Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76549.t1 | KEH39543.1 | 85.6 | 271 | 35 | 4 | 1 | 270 | 1 | 268 | 7.10E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76549.t1 | Q8LAL2 | 49.8 | 253 | 102 | 4 | 7 | 259 | 28 | 255 | 1.7e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76549.t1 | A0A072VDM5 | 85.6 | 271 | 35 | 4 | 1 | 270 | 1 | 268 | 5.1e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene76549.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene76549 | 0.828938 | 6.81E-55 | -1.69E-46 |
| MS.gene049350 | MS.gene76549 | 0.821497 | 3.91E-53 | -1.69E-46 |
| MS.gene049672 | MS.gene76549 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene76549 | 0.846076 | 2.73E-59 | -1.69E-46 |
| MS.gene049850 | MS.gene76549 | 0.818264 | 2.15E-52 | -1.69E-46 |
| MS.gene05045 | MS.gene76549 | 0.807929 | 3.98E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene76549 | 0.822886 | 1.86E-53 | -1.69E-46 |
| MS.gene050808 | MS.gene76549 | 0.803454 | 3.46E-49 | -1.69E-46 |
| MS.gene051018 | MS.gene76549 | 0.817409 | 3.35E-52 | -1.69E-46 |
| MS.gene051021 | MS.gene76549 | 0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene76549 | 0.825849 | 3.75E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene76549 | 0.854027 | 1.62E-61 | -1.69E-46 |
| MS.gene05150 | MS.gene76549 | 0.801926 | 7.15E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene76549 | 0.839199 | 1.83E-57 | -1.69E-46 |
| MS.gene051664 | MS.gene76549 | 0.815252 | 1.02E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene76549 | 0.849421 | 3.27E-60 | -1.69E-46 |
| MS.gene051720 | MS.gene76549 | 0.873958 | 9.82E-68 | -1.69E-46 |
| MS.gene051744 | MS.gene76549 | 0.805756 | 1.14E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene76549 | 0.813792 | 2.14E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene76549 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene76549 | 0.821964 | 3.05E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene76549 | 0.808844 | 2.54E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene76549 | 0.813537 | 2.43E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene76549 | 0.833567 | 4.95E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene76549 | 0.821857 | 3.23E-53 | -1.69E-46 |
| MS.gene053536 | MS.gene76549 | 0.811869 | 5.64E-51 | -1.69E-46 |
| MS.gene053538 | MS.gene76549 | 0.804655 | 1.95E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene76549 | 0.829761 | 4.30E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene76549 | 0.838583 | 2.64E-57 | -1.69E-46 |
| MS.gene055144 | MS.gene76549 | 0.812027 | 5.21E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene76549 | 0.860019 | 2.77E-63 | -1.69E-46 |
| MS.gene055466 | MS.gene76549 | 0.854455 | 1.22E-61 | -1.69E-46 |
| MS.gene055467 | MS.gene76549 | 0.80571 | 1.17E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene76549 | 0.837689 | 4.48E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene76549 | 0.84485 | 5.85E-59 | -1.69E-46 |
| MS.gene055513 | MS.gene76549 | 0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene055537 | MS.gene76549 | 0.852557 | 4.27E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene76549 | -0.803237 | 3.84E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene76549 | 0.825606 | 4.28E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene76549 | 0.838419 | 2.91E-57 | -1.69E-46 |
| MS.gene057082 | MS.gene76549 | 0.802552 | 5.31E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene76549 | 0.809482 | 1.85E-50 | -1.69E-46 |
| MS.gene058087 | MS.gene76549 | 0.814209 | 1.73E-51 | -1.69E-46 |
| MS.gene058339 | MS.gene76549 | 0.818823 | 1.60E-52 | -1.69E-46 |
| MS.gene058649 | MS.gene76549 | 0.841582 | 4.35E-58 | -1.69E-46 |
| MS.gene058668 | MS.gene76549 | 0.814536 | 1.47E-51 | -1.69E-46 |
| MS.gene05894 | MS.gene76549 | 0.806745 | 7.09E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene76549 | 0.805708 | 1.17E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene76549 | 0.800845 | 1.19E-48 | -1.69E-46 |
| MS.gene060519 | MS.gene76549 | 0.845003 | 5.32E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76549.t1 | MTR_2g100780 | 94.096 | 271 | 12 | 4 | 1 | 270 | 1 | 268 | 1.69e-177 | 489 |
