Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73995.t1 | XP_003605795.2 | 95.1 | 367 | 18 | 0 | 1 | 367 | 4 | 370 | 1.10E-205 | 725.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73995.t1 | G7JUL6 | 95.1 | 367 | 18 | 0 | 1 | 367 | 1 | 367 | 7.7e-206 | 725.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene73995 | 0.804916 | 1.72E-49 | -1.69E-46 |
| MS.gene050133 | MS.gene73995 | 0.830944 | 2.21E-55 | -1.69E-46 |
| MS.gene050315 | MS.gene73995 | -0.802645 | 5.08E-49 | -1.69E-46 |
| MS.gene050329 | MS.gene73995 | 0.807275 | 5.47E-50 | -1.69E-46 |
| MS.gene050710 | MS.gene73995 | 0.813999 | 1.93E-51 | -1.69E-46 |
| MS.gene050720 | MS.gene73995 | 0.803005 | 4.28E-49 | -1.69E-46 |
| MS.gene051158 | MS.gene73995 | 0.815007 | 1.15E-51 | -1.69E-46 |
| MS.gene051552 | MS.gene73995 | 0.836404 | 9.54E-57 | -1.69E-46 |
| MS.gene051996 | MS.gene73995 | 0.834444 | 2.99E-56 | -1.69E-46 |
| MS.gene052223 | MS.gene73995 | 0.889286 | 2.77E-73 | -1.69E-46 |
| MS.gene052705 | MS.gene73995 | 0.800483 | 1.41E-48 | -1.69E-46 |
| MS.gene05362 | MS.gene73995 | 0.803092 | 4.11E-49 | -1.69E-46 |
| MS.gene054138 | MS.gene73995 | 0.812257 | 4.64E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene73995 | 0.82359 | 1.28E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene73995 | 0.861075 | 1.32E-63 | -1.69E-46 |
| MS.gene056330 | MS.gene73995 | 0.858289 | 9.13E-63 | -1.69E-46 |
| MS.gene056633 | MS.gene73995 | -0.813666 | 2.28E-51 | -1.69E-46 |
| MS.gene056680 | MS.gene73995 | 0.842252 | 2.90E-58 | -1.69E-46 |
| MS.gene056690 | MS.gene73995 | 0.828398 | 9.19E-55 | -1.69E-46 |
| MS.gene056691 | MS.gene73995 | 0.808196 | 3.49E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene73995 | 0.843474 | 1.37E-58 | -1.69E-46 |
| MS.gene056923 | MS.gene73995 | 0.801336 | 9.45E-49 | -1.69E-46 |
| MS.gene057717 | MS.gene73995 | 0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene73995 | 0.826678 | 2.38E-54 | -1.69E-46 |
| MS.gene05926 | MS.gene73995 | 0.800737 | 1.25E-48 | -1.69E-46 |
| MS.gene059891 | MS.gene73995 | 0.840204 | 1.00E-57 | -1.69E-46 |
| MS.gene059892 | MS.gene73995 | 0.851436 | 8.88E-61 | -1.69E-46 |
| MS.gene060087 | MS.gene73995 | 0.845937 | 2.97E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51556 | MS.gene73995 | PPI |
| MS.gene015971 | MS.gene73995 | PPI |
| MS.gene60267 | MS.gene73995 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73995.t1 | MTR_4g039740 | 95.095 | 367 | 18 | 0 | 1 | 367 | 1 | 367 | 0.0 | 727 |
| MS.gene73995.t1 | MTR_4g039720 | 91.576 | 368 | 30 | 1 | 1 | 367 | 4 | 371 | 0.0 | 699 |
| MS.gene73995.t1 | MTR_4g039680 | 88.556 | 367 | 42 | 0 | 1 | 367 | 1 | 367 | 0.0 | 682 |
| MS.gene73995.t1 | MTR_0045s0110 | 79.019 | 367 | 77 | 0 | 1 | 367 | 1 | 367 | 0.0 | 603 |
| MS.gene73995.t1 | MTR_1g011800 | 53.939 | 330 | 150 | 2 | 34 | 361 | 39 | 368 | 1.95e-129 | 376 |
| MS.gene73995.t1 | MTR_2g103170 | 49.401 | 334 | 163 | 2 | 34 | 361 | 28 | 361 | 1.09e-113 | 336 |
| MS.gene73995.t1 | MTR_2g019600 | 41.390 | 331 | 193 | 1 | 34 | 363 | 35 | 365 | 2.85e-93 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73995.t1 | AT3G08030 | 68.235 | 340 | 107 | 1 | 29 | 367 | 26 | 365 | 2.80e-177 | 497 |
| MS.gene73995.t1 | AT3G08030 | 69.350 | 323 | 98 | 1 | 46 | 367 | 1 | 323 | 3.51e-171 | 480 |
| MS.gene73995.t1 | AT2G41810 | 58.242 | 364 | 148 | 3 | 3 | 363 | 4 | 366 | 2.68e-151 | 431 |
