AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77345


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77345.t1 MTR_7g068450 87.549 257 31 1 1 256 1 257 1.27e-169 468
MS.gene77345.t1 MTR_7g068460 68.775 253 75 2 1 253 32 280 8.88e-127 361
MS.gene77345.t1 MTR_7g068470 67.589 253 77 3 1 253 1 248 6.98e-124 352
MS.gene77345.t1 MTR_7g068470 67.194 253 74 4 1 253 1 244 6.16e-122 347
MS.gene77345.t1 MTR_7g068500 65.873 252 82 2 2 253 32 279 1.80e-121 347
MS.gene77345.t1 MTR_7g068530 61.382 246 90 3 2 247 6 246 3.06e-111 320
MS.gene77345.t1 MTR_4g016510 58.039 255 103 2 1 254 5 256 3.26e-107 311
MS.gene77345.t1 MTR_7g068550 60.000 250 95 3 1 249 5 250 1.67e-106 308
MS.gene77345.t1 MTR_3g070460 52.362 254 117 2 2 254 6 256 1.70e-98 288
MS.gene77345.t1 MTR_7g068520 39.130 253 53 3 1 253 2 153 2.69e-53 170
MS.gene77345.t1 MTR_2g015510 34.468 235 149 3 2 232 5 238 7.62e-44 149
MS.gene77345.t1 MTR_2g015500 34.025 241 145 4 2 234 4 238 4.69e-41 141
MS.gene77345.t1 MTR_4g016500 37.500 224 67 4 31 254 277 427 2.53e-38 139
MS.gene77345.t1 MTR_4g105680 29.358 218 141 4 33 244 61 271 4.16e-26 103
MS.gene77345.t1 MTR_2g015480 31.959 194 109 7 21 207 76 253 1.25e-19 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77345.t1 AT3G11210 51.575 254 119 2 2 254 6 256 4.01e-96 282
MS.gene77345.t1 AT2G38180 55.417 240 95 4 1 238 5 234 1.68e-89 268
MS.gene77345.t1 AT5G45920 37.238 239 140 3 1 233 2 236 3.66e-48 159
MS.gene77345.t1 AT5G45920 37.238 239 140 3 1 233 2 236 3.66e-48 159
MS.gene77345.t1 AT5G62930 33.750 240 146 5 1 234 1 233 3.99e-43 147
MS.gene77345.t1 AT5G62930 33.610 241 145 4 1 234 27 259 8.69e-43 147
MS.gene77345.t1 AT5G45920 39.153 189 106 2 1 183 2 187 4.89e-41 140
MS.gene77345.t1 AT5G45920 39.153 189 106 2 1 183 2 187 4.89e-41 140
MS.gene77345.t1 AT5G62930 29.885 174 110 3 68 234 7 175 1.46e-22 91.7

Find 64 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAATCCAGTGATGAATT+TGG 0.267380 7.2:+35348457 MS.gene77345:intron
ATGACAATGCCAGTTGAATT+TGG 0.268207 7.2:+35348815 MS.gene77345:CDS
GAACCAAACAACACAAATTT+AGG 0.285170 7.2:-35345675 None:intergenic
ATGAATTTGGGAAAGCAATA+AGG 0.331975 7.2:+35348470 MS.gene77345:CDS
CAATCATTATGGTGAAGGTT+GGG 0.369849 7.2:+35345713 MS.gene77345:CDS
GTCATGTGGGAATGGAATAT+TGG 0.373506 7.2:-35348894 None:intergenic
CTTCCACATCCAAGTGGTCT+TGG 0.377231 7.2:+35347697 MS.gene77345:CDS
TTCTATTTGCTCGTCACTGA+TGG 0.384722 7.2:-35348128 None:intergenic
ATTGTTCAATACAATCATTA+TGG 0.393001 7.2:+35345702 MS.gene77345:CDS
ACTGGAAACCAAGTCTATAT+TGG 0.393142 7.2:+35348792 MS.gene77345:CDS
AGGCCTAAATTTGTGTTGTT+TGG 0.393187 7.2:+35345672 MS.gene77345:CDS
CATTCCCACATGACGAGGAT+TGG 0.411555 7.2:+35348903 MS.gene77345:CDS
TAATTCAGAGAAGAGAAGAT+TGG 0.424630 7.2:+35348578 MS.gene77345:CDS
ATTCCCACATGACGAGGATT+GGG 0.425826 7.2:+35348904 MS.gene77345:CDS
ATCAGTGACGAGCAAATAGA+AGG 0.431393 7.2:+35348130 MS.gene77345:CDS