| MS.gene76549.t1 | MTR_2g100780 | 93.893 | 262 | 12 | 4 | 1 | 261 | 1 | 259 | 1.87e-170 | 471 |
| MS.gene76549.t1 | MTR_8g014520 | 54.545 | 275 | 97 | 9 | 6 | 263 | 4 | 267 | 9.22e-82 | 247 |
| MS.gene76549.t1 | MTR_8g014520 | 54.412 | 272 | 96 | 9 | 6 | 260 | 4 | 264 | 2.43e-81 | 246 |
| MS.gene76549.t1 | MTR_6g488150 | 37.959 | 245 | 119 | 8 | 18 | 256 | 21 | 238 | 1.26e-39 | 138 |
| MS.gene76549.t1 | MTR_1g069495 | 41.243 | 177 | 84 | 3 | 96 | 256 | 80 | 252 | 2.20e-38 | 135 |
| MS.gene76549.t1 | MTR_5g030710 | 42.135 | 178 | 81 | 5 | 80 | 256 | 163 | 319 | 1.43e-34 | 127 |
| MS.gene76549.t1 | MTR_8g103030 | 44.937 | 158 | 66 | 3 | 99 | 256 | 141 | 277 | 2.26e-34 | 125 |
| MS.gene76549.t1 | MTR_2g101500 | 43.678 | 174 | 75 | 5 | 86 | 256 | 157 | 310 | 2.97e-34 | 126 |
| MS.gene76549.t1 | MTR_1g070520 | 33.725 | 255 | 135 | 6 | 4 | 256 | 7 | 229 | 4.81e-34 | 124 |
| MS.gene76549.t1 | MTR_8g067530 | 40.741 | 189 | 87 | 6 | 70 | 256 | 175 | 340 | 9.15e-32 | 120 |
| MS.gene76549.t1 | MTR_5g067350 | 42.169 | 166 | 70 | 6 | 94 | 256 | 189 | 331 | 1.97e-31 | 119 |
| MS.gene76549.t1 | MTR_1g080860 | 39.205 | 176 | 83 | 6 | 84 | 256 | 83 | 237 | 5.99e-31 | 115 |
| MS.gene76549.t1 | MTR_1g080860 | 39.205 | 176 | 83 | 6 | 84 | 256 | 83 | 237 | 6.66e-31 | 115 |
| MS.gene76549.t1 | MTR_1g093240 | 35.000 | 200 | 109 | 4 | 57 | 256 | 42 | 220 | 1.13e-29 | 112 |
| MS.gene76549.t1 | MTR_1g093240 | 39.394 | 165 | 79 | 4 | 92 | 256 | 77 | 220 | 1.15e-29 | 112 |
| MS.gene76549.t1 | MTR_1g040675 | 32.787 | 244 | 97 | 7 | 13 | 256 | 2 | 178 | 1.23e-26 | 102 |
| MS.gene76549.t1 | MTR_7g096090 | 37.572 | 173 | 85 | 3 | 84 | 256 | 85 | 234 | 4.80e-26 | 103 |
| MS.gene76549.t1 | MTR_1g076270 | 36.628 | 172 | 60 | 6 | 87 | 256 | 50 | 174 | 2.20e-25 | 99.4 |
| MS.gene76549.t1 | MTR_1g093350 | 36.628 | 172 | 60 | 6 | 87 | 256 | 50 | 174 | 2.20e-25 | 99.4 |
| MS.gene76549.t1 | MTR_1g070830 | 31.405 | 242 | 101 | 9 | 18 | 256 | 18 | 197 | 2.27e-24 | 97.4 |
| MS.gene76549.t1 | MTR_1g093240 | 37.584 | 149 | 72 | 4 | 92 | 240 | 77 | 204 | 4.13e-22 | 91.3 |
| MS.gene76549.t1 | MTR_4g124300 | 40.000 | 105 | 46 | 2 | 150 | 254 | 94 | 181 | 2.18e-20 | 86.3 |
| MS.gene76549.t1 | MTR_7g110790 | 35.606 | 132 | 62 | 5 | 125 | 253 | 44 | 155 | 4.62e-20 | 84.7 |
| MS.gene76549.t1 | MTR_6g488150 | 34.483 | 174 | 83 | 6 | 18 | 185 | 21 | 169 | 6.55e-19 | 82.4 |
| MS.gene76549.t1 | MTR_4g011880 | 31.707 | 164 | 58 | 4 | 99 | 260 | 55 | 166 | 1.06e-18 | 81.6 |
| MS.gene76549.t1 | MTR_1g085750 | 34.014 | 147 | 65 | 6 | 125 | 260 | 49 | 174 | 1.18e-18 | 81.3 |
| MS.gene76549.t1 | MTR_1g040675 | 30.837 | 227 | 90 | 7 | 13 | 239 | 2 | 161 | 3.35e-18 | 79.7 |
| MS.gene76549.t1 | MTR_2g102490 | 39.048 | 105 | 54 | 2 | 152 | 255 | 88 | 183 | 9.85e-18 | 79.3 |
| MS.gene76549.t1 | MTR_4g115075 | 29.299 | 157 | 69 | 4 | 98 | 254 | 92 | 206 | 2.50e-17 | 78.6 |
| MS.gene76549.t1 | MTR_3g106850 | 29.747 | 158 | 74 | 5 | 99 | 256 | 89 | 209 | 4.81e-15 | 72.4 |
| MS.gene76549.t1 | MTR_1g085750 | 31.746 | 126 | 57 | 5 | 125 | 239 | 49 | 156 | 3.78e-12 | 63.2 |
| MS.gene76549.t1 | MTR_5g067350 | 38.947 | 95 | 37 | 3 | 94 | 185 | 189 | 265 | 7.41e-12 | 64.3 |
| MS.gene76549.t1 | MTR_1g109510 | 34.314 | 102 | 49 | 2 | 152 | 253 | 85 | 168 | 5.54e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76549.t1 | AT3G16500 | 55.020 | 249 | 87 | 4 | 11 | 259 | 32 | 255 | 8.02e-82 | 247 |
| MS.gene76549.t1 | AT3G16500 | 55.020 | 249 | 87 | 4 | 11 | 259 | 32 | 255 | 1.34e-81 | 246 |
| MS.gene76549.t1 | AT1G51950 | 49.600 | 250 | 91 | 5 | 12 | 259 | 37 | 253 | 1.02e-70 | 219 |
| MS.gene76549.t1 | AT5G25890 | 37.449 | 243 | 69 | 6 | 13 | 255 | 3 | 162 | 4.45e-38 | 132 |
| MS.gene76549.t1 | AT4G28640 | 43.353 | 173 | 79 | 5 | 92 | 256 | 76 | 237 | 2.22e-36 | 130 |
| MS.gene76549.t1 | AT4G28640 | 43.353 | 173 | 79 | 5 | 92 | 256 | 76 | 237 | 2.53e-36 | 130 |
| MS.gene76549.t1 | AT4G28640 | 41.243 | 177 | 90 | 5 | 83 | 256 | 72 | 237 | 1.41e-35 | 129 |
| MS.gene76549.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 76 | 226 | 2.01e-34 | 125 |
| MS.gene76549.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 76 | 226 | 2.01e-34 | 125 |
| MS.gene76549.t1 | AT2G33310 | 44.379 | 169 | 65 | 6 | 99 | 256 | 77 | 227 | 2.06e-34 | 125 |