| MS.gene73995.t1 | AT2G41800 | 60.542 | 332 | 130 | 1 | 34 | 364 | 36 | 367 | 4.58e-150 | 428 |
| MS.gene73995.t1 | AT5G25460 | 53.315 | 362 | 157 | 4 | 6 | 361 | 6 | 361 | 7.19e-136 | 392 |
| MS.gene73995.t1 | AT5G11420 | 55.319 | 329 | 146 | 1 | 34 | 361 | 30 | 358 | 3.60e-135 | 390 |
| MS.gene73995.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 34 | 361 | 29 | 357 | 5.61e-133 | 384 |
| MS.gene73995.t1 | AT4G32460 | 53.799 | 329 | 151 | 1 | 34 | 361 | 29 | 357 | 5.61e-133 | 384 |
| MS.gene73995.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 46 | 361 | 1 | 317 | 2.00e-130 | 377 |
| MS.gene73995.t1 | AT4G32460 | 54.259 | 317 | 144 | 1 | 46 | 361 | 1 | 317 | 2.00e-130 | 377 |
| MS.gene73995.t1 | AT1G80240 | 50.760 | 329 | 161 | 1 | 34 | 361 | 32 | 360 | 7.51e-115 | 338 |
| MS.gene73995.t1 | AT2G34510 | 41.964 | 336 | 189 | 2 | 34 | 363 | 43 | 378 | 8.71e-95 | 288 |
| MS.gene73995.t1 | AT1G29980 | 40.588 | 340 | 192 | 2 | 34 | 363 | 7 | 346 | 1.37e-94 | 287 |
| MS.gene73995.t1 | AT1G29980 | 40.588 | 340 | 192 | 2 | 34 | 363 | 43 | 382 | 4.46e-94 | 287 |
| MS.gene73995.t1 | AT2G34510 | 43.151 | 292 | 160 | 2 | 78 | 363 | 1 | 292 | 1.08e-83 | 257 |
| MS.gene73995.t1 | AT5G14150 | 26.842 | 380 | 231 | 13 | 9 | 367 | 8 | 361 | 3.36e-29 | 116 |
| MS.gene73995.t1 | AT5G14150 | 26.842 | 380 | 231 | 13 | 9 | 367 | 8 | 361 | 3.36e-29 | 116 |
Find 99 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACCAAAATTGATGATTT+TGG | 0.110893 | 4.1:-59358885 | MS.gene73995:CDS |
| CTTTGAATAAATGAATTTAA+TGG | 0.183061 | 4.1:+59359196 | None:intergenic |
| ACTTCCAAAATCATCAATTT+TGG | 0.185567 | 4.1:+59358881 | None:intergenic |
| CCATTGGTTGAGTTGAAAAT+AGG | 0.216368 | 4.1:+59359290 | None:intergenic |
| CCCTACTTGTGGTCCACTTT+TGG | 0.234226 | 4.1:-59359932 | MS.gene73995:CDS |
| GACACAAGATCTTGTTGTTT+TGG | 0.237874 | 4.1:+59359254 | None:intergenic |
| CCCTTTCCTAAAGATTTAAA+AGG | 0.249510 | 4.1:+59358984 | None:intergenic |
| TTCATGTTGTAGACTTTGTT+TGG | 0.314228 | 4.1:+59359089 | None:intergenic |
| AATGAATTTAATGGCTTTGA+GGG | 0.316396 | 4.1:+59359205 | None:intergenic |
| ACATGGTATGCTCTAATCTT+AGG | 0.324044 | 4.1:-59360129 | MS.gene73995:CDS |
| CTTCTTGCATACCAGGGTTA+TGG | 0.338309 | 4.1:+59359956 | None:intergenic |
| TAGACCACTGGTTTCCCATT+TGG | 0.342054 | 4.1:+59360275 | None:intergenic |
| CATTGGTTGAGTTGAAAATA+GGG | 0.362525 | 4.1:+59359291 | None:intergenic |
| AGACCACTGGTTTCCCATTT+GGG | 0.363737 | 4.1:+59360276 | None:intergenic |
| TGCTTTATGTATCCCGGGTT+TGG | 0.373955 | 4.1:+59360327 | None:intergenic |
| TGTACCAGGTTTGACTTTGA+TGG | 0.385600 | 4.1:+59360149 | None:intergenic |
| CAAACACTTTATAGCATCAA+TGG | 0.391387 | 4.1:-59360033 | MS.gene73995:CDS |
| ATAAGGCAAATTTAAGCAAC+GGG | 0.400142 | 4.1:+59358822 | None:intergenic |
| CTTGTTTGCTTTATGTATCC+CGG | 0.400586 | 4.1:+59360321 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.406097 | 4.1:-59360016 | MS.gene73995:CDS |
| ACAATTGGAGATGGAAGAAA+TGG | 0.406784 | 4.1:-59359062 | MS.gene73995:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4.1:-59360007 | MS.gene73995:CDS |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4.1:-59360069 | MS.gene73995:CDS |
| AAATGAATTTAATGGCTTTG+AGG | 0.419481 | 4.1:+59359204 | None:intergenic |
| GACTTTGATGGTTTGTGAGA+TGG | 0.433465 | 4.1:+59360161 | None:intergenic |
