Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76774.t1 | XP_013442744.1 | 96 | 201 | 8 | 0 | 1 | 201 | 1 | 201 | 3.30E-100 | 374.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76774.t1 | C6TG62 | 69.7 | 195 | 58 | 1 | 1 | 195 | 1 | 194 | 1.2e-71 | 270.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76774.t1 | A0A072TGS8 | 96.0 | 201 | 8 | 0 | 1 | 201 | 1 | 201 | 2.4e-100 | 374.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene76774 | 0.814265 | 1.68E-51 | -1.69E-46 |
| MS.gene050082 | MS.gene76774 | 0.909132 | 7.99E-82 | -1.69E-46 |
| MS.gene050323 | MS.gene76774 | -0.803181 | 3.94E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene76774 | -0.807467 | 4.98E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene76774 | 0.814445 | 1.54E-51 | -1.69E-46 |
| MS.gene050496 | MS.gene76774 | -0.805183 | 1.51E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene76774 | -0.805292 | 1.43E-49 | -1.69E-46 |
| MS.gene05104 | MS.gene76774 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene76774 | 0.808661 | 2.78E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene76774 | 0.845338 | 4.32E-59 | -1.69E-46 |
| MS.gene051364 | MS.gene76774 | 0.832279 | 1.03E-55 | -1.69E-46 |
| MS.gene051366 | MS.gene76774 | 0.824149 | 9.44E-54 | -1.69E-46 |
| MS.gene051367 | MS.gene76774 | 0.822465 | 2.34E-53 | -1.69E-46 |
| MS.gene051422 | MS.gene76774 | 0.832137 | 1.12E-55 | -1.69E-46 |
| MS.gene051651 | MS.gene76774 | 0.847109 | 1.42E-59 | -1.69E-46 |
| MS.gene053420 | MS.gene76774 | 0.85922 | 4.81E-63 | -1.69E-46 |
| MS.gene055154 | MS.gene76774 | 0.809067 | 2.27E-50 | -1.69E-46 |
| MS.gene055202 | MS.gene76774 | 0.830544 | 2.77E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene76774 | -0.809974 | 1.45E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene76774 | -0.822364 | 2.46E-53 | -1.69E-46 |
| MS.gene056856 | MS.gene76774 | 0.852112 | 5.71E-61 | -1.69E-46 |
| MS.gene057549 | MS.gene76774 | 0.812473 | 4.17E-51 | -1.69E-46 |
| MS.gene057768 | MS.gene76774 | 0.825134 | 5.53E-54 | -1.69E-46 |
| MS.gene058067 | MS.gene76774 | 0.820192 | 7.81E-53 | -1.69E-46 |
| MS.gene058068 | MS.gene76774 | 0.864999 | 8.12E-65 | -1.69E-46 |
| MS.gene058099 | MS.gene76774 | 0.830128 | 3.50E-55 | -1.69E-46 |
| MS.gene058111 | MS.gene76774 | 0.83421 | 3.42E-56 | -1.69E-46 |
| MS.gene058171 | MS.gene76774 | 0.83037 | 3.05E-55 | -1.69E-46 |
| MS.gene058173 | MS.gene76774 | 0.824428 | 8.11E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene76774 | 0.833004 | 6.84E-56 | -1.69E-46 |
| MS.gene058268 | MS.gene76774 | 0.833904 | 4.08E-56 | -1.69E-46 |
