Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74671.t1 | XP_013451654.1 | 92.2 | 219 | 17 | 0 | 2 | 220 | 76 | 294 | 4.40E-106 | 394 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74671.t1 | Q9LW20 | 61.2 | 214 | 74 | 1 | 7 | 220 | 76 | 280 | 5.3e-68 | 258.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74671.t1 | A0A072U7L4 | 92.2 | 219 | 17 | 0 | 2 | 220 | 76 | 294 | 3.2e-106 | 394.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene74671 | 0.80855 | 2.93E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene74671 | 0.809457 | 1.87E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene74671 | 0.821914 | 3.13E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene74671 | 0.806967 | 6.36E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene74671 | 0.809866 | 1.53E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene74671 | 0.80351 | 3.37E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene74671 | 0.810907 | 9.13E-51 | -1.69E-46 |
| MS.gene051171 | MS.gene74671 | 0.839347 | 1.67E-57 | -1.69E-46 |
| MS.gene051240 | MS.gene74671 | 0.805848 | 1.10E-49 | -1.69E-46 |
| MS.gene051242 | MS.gene74671 | 0.831134 | 1.98E-55 | -1.69E-46 |
| MS.gene051244 | MS.gene74671 | 0.800753 | 1.24E-48 | -1.69E-46 |
| MS.gene051471 | MS.gene74671 | 0.81821 | 2.21E-52 | -1.69E-46 |
| MS.gene051582 | MS.gene74671 | 0.839419 | 1.60E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene74671 | 0.825696 | 4.07E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene74671 | 0.810708 | 1.01E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene74671 | 0.835738 | 1.41E-56 | -1.69E-46 |
| MS.gene053907 | MS.gene74671 | 0.862855 | 3.77E-64 | -1.69E-46 |
| MS.gene053928 | MS.gene74671 | 0.81318 | 2.92E-51 | -1.69E-46 |
| MS.gene053971 | MS.gene74671 | 0.853658 | 2.07E-61 | -1.69E-46 |
| MS.gene055277 | MS.gene74671 | 0.822408 | 2.41E-53 | -1.69E-46 |
| MS.gene055390 | MS.gene74671 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene74671 | 0.819253 | 1.28E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene74671 | 0.848845 | 4.73E-60 | -1.69E-46 |
| MS.gene05553 | MS.gene74671 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene055712 | MS.gene74671 | 0.802492 | 5.47E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene74671 | 0.817537 | 3.13E-52 | -1.69E-46 |
| MS.gene056451 | MS.gene74671 | 0.828536 | 8.52E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene74671 | 0.821799 | 3.33E-53 | -1.69E-46 |
| MS.gene056633 | MS.gene74671 | 0.802983 | 4.33E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene74671 | 0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene056664 | MS.gene74671 | 0.806253 | 9.00E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene74671 | 0.808592 | 2.87E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene74671 | 0.829791 | 4.22E-55 | -1.69E-46 |
