:59376665-59376684 | None:intergenic | 45.0% | |
| ! | ATGAAGTGTTCGTGCTACAG+AGG | + | chr4.1:59376061-59376080 | None:intergenic | 45.0% |
| ! | CAGGTTTGACCTTGATGGTT+TGG | + | chr4.1:59376660-59376679 | None:intergenic | 45.0% |
| ! | CTCCTTTTCCAAATGGCACT+TGG | + | chr4.1:59378094-59378113 | None:intergenic | 45.0% |
| ! | TCCACTGCTCCTTTTCCAAA+TGG | + | chr4.1:59378101-59378120 | None:intergenic | 45.0% |
| ! | TCCTACTTGTGGTCCACTTT+TGG | - | chr4.1:59376879-59376898 | MS.gene73993:intron | 45.0% |
| !! | AAGAAACCCTGGCTTTGAAG+AGG | - | chr4.1:59377938-59377957 | MS.gene73993:intron | 45.0% |
| !! | AGAAACCCTGGCTTTGAAGA+GGG | - | chr4.1:59377939-59377958 | MS.gene73993:intron | 45.0% |
| !! | AAAAAAATAATAAATAGTTA+AGG | - | chr4.1:59377392-59377411 | MS.gene73993:CDS | 5.0% |
| !! | AAAAAATAATAAATAGTTAA+GGG | - | chr4.1:59377393-59377412 | MS.gene73993:CDS | 5.0% |
| !!! | TATTTTTTTCAAATTATTAT+TGG | - | chr4.1:59376146-59376165 | MS.gene73993:CDS | 5.0% |
| AAGAACATGCCTCCAGGTTG+TGG | + | chr4.1:59376583-59376602 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+AGG | + | chr4.1:59377948-59377967 | None:intergenic | 50.0% | |
| AGACATGTCAGTGTCGTGTC+TGG | - | chr4.1:59376172-59376191 | MS.gene73993:CDS | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.1:59376742-59376761 | MS.gene73993:intron | 50.0% | |
| ATGGACCCTCTTCAAAGCCA+GGG | + | chr4.1:59377947-59377966 | None:intergenic | 50.0% | |
| CTCCATCTCCCAAACCATCA+AGG | - | chr4.1:59376648-59376667 | MS.gene73993:intron | 50.0% | |
| GCATGAACTCCATGTGACAC+TGG | + | chr4.1:59376607-59376626 | None:intergenic | 50.0% | |
| GCCATTTGGAAAAGGAGCAG+TGG | - | chr4.1:59378097-59378116 | MS.gene73993:intron | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | + | chr4.1:59376754-59376773 | None:intergenic | 50.0% | |
| TCAATAATCCAGCCAGGGAG+TGG | + | chr4.1:59378032-59378051 | None:intergenic | 50.0% | |
| ! | CTTGATGGTTTGGGAGATGG+AGG | + | chr4.1:59376650-59376669 | None:intergenic | 50.0% |
| ! | GACCTTGATGGTTTGGGAGA+TGG | + | chr4.1:59376653-59376672 | None:intergenic | 50.0% |
| !! | AGTGGAGCTTGTTGCAGGTA+GGG | - | chr4.1:59378115-59378134 | MS.gene73993:intron | 50.0% |
| ACTGGGAAGAACATGCCTCC+AGG | + | chr4.1:59376589-59376608 | None:intergenic | 55.0% | |
| GATCTTGTGTCACCACTCCC+TGG | - | chr4.1:59378017-59378036 | MS.gene73993:intron | 55.0% | |
| GTTCATCCCAGGTCACCAGA+AGG | - | chr4.1:59375874-59375893 | MS.gene73993:CDS | 55.0% | |
| ! | ATCTCTGGAGGTCCACAACC+TGG | - | chr4.1:59376568-59376587 | MS.gene73993:intron | 55.0% |
| ! | TACCTCTTGTCGGCATCGGA+GGG | + | chr4.1:59376930-59376949 | None:intergenic | 55.0% |
| ! | TTACCTCTTGTCGGCATCGG+AGG | + | chr4.1:59376931-59376950 | None:intergenic | 55.0% |
| !! | CAGTGGAGCTTGTTGCAGGT+AGG | - | chr4.1:59378114-59378133 | MS.gene73993:intron | 55.0% |
| TACCCTCCGATGCCGACAAG+AGG | - | chr4.1:59376925-59376944 | MS.gene73993:intron | 60.0% | |
| TCTGGAGGTCCACAACCTGG+AGG | - | chr4.1:59376571-59376590 | MS.gene73993:intron | 60.0% | |
| TTGTGTCACCACTCCCTGGC+TGG | - | chr4.1:59378021-59378040 | MS.gene73993:intron | 60.0% | |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | - | chr4.1:59378110-59378129 | MS.gene73993:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 59375799 | 59378448 | 59375799 | ID=MS.gene73993 |
| chr4.1 | mRNA | 59375799 | 59378448 | 59375799 | ID=MS.gene73993.t1;Parent=MS.gene73993 |
| chr4.1 | exon | 59378352 | 59378448 | 59378352 | ID=MS.gene73993.t1.exon1;Parent=MS.gene73993.t1 |
| chr4.1 | CDS | 59378352 | 59378448 | 59378352 | ID=cds.MS.gene73993.t1;Parent=MS.gene73993.t1 |
| chr4.1 | exon | 59377301 | 59377795 | 59377301 | ID=MS.gene73993.t1.exon2;Parent=MS.gene73993.t1 |
| chr4.1 | CDS | 59377301 | 59377795 | 59377301 | ID=cds.MS.gene73993.t1;Parent=MS.gene73993.t1 |
| chr4.1 | exon | 59375799 | 59376319 | 59375799 | ID=MS.gene73993.t1.exon3;Parent=MS.gene73993.t1 |
| chr4.1 | CDS | 59375799 | 59376319 | 59375799 | ID=cds.MS.gene73993.t1;Parent=MS.gene73993.t1 |
| Gene Sequence |
| Protein sequence |