| MS.gene058269 | MS.gene76774 | 0.827519 | 1.50E-54 | -1.69E-46 |
| MS.gene058603 | MS.gene76774 | 0.811262 | 7.65E-51 | -1.69E-46 |
| MS.gene059069 | MS.gene76774 | 0.803372 | 3.60E-49 | -1.69E-46 |
| MS.gene059070 | MS.gene76774 | 0.812414 | 4.29E-51 | -1.69E-46 |
| MS.gene059865 | MS.gene76774 | -0.817222 | 3.69E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene76774 | 0.814873 | 1.23E-51 | -1.69E-46 |
| MS.gene060823 | MS.gene76774 | 0.808112 | 3.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76774.t1 | MTR_0097s0070 | 96.020 | 201 | 8 | 0 | 1 | 201 | 1 | 201 | 1.85e-142 | 395 |
| MS.gene76774.t1 | MTR_8g089300 | 73.196 | 194 | 51 | 1 | 1 | 194 | 1 | 193 | 2.77e-94 | 273 |
| MS.gene76774.t1 | MTR_4g118810 | 36.986 | 146 | 86 | 3 | 29 | 171 | 35 | 177 | 4.65e-22 | 89.4 |
| MS.gene76774.t1 | MTR_7g108130 | 31.609 | 174 | 112 | 3 | 17 | 189 | 18 | 185 | 7.52e-21 | 85.9 |
| MS.gene76774.t1 | MTR_0004s0210 | 32.927 | 164 | 94 | 2 | 29 | 192 | 10 | 157 | 1.03e-20 | 84.7 |
| MS.gene76774.t1 | MTR_2g020060 | 28.659 | 164 | 106 | 3 | 31 | 189 | 27 | 184 | 5.62e-15 | 70.5 |
| MS.gene76774.t1 | MTR_7g011090 | 27.957 | 186 | 121 | 3 | 6 | 188 | 10 | 185 | 1.07e-13 | 67.0 |
| MS.gene76774.t1 | MTR_4g081880 | 30.189 | 159 | 96 | 4 | 31 | 185 | 33 | 180 | 4.97e-12 | 62.4 |
| MS.gene76774.t1 | MTR_5g041900 | 30.323 | 155 | 101 | 1 | 31 | 185 | 32 | 179 | 1.73e-11 | 60.8 |
| MS.gene76774.t1 | MTR_1g058540 | 33.562 | 146 | 84 | 4 | 31 | 173 | 42 | 177 | 7.86e-11 | 59.3 |
| MS.gene76774.t1 | MTR_2g086740 | 29.268 | 123 | 71 | 2 | 71 | 185 | 99 | 213 | 8.21e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76774.t1 | AT5G44550 | 58.721 | 172 | 71 | 0 | 23 | 194 | 14 | 185 | 1.85e-66 | 202 |
| MS.gene76774.t1 | AT4G20390 | 55.882 | 170 | 74 | 1 | 22 | 190 | 12 | 181 | 5.07e-54 | 171 |
| MS.gene76774.t1 | AT4G15620 | 29.570 | 186 | 124 | 4 | 5 | 189 | 10 | 189 | 2.22e-18 | 79.3 |
| MS.gene76774.t1 | AT1G03700 | 28.659 | 164 | 101 | 3 | 29 | 192 | 11 | 158 | 8.07e-18 | 77.4 |
| MS.gene76774.t1 | AT4G15630 | 28.022 | 182 | 125 | 3 | 9 | 189 | 13 | 189 | 1.22e-17 | 77.4 |
| MS.gene76774.t1 | AT4G15610 | 30.556 | 144 | 93 | 3 | 31 | 172 | 33 | 171 | 5.54e-16 | 73.2 |
| MS.gene76774.t1 | AT1G14160 | 29.032 | 155 | 103 | 1 | 31 | 185 | 55 | 202 | 6.80e-16 | 73.2 |
| MS.gene76774.t1 | AT5G15290 | 30.769 | 143 | 90 | 3 | 31 | 172 | 32 | 166 | 3.75e-15 | 70.9 |
| MS.gene76774.t1 | AT3G06390 | 30.827 | 133 | 84 | 3 | 32 | 161 | 42 | 169 | 8.76e-14 | 67.4 |
| MS.gene76774.t1 | AT4G03540 | 29.008 | 131 | 77 | 3 | 44 | 174 | 26 | 140 | 4.39e-13 | 64.7 |