| MS.gene057121 | MS.gene74671 | 0.842023 | 3.33E-58 | -1.69E-46 |
| MS.gene057439 | MS.gene74671 | 0.816078 | 6.66E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene74671 | 0.821507 | 3.89E-53 | -1.69E-46 |
| MS.gene05811 | MS.gene74671 | 0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene74671 | 0.819041 | 1.43E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene74671 | 0.849829 | 2.51E-60 | -1.69E-46 |
| MS.gene058276 | MS.gene74671 | 0.873426 | 1.48E-67 | -1.69E-46 |
| MS.gene058293 | MS.gene74671 | 0.825645 | 4.19E-54 | -1.69E-46 |
| MS.gene058746 | MS.gene74671 | 0.846553 | 2.02E-59 | -1.69E-46 |
| MS.gene059518 | MS.gene74671 | 0.806103 | 9.68E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene74671 | 0.854019 | 1.63E-61 | -1.69E-46 |
| MS.gene060407 | MS.gene74671 | 0.833181 | 6.18E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene74671 | 0.834398 | 3.07E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74671.t1 | MTR_6g033510 | 92.237 | 219 | 17 | 0 | 2 | 220 | 19 | 237 | 6.41e-150 | 416 |
| MS.gene74671.t1 | MTR_6g033510 | 92.237 | 219 | 17 | 0 | 2 | 220 | 76 | 294 | 2.19e-149 | 417 |
| MS.gene74671.t1 | MTR_6g033510 | 92.237 | 219 | 17 | 0 | 2 | 220 | 74 | 292 | 3.45e-149 | 416 |
| MS.gene74671.t1 | MTR_6g033510 | 91.781 | 219 | 17 | 1 | 2 | 220 | 76 | 293 | 8.28e-147 | 410 |
| MS.gene74671.t1 | MTR_6g033510 | 91.011 | 178 | 16 | 0 | 2 | 179 | 76 | 253 | 8.67e-119 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74671.t1 | AT3G26900 | 61.215 | 214 | 74 | 1 | 7 | 220 | 76 | 280 | 1.76e-92 | 273 |
| MS.gene74671.t1 | AT3G26900 | 61.215 | 214 | 74 | 1 | 7 | 220 | 76 | 280 | 1.76e-92 | 273 |
| MS.gene74671.t1 | AT3G26900 | 61.215 | 214 | 74 | 1 | 7 | 220 | 76 | 280 | 1.76e-92 | 273 |
| MS.gene74671.t1 | AT2G21940 | 34.848 | 198 | 128 | 1 | 7 | 203 | 90 | 287 | 1.60e-40 | 140 |
| MS.gene74671.t1 | AT2G21940 | 34.848 | 198 | 128 | 1 | 7 | 203 | 89 | 286 | 1.63e-40 | 140 |
| MS.gene74671.t1 | AT2G21940 | 34.848 | 198 | 128 | 1 | 7 | 203 | 89 | 286 | 1.63e-40 | 140 |
| MS.gene74671.t1 | AT2G21940 | 34.848 | 198 | 128 | 1 | 7 | 203 | 89 | 286 | 1.63e-40 | 140 |
| MS.gene74671.t1 | AT4G39540 | 34.826 | 201 | 128 | 3 | 7 | 204 | 85 | 285 | 7.87e-38 | 133 |
| MS.gene74671.t1 | AT4G39540 | 34.826 | 201 | 128 | 3 | 7 | 204 | 85 | 285 | 7.87e-38 | 133 |
| MS.gene74671.t1 | AT4G39540 | 33.493 | 209 | 128 | 4 | 7 | 204 | 85 | 293 | 7.96e-35 | 125 |
| MS.gene74671.t1 | AT2G21940 | 34.524 | 168 | 109 | 1 | 7 | 173 | 89 | 256 | 1.81e-30 | 114 |
| MS.gene74671.t1 | AT2G21940 | 34.524 | 168 | 109 | 1 | 7 | 173 | 89 | 256 | 1.81e-30 | 114 |
| MS.gene74671.t1 | AT2G21940 | 34.524 | 168 | 109 | 1 | 7 | 173 | 89 | 256 | 1.81e-30 | 114 |