| MS.gene76549.t1 | AT1G04550 | 41.398 | 186 | 93 | 7 | 81 | 261 | 50 | 224 | 2.75e-34 | 124 |
| MS.gene76549.t1 | AT4G29080 | 36.330 | 267 | 127 | 13 | 15 | 256 | 41 | 289 | 4.00e-34 | 125 |
| MS.gene76549.t1 | AT1G04100 | 41.358 | 162 | 87 | 4 | 100 | 255 | 95 | 254 | 1.27e-32 | 120 |
| MS.gene76549.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.12e-31 | 118 |
| MS.gene76549.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.12e-31 | 118 |
| MS.gene76549.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.28e-31 | 118 |
| MS.gene76549.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 161 | 303 | 3.28e-31 | 118 |
| MS.gene76549.t1 | AT2G22670 | 41.718 | 163 | 75 | 4 | 94 | 256 | 178 | 320 | 4.62e-31 | 118 |
| MS.gene76549.t1 | AT1G04250 | 34.274 | 248 | 113 | 6 | 15 | 256 | 10 | 213 | 8.65e-31 | 115 |
| MS.gene76549.t1 | AT5G65670 | 37.056 | 197 | 100 | 6 | 61 | 256 | 147 | 320 | 3.46e-30 | 115 |
| MS.gene76549.t1 | AT5G65670 | 37.056 | 197 | 100 | 6 | 61 | 256 | 147 | 320 | 4.15e-30 | 115 |
| MS.gene76549.t1 | AT3G04730 | 34.694 | 245 | 122 | 9 | 18 | 256 | 8 | 220 | 9.59e-30 | 112 |
| MS.gene76549.t1 | AT3G23050 | 38.182 | 165 | 88 | 3 | 92 | 256 | 76 | 226 | 3.90e-28 | 108 |
| MS.gene76549.t1 | AT4G14550 | 35.567 | 194 | 102 | 5 | 77 | 270 | 56 | 226 | 4.69e-28 | 107 |
| MS.gene76549.t1 | AT4G14550 | 38.788 | 165 | 79 | 4 | 92 | 256 | 70 | 212 | 1.37e-27 | 106 |
| MS.gene76549.t1 | AT3G15540 | 31.518 | 257 | 102 | 9 | 8 | 260 | 2 | 188 | 3.51e-27 | 104 |
| MS.gene76549.t1 | AT1G04240 | 30.612 | 196 | 85 | 5 | 71 | 256 | 27 | 181 | 4.33e-25 | 99.0 |
| MS.gene76549.t1 | AT1G04240 | 30.612 | 196 | 85 | 5 | 71 | 256 | 127 | 281 | 4.31e-24 | 98.6 |
| MS.gene76549.t1 | AT5G43700 | 32.022 | 178 | 75 | 4 | 86 | 260 | 47 | 181 | 5.50e-24 | 95.9 |
| MS.gene76549.t1 | AT3G23030 | 34.568 | 162 | 54 | 5 | 99 | 260 | 61 | 170 | 1.37e-21 | 89.4 |
| MS.gene76549.t1 | AT1G52830 | 29.508 | 244 | 100 | 10 | 18 | 260 | 12 | 184 | 5.22e-21 | 88.2 |
| MS.gene76549.t1 | AT3G23030 | 34.568 | 162 | 54 | 5 | 99 | 260 | 148 | 257 | 6.11e-21 | 89.7 |
| MS.gene76549.t1 | AT3G23050 | 36.242 | 149 | 81 | 3 | 92 | 240 | 76 | 210 | 2.07e-20 | 87.0 |
| MS.gene76549.t1 | AT4G14550 | 37.162 | 148 | 71 | 4 | 92 | 239 | 70 | 195 | 5.00e-20 | 85.9 |
| MS.gene76549.t1 | AT3G17600 | 37.736 | 106 | 45 | 2 | 148 | 253 | 70 | 154 | 3.56e-19 | 82.4 |
| MS.gene76549.t1 | AT2G46990 | 38.462 | 104 | 47 | 2 | 151 | 254 | 85 | 171 | 8.77e-19 | 81.6 |
| MS.gene76549.t1 | AT3G62100 | 37.500 | 104 | 48 | 2 | 151 | 254 | 83 | 169 | 1.04e-18 | 81.6 |
| MS.gene76549.t1 | AT4G14560 | 33.526 | 173 | 61 | 5 | 88 | 256 | 41 | 163 | 2.03e-16 | 75.1 |
| MS.gene76549.t1 | AT4G32280 | 25.989 | 177 | 95 | 4 | 99 | 262 | 95 | 248 | 1.24e-14 | 72.0 |
| MS.gene76549.t1 | AT1G04550 | 38.938 | 113 | 64 | 4 | 81 | 188 | 50 | 162 | 4.76e-13 | 66.2 |
| MS.gene76549.t1 | AT3G62100 | 37.079 | 89 | 39 | 2 | 151 | 239 | 83 | 154 | 5.18e-13 | 65.5 |
| MS.gene76549.t1 | AT4G23980 | 34.259 | 108 | 48 | 1 | 154 | 261 | 525 | 609 | 6.59e-13 | 68.9 |
| MS.gene76549.t1 | AT4G23980 | 34.259 | 108 | 48 | 1 | 154 | 261 | 527 | 611 | 7.11e-13 | 68.6 |
| MS.gene76549.t1 | AT2G46990 | 37.079 | 89 | 39 | 2 | 151 | 239 | 85 | 156 | 1.16e-12 | 64.7 |
| MS.gene76549.t1 | AT3G23050 | 35.106 | 94 | 51 | 1 | 92 | 185 | 76 | 159 | 4.89e-12 | 63.2 |
| MS.gene76549.t1 | AT4G32280 | 29.464 | 112 | 56 | 2 | 151 | 262 | 118 | 206 | 6.70e-12 | 63.5 |
| MS.gene76549.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 406 | 487 | 1.70e-11 | 64.3 |
| MS.gene76549.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 493 | 574 | 2.10e-11 | 64.3 |
| MS.gene76549.t1 | AT2G46530 | 31.429 | 105 | 49 | 1 | 153 | 257 | 514 | 595 | 2.70e-11 | 63.9 |
| MS.gene76549.t1 | AT4G14550 | 36.170 | 94 | 42 | 2 | 92 | 185 | 70 | 145 | 4.33e-11 | 60.8 |
Find 50 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGTTGAGTCTGAGATTC+TGG | 0.161798 | 2.3:-3015020 | None:intergenic |
| AACATATATTAATACCTTTA+AGG | 0.163444 | 2.3:-3015217 | None:intergenic |
| GAAAGTGATTACTGGATTAT+TGG | 0.223957 | 2.3:+3015859 | MS.gene76549:CDS |
| CTCTTTAGAGGACTCCTTAA+AGG | 0.227479 | 2.3:+3015203 | MS.gene76549:CDS |