Find 42 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGGAGTTTGATTAAATT+TGG | 0.215698 | 2.4:-43415739 | None:intergenic |
| GCAGAAAGAGTAGCAGTTAT+TGG | 0.256041 | 2.4:-43415717 | None:intergenic |
| GCCCTTATTGCTTCTTTCAT+TGG | 0.266507 | 2.4:+43416597 | MS.gene76774:CDS |
| AAGTCCTTTGTAATCATATT+GGG | 0.274380 | 2.4:-43416299 | None:intergenic |
| ATGATTGCATTGGATATATT+AGG | 0.293339 | 2.4:+43416274 | MS.gene76774:CDS |
| CAGAAAGAGTAGCAGTTATT+GGG | 0.306576 | 2.4:-43415716 | None:intergenic |
| TACAAAATGGCTTCAAGAAA+TGG | 0.318606 | 2.4:+43415522 | None:intergenic |
| GAAGTCCTTTGTAATCATAT+TGG | 0.328703 | 2.4:-43416300 | None:intergenic |
| AGCCAATGAAAGAAGCAATA+AGG | 0.340360 | 2.4:-43416599 | None:intergenic |
| GGTGCCAATAACAAAACTTT+TGG | 0.346894 | 2.4:-43415682 | None:intergenic |
| TTTGAAAGCTATTGCAATAG+AGG | 0.418883 | 2.4:+43416567 | MS.gene76774:CDS |
| ATGTCAGCATTGGGAAGAAA+TGG | 0.423404 | 2.4:+43416507 | MS.gene76774:CDS |
| TTGAAAACTTACACAAAAGC+TGG | 0.437745 | 2.4:-43415756 | None:intergenic |
| GCCAATGAAAGAAGCAATAA+GGG | 0.438011 | 2.4:-43416598 | None:intergenic |
| ATGCAATCATCACCAAGTTA+TGG | 0.467360 | 2.4:-43416261 | None:intergenic |
| GGAGCATGGTTAATGCGATT+AGG | 0.484616 | 2.4:-43416672 | None:intergenic |
| AGCAACATTCATGTCAGCAT+TGG | 0.488005 | 2.4:+43416497 | MS.gene76774:CDS |
| ACTATGGCTCTGGCATCAGC+TGG | 0.494373 | 2.4:+43416465 | MS.gene76774:CDS |
| GCGATTAGGCTTGAGAAGCT+TGG | 0.494528 | 2.4:-43416658 | None:intergenic |
| GCAACATTCATGTCAGCATT+GGG | 0.495269 | 2.4:+43416498 | MS.gene76774:CDS |
| AAATGCTAGTCTCCATAACT+TGG | 0.496794 | 2.4:+43416249 | MS.gene76774:CDS |
| GGTGAAGTTAACTATGGCTC+TGG | 0.500555 | 2.4:+43416455 | MS.gene76774:intron |
| TGCAGCTGCAACACTTGTAA+TGG | 0.510923 | 2.4:+43415644 | MS.gene76774:CDS |
| ATGTTAATCATATCAAGGAC+TGG | 0.510976 | 2.4:-43416694 | None:intergenic |
| TGGTAATTCACATGCAAGAT+GGG | 0.512674 | 2.4:+43416527 | MS.gene76774:CDS |
| ATGGTAATTCACATGCAAGA+TGG | 0.522902 | 2.4:+43416526 | MS.gene76774:CDS |
| ATGGAGACTAGCATTTCCAT+TGG | 0.523367 | 2.4:-43416242 | None:intergenic |
| AGGTTCTTTGTGATAGCCAA+TGG | 0.526185 | 2.4:+43416226 | MS.gene76774:intron |
| AGCTATTGCAATAGAGGTGG+TGG | 0.537163 | 2.4:+43416573 | MS.gene76774:CDS |
| GCTCTGGCATCAGCTGGAGA+TGG | 0.540036 | 2.4:+43416471 | MS.gene76774:CDS |
| TAACTTGGTGATGATTGCAT+TGG | 0.550469 | 2.4:+43416264 | MS.gene76774:CDS |
| CATATCAAGGACTGGGAGCA+TGG | 0.559515 | 2.4:-43416686 | None:intergenic |
| TGTTAATCATATCAAGGACT+GGG | 0.560345 | 2.4:-43416693 | None:intergenic |
| AGGCTTGAGAAGCTTGGCAA+TGG | 0.561801 | 2.4:-43416652 | None:intergenic |