Find 46 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTTTATTCAGCGATAATT+TGG | 0.187404 | 6.3:-23130294 | MS.gene74671:intron |
| AAGCTCACTCAAAACCAATA+TGG | 0.285845 | 6.3:-23130441 | MS.gene74671:CDS |
| ATTTGCCGGGTTGGTTAAAA+TGG | 0.307457 | 6.3:+23128518 | None:intergenic |
| CGTCTCATCATTCTCTTTGA+AGG | 0.323118 | 6.3:+23130235 | None:intergenic |
| TCATTTGAGATATCTGCTTC+AGG | 0.356204 | 6.3:-23129143 | MS.gene74671:CDS |
| TACAGAAGTAGCTTCTCAAT+TGG | 0.382885 | 6.3:-23128851 | MS.gene74671:intron |
| CTAGTAGTTTGTGCTGGAAA+TGG | 0.407853 | 6.3:-23129669 | MS.gene74671:CDS |
| TGCCATCATCTTCTTTACTC+TGG | 0.422125 | 6.3:+23128553 | None:intergenic |
| ACAGAAGTAGCTTCTCAATT+GGG | 0.430438 | 6.3:-23128850 | MS.gene74671:intron |
| TGAGACATGGGATTACATTC+TGG | 0.435684 | 6.3:-23129226 | MS.gene74671:CDS |
| AGCTCACTCAAAACCAATAT+GGG | 0.442960 | 6.3:-23130440 | MS.gene74671:CDS |
| TACAACAGAAGACATGGCTT+TGG | 0.447101 | 6.3:-23128806 | MS.gene74671:CDS |
| AACAGAAGACATGGCTTTGG+AGG | 0.456859 | 6.3:-23128803 | MS.gene74671:intron |
| GGATTTATCTCTTGCGGTGA+AGG | 0.457375 | 6.3:-23130709 | MS.gene74671:intron |
| ATGGAGGACCCTTTCAGCTC+AGG | 0.458494 | 6.3:+23130565 | None:intergenic |
| GCCTTTAGACATTGTGGCTA+GGG | 0.458945 | 6.3:-23129195 | MS.gene74671:CDS |
| CAAATGAAGGAAATTGACTC+TGG | 0.470222 | 6.3:+23129159 | None:intergenic |
| AATTTGGTGGAAGAAGCATT+AGG | 0.490916 | 6.3:-23130278 | MS.gene74671:CDS |
| ACTTAAGCAATTGTCGTCCA+TGG | 0.493803 | 6.3:-23129697 | MS.gene74671:CDS |
| TGCGATGGATTTATCTCTTG+CGG | 0.493949 | 6.3:-23130715 | None:intergenic |
| ATGTATCCCCTGAGCTGAAA+GGG | 0.504370 | 6.3:-23130573 | MS.gene74671:CDS |
| GAAGCAGATATCTCAAATGA+AGG | 0.516865 | 6.3:+23129146 | None:intergenic |
| AGAATGTAATCCCATGTCTC+AGG | 0.517694 | 6.3:+23129228 | None:intergenic |
| TTGAAGTGAAATAATTGCAT+CGG | 0.531101 | 6.3:+23128951 | None:intergenic |
| TGGAGGACCCTTTCAGCTCA+GGG | 0.534925 | 6.3:+23130566 | None:intergenic |
| AACCAATATGGGAAAACTGC+TGG | 0.535404 | 6.3:-23130429 | MS.gene74671:CDS |
| TATAGGGCGCTCCTGAGACA+TGG | 0.543459 | 6.3:-23129239 | MS.gene74671:intron |
| TTTATTCAGCGATAATTTGG+TGG | 0.546126 | 6.3:-23130291 | MS.gene74671:intron |
| ATAGGGCGCTCCTGAGACAT+GGG | 0.554008 | 6.3:-23129238 | MS.gene74671:intron |
| TCCCTAGCCACAATGTCTAA+AGG | 0.559062 | 6.3:+23129194 | None:intergenic |
| GGTCGGCTAGTAGTTTGTGC+TGG | 0.564609 | 6.3:-23129675 | MS.gene74671:CDS |
| GATGTATCCCCTGAGCTGAA+AGG | 0.568538 | 6.3:-23130574 | MS.gene74671:CDS |
| AGATATGCCTTTAGACATTG+TGG | 0.570047 | 6.3:-23129201 | MS.gene74671:CDS |
| CGACATTACAACAGAAGACA+TGG | 0.570058 | 6.3:-23128812 | MS.gene74671:CDS |
| TGCCTTTAGACATTGTGGCT+AGG | 0.578217 | 6.3:-23129196 | MS.gene74671:CDS |
| GACCAGAGTAAAGAAGATGA+TGG | 0.587138 | 6.3:-23128555 | MS.gene74671:CDS |
| CTTAAGCAATTGTCGTCCAT+GGG | 0.588790 | 6.3:-23129696 | MS.gene74671:CDS |