| CATGGTTCATTACCTCTTGT+CGG | 0.436338 | 4.1:+59359874 | None:intergenic |
| CACATGGTGTTCATGCTGTT+AGG | 0.441276 | 4.1:-59360200 | MS.gene73995:CDS |
| GTAGGGTCTTCTTGCATACC+AGG | 0.445669 | 4.1:+59359949 | None:intergenic |
| GGAGCAGTGGAACTTGTTGC+AGG | 0.445825 | 4.1:-59359149 | MS.gene73995:CDS |
| ACTATAACTTGATCAAGAAC+CGG | 0.458438 | 4.1:+59358849 | None:intergenic |
| TTTCAAGTGCCATTTGGAAA+AGG | 0.459013 | 4.1:-59359170 | MS.gene73995:CDS |
| TACAACATGAAATTCACAAT+TGG | 0.459725 | 4.1:-59359077 | MS.gene73995:CDS |
| GATCTTGTGTCTCCTCTCCC+TGG | 0.465625 | 4.1:-59359242 | MS.gene73995:CDS |
| TTGTGTCTCCTCTCCCTGGT+TGG | 0.465969 | 4.1:-59359238 | MS.gene73995:CDS |
| GGAAACATTCACTTCCCAAA+TGG | 0.468129 | 4.1:-59360290 | MS.gene73995:CDS |
| TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4.1:+59359883 | None:intergenic |
| ATCTTGAGCACAAGTTCTTG+TGG | 0.474361 | 4.1:+59360104 | None:intergenic |
| GCTGCTCAAAGTTCCCGTTT+CGG | 0.476983 | 4.1:+59360352 | None:intergenic |
| GAAACATTCACTTCCCAAAT+GGG | 0.478945 | 4.1:-59360289 | MS.gene73995:CDS |
| TGCTGCTTCAGCATTTGCTA+AGG | 0.479893 | 4.1:-59361119 | MS.gene73995:CDS |
| TCATTACCTCTTGTCGGCAT+CGG | 0.480847 | 4.1:+59359880 | None:intergenic |
| GCATTACCTTCTGGTGACCT+AGG | 0.482374 | 4.1:+59361091 | None:intergenic |
| AGTAAGAAACCCTGGCTTTG+AGG | 0.483634 | 4.1:-59359324 | MS.gene73995:CDS |
| AATGGACCTTCCTCAAAGCC+AGG | 0.503208 | 4.1:+59359314 | None:intergenic |
| ATCACTGGTGGGCCACAACC+TGG | 0.505369 | 4.1:-59360243 | MS.gene73995:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.507745 | 4.1:-59359071 | MS.gene73995:CDS |
| CTTTGAGCAGCAACCAAACC+CGG | 0.508898 | 4.1:-59360340 | MS.gene73995:CDS |
| TGGAGGAAGTATGACACCAT+TGG | 0.523499 | 4.1:+59359274 | None:intergenic |
| GGTGTTCATGCTGTTAGGCT+TGG | 0.526553 | 4.1:-59360195 | MS.gene73995:CDS |
| CATAAAGCAAACAAGACTCA+TGG | 0.527099 | 4.1:-59360313 | MS.gene73995:CDS |
| GCATGAACACCATGTGACAC+TGG | 0.527294 | 4.1:+59360207 | None:intergenic |
| TTGTTTGCTTTATGTATCCC+GGG | 0.530146 | 4.1:+59360322 | None:intergenic |
| GTTGAGTTGAAAATAGGGAA+TGG | 0.535417 | 4.1:+59359296 | None:intergenic |
| AGTGGAACTTGTTGCAGGAA+GGG | 0.537973 | 4.1:-59359144 | MS.gene73995:CDS |
| AATAAGGCAAATTTAAGCAA+CGG | 0.544457 | 4.1:+59358821 | None:intergenic |
| CTAGTTGAGTATATCACTGG+TGG | 0.547165 | 4.1:-59360255 | MS.gene73995:CDS |
| ATAAAGCAAACAAGACTCAT+GGG | 0.549653 | 4.1:-59360312 | MS.gene73995:CDS |
| CAGTGGAACTTGTTGCAGGA+AGG | 0.550407 | 4.1:-59359145 | MS.gene73995:CDS |
| GGTCTAGTTGAGTATATCAC+TGG | 0.552750 | 4.1:-59360258 | MS.gene73995:CDS |
| TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4.1:+59359884 | None:intergenic |
| TCAATAATCCAACCAGGGAG+AGG | 0.555884 | 4.1:+59359230 | None:intergenic |
| CTATAACTTGATCAAGAACC+GGG | 0.557234 | 4.1:+59358850 | None:intergenic |
| TCAAAGTCAAACCTGGTACA+TGG | 0.559181 | 4.1:-59360146 | MS.gene73995:CDS |
| CAAACCATCAAAGTCAAACC+TGG | 0.562139 | 4.1:-59360153 | MS.gene73995:CDS |
| CATTACCTTCTGGTGACCTA+GGG | 0.562998 | 4.1:+59361092 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.563498 | 4.1:-59360015 | MS.gene73995:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4.1:+59359919 | None:intergenic |
| CATGAACACCATGTGACACT+GGG | 0.564983 | 4.1:+59360208 | None:intergenic |
| GATGGAAGAAATGGATGTCA+TGG | 0.567802 | 4.1:-59359053 | MS.gene73995:CDS |