| TACAAGTGTTGCAGCTGCAG+TGG | 0.571483 | 2.4:-43415640 | None:intergenic |
| CTAAAATTGCAATAAATGCA+AGG | 0.578209 | 2.4:-43416324 | None:intergenic |
| GAAAGCTATTGCAATAGAGG+TGG | 0.619990 | 2.4:+43416570 | MS.gene76774:CDS |
| AGTTATTGGGGTGTTACCAA+CGG | 0.622547 | 2.4:-43415703 | None:intergenic |
| AGTCCTTTGTAATCATATTG+GGG | 0.628572 | 2.4:-43416298 | None:intergenic |
| AGAAAGAGTAGCAGTTATTG+GGG | 0.633112 | 2.4:-43415715 | None:intergenic |
| GGACCCCAATATGATTACAA+AGG | 0.645480 | 2.4:+43416295 | MS.gene76774:CDS |
| GGTGAAGAGAAAGTTGAACG+TGG | 0.756724 | 2.4:+43415543 | MS.gene76774:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATACATTTATATTAACAT+GGG | + | chr2.4:43416196-43416215 | MS.gene76774:intron | 10.0% |
| !! | TTTATACATTTATATTAACA+TGG | + | chr2.4:43416195-43416214 | MS.gene76774:intron | 10.0% |
| !!! | AAGTTTTTTAATTTTTTCTT+AGG | + | chr2.4:43416386-43416405 | MS.gene76774:intron | 10.0% |
| !! | TATACATTTATATTAACATG+GGG | + | chr2.4:43416197-43416216 | MS.gene76774:intron | 15.0% |
| !! | AAAGAAAAACAAAGAATGAT+TGG | + | chr2.4:43415583-43415602 | MS.gene76774:CDS | 20.0% |
| !!! | AAACCAAAAAAGTTTTATGT+AGG | + | chr2.4:43415965-43415984 | MS.gene76774:intron | 20.0% |
| !!! | ATTTATTGCAATTTTAGACA+TGG | + | chr2.4:43416330-43416349 | MS.gene76774:CDS | 20.0% |
| ! | AAGTCCTTTGTAATCATATT+GGG | - | chr2.4:43416302-43416321 | None:intergenic | 25.0% |
| ! | AATTTCATCGCTTAATTCAA+AGG | + | chr2.4:43416092-43416111 | MS.gene76774:intron | 25.0% |
| ! | ATGATTGCATTGGATATATT+AGG | + | chr2.4:43416274-43416293 | MS.gene76774:CDS | 25.0% |
| ! | CTAAAATTGCAATAAATGCA+AGG | - | chr2.4:43416327-43416346 | None:intergenic | 25.0% |
| !! | ATTGGATTCTTTTATCTCTT+CGG | + | chr2.4:43415601-43415620 | MS.gene76774:CDS | 25.0% |
| ACGATTGAGAAAATAGAGAA+AGG | + | chr2.4:43416048-43416067 | MS.gene76774:intron | 30.0% | |
| AGCTGGAGTTTGATTAAATT+TGG | - | chr2.4:43415742-43415761 | None:intergenic | 30.0% | |
| AGTCCTTTGTAATCATATTG+GGG | - | chr2.4:43416301-43416320 | None:intergenic | 30.0% | |
| GAAGTCCTTTGTAATCATAT+TGG | - | chr2.4:43416303-43416322 | None:intergenic | 30.0% | |
| TTGAAAACTTACACAAAAGC+TGG | - | chr2.4:43415759-43415778 | None:intergenic | 30.0% | |
| TTTGAAAGCTATTGCAATAG+AGG | + | chr2.4:43416567-43416586 | MS.gene76774:CDS | 30.0% | |
| ! | TTGGATTCTTTTATCTCTTC+GGG | + | chr2.4:43415602-43415621 | MS.gene76774:CDS | 30.0% |
| !! | CCAAAAAAGTTTTATGTAGG+AGG | + | chr2.4:43415968-43415987 | MS.gene76774:intron | 30.0% |
| !!! | CAGACCAAAAGTTTTGTTAT+TGG | + | chr2.4:43415678-43415697 | MS.gene76774:CDS | 30.0% |