| GGCCACCAATTCGTTCATTC+AGG | 0.331363 | 2.3:+3014958 | MS.gene76549:CDS |
| GACTACAACTATAGTAATAA+AGG | 0.343834 | 2.3:+3015080 | MS.gene76549:CDS |
| GAGGAAGAGAAAGTGATTAC+TGG | 0.355323 | 2.3:+3015851 | MS.gene76549:CDS |
| CTCTACTCTCTTAGGACAAC+AGG | 0.361485 | 2.3:-3013383 | None:intergenic |
| TTCTGTAACTCTACTCTCTT+AGG | 0.365893 | 2.3:-3013391 | None:intergenic |
| TGAGAGTCTTTGTTTGTTGT+TGG | 0.370100 | 2.3:-3013281 | None:intergenic |
| TTACTATAGTTGTAGTCAAT+AGG | 0.388726 | 2.3:-3015074 | None:intergenic |
| AGGAAAGAAAGCTTGAACTA+AGG | 0.413057 | 2.3:+3013221 | MS.gene76549:CDS |
| GCTGTGGATGAGCTCTTTAG+AGG | 0.423705 | 2.3:+3015191 | MS.gene76549:CDS |
| GTCTGAGATTCTGGTTGTGA+TGG | 0.455939 | 2.3:-3015011 | None:intergenic |
| AACAAACAAAGACTCTCATT+TGG | 0.459493 | 2.3:+3013286 | MS.gene76549:CDS |
| TTCTTCCTGAATGAACGAAT+TGG | 0.461192 | 2.3:-3014963 | None:intergenic |
| CACCTGGTGTTGAAGAAGAC+TGG | 0.475839 | 2.3:+3013251 | MS.gene76549:CDS |
| AACATGGATGGTGTTCCAAT+TGG | 0.487413 | 2.3:+3015119 | MS.gene76549:CDS |
| ATGAGGATAATGAAGGAGAC+AGG | 0.490984 | 2.3:+3015909 | MS.gene76549:CDS |
| GGCCAACCCACTACTGGTCC+AGG | 0.495601 | 2.3:-3014939 | None:intergenic |
| ACTGGATTATTGGATGGAAG+TGG | 0.500145 | 2.3:+3015869 | MS.gene76549:CDS |
| ATTGGTGGCCAACCCACTAC+TGG | 0.512048 | 2.3:-3014945 | None:intergenic |
| AATGAAGATGCTTACTGCCA+TGG | 0.519355 | 2.3:-3015950 | None:intergenic |
| CTCCTGGACCAGTAGTGGGT+TGG | 0.519977 | 2.3:+3014937 | MS.gene76549:CDS |
| GTGATTACTGGATTATTGGA+TGG | 0.521970 | 2.3:+3015863 | MS.gene76549:CDS |
| TTCTCTTCAAATTCAAACAA+TGG | 0.522441 | 2.3:+3013316 | MS.gene76549:CDS |
| GAACTAAGGCTTGGTCCACC+TGG | 0.527306 | 2.3:+3013235 | MS.gene76549:CDS |
| CTTGTTACCACCACAAGTAG+AGG | 0.528048 | 2.3:-3015822 | None:intergenic |
| AACAACAACAATGTTGCTGC+TGG | 0.531158 | 2.3:+3015044 | MS.gene76549:CDS |
| AGAGTATACTCTTGTATATG+AGG | 0.532161 | 2.3:+3015892 | MS.gene76549:CDS |
| AACTGCTCCTGGACCAGTAG+TGG | 0.534809 | 2.3:+3014932 | MS.gene76549:CDS |
| TTTCCAACACCTCTCAGAAA+AGG | 0.535342 | 2.3:+3013440 | MS.gene76549:CDS |
| TTCCTGAATGAACGAATTGG+TGG | 0.539764 | 2.3:-3014960 | None:intergenic |
| CTTGTATATGAGGATAATGA+AGG | 0.541105 | 2.3:+3015902 | MS.gene76549:CDS |
| AGAAAGCTTGAACTAAGGCT+TGG | 0.547085 | 2.3:+3013226 | MS.gene76549:CDS |
| ATGAAGATGCTTACTGCCAT+GGG | 0.556758 | 2.3:-3015949 | None:intergenic |
| GAAGGAGACAGGATGCTTGT+TGG | 0.558754 | 2.3:+3015920 | MS.gene76549:CDS |
| TGAAAATCTTTCTTCAGCTG+TGG | 0.566410 | 2.3:+3015175 | MS.gene76549:CDS |
| TGCTTGTTGGTGATGTCCCA+TGG | 0.568099 | 2.3:+3015933 | MS.gene76549:CDS |
| TGTTTGTATCAACAGTGAAG+AGG | 0.599382 | 2.3:+3016576 | MS.gene76549:CDS |
| CAACGAGATTCCTCTACTTG+TGG | 0.602220 | 2.3:+3015812 | MS.gene76549:CDS |
| ACTGCTCCTGGACCAGTAGT+GGG | 0.605389 | 2.3:+3014933 | MS.gene76549:CDS |
| AAGAGAGTAGAGTTACAGAA+TGG | 0.608229 | 2.3:+3013394 | MS.gene76549:CDS |
| CGAGATTCCTCTACTTGTGG+TGG | 0.613069 | 2.3:+3015815 | MS.gene76549:CDS |
| AACCAGTCTTCTTCAACACC+AGG | 0.614487 | 2.3:-3013253 | None:intergenic |
| TTTGTTAAGATCAACATGGA+TGG | 0.616572 | 2.3:+3015107 | MS.gene76549:CDS |
| TGGTGGTAACAAGAAAGAAG+AGG | 0.622799 | 2.3:+3015832 | MS.gene76549:CDS |
| AAATGAGAGAGAATCTTCTG+AGG | 0.628593 | 2.3:+3013201 | MS.gene76549:CDS |
| TTTGTTTGTTAAGATCAACA+TGG | 0.679515 | 2.3:+3015103 | MS.gene76549:CDS |
| CAGTCTTCTTCAACACCAGG+TGG | 0.689120 | 2.3:-3013250 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTAAATAATAATTTTTG+AGG | + | chr2.3:3014664-3014683 | MS.gene76549:intron | 10.0% |
| !!! | AACTAAATAATAATTTTTGA+GGG | + | chr2.3:3014665-3014684 | MS.gene76549:intron | 10.0% |
| !!! | TAATATATGTACTTTAAAAA+TGG | - | chr2.3:3015747-3015766 | None:intergenic | 10.0% |
| !! | AAAACTTTAGATATAGAAAA+AGG | - | chr2.3:3013473-3013492 | None:intergenic | 15.0% |
| !! | AACATATATTAATACCTTTA+AGG | - | chr2.3:3015220-3015239 | None:intergenic | 15.0% |
| !! | AATAAAAATTCAAAGCAATA+TGG | - | chr2.3:3015722-3015741 | None:intergenic | 15.0% |
| !! | ACTATGATTGAATTTAAAAA+AGG | - | chr2.3:3015249-3015268 | None:intergenic | 15.0% |
| !! | ATATTTACAATATGTTAGTT+AGG | - | chr2.3:3014717-3014736 | None:intergenic | 15.0% |
| !! | CAAAAACTTAAAATAAAAAG+TGG | + | chr2.3:3014624-3014643 | MS.gene76549:intron | 15.0% |