| ATGCTATAAAGTGTTTGCAA+AGG | 0.573282 | 4.1:+59360039 | None:intergenic |
| CCAAAAGTGGACCACAAGTA+GGG | 0.578033 | 4.1:+59359932 | None:intergenic |
| ATTAGAGCATACCATGTACC+AGG | 0.580105 | 4.1:+59360135 | None:intergenic |
| TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4.1:-59359886 | MS.gene73995:intron |
| GATATACTCAACTAGACCAC+TGG | 0.583672 | 4.1:+59360263 | None:intergenic |
| AGAAACCCTGGCTTTGAGGA+AGG | 0.589091 | 4.1:-59359320 | MS.gene73995:CDS |
| TGTTCTTAGAATTTGTGCAA+TGG | 0.591903 | 4.1:+59359115 | None:intergenic |
| GCCATTTGGAAAAGGAGCAG+TGG | 0.592376 | 4.1:-59359162 | MS.gene73995:CDS |
| TCAATGGTGATGTTATTGCT+TGG | 0.594334 | 4.1:-59360017 | MS.gene73995:CDS |
| GCTAATTTAGTAAGAAACCC+TGG | 0.594765 | 4.1:-59359332 | MS.gene73995:CDS |
| CATTTGCTAAGGTTCACCCT+AGG | 0.605861 | 4.1:-59361108 | MS.gene73995:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.607049 | 4.1:+59359931 | None:intergenic |
| ATGGACCTTCCTCAAAGCCA+GGG | 0.610936 | 4.1:+59359315 | None:intergenic |
| TGGATGTCATGGATCAATGA+TGG | 0.615968 | 4.1:-59359042 | MS.gene73995:CDS |
| AAAGTTACCTTCCATAACCC+TGG | 0.617417 | 4.1:-59359967 | MS.gene73995:CDS |
| AGGGATTCAATAATCCAACC+AGG | 0.617420 | 4.1:+59359224 | None:intergenic |
| TTGCATACCAGGGTTATGGA+AGG | 0.619234 | 4.1:+59359960 | None:intergenic |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4.1:+59360057 | None:intergenic |
| TAGTTGAGTATATCACTGGT+GGG | 0.646961 | 4.1:-59360254 | MS.gene73995:CDS |
| TTTGAGCAGCAACCAAACCC+GGG | 0.654449 | 4.1:-59360339 | MS.gene73995:CDS |
| ATGCAAGAAGACCCTACTTG+TGG | 0.657722 | 4.1:-59359943 | MS.gene73995:CDS |
| TAGGGTCTTCTTGCATACCA+GGG | 0.661160 | 4.1:+59359950 | None:intergenic |
| AAGGCAAATTTAAGCAACGG+GGG | 0.680606 | 4.1:+59358824 | None:intergenic |
| CTTCCCAAATGGGAAACCAG+TGG | 0.686658 | 4.1:-59360279 | MS.gene73995:CDS |
| TAAAGCAAACAAGACTCATG+GGG | 0.692569 | 4.1:-59360311 | MS.gene73995:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4.1:+59360060 | None:intergenic |
| GGGATTCAATAATCCAACCA+GGG | 0.702559 | 4.1:+59359225 | None:intergenic |
| GTTCACCCTAGGTCACCAGA+AGG | 0.709847 | 4.1:-59361097 | MS.gene73995:intron |
| ACTGGTGGGCCACAACCTGG+AGG | 0.722510 | 4.1:-59360240 | MS.gene73995:CDS |
| TAAGGCAAATTTAAGCAACG+GGG | 0.741093 | 4.1:+59358823 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATATAAAATTGTAGAT+TGG | - | chr4.1:59359131-59359150 | MS.gene73995:CDS | 10.0% |
| !! | AAGAAATGAAAGAAAAATAT+TGG | - | chr4.1:59359170-59359189 | MS.gene73995:CDS | 15.0% |
| !! | ATAATAATAAATTTGACGAA+TGG | - | chr4.1:59360473-59360492 | MS.gene73995:intron | 15.0% |
| !! | CTTTGAATAAATGAATTTAA+TGG | + | chr4.1:59360803-59360822 | None:intergenic | 15.0% |
| !! | TATATATCTTCTTTAATGTT+GGG | - | chr4.1:59360585-59360604 | MS.gene73995:intron | 15.0% |
| !!! | AAATACTACTTTGATTATTT+TGG | - | chr4.1:59360297-59360316 | MS.gene73995:CDS | 15.0% |
| !!! | GATATAAACTTAATTTGTTA+AGG | - | chr4.1:59360546-59360565 | MS.gene73995:intron | 15.0% |
| !! | AAAATAAATGTATAGAGCAA+AGG | + | chr4.1:59359534-59359553 | None:intergenic | 20.0% |
| !! | ATATATCTTCTTTAATGTTG+GGG | - | chr4.1:59360586-59360605 | MS.gene73995:intron | 20.0% |
| !! | CTATATATCTTCTTTAATGT+TGG | - | chr4.1:59360584-59360603 | MS.gene73995:intron | 20.0% |
| !! | TATATAATAAGAAGTTGCAT+CGG | + | chr4.1:59359374-59359393 | None:intergenic | 20.0% |