| !!! | CCTCCTACATAAAACTTTTT+TGG | - | chr2.4:43415971-43415990 | None:intergenic | 30.0% |
| !!! | TTTTTGGGTGAAGTTAACTA+TGG | + | chr2.4:43416449-43416468 | MS.gene76774:intron | 30.0% |
| AGAAAGAGTAGCAGTTATTG+GGG | - | chr2.4:43415718-43415737 | None:intergenic | 35.0% | |
| AGCCAATGAAAGAAGCAATA+AGG | - | chr2.4:43416602-43416621 | None:intergenic | 35.0% | |
| ATACCATTGTACTACTCGTT+CGG | - | chr2.4:43415937-43415956 | None:intergenic | 35.0% | |
| ATATTAACATGGGGTGATAC+AGG | + | chr2.4:43416206-43416225 | MS.gene76774:intron | 35.0% | |
| ATGCAATCATCACCAAGTTA+TGG | - | chr2.4:43416264-43416283 | None:intergenic | 35.0% | |
| ATGGTAATTCACATGCAAGA+TGG | + | chr2.4:43416526-43416545 | MS.gene76774:CDS | 35.0% | |
| CAGAAAGAGTAGCAGTTATT+GGG | - | chr2.4:43415719-43415738 | None:intergenic | 35.0% | |
| GCCAATGAAAGAAGCAATAA+GGG | - | chr2.4:43416601-43416620 | None:intergenic | 35.0% | |
| TAGTAGAAGAGGTCGAATAT+CGG | - | chr2.4:43415995-43416014 | None:intergenic | 35.0% | |
| TGGTAATTCACATGCAAGAT+GGG | + | chr2.4:43416527-43416546 | MS.gene76774:CDS | 35.0% | |
| ! | AAATGCTAGTCTCCATAACT+TGG | + | chr2.4:43416249-43416268 | MS.gene76774:CDS | 35.0% |
| ! | CTCTATTTTCTCAATCGTAG+TGG | - | chr2.4:43416046-43416065 | None:intergenic | 35.0% |
| ! | GGTGCCAATAACAAAACTTT+TGG | - | chr2.4:43415685-43415704 | None:intergenic | 35.0% |
| !! | ATCGTAGTGGTTAATTTGTC+AGG | - | chr2.4:43416033-43416052 | None:intergenic | 35.0% |
| !! | TAACTTGGTGATGATTGCAT+TGG | + | chr2.4:43416264-43416283 | MS.gene76774:CDS | 35.0% |
| !! | TCGTAGTGGTTAATTTGTCA+GGG | - | chr2.4:43416032-43416051 | None:intergenic | 35.0% |
| AGCAACATTCATGTCAGCAT+TGG | + | chr2.4:43416497-43416516 | MS.gene76774:CDS | 40.0% | |
| AGGTTCTTTGTGATAGCCAA+TGG | + | chr2.4:43416226-43416245 | MS.gene76774:intron | 40.0% | |
| ATGGAGACTAGCATTTCCAT+TGG | - | chr2.4:43416245-43416264 | None:intergenic | 40.0% | |
| GAAAGCTATTGCAATAGAGG+TGG | + | chr2.4:43416570-43416589 | MS.gene76774:CDS | 40.0% | |
| GAGGGAAATGTTAGTAGAAG+AGG | - | chr2.4:43416006-43416025 | None:intergenic | 40.0% | |
| GCAACATTCATGTCAGCATT+GGG | + | chr2.4:43416498-43416517 | MS.gene76774:CDS | 40.0% | |
| GCAGAAAGAGTAGCAGTTAT+TGG | - | chr2.4:43415720-43415739 | None:intergenic | 40.0% | |
| GCCCTTATTGCTTCTTTCAT+TGG | + | chr2.4:43416597-43416616 | MS.gene76774:CDS | 40.0% | |
| GGACCCCAATATGATTACAA+AGG | + | chr2.4:43416295-43416314 | MS.gene76774:CDS | 40.0% | |
| TACCATTGTACTACTCGTTC+GGG | - | chr2.4:43415936-43415955 | None:intergenic | 40.0% | |
| ! | AGTTATTGGGGTGTTACCAA+CGG | - | chr2.4:43415706-43415725 | None:intergenic | 40.0% |