GAATCTTCTCCAAATTCAAC+TGG 0.437465 7.2:-35348824 None:intergenic
TGGTTGCTCTTGTTGCTCAA+TGG 0.444287 7.2:-35347635 None:intergenic
ATGAATCCAGTGATGAATTT+GGG 0.445366 7.2:+35348458 MS.gene77345:intron
TTAATAGTTGATGTTCCATC+AGG 0.449862 7.2:-35348866 None:intergenic
TGGTCCTCATGTTCCATTGG+AGG 0.451423 7.2:+35347717 MS.gene77345:CDS
TCTTGGTCCTCATGTTCCAT+TGG 0.469377 7.2:+35347714 MS.gene77345:CDS
GGAGTTCATTTCTCTGCTGA+GGG 0.470947 7.2:+35348722 MS.gene77345:CDS
TCAGGATGAAGTGGATCATA+TGG 0.473741 7.2:-35348848 None:intergenic
CTCTGCTGAGGGGAGTGAAA+TGG 0.488755 7.2:+35348733 MS.gene77345:CDS
ACAATCATTATGGTGAAGGT+TGG 0.489722 7.2:+35345712 MS.gene77345:CDS
GATACGCTGGTTGGAATTCA+AGG 0.490553 7.2:+35347236 MS.gene77345:CDS
AAATCAAGGCCATTGATTTG+TGG 0.494052 7.2:+35348551 MS.gene77345:CDS
CAATCCTCGTCATGTGGGAA+TGG 0.494781 7.2:-35348902 None:intergenic
TTTACAGATGTGTGATGCTA+TGG 0.499622 7.2:+35348528 MS.gene77345:CDS
AGGAATATAAGTCGAGTCTT+CGG 0.500287 7.2:-35348094 None:intergenic
TGGAGTTCATTTCTCTGCTG+AGG 0.503530 7.2:+35348721 MS.gene77345:CDS
CACTCCCAATCCTCGTCATG+TGG 0.505983 7.2:-35348908 None:intergenic
GGTGTCAAAGGAAATAATTA+AGG 0.512022 7.2:+35348754 MS.gene77345:CDS
TTAGCGATTGTGTACTTTGG+TGG 0.513174 7.2:+35347661 MS.gene77345:CDS
CAATACAATCATTATGGTGA+AGG 0.519514 7.2:+35345708 MS.gene77345:CDS
GCTACTCTTGCTCACTTGTA+CGG 0.520179 7.2:+35345738 MS.gene77345:CDS
GAACATTGCTAATTATCTAA+AGG 0.520550 7.2:+35347759 MS.gene77345:CDS
TGCTCACTTGTACGGTCGTA+AGG 0.520953 7.2:+35345746 MS.gene77345:CDS
TCTATTTGCTCGTCACTGAT+GGG 0.521323 7.2:-35348127 None:intergenic
AATCATTATGGTGAAGGTTG+GGG 0.521403 7.2:+35345714 MS.gene77345:CDS
GCATTAGCGATTGTGTACTT+TGG 0.523965 7.2:+35347658 MS.gene77345:CDS
AATTAAAGACCACAAATCAA+TGG 0.527394 7.2:-35348560 None:intergenic
AGGAATACATAGAAAATATG+AGG 0.540166 7.2:+35347737 MS.gene77345:CDS
ACATGAGGACCAAGACCACT+TGG 0.540240 7.2:-35347706 None:intergenic
AGGTCATCAAAGAAGCAGAC+TGG 0.550907 7.2:+35348774 MS.gene77345:CDS
TATGATCCACTTCATCCTGA+TGG 0.553655 7.2:+35348851 MS.gene77345:CDS
AAGGCGTGGTCTACAAGTTG+TGG 0.554579 7.2:+35347255 MS.gene77345:CDS
GATGTTCCATCAGGATGAAG+TGG 0.557009 7.2:-35348857 None:intergenic
GGACCAAGACCACTTGGATG+TGG 0.561284 7.2:-35347700 None:intergenic
ATTGTCATCCAATATAGACT+TGG 0.570102 7.2:-35348800 None:intergenic
GTGTGATGCTATGGAAATCA+AGG 0.573097 7.2:+35348537 MS.gene77345:CDS
AAGTACACAATCGCTAATGC+TGG 0.582708 7.2:-35347655 None:intergenic
GGGGAGTGAAATGGTGTCAA+AGG 0.585018 7.2:+35348742 MS.gene77345:CDS
CACATGACGAGGATTGGGAG+TGG 0.610871 7.2:+35348909 MS.gene77345:CDS
ATAATGATTGTATTGAACAA+TGG 0.612955 7.2:-35345700 None:intergenic
ACATGACGAGGATTGGGAGT+GGG 0.614997 7.2:+35348910 MS.gene77345:CDS
ACTCCCAATCCTCGTCATGT+GGG 0.618376 7.2:-35348907 None:intergenic
ATTTGCTCGTCACTGATGGG+AGG 0.620352 7.2:-35348124 None:intergenic
TATTCCTCCAATGGAACATG+AGG 0.621940 7.2:-35347721 None:intergenic
TATTCCATTCCCACATGACG+AGG 0.621980 7.2:+35348898 MS.gene77345:CDS