| !! | TTCATATTAAATTGCTAACA+AGG | - | chr4.1:59359046-59359065 | MS.gene73995:CDS | 20.0% |
| !!! | AAAGTTCCTTTTAAATCTTT+AGG | - | chr4.1:59361006-59361025 | MS.gene73995:intron | 20.0% |
| !!! | ACATTGACTTTAGTAAAAAT+TGG | + | chr4.1:59360351-59360370 | None:intergenic | 20.0% |
| ! | ATCTATATTCGACTAAAAAG+TGG | - | chr4.1:59359193-59359212 | MS.gene73995:CDS | 25.0% |
| ! | TACAACATGAAATTCACAAT+TGG | - | chr4.1:59360919-59360938 | MS.gene73995:intron | 25.0% |
| ! | TCGAGAAGTAAATATAATGT+CGG | - | chr4.1:59359437-59359456 | MS.gene73995:intron | 25.0% |
| ! | TGTTTCATTGTTTGAATCTA+AGG | - | chr4.1:59358971-59358990 | MS.gene73995:CDS | 25.0% |
| !! | AAATGAATTTAATGGCTTTG+AGG | + | chr4.1:59360795-59360814 | None:intergenic | 25.0% |
| !! | ACAATTGGATTTGTTTAGAT+AGG | + | chr4.1:59360191-59360210 | None:intergenic | 25.0% |
| !! | ACTTCCAAAATCATCAATTT+TGG | + | chr4.1:59361118-59361137 | None:intergenic | 25.0% |
| !!! | AATGAATTTAATGGCTTTGA+GGG | + | chr4.1:59360794-59360813 | None:intergenic | 25.0% |
| !!! | ACAAATCCAATTGTTTTTGT+TGG | - | chr4.1:59360197-59360216 | MS.gene73995:CDS | 25.0% |
| !!! | CATACCAAAATTGATGATTT+TGG | - | chr4.1:59361111-59361130 | MS.gene73995:CDS | 25.0% |
| !!! | CCTTTTAAATCTTTAGGAAA+GGG | - | chr4.1:59361012-59361031 | MS.gene73995:intron | 25.0% |
| !!! | TCCTTTTAAATCTTTAGGAA+AGG | - | chr4.1:59361011-59361030 | MS.gene73995:intron | 25.0% |
| ACTATAACTTGATCAAGAAC+CGG | + | chr4.1:59361150-59361169 | None:intergenic | 30.0% | |
| ATAAAGCAAACAAGACTCAT+GGG | - | chr4.1:59359684-59359703 | MS.gene73995:intron | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | - | chr4.1:59360925-59360944 | MS.gene73995:intron | 30.0% | |
| ATTCTTCTCTATATCACAAC+TGG | + | chr4.1:59359094-59359113 | None:intergenic | 30.0% | |
| CAAACACTTTATAGCATCAA+TGG | - | chr4.1:59359963-59359982 | MS.gene73995:CDS | 30.0% | |
| CCCTTTCCTAAAGATTTAAA+AGG | + | chr4.1:59361015-59361034 | None:intergenic | 30.0% | |
| CGAGAAGTAAATATAATGTC+GGG | - | chr4.1:59359438-59359457 | MS.gene73995:intron | 30.0% | |
| CTAACTCACATATCTACTTT+AGG | - | chr4.1:59360250-59360269 | MS.gene73995:CDS | 30.0% | |
| TCTAAACTGTCAAGATATGA+AGG | + | chr4.1:59359326-59359345 | None:intergenic | 30.0% | |
| TCTAGTCCAACAAAAACAAT+TGG | + | chr4.1:59360206-59360225 | None:intergenic | 30.0% | |
| TGATATAGAGAAGAATGAAG+TGG | - | chr4.1:59359098-59359117 | MS.gene73995:CDS | 30.0% | |
| TGTTCTTAGAATTTGTGCAA+TGG | + | chr4.1:59360884-59360903 | None:intergenic | 30.0% | |
| TTCATGTTGTAGACTTTGTT+TGG | + | chr4.1:59360910-59360929 | None:intergenic | 30.0% | |
| ! | ACGAATGATAGTGTAATGTT+TGG | + | chr4.1:59359274-59359293 | None:intergenic | 30.0% |
| ! | ATGCTATAAAGTGTTTGCAA+AGG | + | chr4.1:59359960-59359979 | None:intergenic | 30.0% |
| ! | ATTTTACAAGTGTCTCTAAG+TGG | - | chr4.1:59360524-59360543 | MS.gene73995:intron | 30.0% |
| ! | CTTAAAGTTTTCTTCCGAAA+CGG | - | chr4.1:59359630-59359649 | MS.gene73995:intron | 30.0% |
| ! | TTAAAGTTTTCTTCCGAAAC+GGG | - | chr4.1:59359631-59359650 | MS.gene73995:intron | 30.0% |
| !! | CATTGGTTGAGTTGAAAATA+GGG | + | chr4.1:59360708-59360727 | None:intergenic | 30.0% |
| ACAATTGGAGATGGAAGAAA+TGG | - | chr4.1:59360934-59360953 | MS.gene73995:intron | 35.0% | |
| ACATGGTATGCTCTAATCTT+AGG | - | chr4.1:59359867-59359886 | MS.gene73995:intron | 35.0% | |