| !! | CATTTCGTATATATAATATA+TGG | + | chr2.3:3015315-3015334 | MS.gene76549:intron | 15.0% |
| !! | CTATGATTGAATTTAAAAAA+GGG | - | chr2.3:3015248-3015267 | None:intergenic | 15.0% |
| !! | GAAAAAATATACTATAAAGA+AGG | - | chr2.3:3013874-3013893 | None:intergenic | 15.0% |
| !! | TAACATATTGTAAATATGTA+GGG | + | chr2.3:3014720-3014739 | MS.gene76549:intron | 15.0% |
| !! | TGTACTTATATATATCATTT+GGG | + | chr2.3:3014053-3014072 | MS.gene76549:intron | 15.0% |
| !! | TTATAAAACTCTTTAACTAT+TGG | - | chr2.3:3015400-3015419 | None:intergenic | 15.0% |
| !! | TTGTACTTATATATATCATT+TGG | + | chr2.3:3014052-3014071 | MS.gene76549:intron | 15.0% |
| !!! | AAATAAAAGTTTACTTTTAC+AGG | - | chr2.3:3014372-3014391 | None:intergenic | 15.0% |
| !!! | AATAAAAGTTTACTTTTACA+GGG | - | chr2.3:3014371-3014390 | None:intergenic | 15.0% |
| !!! | ATTTTTTTAATGTATGTGTT+TGG | + | chr2.3:3016548-3016567 | MS.gene76549:intron | 15.0% |
| !!! | GTTATAATTCACATTTTAAA+GGG | - | chr2.3:3014227-3014246 | None:intergenic | 15.0% |
| !!! | TAAGCAAAAAATAACTTTTT+AGG | + | chr2.3:3016170-3016189 | MS.gene76549:intron | 15.0% |
| !!! | TAATTAATAATGGAAAAACA+TGG | - | chr2.3:3013652-3013671 | None:intergenic | 15.0% |
| !!! | TATTAGTTTTAATTTTTCCT+TGG | + | chr2.3:3013952-3013971 | MS.gene76549:intron | 15.0% |
| !!! | TTATAGTATATTTTTTCCTT+GGG | + | chr2.3:3013877-3013896 | MS.gene76549:intron | 15.0% |
| !!! | TTATTTTTATTTTAAGACAG+AGG | + | chr2.3:3013493-3013512 | MS.gene76549:intron | 15.0% |
| !!! | TTTATAGTATATTTTTTCCT+TGG | + | chr2.3:3013876-3013895 | MS.gene76549:intron | 15.0% |
| !! | AAATTCAACATTAATGCTTA+AGG | + | chr2.3:3015644-3015663 | MS.gene76549:intron | 20.0% |
| !! | AACACAATTGTATATTTGTA+AGG | - | chr2.3:3014400-3014419 | None:intergenic | 20.0% |
| !! | AAGTACAAAAAAGTTCAATT+GGG | + | chr2.3:3015519-3015538 | MS.gene76549:intron | 20.0% |
| !! | AATAAAGATCTCATTAGAAT+TGG | - | chr2.3:3014549-3014568 | None:intergenic | 20.0% |
| !! | CTAACATATTGTAAATATGT+AGG | + | chr2.3:3014719-3014738 | MS.gene76549:intron | 20.0% |
| !! | TAATTGTATTATTGCTAAGA+GGG | - | chr2.3:3016424-3016443 | None:intergenic | 20.0% |
| !! | TACAAATATACAATTGTGTT+TGG | + | chr2.3:3014400-3014419 | MS.gene76549:intron | 20.0% |
| !! | TAGTGTGATTTAATTATTGT+TGG | + | chr2.3:3016481-3016500 | MS.gene76549:intron | 20.0% |
| !! | TATTGTTGGAAAACTATTAT+TGG | + | chr2.3:3016495-3016514 | MS.gene76549:intron | 20.0% |
| !! | TTAATTGTATTATTGCTAAG+AGG | - | chr2.3:3016425-3016444 | None:intergenic | 20.0% |
| !!! | GCATTAGAATAAAATTTGTT+TGG | - | chr2.3:3015683-3015702 | None:intergenic | 20.0% |
| !!! | GGTTATAATTCACATTTTAA+AGG | - | chr2.3:3014228-3014247 | None:intergenic | 20.0% |
| !!! | TATAGTATATTTTTTCCTTG+GGG | + | chr2.3:3013878-3013897 | MS.gene76549:intron | 20.0% |
| !!! | TTTTTGCTTATAAATATGAC+CGG | + | chr2.3:3016269-3016288 | MS.gene76549:intron | 20.0% |
| ! | AACACTTGTCATAAATAATG+TGG | - | chr2.3:3016331-3016350 | None:intergenic | 25.0% |
| ! | AATTGTATTATTGCTAAGAG+GGG | - | chr2.3:3016423-3016442 | None:intergenic | 25.0% |
| ! | AGGCATGTAGTAATTAATAA+TGG | - | chr2.3:3013662-3013681 | None:intergenic | 25.0% |
| ! | ATCATGCTTAACTTTGTAAA+TGG | + | chr2.3:3014891-3014910 | MS.gene76549:intron | 25.0% |
| ! | ATGTACTATAGCATAAGATT+AGG | - | chr2.3:3015985-3016004 | None:intergenic | 25.0% |
| ! | CAAAAATAGTTACTAGTACA+TGG | - | chr2.3:3013772-3013791 | None:intergenic | 25.0% |
| ! | GAAGTACAAAAAAGTTCAAT+TGG | + | chr2.3:3015518-3015537 | MS.gene76549:intron | 25.0% |
| ! | GACTACAACTATAGTAATAA+AGG | + | chr2.3:3015080-3015099 | MS.gene76549:CDS | 25.0% |
| ! | GATCCCTCAATATAAAATAA+GGG | - | chr2.3:3014497-3014516 | None:intergenic | 25.0% |
| ! | TAAAAAGTGGTATATTTGCT+TGG | + | chr2.3:3014637-3014656 | MS.gene76549:intron | 25.0% |
| ! | TACATGCCTTATATAAACAT+TGG | + | chr2.3:3013673-3013692 | MS.gene76549:intron | 25.0% |
| ! | TGATCCCTCAATATAAAATA+AGG | - | chr2.3:3014498-3014517 | None:intergenic | 25.0% |
| ! | TTACTATAGTTGTAGTCAAT+AGG | - | chr2.3:3015077-3015096 | None:intergenic | 25.0% |
| ! | TTCTCTTCAAATTCAAACAA+TGG | + | chr2.3:3013316-3013335 | MS.gene76549:CDS | 25.0% |
| ! | TTTGTGCCAATGTTTATATA+AGG | - | chr2.3:3013682-3013701 | None:intergenic | 25.0% |