GAGTTCATTTCTCTGCTGAG+GGG 0.625207 7.2:+35348723 MS.gene77345:CDS
TCTCATCTTCCACATCCAAG+TGG 0.677695 7.2:+35347691 MS.gene77345:CDS
GCTGGTTGGAATTCAAGGCG+TGG 0.697276 7.2:+35347241 MS.gene77345:CDS
CACTGATGGGAGGACAACTG+AGG 0.703954 7.2:-35348114 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTTAAATAATTAAA+AGG + chr7.2:35346600-35346619 MS.gene77345:intron 0.0%
!! AAATATTTAAATAATTAAAA+GGG + chr7.2:35346601-35346620 MS.gene77345:intron 0.0%
!! AATTATAACACTAATATAAA+TGG - chr7.2:35346106-35346125 None:intergenic 10.0%
!! ACTAAGTAAAAATAATAATT+TGG - chr7.2:35346462-35346481 None:intergenic 10.0%
!! TTATATAATACATAAAAGTT+AGG - chr7.2:35348425-35348444 None:intergenic 10.0%
!! ATTTCAATCATTTAATTAAG+TGG + chr7.2:35348679-35348698 MS.gene77345:intron 15.0%
!! TTAGGAATTAAAAATCTAAT+AGG - chr7.2:35348407-35348426 None:intergenic 15.0%
!!! AATAAGATTTTGTTAAAGTA+AGG - chr7.2:35346695-35346714 None:intergenic 15.0%
!!! AGATATACAATAATTTTATG+TGG - chr7.2:35347957-35347976 None:intergenic 15.0%
!!! ATTTTTTTTACCTCAAATAT+TGG + chr7.2:35347847-35347866 MS.gene77345:intron 15.0%
!! AAAAAAGTGAAATTAAGCTT+AGG - chr7.2:35347374-35347393 None:intergenic 20.0%
!! AAAAAGTGAAATTAAGCTTA+GGG - chr7.2:35347373-35347392 None:intergenic 20.0%
!! AACTTATCATTATTTGATGT+AGG + chr7.2:35347195-35347214 MS.gene77345:intron 20.0%
!! AATCATTTAATTAAGTGGTT+TGG + chr7.2:35348684-35348703 MS.gene77345:intron 20.0%
!! ATAATGATTGTATTGAACAA+TGG - chr7.2:35345703-35345722 None:intergenic 20.0%
!! ATTGTTCAATACAATCATTA+TGG + chr7.2:35345702-35345721 MS.gene77345:CDS 20.0%
!! TCTTAATTGTCATTATCATA+TGG + chr7.2:35347815-35347834 MS.gene77345:intron 20.0%
!!! AAAGTACTTATTAAAAGAGA+TGG - chr7.2:35345805-35345824 None:intergenic 20.0%
!!! ACAATAATTTTATGTGGTTT+CGG - chr7.2:35347951-35347970 None:intergenic 20.0%
!!! ATGATAATGACAATTAAGAT+AGG - chr7.2:35347814-35347833 None:intergenic 20.0%
!!! CTTTTTCAACTACAATAATT+TGG + chr7.2:35347915-35347934 MS.gene77345:intron 20.0%
!!! GAAGATTATATTGATTTACA+TGG + chr7.2:35347476-35347495 MS.gene77345:intron 20.0%
!!! TATCTCAATTTTTTAGTCAA+TGG + chr7.2:35347433-35347452 MS.gene77345:intron 20.0%
!!! TCATTTTTAGGTACATAAAT+GGG + chr7.2:35346832-35346851 MS.gene77345:intron 20.0%
! AAAAATAGCAAACCAATTGT+AGG - chr7.2:35348168-35348187 None:intergenic 25.0%
! AAAAATGAGTATCTCTATTG+TGG - chr7.2:35346820-35346839 None:intergenic 25.0%
! AACAAAACTTATCAAAGTCT+AGG - chr7.2:35348354-35348373 None:intergenic 25.0%
! AAGAAATTTGTATGAGATCT+GGG - chr7.2:35346928-35346947 None:intergenic 25.0%
! AATTAAAGACCACAAATCAA+TGG - chr7.2:35348563-35348582 None:intergenic 25.0%
! ACACACAATTATGAGATATT+GGG - chr7.2:35345931-35345950 None:intergenic 25.0%
! AGGAATACATAGAAAATATG+AGG + chr7.2:35347737-35347756 MS.gene77345:CDS 25.0%
! AGTCTTAAACATATAAGACT+TGG - chr7.2:35347116-35347135 None:intergenic 25.0%
! CACAATTTATTATTTCGTCA+AGG + chr7.2:35346624-35346643 MS.gene77345:intron 25.0%