| AGCAATTGTCGTCCATGGGT+CGG | 0.608358 | 6.3:-23129692 | MS.gene74671:CDS |
| CTATACAATAAGTACAAAGA+CGG | 0.623906 | 6.3:-23128985 | MS.gene74671:CDS |
| CATCAGGTAATGGATGAACT+CGG | 0.628657 | 6.3:-23129012 | MS.gene74671:intron |
| ACAAACTACTAGCCGACCCA+TGG | 0.640556 | 6.3:+23129680 | None:intergenic |
| CAATATGGGAAAACTGCTGG+CGG | 0.668703 | 6.3:-23130426 | MS.gene74671:CDS |
| GACGAGCTTCTATGACTCTG+AGG | 0.674474 | 6.3:-23130216 | MS.gene74671:intron |
| TTGGTGGAAGAAGCATTAGG+TGG | 0.675356 | 6.3:-23130275 | MS.gene74671:CDS |
| GGAGGACCCTTTCAGCTCAG+GGG | 0.693258 | 6.3:+23130567 | None:intergenic |
| TGCTTCAGGATCTTACCCAG+AGG | 0.715084 | 6.3:-23129129 | MS.gene74671:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATATTATTTAGTAA+AGG | + | chr6.3:23129949-23129968 | None:intergenic | 10.0% |
| !! | AAACAATATTATTTAGTAAA+GGG | + | chr6.3:23129948-23129967 | None:intergenic | 10.0% |
| !!! | TACAATTTTTCACTAATTTA+AGG | - | chr6.3:23130643-23130662 | MS.gene74671:intron | 15.0% |
| !! | AATAAGCTTAAAATAGCTAA+TGG | + | chr6.3:23129177-23129196 | None:intergenic | 20.0% |
| !! | ACATGGTAAAAAATGTAAAA+GGG | + | chr6.3:23130339-23130358 | None:intergenic | 20.0% |
| !! | TACATGGTAAAAAATGTAAA+AGG | + | chr6.3:23130340-23130359 | None:intergenic | 20.0% |
| !!! | AAAAAGAAAGAAGCTATTTT+AGG | + | chr6.3:23130373-23130392 | None:intergenic | 20.0% |
| !!! | CAAAGTATATAACTTTTTTC+CGG | - | chr6.3:23130312-23130331 | MS.gene74671:intron | 20.0% |
| !!! | GTCTTTTGTTAGTAATTTTA+TGG | + | chr6.3:23129844-23129863 | None:intergenic | 20.0% |
| !!! | TTTACCAAGTTTTTCATATT+AGG | - | chr6.3:23130509-23130528 | MS.gene74671:intron | 20.0% |
| !!! | TTTTACATTTTTTACCATGT+AGG | - | chr6.3:23130339-23130358 | MS.gene74671:intron | 20.0% |
| ! | AAACCTTGATCAAATAAATC+AGG | + | chr6.3:23128779-23128798 | None:intergenic | 25.0% |
| ! | AACAGAGACATTAACAATTA+AGG | + | chr6.3:23130205-23130224 | None:intergenic | 25.0% |
| ! | AATTGTCTTAGACTTACTTA+GGG | - | chr6.3:23129055-23129074 | MS.gene74671:intron | 25.0% |
| ! | AGCAATTATTAGCTATGATT+TGG | - | chr6.3:23130479-23130498 | MS.gene74671:intron | 25.0% |
| ! | AGGTTTAGATTTACTATAAG+TGG | + | chr6.3:23130185-23130204 | None:intergenic | 25.0% |
| ! | CAAAATTCAACTAATCTGTA+TGG | - | chr6.3:23129604-23129623 | MS.gene74671:intron | 25.0% |
| ! | CTATACAATAAGTACAAAGA+CGG | - | chr6.3:23130258-23130277 | MS.gene74671:CDS | 25.0% |
| ! | CTTCTTACCAATCAAAAATA+TGG | + | chr6.3:23128700-23128719 | None:intergenic | 25.0% |
| ! | TAAGTCGTTTATCCAAAATA+GGG | - | chr6.3:23129316-23129335 | MS.gene74671:intron | 25.0% |
| ! | TAATTGTCTTAGACTTACTT+AGG | - | chr6.3:23129054-23129073 | MS.gene74671:intron | 25.0% |
| ! | TACTTTATTCAGCGATAATT+TGG | - | chr6.3:23128949-23128968 | MS.gene74671:intron | 25.0% |
| ! | TTAAGTCGTTTATCCAAAAT+AGG | - | chr6.3:23129315-23129334 | MS.gene74671:intron | 25.0% |