| !! | ATGTATCTAGTTTATAAACG+TGG | - | chr2.3:3016221-3016240 | None:intergenic | 25.0% |
| !! | ATTTTTGTCGAATAATCTAG+TGG | - | chr2.3:3014249-3014268 | None:intergenic | 25.0% |
| !! | CTCTGGTTATGAATTTTAAA+TGG | - | chr2.3:3014295-3014314 | None:intergenic | 25.0% |
| !! | TAAAATTCTTATAGAGTGTC+CGG | - | chr2.3:3014097-3014116 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTAAGATCAACA+TGG | + | chr2.3:3015103-3015122 | MS.gene76549:CDS | 25.0% |
| !! | TTTTTGCTTATAAATGTGAC+CGG | - | chr2.3:3016160-3016179 | None:intergenic | 25.0% |
| !!! | AAGCCCTTATTTTATATTGA+GGG | + | chr2.3:3014491-3014510 | MS.gene76549:intron | 25.0% |
| !!! | ACATTTTAAAGGGAATAAGT+GGG | - | chr2.3:3014217-3014236 | None:intergenic | 25.0% |
| !!! | TAAGCCCTTATTTTATATTG+AGG | + | chr2.3:3014490-3014509 | MS.gene76549:intron | 25.0% |
| AACAAACAAAGACTCTCATT+TGG | + | chr2.3:3013286-3013305 | MS.gene76549:CDS | 30.0% | |
| AGAGTATACTCTTGTATATG+AGG | + | chr2.3:3015892-3015911 | MS.gene76549:CDS | 30.0% | |
| AGTAGTAATTATGAAGCACA+AGG | - | chr2.3:3016133-3016152 | None:intergenic | 30.0% | |
| ATATTAACAAATACTCCCTC+CGG | - | chr2.3:3016291-3016310 | None:intergenic | 30.0% | |
| ATTAAATCACACTAGTTAGC+AGG | - | chr2.3:3016475-3016494 | None:intergenic | 30.0% | |
| ATTCAATCATAGTACTCATG+TGG | + | chr2.3:3015256-3015275 | MS.gene76549:intron | 30.0% | |
| ATTTGAAGGGTTATGCTAAT+AGG | + | chr2.3:3014778-3014797 | MS.gene76549:intron | 30.0% | |
| CAACCACACACAAAATATAT+TGG | + | chr2.3:3013716-3013735 | MS.gene76549:intron | 30.0% | |
| CTTGTATATGAGGATAATGA+AGG | + | chr2.3:3015902-3015921 | MS.gene76549:CDS | 30.0% | |
| GAAAGTGATTACTGGATTAT+TGG | + | chr2.3:3015859-3015878 | MS.gene76549:CDS | 30.0% | |
| GACAAATTCAGATATTCACA+TGG | - | chr2.3:3013920-3013939 | None:intergenic | 30.0% | |
| GGCACATAATAAATAACAGA+TGG | - | chr2.3:3013853-3013872 | None:intergenic | 30.0% | |
| GTAGCAAAAACTCAAGATAT+GGG | - | chr2.3:3014341-3014360 | None:intergenic | 30.0% | |
| GTTGGAAAACTATTATTGGT+AGG | + | chr2.3:3016499-3016518 | MS.gene76549:intron | 30.0% | |
| TAAACAGTGAAACTTGTAGT+AGG | - | chr2.3:3014869-3014888 | None:intergenic | 30.0% | |
| TGTAGGGTTACTATTTGATT+TGG | + | chr2.3:3014736-3014755 | MS.gene76549:intron | 30.0% | |
| TTTGTTAAGATCAACATGGA+TGG | + | chr2.3:3015107-3015126 | MS.gene76549:CDS | 30.0% | |
| ! | AAAACCATGCTTTTACTAGT+AGG | - | chr2.3:3015576-3015595 | None:intergenic | 30.0% |
| ! | AAACCATGCTTTTACTAGTA+GGG | - | chr2.3:3015575-3015594 | None:intergenic | 30.0% |
| ! | AGATCAACTTTTCTACCAAT+TGG | - | chr2.3:3015137-3015156 | None:intergenic | 30.0% |
| ! | ATATATTTTGTGTGTGGTTG+AGG | - | chr2.3:3013716-3013735 | None:intergenic | 30.0% |
| ! | TTGCCAATATATTTTGTGTG+TGG | - | chr2.3:3013722-3013741 | None:intergenic | 30.0% |
| !! | ATTTGATTTGGATGAGTGAT+TGG | + | chr2.3:3014748-3014767 | MS.gene76549:intron | 30.0% |
| !! | CACATTTTAAAGGGAATAAG+TGG | - | chr2.3:3014218-3014237 | None:intergenic | 30.0% |
| !! | TTTACTTTTACAGGGACTAA+AGG | - | chr2.3:3014363-3014382 | None:intergenic | 30.0% |
| !! | TTTCTTTCATTTTGAGAGAG+AGG | + | chr2.3:3015544-3015563 | MS.gene76549:intron | 30.0% |
| !!! | ATACCCATTTTTTAATGACG+AGG | - | chr2.3:3013980-3013999 | None:intergenic | 30.0% |
| !!! | TACCCATTTTTTAATGACGA+GGG | - | chr2.3:3013979-3013998 | None:intergenic | 30.0% |
| !!! | TGTTTTTTCTCCTACTATTG+TGG | + | chr2.3:3013538-3013557 | MS.gene76549:intron | 30.0% |
| AAATGAGAGAGAATCTTCTG+AGG | + | chr2.3:3013201-3013220 | MS.gene76549:CDS | 35.0% | |
| AAGAGAGTAGAGTTACAGAA+TGG | + | chr2.3:3013394-3013413 | MS.gene76549:CDS | 35.0% | |
| AGACATCTCTGAATCAAACA+TGG | - | chr2.3:3013814-3013833 | None:intergenic | 35.0% | |
| AGGAAAGAAAGCTTGAACTA+AGG | + | chr2.3:3013221-3013240 | MS.gene76549:CDS | 35.0% | |
| ATCATTTGGGTATATTGCTC+AGG | + | chr2.3:3014066-3014085 | MS.gene76549:intron | 35.0% | |
| GGTAGCAAAAACTCAAGATA+TGG | - | chr2.3:3014342-3014361 | None:intergenic | 35.0% | |
| GTCCCTCGTCATTAAAAAAT+GGG | + | chr2.3:3013974-3013993 | MS.gene76549:intron | 35.0% | |
| GTGATTACTGGATTATTGGA+TGG | + | chr2.3:3015863-3015882 | MS.gene76549:CDS | 35.0% | |
| TAAAAACATTGACCACACGA+CGG | - | chr2.3:3015283-3015302 | None:intergenic | 35.0% | |
| TGAAAATCTTTCTTCAGCTG+TGG | + | chr2.3:3015175-3015194 | MS.gene76549:CDS | 35.0% | |