! GAACATTGCTAATTATCTAA+AGG + chr7.2:35347759-35347778 MS.gene77345:CDS 25.0%
! GAATTTATCTGTCAATCATT+AGG - chr7.2:35348073-35348092 None:intergenic 25.0%
! TAAGAAATTTGTATGAGATC+TGG - chr7.2:35346929-35346948 None:intergenic 25.0%
! TATAATGATCTTGCTGAATA+AGG + chr7.2:35347511-35347530 MS.gene77345:intron 25.0%
!! AAGTCTAGGTATACTATTTT+AGG - chr7.2:35348340-35348359 None:intergenic 25.0%
!! AGTTATTGATAGTTGATTAG+TGG - chr7.2:35346960-35346979 None:intergenic 25.0%
!! TAACATCACCCTAATAATTT+TGG - chr7.2:35346276-35346295 None:intergenic 25.0%
!!! AGGGTAAAATATTATTTCTG+AGG - chr7.2:35347354-35347373 None:intergenic 25.0%
!!! ATATTATTTCTGAGGAAAGA+AGG - chr7.2:35347346-35347365 None:intergenic 25.0%
!!! ATTTAATTAAGTGGTTTGGT+TGG + chr7.2:35348688-35348707 MS.gene77345:intron 25.0%
!!! CAATAGAGATACTCATTTTT+AGG + chr7.2:35346820-35346839 MS.gene77345:intron 25.0%
!!! CTCATTTTTAGGTACATAAA+TGG + chr7.2:35346831-35346850 MS.gene77345:intron 25.0%
AATCGGATATTCAATACCTT+AGG - chr7.2:35347292-35347311 None:intergenic 30.0%
AATGAATCCAGTGATGAATT+TGG + chr7.2:35348457-35348476 MS.gene77345:intron 30.0%
ACATGTTAAGGAATCCAAAA+TGG + chr7.2:35346313-35346332 MS.gene77345:intron 30.0%
AGTAGACACTAAAGAATACA+AGG - chr7.2:35346184-35346203 None:intergenic 30.0%
ATCCCTAAAAAAATTGCACA+TGG - chr7.2:35347413-35347432 None:intergenic 30.0%
ATGAATCCAGTGATGAATTT+GGG + chr7.2:35348458-35348477 MS.gene77345:intron 30.0%
ATGAATTTGGGAAAGCAATA+AGG + chr7.2:35348470-35348489 MS.gene77345:CDS 30.0%
ATTGTCATCCAATATAGACT+TGG - chr7.2:35348803-35348822 None:intergenic 30.0%
CAACATGTAATACCTACAAT+TGG + chr7.2:35348153-35348172 MS.gene77345:intron 30.0%
CAATACAATCATTATGGTGA+AGG + chr7.2:35345708-35345727 MS.gene77345:CDS 30.0%
CACACACAATTATGAGATAT+TGG - chr7.2:35345932-35345951 None:intergenic 30.0%
CATGTTAAGGAATCCAAAAT+GGG + chr7.2:35346314-35346333 MS.gene77345:intron 30.0%
GAACCAAACAACACAAATTT+AGG - chr7.2:35345678-35345697 None:intergenic 30.0%
GGTGTCAAAGGAAATAATTA+AGG + chr7.2:35348754-35348773 MS.gene77345:CDS 30.0%
TAATTCAGAGAAGAGAAGAT+TGG + chr7.2:35348578-35348597 MS.gene77345:CDS 30.0%
TTCATATATACAAGACAGCA+GGG - chr7.2:35346672-35346691 None:intergenic 30.0%
TTCTTTAAGCCACACATAAA+AGG + chr7.2:35346005-35346024 MS.gene77345:intron 30.0%
! TAATTTTATGTGGTTTCGGA+AGG - chr7.2:35347947-35347966 None:intergenic 30.0%
! TATAAGACTTGGTACCTATT+AGG - chr7.2:35347105-35347124 None:intergenic 30.0%
! TGTGGATGATATTTTTCCTA+AGG + chr7.2:35347273-35347292 MS.gene77345:CDS 30.0%
! TTAATAGTTGATGTTCCATC+AGG - chr7.2:35348869-35348888 None:intergenic 30.0%
! TTTTCTATGTATTCCTCCAA+TGG - chr7.2:35347733-35347752 None:intergenic 30.0%
!!! GTCCATGTGCAATTTTTTTA+GGG + chr7.2:35347408-35347427 MS.gene77345:intron 30.0%
!!! TGTAGGTTGATGTAATTTTG+CGG + chr7.2:35347212-35347231 MS.gene77345:intron 30.0%
!!! TGTCCATGTGCAATTTTTTT+AGG + chr7.2:35347407-35347426 MS.gene77345:intron 30.0%
AAAAGAGATGGACGTTACTA+CGG - chr7.2:35345793-35345812 None:intergenic 35.0%