| AGAATCAGGATTCATTGACA+TGG | + | chr4.1:59360143-59360162 | None:intergenic | 35.0% | |
| ATGTGCTTATTGAAGTTGCT+AGG | - | chr4.1:59359502-59359521 | MS.gene73995:intron | 35.0% | |
| CATAAAGCAAACAAGACTCA+TGG | - | chr4.1:59359683-59359702 | MS.gene73995:intron | 35.0% | |
| CGTTTCGGAAGAAAACTTTA+AGG | + | chr4.1:59359632-59359651 | None:intergenic | 35.0% | |
| CTATAACTTGATCAAGAACC+GGG | + | chr4.1:59361149-59361168 | None:intergenic | 35.0% | |
| CTTGTTTGCTTTATGTATCC+CGG | + | chr4.1:59359678-59359697 | None:intergenic | 35.0% | |
| GAAACATTCACTTCCCAAAT+GGG | - | chr4.1:59359707-59359726 | MS.gene73995:intron | 35.0% | |
| GCTAATTTAGTAAGAAACCC+TGG | - | chr4.1:59360664-59360683 | MS.gene73995:intron | 35.0% | |
| TAAAGCAAACAAGACTCATG+GGG | - | chr4.1:59359685-59359704 | MS.gene73995:intron | 35.0% | |
| TAGTTGAGTATATCACTGGT+GGG | - | chr4.1:59359742-59359761 | MS.gene73995:intron | 35.0% | |
| TTGTTTGCTTTATGTATCCC+GGG | + | chr4.1:59359677-59359696 | None:intergenic | 35.0% | |
| ! | AATGGTGATGTTATTGCTTG+GGG | - | chr4.1:59359981-59360000 | MS.gene73995:CDS | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | - | chr4.1:59359980-59359999 | MS.gene73995:CDS | 35.0% |
| ! | CCTATTTTCAACTCAACCAA+TGG | - | chr4.1:59360706-59360725 | MS.gene73995:intron | 35.0% |
| ! | GGATTTGTTTAGATAGGACT+CGG | + | chr4.1:59360185-59360204 | None:intergenic | 35.0% |
| ! | GTTTGGAACAAATCTGCATT+AGG | + | chr4.1:59359257-59359276 | None:intergenic | 35.0% |
| ! | TAATGTTGGGGTTTGTGTTT+TGG | - | chr4.1:59360598-59360617 | MS.gene73995:intron | 35.0% |
| ! | TCAATGGTGATGTTATTGCT+TGG | - | chr4.1:59359979-59359998 | MS.gene73995:CDS | 35.0% |
| !! | CCATTGGTTGAGTTGAAAAT+AGG | + | chr4.1:59360709-59360728 | None:intergenic | 35.0% |
| !! | GATGATTTTGGAAGTATGTG+TGG | - | chr4.1:59361123-59361142 | MS.gene73995:CDS | 35.0% |
| !! | GTTGAGTTGAAAATAGGGAA+TGG | + | chr4.1:59360703-59360722 | None:intergenic | 35.0% |
| !! | TTTCAAGTGCCATTTGGAAA+AGG | - | chr4.1:59360826-59360845 | MS.gene73995:intron | 35.0% |
| !!! | AAGCATTTTCAAGTGCCATT+TGG | - | chr4.1:59360820-59360839 | MS.gene73995:intron | 35.0% |
| !!! | ACAAGATCTTGTTGTTTTGG+AGG | + | chr4.1:59360742-59360761 | None:intergenic | 35.0% |
| !!! | GACACAAGATCTTGTTGTTT+TGG | + | chr4.1:59360745-59360764 | None:intergenic | 35.0% |
| AAAGGAACATCACCAGATTG+TGG | + | chr4.1:59359942-59359961 | None:intergenic | 40.0% | |
| AAAGTTACCTTCCATAACCC+TGG | - | chr4.1:59360029-59360048 | MS.gene73995:CDS | 40.0% | |
| AATGAATCCTGATTCTCTGC+AGG | - | chr4.1:59360147-59360166 | MS.gene73995:CDS | 40.0% | |
| AGGGATTCAATAATCCAACC+AGG | + | chr4.1:59360775-59360794 | None:intergenic | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | + | chr4.1:59360080-59360099 | None:intergenic | 40.0% | |
| ATCTTGAGCACAAGTTCTTG+TGG | + | chr4.1:59359895-59359914 | None:intergenic | 40.0% | |
| ATGAATCCTGATTCTCTGCA+GGG | - | chr4.1:59360148-59360167 | MS.gene73995:CDS | 40.0% | |
| ATTAGAGCATACCATGTACC+AGG | + | chr4.1:59359864-59359883 | None:intergenic | 40.0% | |
| CAAACCATCAAAGTCAAACC+TGG | - | chr4.1:59359843-59359862 | MS.gene73995:intron | 40.0% | |
| CATGGTTCATTACCTCTTGT+CGG | + | chr4.1:59360125-59360144 | None:intergenic | 40.0% | |
| CTAGTTGAGTATATCACTGG+TGG | - | chr4.1:59359741-59359760 | MS.gene73995:intron | 40.0% | |
| GATATACTCAACTAGACCAC+TGG | + | chr4.1:59359736-59359755 | None:intergenic | 40.0% | |