| ! | ATGTCAGCATTGGGAAGAAA+TGG | + | chr2.4:43416507-43416526 | MS.gene76774:CDS | 40.0% |
| ! | GATTCTTTTATCTCTTCGGG+TGG | + | chr2.4:43415605-43415624 | MS.gene76774:CDS | 40.0% |
| !! | GTTAATTTGTCAGGGAGAGA+GGG | - | chr2.4:43416024-43416043 | None:intergenic | 40.0% |
| !!! | AGTTTTGTTATTGGCACCGT+TGG | + | chr2.4:43415687-43415706 | MS.gene76774:CDS | 40.0% |
| ACCATTGTACTACTCGTTCG+GGG | - | chr2.4:43415935-43415954 | None:intergenic | 45.0% | |
| AGCTATTGCAATAGAGGTGG+TGG | + | chr2.4:43416573-43416592 | MS.gene76774:CDS | 45.0% | |
| GGAGCATGGTTAATGCGATT+AGG | - | chr2.4:43416675-43416694 | None:intergenic | 45.0% | |
| GGTGAAGAGAAAGTTGAACG+TGG | + | chr2.4:43415543-43415562 | MS.gene76774:CDS | 45.0% | |
| GGTGAAGTTAACTATGGCTC+TGG | + | chr2.4:43416455-43416474 | MS.gene76774:intron | 45.0% | |
| TGCAGCTGCAACACTTGTAA+TGG | + | chr2.4:43415644-43415663 | MS.gene76774:CDS | 45.0% | |
| !! | GGTTAATTTGTCAGGGAGAG+AGG | - | chr2.4:43416025-43416044 | None:intergenic | 45.0% |
| !! | ATCTATAATAAAATTAAAAT+AGG | - | chr2.4:43416174-43416193 | None:intergenic | 5.0% |
| !!! | ATTGATAAATAATATTTTTT+TGG | + | chr2.4:43416433-43416452 | MS.gene76774:intron | 5.0% |
| !!! | TTGATAAATAATATTTTTTT+GGG | + | chr2.4:43416434-43416453 | MS.gene76774:intron | 5.0% |
| AGGCTTGAGAAGCTTGGCAA+TGG | - | chr2.4:43416655-43416674 | None:intergenic | 50.0% | |
| GCGATTAGGCTTGAGAAGCT+TGG | - | chr2.4:43416661-43416680 | None:intergenic | 50.0% | |
| TCCCCGAACGAGTAGTACAA+TGG | + | chr2.4:43415931-43415950 | MS.gene76774:intron | 50.0% | |
| ! | TACAAGTGTTGCAGCTGCAG+TGG | - | chr2.4:43415643-43415662 | None:intergenic | 50.0% |
| !! | ACTATGGCTCTGGCATCAGC+TGG | + | chr2.4:43416465-43416484 | MS.gene76774:CDS | 55.0% |
| GCTCTGGCATCAGCTGGAGA+TGG | + | chr2.4:43416471-43416490 | MS.gene76774:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 43415528 | 43416704 | 43415528 | ID=MS.gene76774 |
| chr2.4 | mRNA | 43415528 | 43416704 | 43415528 | ID=MS.gene76774.t1;Parent=MS.gene76774 |
| chr2.4 | exon | 43415528 | 43415766 | 43415528 | ID=MS.gene76774.t1.exon1;Parent=MS.gene76774.t1 |
| chr2.4 | CDS | 43415528 | 43415766 | 43415528 | ID=cds.MS.gene76774.t1;Parent=MS.gene76774.t1 |
| chr2.4 | exon | 43416228 | 43416351 | 43416228 | ID=MS.gene76774.t1.exon2;Parent=MS.gene76774.t1 |
| chr2.4 | CDS | 43416228 | 43416351 | 43416228 | ID=cds.MS.gene76774.t1;Parent=MS.gene76774.t1 |
| chr2.4 | exon | 43416462 | 43416704 | 43416462 | ID=MS.gene76774.t1.exon3;Parent=MS.gene76774.t1 |
| chr2.4 | CDS | 43416462 | 43416704 | 43416462 | ID=cds.MS.gene76774.t1;Parent=MS.gene76774.t1 |
| Gene Sequence |
| Protein sequence |