AATCATTATGGTGAAGGTTG+GGG + chr7.2:35345714-35345733 MS.gene77345:CDS 35.0%
AATTTGTATGAGATCTGGGT+TGG - chr7.2:35346924-35346943 None:intergenic 35.0%
ACAATCATTATGGTGAAGGT+TGG + chr7.2:35345712-35345731 MS.gene77345:CDS 35.0%
ACTGGAAACCAAGTCTATAT+TGG + chr7.2:35348792-35348811 MS.gene77345:CDS 35.0%
AGAGATGACCAATATCACAA+GGG - chr7.2:35347604-35347623 None:intergenic 35.0%
AGGAATATAAGTCGAGTCTT+CGG - chr7.2:35348097-35348116 None:intergenic 35.0%
ATGACAATGCCAGTTGAATT+TGG + chr7.2:35348815-35348834 MS.gene77345:CDS 35.0%
ATGATTGACCCTTGTGATAT+TGG + chr7.2:35347593-35347612 MS.gene77345:intron 35.0%
ATTGGGGAGAAAAATTGTTG+GGG - chr7.2:35347075-35347094 None:intergenic 35.0%
CAAGGACACCAAAAATCTTA+GGG + chr7.2:35346642-35346661 MS.gene77345:intron 35.0%
CAATCATTATGGTGAAGGTT+GGG + chr7.2:35345713-35345732 MS.gene77345:CDS 35.0%
CATTGGGGAGAAAAATTGTT+GGG - chr7.2:35347076-35347095 None:intergenic 35.0%
GAAACATGTAACTTCATGTC+AGG - chr7.2:35346743-35346762 None:intergenic 35.0%
GAATACAAGGTACAATTCAG+AGG - chr7.2:35346171-35346190 None:intergenic 35.0%
GAATCTTCTCCAAATTCAAC+TGG - chr7.2:35348827-35348846 None:intergenic 35.0%
GATGTTAACTTATGCCCTAA+GGG + chr7.2:35346289-35346308 MS.gene77345:intron 35.0%
GCTAACTCAACTTGAAATCT+CGG + chr7.2:35345872-35345891 MS.gene77345:intron 35.0%
GTTCATATATACAAGACAGC+AGG - chr7.2:35346673-35346692 None:intergenic 35.0%
TAAGACCTCCAATCTTAAGT+GGG - chr7.2:35347028-35347047 None:intergenic 35.0%
TAGAGATGACCAATATCACA+AGG - chr7.2:35347605-35347624 None:intergenic 35.0%
TCAAGGACACCAAAAATCTT+AGG + chr7.2:35346641-35346660 MS.gene77345:intron 35.0%
TCATTGGGGAGAAAAATTGT+TGG - chr7.2:35347077-35347096 None:intergenic 35.0%
TGAAATCTCGGTATTTACGT+TGG + chr7.2:35345884-35345903 MS.gene77345:intron 35.0%
TGATGTTAACTTATGCCCTA+AGG + chr7.2:35346288-35346307 MS.gene77345:intron 35.0%
TTAAGACCTCCAATCTTAAG+TGG - chr7.2:35347029-35347048 None:intergenic 35.0%
TTCGACTACACCAATATTTG+AGG - chr7.2:35347860-35347879 None:intergenic 35.0%
TTGTGTGTGTGAGATTTAAG+TGG + chr7.2:35345943-35345962 MS.gene77345:intron 35.0%
TTTACAGATGTGTGATGCTA+TGG + chr7.2:35348528-35348547 MS.gene77345:CDS 35.0%
! AACAATTTTTCTCCCCAATG+AGG + chr7.2:35347076-35347095 MS.gene77345:intron 35.0%
! ACAATTTTTCTCCCCAATGA+GGG + chr7.2:35347077-35347096 MS.gene77345:intron 35.0%
! AGGCCTAAATTTGTGTTGTT+TGG + chr7.2:35345672-35345691 MS.gene77345:CDS 35.0%
! CAAAATGGGCAATTTTGCAT+TGG + chr7.2:35346328-35346347 MS.gene77345:intron 35.0%
! CAATGCAAAATTGCCCATTT+TGG - chr7.2:35346330-35346349 None:intergenic 35.0%
! TGTTCATTGCCTTTTATGTG+TGG - chr7.2:35346017-35346036 None:intergenic 35.0%
!! AAATCAAGGCCATTGATTTG+TGG + chr7.2:35348551-35348570 MS.gene77345:CDS 35.0%
!! AGGTATTGAATATCCGATTG+TGG + chr7.2:35347293-35347312 MS.gene77345:intron 35.0%
!! TACAAGAAGAGTACCACAAT+CGG - chr7.2:35347309-35347328 None:intergenic 35.0%
!! TAGGGGCACCAAAATTATTA+GGG + chr7.2:35346265-35346284 MS.gene77345:intron 35.0%