| TGCTTATAAATATGACCGGA+GGG | + | chr2.3:3016273-3016292 | MS.gene76549:intron | 35.0% | |
| TGTTTGTATCAACAGTGAAG+AGG | + | chr2.3:3016576-3016595 | MS.gene76549:CDS | 35.0% | |
| TTCATAATTACTACTCCCTC+CGG | + | chr2.3:3016138-3016157 | MS.gene76549:intron | 35.0% | |
| TTCATCAACGTGTTTCGATA+CGG | + | chr2.3:3015362-3015381 | MS.gene76549:intron | 35.0% | |
| TTCTGTAACTCTACTCTCTT+AGG | - | chr2.3:3013394-3013413 | None:intergenic | 35.0% | |
| TTCTTCCTGAATGAACGAAT+TGG | - | chr2.3:3014966-3014985 | None:intergenic | 35.0% | |
| TTGCTTATAAATATGACCGG+AGG | + | chr2.3:3016272-3016291 | MS.gene76549:intron | 35.0% | |
| TTGGATGAGTGATTGGATTT+GGG | + | chr2.3:3014755-3014774 | MS.gene76549:intron | 35.0% | |
| TTTGGATGAGTGATTGGATT+TGG | + | chr2.3:3014754-3014773 | MS.gene76549:intron | 35.0% | |
| ! | AATGGTTTTCAACATGTGAG+AGG | + | chr2.3:3013334-3013353 | MS.gene76549:CDS | 35.0% |
| ! | GATTGGATTTGGGATTTGAA+GGG | + | chr2.3:3014765-3014784 | MS.gene76549:intron | 35.0% |
| ! | TGATTGGATTTGGGATTTGA+AGG | + | chr2.3:3014764-3014783 | MS.gene76549:intron | 35.0% |
| !! | TGAGAGTCTTTGTTTGTTGT+TGG | - | chr2.3:3013284-3013303 | None:intergenic | 35.0% |
| !!! | AGCAGTTCTGTTTTTTTGGT+GGG | - | chr2.3:3014919-3014938 | None:intergenic | 35.0% |
| !!! | GTATATTTTTTCCTTGGGGT+TGG | + | chr2.3:3013882-3013901 | MS.gene76549:intron | 35.0% |
| AAATCACACTAGTTAGCAGG+AGG | - | chr2.3:3016472-3016491 | None:intergenic | 40.0% | |
| AAATTCATAACCAGAGCTCG+AGG | + | chr2.3:3014299-3014318 | MS.gene76549:intron | 40.0% | |
| AACAACAACAATGTTGCTGC+TGG | + | chr2.3:3015044-3015063 | MS.gene76549:CDS | 40.0% | |
| AACATGGATGGTGTTCCAAT+TGG | + | chr2.3:3015119-3015138 | MS.gene76549:CDS | 40.0% | |
| AAGGGAATAAGTGGGTGATT+AGG | - | chr2.3:3014209-3014228 | None:intergenic | 40.0% | |
| AATGAAGATGCTTACTGCCA+TGG | - | chr2.3:3015953-3015972 | None:intergenic | 40.0% | |
| ACTGGATTATTGGATGGAAG+TGG | + | chr2.3:3015869-3015888 | MS.gene76549:CDS | 40.0% | |
| AGAAAGCTTGAACTAAGGCT+TGG | + | chr2.3:3013226-3013245 | MS.gene76549:CDS | 40.0% | |
| AGGGAATAAGTGGGTGATTA+GGG | - | chr2.3:3014208-3014227 | None:intergenic | 40.0% | |
| ATGAAGATGCTTACTGCCAT+GGG | - | chr2.3:3015952-3015971 | None:intergenic | 40.0% | |
| ATGAGGATAATGAAGGAGAC+AGG | + | chr2.3:3015909-3015928 | MS.gene76549:CDS | 40.0% | |
| CAAAAAAACAGAACTGCTCC+TGG | + | chr2.3:3014921-3014940 | MS.gene76549:intron | 40.0% | |
| GAAACAGAACAGAACTTGCA+TGG | - | chr2.3:3013565-3013584 | None:intergenic | 40.0% | |
| GAATCAAACATGGCTAGGAA+AGG | - | chr2.3:3013804-3013823 | None:intergenic | 40.0% | |
| GAGGAAGAGAAAGTGATTAC+TGG | + | chr2.3:3015851-3015870 | MS.gene76549:CDS | 40.0% | |
| GGTCCCTCGTCATTAAAAAA+TGG | + | chr2.3:3013973-3013992 | MS.gene76549:intron | 40.0% | |
| GTACCCTACTAGTAAAAGCA+TGG | + | chr2.3:3015569-3015588 | MS.gene76549:intron | 40.0% | |
| GTTTCGATACGGCTAGTATT+TGG | + | chr2.3:3015373-3015392 | MS.gene76549:intron | 40.0% | |
| TCTCTGAATCAAACATGGCT+AGG | - | chr2.3:3013809-3013828 | None:intergenic | 40.0% | |
| TGCTTATAAATGTGACCGGA+GGG | - | chr2.3:3016156-3016175 | None:intergenic | 40.0% | |
| TGGTGGTAACAAGAAAGAAG+AGG | + | chr2.3:3015832-3015851 | MS.gene76549:CDS | 40.0% | |
| TTCCTGAATGAACGAATTGG+TGG | - | chr2.3:3014963-3014982 | None:intergenic | 40.0% | |
| TTGCTTATAAATGTGACCGG+AGG | - | chr2.3:3016157-3016176 | None:intergenic | 40.0% | |
| TTTCCAACACCTCTCAGAAA+AGG | + | chr2.3:3013440-3013459 | MS.gene76549:CDS | 40.0% | |
| ! | CTCTTTAGAGGACTCCTTAA+AGG | + | chr2.3:3015203-3015222 | MS.gene76549:CDS | 40.0% |
| ! | GGTATAGTACCTTTTCTGAG+AGG | - | chr2.3:3013452-3013471 | None:intergenic | 40.0% |
| ! | TTTTTAATGACGAGGGACCA+AGG | - | chr2.3:3013972-3013991 | None:intergenic | 40.0% |
| !! | CTTTCATTTTGAGAGAGAGG+TGG | + | chr2.3:3015547-3015566 | MS.gene76549:intron | 40.0% |
| !! | GTATATTGCTCAGGAGTATC+CGG | + | chr2.3:3014075-3014094 | MS.gene76549:intron | 40.0% |
| !! | TAGGGTTAGTTATGATCACG+AGG | - | chr2.3:3014190-3014209 | None:intergenic | 40.0% |
| !!! | CAGGAGCAGTTCTGTTTTTT+TGG | - | chr2.3:3014923-3014942 | None:intergenic | 40.0% |
| !!! | GAGCAGTTCTGTTTTTTTGG+TGG | - | chr2.3:3014920-3014939 | None:intergenic | 40.0% |