| ! | TTGAAGTGAAATAATTGCAT+CGG | + | chr6.3:23130295-23130314 | None:intergenic | 25.0% |
| !! | AGGTTTCATTTTGGATATAA+TGG | - | chr6.3:23128891-23128910 | MS.gene74671:intron | 25.0% |
| !! | TTGTAATTTTGTTCCATTCA+AGG | + | chr6.3:23129720-23129739 | None:intergenic | 25.0% |
| !!! | TGCGATATTATTATTTTGAC+AGG | - | chr6.3:23128846-23128865 | MS.gene74671:CDS | 25.0% |
| !!! | TTTTGCTTGTTACTAATTCT+TGG | - | chr6.3:23130553-23130572 | MS.gene74671:intron | 25.0% |
| AAAATGATGCTTGTATGGTA+CGG | + | chr6.3:23130536-23130555 | None:intergenic | 30.0% | |
| AAACTATCTTGGATAGCTTA+TGG | + | chr6.3:23129201-23129220 | None:intergenic | 30.0% | |
| AAGCAAAAATGATGCTTGTA+TGG | + | chr6.3:23130541-23130560 | None:intergenic | 30.0% | |
| ACATGCTCTTAAACTGTTAT+AGG | - | chr6.3:23129987-23130006 | MS.gene74671:intron | 30.0% | |
| ACTAAAAAAAGACACATTCG+AGG | + | chr6.3:23129781-23129800 | None:intergenic | 30.0% | |
| CATCAAGTTTAGCTAAAAAC+TGG | + | chr6.3:23128923-23128942 | None:intergenic | 30.0% | |
| CATGCTCTTAAACTGTTATA+GGG | - | chr6.3:23129988-23130007 | MS.gene74671:intron | 30.0% | |
| CTACCTGATTTATTTGATCA+AGG | - | chr6.3:23128773-23128792 | MS.gene74671:intron | 30.0% | |
| CTTACAACACACACAAATAA+TGG | - | chr6.3:23128722-23128741 | MS.gene74671:intron | 30.0% | |
| CTTACCAATCAAAAATATGG+AGG | + | chr6.3:23128697-23128716 | None:intergenic | 30.0% | |
| GTAAAAAATGTAAAAGGGAC+CGG | + | chr6.3:23130334-23130353 | None:intergenic | 30.0% | |
| GTTCTTCTCACTTAAATTTC+AGG | - | chr6.3:23129433-23129452 | MS.gene74671:intron | 30.0% | |
| TACAGTAAGAAATTACCTCT+GGG | + | chr6.3:23130132-23130151 | None:intergenic | 30.0% | |
| TCTGTTTATTCTCTGGTAAA+AGG | - | chr6.3:23128871-23128890 | MS.gene74671:intron | 30.0% | |
| TGTTAATTGACATCAGGTAA+TGG | - | chr6.3:23130221-23130240 | MS.gene74671:CDS | 30.0% | |
| TTACAGTAAGAAATTACCTC+TGG | + | chr6.3:23130133-23130152 | None:intergenic | 30.0% | |
| TTAGAAGCAATCAGTTATGT+AGG | + | chr6.3:23129397-23129416 | None:intergenic | 30.0% | |
| TTCAAAAAGACTGAATCTCA+GGG | + | chr6.3:23128599-23128618 | None:intergenic | 30.0% | |
| TTTATTCAGCGATAATTTGG+TGG | - | chr6.3:23128952-23128971 | MS.gene74671:CDS | 30.0% | |
| TTTCAAAAAGACTGAATCTC+AGG | + | chr6.3:23128600-23128619 | None:intergenic | 30.0% | |
| ! | GAAAGATCAAACCTTCATTT+TGG | - | chr6.3:23129662-23129681 | MS.gene74671:CDS | 30.0% |
| ! | GCTGATTTCAAAAACTATCT+TGG | + | chr6.3:23129212-23129231 | None:intergenic | 30.0% |
| ! | TCTGGTAAAAGGTTTCATTT+TGG | - | chr6.3:23128882-23128901 | MS.gene74671:intron | 30.0% |
| ! | TTATGGACTAAACTGACTAA+GGG | + | chr6.3:23129827-23129846 | None:intergenic | 30.0% |
| ! | TTTATGGACTAAACTGACTA+AGG | + | chr6.3:23129828-23129847 | None:intergenic | 30.0% |
| AAGCTCACTCAAAACCAATA+TGG | - | chr6.3:23128802-23128821 | MS.gene74671:intron | 35.0% | |