!! TTAGGGGCACCAAAATTATT+AGG + chr7.2:35346264-35346283 MS.gene77345:intron 35.0%
!!! GTAGGTTGATGTAATTTTGC+GGG + chr7.2:35347213-35347232 MS.gene77345:intron 35.0%
!!! TAGGTTGATGTAATTTTGCG+GGG + chr7.2:35347214-35347233 MS.gene77345:intron 35.0%
AAGTACACAATCGCTAATGC+TGG - chr7.2:35347658-35347677 None:intergenic 40.0%
ACCTATTAGGTACCCTCATT+GGG - chr7.2:35347092-35347111 None:intergenic 40.0%
ATCAGTGACGAGCAAATAGA+AGG + chr7.2:35348130-35348149 MS.gene77345:CDS 40.0%
ATGTCAGGTTCATTGAGACA+AGG - chr7.2:35346728-35346747 None:intergenic 40.0%
ATTCCTTAACATGTGCCCTT+AGG - chr7.2:35346307-35346326 None:intergenic 40.0%
GACGTTACTACGGTTTAAAG+AGG - chr7.2:35345783-35345802 None:intergenic 40.0%
GCATTAGCGATTGTGTACTT+TGG + chr7.2:35347658-35347677 MS.gene77345:CDS 40.0%
GCTAAGTATAGATCCCTTTG+TGG + chr7.2:35345840-35345859 MS.gene77345:intron 40.0%
GTCATGTGGGAATGGAATAT+TGG - chr7.2:35348897-35348916 None:intergenic 40.0%
GTGTGATGCTATGGAAATCA+AGG + chr7.2:35348537-35348556 MS.gene77345:CDS 40.0%
TACCTATTAGGTACCCTCAT+TGG - chr7.2:35347093-35347112 None:intergenic 40.0%
TACGAACAAGAAATCTCAGC+AGG + chr7.2:35345980-35345999 MS.gene77345:intron 40.0%
TATATACAAGACAGCAGGGT+CGG - chr7.2:35346668-35346687 None:intergenic 40.0%
TATGATCCACTTCATCCTGA+TGG + chr7.2:35348851-35348870 MS.gene77345:CDS 40.0%
TATTCCTCCAATGGAACATG+AGG - chr7.2:35347724-35347743 None:intergenic 40.0%
TCAGGATGAAGTGGATCATA+TGG - chr7.2:35348851-35348870 None:intergenic 40.0%
TCATTGAGACAAGGCTAGAA+GGG - chr7.2:35346719-35346738 None:intergenic 40.0%
TCTATTTGCTCGTCACTGAT+GGG - chr7.2:35348130-35348149 None:intergenic 40.0%
TGCTTTCCCAAATTCATCAC+TGG - chr7.2:35348467-35348486 None:intergenic 40.0%
TTAGCGATTGTGTACTTTGG+TGG + chr7.2:35347661-35347680 MS.gene77345:CDS 40.0%
TTAGTGTCTACTGTCTTGCA+GGG + chr7.2:35346192-35346211 MS.gene77345:intron 40.0%
TTCATTGAGACAAGGCTAGA+AGG - chr7.2:35346720-35346739 None:intergenic 40.0%
TTCCTTAACATGTGCCCTTA+GGG - chr7.2:35346306-35346325 None:intergenic 40.0%
TTCTATTTGCTCGTCACTGA+TGG - chr7.2:35348131-35348150 None:intergenic 40.0%
TTCTCTTTCTCAACGAGCAT+TGG + chr7.2:35346760-35346779 MS.gene77345:intron 40.0%
TTTAGTGTCTACTGTCTTGC+AGG + chr7.2:35346191-35346210 MS.gene77345:intron 40.0%
! GTTTGGTTGGTTCTTAGTGA+TGG + chr7.2:35348701-35348720 MS.gene77345:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - chr7.2:35346437-35346456 None:intergenic 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG - chr7.2:35346436-35346455 None:intergenic 40.0%
!! TCAAGTTGAGTTAGCCCTTA+CGG - chr7.2:35345867-35345886 None:intergenic 40.0%
!!! TTTTGGTGCCCCTAAAAAAG+TGG - chr7.2:35346259-35346278 None:intergenic 40.0%
AGGTCATCAAAGAAGCAGAC+TGG + chr7.2:35348774-35348793 MS.gene77345:CDS 45.0%
ATTCCCACATGACGAGGATT+GGG + chr7.2:35348904-35348923 MS.gene77345:CDS 45.0%
CCCATTGTGAATGCTCTTAC+GGG + chr7.2:35347138-35347157 MS.gene77345:intron 45.0%
CCCCATTGTGAATGCTCTTA+CGG + chr7.2:35347137-35347156 MS.gene77345:intron 45.0%