| !!! | GCAGTTCTGTTTTTTTGGTG+GGG | - | chr2.3:3014918-3014937 | None:intergenic | 40.0% |
| AACCAGTCTTCTTCAACACC+AGG | - | chr2.3:3013256-3013275 | None:intergenic | 45.0% | |
| ACCAGCTGTATGCTTCAGAT+TGG | + | chr2.3:3015613-3015632 | MS.gene76549:intron | 45.0% | |
| AGTATGTCAAACCAACCCCA+AGG | - | chr2.3:3013896-3013915 | None:intergenic | 45.0% | |
| ATCTGTAGCACTACATGCCA+TGG | + | chr2.3:3016359-3016378 | MS.gene76549:intron | 45.0% | |
| CAAAATGCCACATCGAGTGA+TGG | - | chr2.3:3016075-3016094 | None:intergenic | 45.0% | |
| CAACGAGATTCCTCTACTTG+TGG | + | chr2.3:3015812-3015831 | MS.gene76549:CDS | 45.0% | |
| CTCTACTCTCTTAGGACAAC+AGG | - | chr2.3:3013386-3013405 | None:intergenic | 45.0% | |
| CTTGCATGGACCACAATAGT+AGG | - | chr2.3:3013551-3013570 | None:intergenic | 45.0% | |
| CTTGTTACCACCACAAGTAG+AGG | - | chr2.3:3015825-3015844 | None:intergenic | 45.0% | |
| TCCAATTCCATCACTCGATG+TGG | + | chr2.3:3016065-3016084 | MS.gene76549:intron | 45.0% | |
| TGTGACAAACAGACATGCCA+TGG | - | chr2.3:3016379-3016398 | None:intergenic | 45.0% | |
| TTATTGCTAAGAGGGGACAG+TGG | - | chr2.3:3016416-3016435 | None:intergenic | 45.0% | |
| ! | ACCAATCTGAAGCATACAGC+TGG | - | chr2.3:3015617-3015636 | None:intergenic | 45.0% |
| ! | GTCTGAGATTCTGGTTGTGA+TGG | - | chr2.3:3015014-3015033 | None:intergenic | 45.0% |
| ! | TGCTGTTGAGTCTGAGATTC+TGG | - | chr2.3:3015023-3015042 | None:intergenic | 45.0% |
| !! | CTGCTTTTACACGTGAGTCA+TGG | + | chr2.3:3016627-3016646 | MS.gene76549:CDS | 45.0% |
| !! | GTACCTTTTCTGAGAGGTGT+TGG | - | chr2.3:3013446-3013465 | None:intergenic | 45.0% |
| !! | TGTTAATATTATTTAATTAA+AGG | + | chr2.3:3016302-3016321 | MS.gene76549:intron | 5.0% |
| !!! | TTGTTTTTTAATAAATTTTT+TGG | + | chr2.3:3014015-3014034 | MS.gene76549:intron | 5.0% |
| CAGTCTTCTTCAACACCAGG+TGG | - | chr2.3:3013253-3013272 | None:intergenic | 50.0% | |
| CGAGATTCCTCTACTTGTGG+TGG | + | chr2.3:3015815-3015834 | MS.gene76549:CDS | 50.0% | |
| GAAGGAGACAGGATGCTTGT+TGG | + | chr2.3:3015920-3015939 | MS.gene76549:CDS | 50.0% | |
| GCTGTGGATGAGCTCTTTAG+AGG | + | chr2.3:3015191-3015210 | MS.gene76549:CDS | 50.0% | |
| GGCCACCAATTCGTTCATTC+AGG | + | chr2.3:3014958-3014977 | MS.gene76549:CDS | 50.0% | |
| TAATTACCGTCCTCGAGCTC+TGG | - | chr2.3:3014312-3014331 | None:intergenic | 50.0% | |
| TCATAACCAGAGCTCGAGGA+CGG | + | chr2.3:3014303-3014322 | MS.gene76549:intron | 50.0% | |
| ! | CACCTGGTGTTGAAGAAGAC+TGG | + | chr2.3:3013251-3013270 | MS.gene76549:CDS | 50.0% |
| ! | GCCACATCGAGTGATGGAAT+TGG | - | chr2.3:3016069-3016088 | None:intergenic | 50.0% |
| !! | TGCTTGTTGGTGATGTCCCA+TGG | + | chr2.3:3015933-3015952 | MS.gene76549:CDS | 50.0% |
| AACTGCTCCTGGACCAGTAG+TGG | + | chr2.3:3014932-3014951 | MS.gene76549:CDS | 55.0% | |
| ACTGCTCCTGGACCAGTAGT+GGG | + | chr2.3:3014933-3014952 | MS.gene76549:CDS | 55.0% | |
| TACTCATGTGGACCGTCGTG+TGG | + | chr2.3:3015268-3015287 | MS.gene76549:intron | 55.0% | |
| ! | ATTGGTGGCCAACCCACTAC+TGG | - | chr2.3:3014948-3014967 | None:intergenic | 55.0% |
| ! | GAACTAAGGCTTGGTCCACC+TGG | + | chr2.3:3013235-3013254 | MS.gene76549:CDS | 55.0% |
| !! | CTCCTGGACCAGTAGTGGGT+TGG | + | chr2.3:3014937-3014956 | MS.gene76549:CDS | 60.0% |
| GGCCAACCCACTACTGGTCC+AGG | - | chr2.3:3014942-3014961 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 3013184 | 3016667 | 3013184 | ID=MS.gene76549 |
| chr2.3 | mRNA | 3013184 | 3016667 | 3013184 | ID=MS.gene76549.t1;Parent=MS.gene76549 |
| chr2.3 | exon | 3013184 | 3013461 | 3013184 | ID=MS.gene76549.t1.exon1;Parent=MS.gene76549.t1 |
| chr2.3 | CDS | 3013184 | 3013461 | 3013184 | ID=cds.MS.gene76549.t1;Parent=MS.gene76549.t1 |
| chr2.3 | exon | 3014932 | 3015224 | 3014932 | ID=MS.gene76549.t1.exon2;Parent=MS.gene76549.t1 |
| chr2.3 | CDS | 3014932 | 3015224 | 3014932 | ID=cds.MS.gene76549.t1;Parent=MS.gene76549.t1 |
| chr2.3 | exon | 3015810 | 3015957 | 3015810 | ID=MS.gene76549.t1.exon3;Parent=MS.gene76549.t1 |
| chr2.3 | CDS | 3015810 | 3015957 | 3015810 | ID=cds.MS.gene76549.t1;Parent=MS.gene76549.t1 |
| chr2.3 | exon | 3016574 | 3016667 | 3016574 | ID=MS.gene76549.t1.exon4;Parent=MS.gene76549.t1 |
| chr2.3 | CDS | 3016574 | 3016667 | 3016574 | ID=cds.MS.gene76549.t1;Parent=MS.gene76549.t1 |
| Gene Sequence |
| Protein sequence |