| ACAGAAGTAGCTTCTCAATT+GGG | - | chr6.3:23130393-23130412 | MS.gene74671:intron | 35.0% | |
| ACAGGTATCTGTTTATTCTC+TGG | - | chr6.3:23128864-23128883 | MS.gene74671:intron | 35.0% | |
| ACATTCAAGGACCAAAATGA+AGG | + | chr6.3:23129676-23129695 | None:intergenic | 35.0% | |
| ACTAAGAAAAGACGTATCGA+AGG | + | chr6.3:23129749-23129768 | None:intergenic | 35.0% | |
| AGATATGCCTTTAGACATTG+TGG | - | chr6.3:23130042-23130061 | MS.gene74671:intron | 35.0% | |
| AGCTCACTCAAAACCAATAT+GGG | - | chr6.3:23128803-23128822 | MS.gene74671:intron | 35.0% | |
| ATAAGTTATCCCAACCCAAA+CGG | + | chr6.3:23129134-23129153 | None:intergenic | 35.0% | |
| ATAATGGCTTTCAGTGTTTC+CGG | - | chr6.3:23128738-23128757 | MS.gene74671:intron | 35.0% | |
| CAGTTATGTAGGAATAGGAT+AGG | + | chr6.3:23129386-23129405 | None:intergenic | 35.0% | |
| CGGTCCTAATATGAAAAACT+TGG | + | chr6.3:23130516-23130535 | None:intergenic | 35.0% | |
| GAAGCAGATATCTCAAATGA+AGG | + | chr6.3:23130100-23130119 | None:intergenic | 35.0% | |
| GCAATCAGTTATGTAGGAAT+AGG | + | chr6.3:23129391-23129410 | None:intergenic | 35.0% | |
| TACAGAAGTAGCTTCTCAAT+TGG | - | chr6.3:23130392-23130411 | MS.gene74671:intron | 35.0% | |
| TCACATAAGTCAATCCAAAC+AGG | + | chr6.3:23129081-23129100 | None:intergenic | 35.0% | |
| TGTCCCTTAAATGTGTCAAA+CGG | + | chr6.3:23129912-23129931 | None:intergenic | 35.0% | |
| TGTCTCTGTTAATTGACATC+AGG | - | chr6.3:23130215-23130234 | MS.gene74671:intron | 35.0% | |
| ! | CAAATGAAGGAAATTGACTC+TGG | + | chr6.3:23130087-23130106 | None:intergenic | 35.0% |
| ! | GCTTGTTACTAATTCTTGGA+TGG | - | chr6.3:23130557-23130576 | MS.gene74671:CDS | 35.0% |
| ! | TCATTTGAGATATCTGCTTC+AGG | - | chr6.3:23130100-23130119 | MS.gene74671:intron | 35.0% |
| !! | AATTTGGTGGAAGAAGCATT+AGG | - | chr6.3:23128965-23128984 | MS.gene74671:CDS | 35.0% |
| !!! | AGAAGCTATTTTAGGACTTG+AGG | + | chr6.3:23130365-23130384 | None:intergenic | 35.0% |
| !!! | AGGAAATTGACTCTGGTTTT+CGG | + | chr6.3:23130080-23130099 | None:intergenic | 35.0% |
| AACCAATATGGGAAAACTGC+TGG | - | chr6.3:23128814-23128833 | MS.gene74671:CDS | 40.0% | |
| AAGTAAGTGTGTGACCGTTT+GGG | - | chr6.3:23129117-23129136 | MS.gene74671:intron | 40.0% | |
| ACGCCGTTTGACACATTTAA+GGG | - | chr6.3:23129906-23129925 | MS.gene74671:intron | 40.0% | |
| ACTTAAGCAATTGTCGTCCA+TGG | - | chr6.3:23129546-23129565 | MS.gene74671:intron | 40.0% | |
| AGAATGTAATCCCATGTCTC+AGG | + | chr6.3:23130018-23130037 | None:intergenic | 40.0% | |
| CGACATTACAACAGAAGACA+TGG | - | chr6.3:23130431-23130450 | MS.gene74671:CDS | 40.0% | |
| CGTCTCATCATTCTCTTTGA+AGG | + | chr6.3:23129011-23129030 | None:intergenic | 40.0% | |
| CTGAATCTCAGGGTCAATTA+TGG | + | chr6.3:23128589-23128608 | None:intergenic | 40.0% | |
| CTGTCACTATAGTCCTTGAA+TGG | - | chr6.3:23129704-23129723 | MS.gene74671:CDS | 40.0% | |