| GATGGAAGAAATGGATGTCA+TGG | - | chr4.1:59360943-59360962 | MS.gene73995:intron | 40.0% | |
| GGAAACATTCACTTCCCAAA+TGG | - | chr4.1:59359706-59359725 | MS.gene73995:intron | 40.0% | |
| GGGATTCAATAATCCAACCA+GGG | + | chr4.1:59360774-59360793 | None:intergenic | 40.0% | |
| GGTCTAGTTGAGTATATCAC+TGG | - | chr4.1:59359738-59359757 | MS.gene73995:intron | 40.0% | |
| TAGAGTTGAGCATTACCTTC+TGG | + | chr4.1:59358917-59358936 | None:intergenic | 40.0% | |
| TCAAAGTCAAACCTGGTACA+TGG | - | chr4.1:59359850-59359869 | MS.gene73995:intron | 40.0% | |
| TGGATGTCATGGATCAATGA+TGG | - | chr4.1:59360954-59360973 | MS.gene73995:intron | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | - | chr4.1:59359989-59360008 | MS.gene73995:CDS | 40.0% | |
| ! | ATAAGAAGTTGCATCGGTGT+CGG | + | chr4.1:59359368-59359387 | None:intergenic | 40.0% |
| ! | ATGTTTTTCCCAGTGTCACA+TGG | - | chr4.1:59359780-59359799 | MS.gene73995:intron | 40.0% |
| ! | GACTTTGATGGTTTGTGAGA+TGG | + | chr4.1:59359838-59359857 | None:intergenic | 40.0% |
| ! | TGTACCAGGTTTGACTTTGA+TGG | + | chr4.1:59359850-59359869 | None:intergenic | 40.0% |
| !! | GTGCTGTTCTGATTTTGCTT+TGG | - | chr4.1:59359599-59359618 | MS.gene73995:intron | 40.0% |
| AAAAACATGCCTCCAGGTTG+TGG | + | chr4.1:59359768-59359787 | None:intergenic | 45.0% | |
| ATGCAAGAAGACCCTACTTG+TGG | - | chr4.1:59360053-59360072 | MS.gene73995:CDS | 45.0% | |
| CACATGGTGTTCATGCTGTT+AGG | - | chr4.1:59359796-59359815 | MS.gene73995:intron | 45.0% | |
| CATGAACACCATGTGACACT+GGG | + | chr4.1:59359791-59359810 | None:intergenic | 45.0% | |
| CATTACCTTCTGGTGACCTA+GGG | + | chr4.1:59358907-59358926 | None:intergenic | 45.0% | |
| CCAAAAGTGGACCACAAGTA+GGG | + | chr4.1:59360067-59360086 | None:intergenic | 45.0% | |
| CTTCTTGCATACCAGGGTTA+TGG | + | chr4.1:59360043-59360062 | None:intergenic | 45.0% | |
| TAGGGTCTTCTTGCATACCA+GGG | + | chr4.1:59360049-59360068 | None:intergenic | 45.0% | |
| TCAATAATCCAACCAGGGAG+AGG | + | chr4.1:59360769-59360788 | None:intergenic | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | + | chr4.1:59360119-59360138 | None:intergenic | 45.0% | |
| TCCAAAAGTGGACCACAAGT+AGG | + | chr4.1:59360068-59360087 | None:intergenic | 45.0% | |
| TGCTTTATGTATCCCGGGTT+TGG | + | chr4.1:59359672-59359691 | None:intergenic | 45.0% | |
| TTCTCTGCAGGGTATGCAAT+TGG | - | chr4.1:59360159-59360178 | MS.gene73995:CDS | 45.0% | |
| TTGCATACCAGGGTTATGGA+AGG | + | chr4.1:59360039-59360058 | None:intergenic | 45.0% | |
| ! | CATTTGCTAAGGTTCACCCT+AGG | - | chr4.1:59358888-59358907 | MS.gene73995:CDS | 45.0% |
| ! | TCCACTGCTCCTTTTCCAAA+TGG | + | chr4.1:59360838-59360857 | None:intergenic | 45.0% |
| ! | TGCTGCTTCAGCATTTGCTA+AGG | - | chr4.1:59358877-59358896 | MS.gene73995:CDS | 45.0% |
| ! | TGGAGGAAGTATGACACCAT+TGG | + | chr4.1:59360725-59360744 | None:intergenic | 45.0% |
| !! | AGACCACTGGTTTCCCATTT+GGG | + | chr4.1:59359723-59359742 | None:intergenic | 45.0% |
| !! | AGTAAGAAACCCTGGCTTTG+AGG | - | chr4.1:59360672-59360691 | MS.gene73995:intron | 45.0% |
| !! | AGTGGAACTTGTTGCAGGAA+GGG | - | chr4.1:59360852-59360871 | MS.gene73995:intron | 45.0% |
| !! | TAGACCACTGGTTTCCCATT+TGG | + | chr4.1:59359724-59359743 | None:intergenic | 45.0% |
| !! | TTTTGGAAGTATGTGTGGCC+CGG | - | chr4.1:59361128-59361147 | MS.gene73995:CDS | 45.0% |