CCTATTAGGTACCCTCATTG+GGG - chr7.2:35347091-35347110 None:intergenic 45.0%
GAGTTCATTTCTCTGCTGAG+GGG + chr7.2:35348723-35348742 MS.gene77345:CDS 45.0%
GATGTTCCATCAGGATGAAG+TGG - chr7.2:35348860-35348879 None:intergenic 45.0%
GCTACTCTTGCTCACTTGTA+CGG + chr7.2:35345738-35345757 MS.gene77345:CDS 45.0%
GGAGTTCATTTCTCTGCTGA+GGG + chr7.2:35348722-35348741 MS.gene77345:CDS 45.0%
GTTTGGGTCCCACTTAAGAT+TGG + chr7.2:35347017-35347036 MS.gene77345:intron 45.0%
TAGTGTCTACTGTCTTGCAG+GGG + chr7.2:35346193-35346212 MS.gene77345:intron 45.0%
TATTCCATTCCCACATGACG+AGG + chr7.2:35348898-35348917 MS.gene77345:CDS 45.0%
TCCTTAACATGTGCCCTTGA+GGG + chr7.2:35346420-35346439 MS.gene77345:intron 45.0%
TCTCATCTTCCACATCCAAG+TGG + chr7.2:35347691-35347710 MS.gene77345:CDS 45.0%
TCTTGGTCCTCATGTTCCAT+TGG + chr7.2:35347714-35347733 MS.gene77345:CDS 45.0%
TGGAGTTCATTTCTCTGCTG+AGG + chr7.2:35348721-35348740 MS.gene77345:CDS 45.0%
TGGTTGCTCTTGTTGCTCAA+TGG - chr7.2:35347638-35347657 None:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG + chr7.2:35346419-35346438 MS.gene77345:intron 45.0%
! GATACGCTGGTTGGAATTCA+AGG + chr7.2:35347236-35347255 MS.gene77345:CDS 45.0%
! TGTATGAGATCTGGGTTGGA+GGG - chr7.2:35346920-35346939 None:intergenic 45.0%
! TGTTGGGGTCTTATAAGACC+CGG - chr7.2:35347060-35347079 None:intergenic 45.0%
! TTGTATGAGATCTGGGTTGG+AGG - chr7.2:35346921-35346940 None:intergenic 45.0%
!! CCCGTAAGAGCATTCACAAT+GGG - chr7.2:35347141-35347160 None:intergenic 45.0%
!! CCGTAAGAGCATTCACAATG+GGG - chr7.2:35347140-35347159 None:intergenic 45.0%
!! CGTAAGAGCATTCACAATGG+GGG - chr7.2:35347139-35347158 None:intergenic 45.0%
!! TCCCGTAAGAGCATTCACAA+TGG - chr7.2:35347142-35347161 None:intergenic 45.0%
!! ATTAAAAAATTAAAATGTAA+GGG - chr7.2:35346988-35347007 None:intergenic 5.0%
!! TATTAAAAAATTAAAATGTA+AGG - chr7.2:35346989-35347008 None:intergenic 5.0%
!!! TTTTAATATTAAAAAAGTTT+GGG + chr7.2:35347001-35347020 MS.gene77345:intron 5.0%
!!! TTTTTAATATTAAAAAAGTT+TGG + chr7.2:35347000-35347019 MS.gene77345:intron 5.0%
AAGGCGTGGTCTACAAGTTG+TGG + chr7.2:35347255-35347274 MS.gene77345:CDS 50.0%
ACATGACGAGGATTGGGAGT+GGG + chr7.2:35348910-35348929 MS.gene77345:CDS 50.0%
ACATGAGGACCAAGACCACT+TGG - chr7.2:35347709-35347728 None:intergenic 50.0%
ACTCCCAATCCTCGTCATGT+GGG - chr7.2:35348910-35348929 None:intergenic 50.0%
AGATCCCTTTGTGGTCCGTA+AGG + chr7.2:35345849-35345868 MS.gene77345:intron 50.0%
AGTGCCTACTTCTGCGACTA+TGG + chr7.2:35346067-35346086 MS.gene77345:intron 50.0%
ATTTGCTCGTCACTGATGGG+AGG - chr7.2:35348127-35348146 None:intergenic 50.0%
CAATCCTCGTCATGTGGGAA+TGG - chr7.2:35348905-35348924 None:intergenic 50.0%
CATTCCCACATGACGAGGAT+TGG + chr7.2:35348903-35348922 MS.gene77345:CDS 50.0%
CCCTAAAAAAGTGGTGCCCT+GGG - chr7.2:35346250-35346269 None:intergenic 50.0%
CTACTTCTGCGACTATGGAG+CGG + chr7.2:35346072-35346091 MS.gene77345:intron 50.0%
CTTCCACATCCAAGTGGTCT+TGG + chr7.2:35347697-35347716 MS.gene77345:CDS 50.0%