| CTTAAGCAATTGTCGTCCAT+GGG | - | chr6.3:23129547-23129566 | MS.gene74671:intron | 40.0% | |
| GACAGTGCTTAACACATTCA+AGG | + | chr6.3:23129689-23129708 | None:intergenic | 40.0% | |
| GACCAGAGTAAAGAAGATGA+TGG | - | chr6.3:23130688-23130707 | MS.gene74671:intron | 40.0% | |
| TAAGTAAGTGTGTGACCGTT+TGG | - | chr6.3:23129116-23129135 | MS.gene74671:intron | 40.0% | |
| TACAACAGAAGACATGGCTT+TGG | - | chr6.3:23130437-23130456 | MS.gene74671:CDS | 40.0% | |
| TGAGACATGGGATTACATTC+TGG | - | chr6.3:23130017-23130036 | MS.gene74671:intron | 40.0% | |
| TGCCATCATCTTCTTTACTC+TGG | + | chr6.3:23130693-23130712 | None:intergenic | 40.0% | |
| ! | ACGTCTTTTCTTAGTGAGTC+TGG | - | chr6.3:23129754-23129773 | MS.gene74671:intron | 40.0% |
| ! | CATGAAGTGAGACCCTATTT+TGG | + | chr6.3:23129331-23129350 | None:intergenic | 40.0% |
| ! | CTAGTAGTTTGTGCTGGAAA+TGG | - | chr6.3:23129574-23129593 | MS.gene74671:intron | 40.0% |
| !! | CATCAGGTAATGGATGAACT+CGG | - | chr6.3:23130231-23130250 | MS.gene74671:CDS | 40.0% |
| !! | GGGTCCTCCATATTTTTGAT+TGG | - | chr6.3:23128690-23128709 | MS.gene74671:intron | 40.0% |
| !! | GTTTGGGTTGGGATAACTTA+TGG | - | chr6.3:23129133-23129152 | MS.gene74671:CDS | 40.0% |
| AGACTTACTTAGGGCCTGTT+TGG | - | chr6.3:23129064-23129083 | MS.gene74671:intron | 45.0% | |
| ATGTATCCCCTGAGCTGAAA+GGG | - | chr6.3:23128670-23128689 | MS.gene74671:intron | 45.0% | |
| CAATATGGGAAAACTGCTGG+CGG | - | chr6.3:23128817-23128836 | MS.gene74671:CDS | 45.0% | |
| CAGGGTCAATTATGGTTGTG+AGG | + | chr6.3:23128581-23128600 | None:intergenic | 45.0% | |
| GACGCCGTTTGACACATTTA+AGG | - | chr6.3:23129905-23129924 | MS.gene74671:intron | 45.0% | |
| GCCTTTAGACATTGTGGCTA+GGG | - | chr6.3:23130048-23130067 | MS.gene74671:intron | 45.0% | |
| GGATTTATCTCTTGCGGTGA+AGG | - | chr6.3:23128534-23128553 | MS.gene74671:CDS | 45.0% | |
| TCCCTAGCCACAATGTCTAA+AGG | + | chr6.3:23130052-23130071 | None:intergenic | 45.0% | |
| TGCCTTTAGACATTGTGGCT+AGG | - | chr6.3:23130047-23130066 | MS.gene74671:intron | 45.0% | |
| ! | TTTAGGACTTGAGGCCTACA+TGG | + | chr6.3:23130356-23130375 | None:intergenic | 45.0% |
| !! | AACAGAAGACATGGCTTTGG+AGG | - | chr6.3:23130440-23130459 | MS.gene74671:CDS | 45.0% |
| !! | TTGGTGGAAGAAGCATTAGG+TGG | - | chr6.3:23128968-23128987 | MS.gene74671:CDS | 45.0% |
| AAGTGTGTGACCGTTTGGGT+TGG | - | chr6.3:23129121-23129140 | MS.gene74671:intron | 50.0% | |
| ACAAACTACTAGCCGACCCA+TGG | + | chr6.3:23129566-23129585 | None:intergenic | 50.0% | |
| AGCAATTGTCGTCCATGGGT+CGG | - | chr6.3:23129551-23129570 | MS.gene74671:intron | 50.0% | |
| CAGGTAGAGTCACAATACGC+CGG | + | chr6.3:23128760-23128779 | None:intergenic | 50.0% | |
| GACGAGCTTCTATGACTCTG+AGG | - | chr6.3:23129027-23129046 | MS.gene74671:intron | 50.0% | |
| GATGTATCCCCTGAGCTGAA+AGG | - | chr6.3:23128669-23128688 | MS.gene74671:intron | 50.0% | |