| AATGGACCTTCCTCAAAGCC+AGG | + | chr4.1:59360685-59360704 | None:intergenic | 50.0% | |
| ACTGGGAAAAACATGCCTCC+AGG | + | chr4.1:59359774-59359793 | None:intergenic | 50.0% | |
| ATCTCAGTGCCTCCACAATC+TGG | - | chr4.1:59359927-59359946 | MS.gene73995:CDS | 50.0% | |
| ATGGACCTTCCTCAAAGCCA+GGG | + | chr4.1:59360684-59360703 | None:intergenic | 50.0% | |
| CTTCCCAAATGGGAAACCAG+TGG | - | chr4.1:59359717-59359736 | MS.gene73995:intron | 50.0% | |
| CTTTGAGCAGCAACCAAACC+CGG | - | chr4.1:59359656-59359675 | MS.gene73995:intron | 50.0% | |
| GAGAAGAATGAAGTGGCGCT+AGG | - | chr4.1:59359105-59359124 | MS.gene73995:CDS | 50.0% | |
| GCATGAACACCATGTGACAC+TGG | + | chr4.1:59359792-59359811 | None:intergenic | 50.0% | |
| GCATTACCTTCTGGTGACCT+AGG | + | chr4.1:59358908-59358927 | None:intergenic | 50.0% | |
| GCCATTTGGAAAAGGAGCAG+TGG | - | chr4.1:59360834-59360853 | MS.gene73995:intron | 50.0% | |
| GCTGCTCAAAGTTCCCGTTT+CGG | + | chr4.1:59359647-59359666 | None:intergenic | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | + | chr4.1:59359939-59359958 | None:intergenic | 50.0% | |
| GGTGTTCATGCTGTTAGGCT+TGG | - | chr4.1:59359801-59359820 | MS.gene73995:intron | 50.0% | |
| GTAGGGTCTTCTTGCATACC+AGG | + | chr4.1:59360050-59360069 | None:intergenic | 50.0% | |
| TGCATACCCTGCAGAGAATC+AGG | + | chr4.1:59360157-59360176 | None:intergenic | 50.0% | |
| TTTGAGCAGCAACCAAACCC+GGG | - | chr4.1:59359657-59359676 | MS.gene73995:intron | 50.0% | |
| ! | CCCTACTTGTGGTCCACTTT+TGG | - | chr4.1:59360064-59360083 | MS.gene73995:CDS | 50.0% |
| !! | AGAAACCCTGGCTTTGAGGA+AGG | - | chr4.1:59360676-59360695 | MS.gene73995:intron | 50.0% |
| !! | CAGTGGAACTTGTTGCAGGA+AGG | - | chr4.1:59360851-59360870 | MS.gene73995:intron | 50.0% |
| GATCTTGTGTCTCCTCTCCC+TGG | - | chr4.1:59360754-59360773 | MS.gene73995:intron | 55.0% | |
| GTTCACCCTAGGTCACCAGA+AGG | - | chr4.1:59358899-59358918 | MS.gene73995:CDS | 55.0% | |
| TTGTGTCTCCTCTCCCTGGT+TGG | - | chr4.1:59360758-59360777 | MS.gene73995:intron | 55.0% | |
| ! | TACCTCTTGTCGGCATCGGA+GGG | + | chr4.1:59360115-59360134 | None:intergenic | 55.0% |
| ! | TTACCTCTTGTCGGCATCGG+AGG | + | chr4.1:59360116-59360135 | None:intergenic | 55.0% |
| !! | GGAGCAGTGGAACTTGTTGC+AGG | - | chr4.1:59360847-59360866 | MS.gene73995:intron | 55.0% |
| TACCCTCCGATGCCGACAAG+AGG | - | chr4.1:59360110-59360129 | MS.gene73995:CDS | 60.0% | |
| ! | ATCACTGGTGGGCCACAACC+TGG | - | chr4.1:59359753-59359772 | MS.gene73995:intron | 60.0% |
| ! | ACTGGTGGGCCACAACCTGG+AGG | - | chr4.1:59359756-59359775 | MS.gene73995:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 59358833 | 59361185 | 59358833 | ID=MS.gene73995 |
| chr4.1 | mRNA | 59358833 | 59361185 | 59358833 | ID=MS.gene73995.t1;Parent=MS.gene73995 |
| chr4.1 | exon | 59361098 | 59361185 | 59361098 | ID=MS.gene73995.t1.exon1;Parent=MS.gene73995.t1 |
| chr4.1 | CDS | 59361098 | 59361185 | 59361098 | ID=cds.MS.gene73995.t1;Parent=MS.gene73995.t1 |
| chr4.1 | exon | 59359887 | 59360381 | 59359887 | ID=MS.gene73995.t1.exon2;Parent=MS.gene73995.t1 |
| chr4.1 | CDS | 59359887 | 59360381 | 59359887 | ID=cds.MS.gene73995.t1;Parent=MS.gene73995.t1 |
| chr4.1 | exon | 59358833 | 59359353 | 59358833 | ID=MS.gene73995.t1.exon3;Parent=MS.gene73995.t1 |
| chr4.1 | CDS | 59358833 | 59359353 | 59358833 | ID=cds.MS.gene73995.t1;Parent=MS.gene73995.t1 |
| Gene Sequence |
| Protein sequence |