| TGCTTCAGGATCTTACCCAG+AGG | - | chr6.3:23130114-23130133 | MS.gene74671:intron | 50.0% | |
| ! | AGTGTGTGACCGTTTGGGTT+GGG | - | chr6.3:23129122-23129141 | MS.gene74671:intron | 50.0% |
| ! | CGCCAGCAGTTTTCCCATAT+TGG | + | chr6.3:23128819-23128838 | None:intergenic | 50.0% |
| ATGGAGGACCCTTTCAGCTC+AGG | + | chr6.3:23128681-23128700 | None:intergenic | 55.0% | |
| TGGAGGACCCTTTCAGCTCA+GGG | + | chr6.3:23128680-23128699 | None:intergenic | 55.0% | |
| ! | ATAGGGCGCTCCTGAGACAT+GGG | - | chr6.3:23130005-23130024 | MS.gene74671:intron | 55.0% |
| ! | GGTCGGCTAGTAGTTTGTGC+TGG | - | chr6.3:23129568-23129587 | MS.gene74671:intron | 55.0% |
| ! | TATAGGGCGCTCCTGAGACA+TGG | - | chr6.3:23130004-23130023 | MS.gene74671:intron | 55.0% |
| GGAGGACCCTTTCAGCTCAG+GGG | + | chr6.3:23128679-23128698 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 23128532 | 23130733 | 23128532 | ID=MS.gene74671 |
| chr6.3 | mRNA | 23128532 | 23130733 | 23128532 | ID=MS.gene74671.t1;Parent=MS.gene74671 |
| chr6.3 | exon | 23130710 | 23130733 | 23130710 | ID=MS.gene74671.t1.exon1;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23130710 | 23130733 | 23130710 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23130554 | 23130608 | 23130554 | ID=MS.gene74671.t1.exon2;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23130554 | 23130608 | 23130554 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23130398 | 23130470 | 23130398 | ID=MS.gene74671.t1.exon3;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23130398 | 23130470 | 23130398 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23130217 | 23130304 | 23130217 | ID=MS.gene74671.t1.exon4;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23130217 | 23130304 | 23130217 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23129645 | 23129727 | 23129645 | ID=MS.gene74671.t1.exon5;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23129645 | 23129727 | 23129645 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23129130 | 23129256 | 23129130 | ID=MS.gene74671.t1.exon6;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23129130 | 23129256 | 23129130 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23128950 | 23129028 | 23128950 | ID=MS.gene74671.t1.exon7;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23128950 | 23129028 | 23128950 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23128804 | 23128868 | 23128804 | ID=MS.gene74671.t1.exon8;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23128804 | 23128868 | 23128804 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| chr6.3 | exon | 23128532 | 23128600 | 23128532 | ID=MS.gene74671.t1.exon9;Parent=MS.gene74671.t1 |
| chr6.3 | CDS | 23128532 | 23128600 | 23128532 | ID=cds.MS.gene74671.t1;Parent=MS.gene74671.t1 |
| Gene Sequence |
| Protein sequence |