GAGGTCTTAAGTAAGACCCC+GGG + chr7.2:35347039-35347058 MS.gene77345:intron 50.0%
GATCCCTTTGTGGTCCGTAA+GGG + chr7.2:35345850-35345869 MS.gene77345:intron 50.0%
GGAGGTCTTAAGTAAGACCC+CGG + chr7.2:35347038-35347057 MS.gene77345:intron 50.0%
GTCGCAGAAGTAGGCACTAT+TGG - chr7.2:35346065-35346084 None:intergenic 50.0%
TAGCCCTTACGGACCACAAA+GGG - chr7.2:35345856-35345875 None:intergenic 50.0%
TGCTCACTTGTACGGTCGTA+AGG + chr7.2:35345746-35345765 MS.gene77345:CDS 50.0%
TGGGTCCCACTTAAGATTGG+AGG + chr7.2:35347020-35347039 MS.gene77345:intron 50.0%
TGGTCCTCATGTTCCATTGG+AGG + chr7.2:35347717-35347736 MS.gene77345:CDS 50.0%
TTAGCCCTTACGGACCACAA+AGG - chr7.2:35345857-35345876 None:intergenic 50.0%
! AGGGTCGGCCCTAAGATTTT+TGG - chr7.2:35346653-35346672 None:intergenic 50.0%
! GGGGAGTGAAATGGTGTCAA+AGG + chr7.2:35348742-35348761 MS.gene77345:CDS 50.0%
! GTAATTTTGCGGGGATACGC+TGG + chr7.2:35347223-35347242 MS.gene77345:CDS 50.0%
! GTTGGGGTCTTATAAGACCC+GGG - chr7.2:35347059-35347078 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG + chr7.2:35346301-35346320 MS.gene77345:intron 50.0%
! TTGGGGTCTTATAAGACCCG+GGG - chr7.2:35347058-35347077 None:intergenic 50.0%
!! CCCCAATGAGGGTACCTAAT+AGG + chr7.2:35347088-35347107 MS.gene77345:intron 50.0%
!!! CCAGGGCACCACTTTTTTAG+GGG + chr7.2:35346248-35346267 MS.gene77345:intron 50.0%
!!! CCCAGGGCACCACTTTTTTA+GGG + chr7.2:35346247-35346266 MS.gene77345:intron 50.0%
CACATGACGAGGATTGGGAG+TGG + chr7.2:35348909-35348928 MS.gene77345:CDS 55.0%
CACTCCCAATCCTCGTCATG+TGG - chr7.2:35348911-35348930 None:intergenic 55.0%
CACTGATGGGAGGACAACTG+AGG - chr7.2:35348117-35348136 None:intergenic 55.0%
CCCCTAAAAAAGTGGTGCCC+TGG - chr7.2:35346251-35346270 None:intergenic 55.0%
CGCTCCATAGTCGCAGAAGT+AGG - chr7.2:35346074-35346093 None:intergenic 55.0%
CTCTGCTGAGGGGAGTGAAA+TGG + chr7.2:35348733-35348752 MS.gene77345:CDS 55.0%
GCTGGTTGGAATTCAAGGCG+TGG + chr7.2:35347241-35347260 MS.gene77345:CDS 55.0%
GGACCAAGACCACTTGGATG+TGG - chr7.2:35347703-35347722 None:intergenic 55.0%
TGTCTACTGTCTTGCAGGGG+TGG + chr7.2:35346196-35346215 MS.gene77345:intron 55.0%
! GCCCTCAAGGGCACATGTTA+AGG - chr7.2:35346424-35346443 None:intergenic 55.0%
! TTTTGCGGGGATACGCTGGT+TGG + chr7.2:35347227-35347246 MS.gene77345:CDS 55.0%
!!! GCCCAGGGCACCACTTTTTT+AGG + chr7.2:35346246-35346265 MS.gene77345:intron 55.0%
TCTTGCAGGGGTGGCCCTGA+GGG + chr7.2:35346205-35346224 MS.gene77345:intron 65.0%
GTCTTGCAGGGGTGGCCCTG+AGG + chr7.2:35346204-35346223 MS.gene77345:intron 70.0%
CTGAGGGCGAGCTCCAGGGG+CGG + chr7.2:35346221-35346240 MS.gene77345:intron 75.0%
GCCCCTGGAGCTCGCCCTCA+GGG - chr7.2:35346222-35346241 None:intergenic 75.0%
GCCCTGAGGGCGAGCTCCAG+GGG + chr7.2:35346218-35346237 MS.gene77345:intron 75.0%
GGCCCTGAGGGCGAGCTCCA+GGG + chr7.2:35346217-35346236 MS.gene77345:intron 75.0%
TGGCCCTGAGGGCGAGCTCC+AGG + chr7.2:35346216-35346235 MS.gene77345:intron 75.0%
! AGGGCGAGCTCCAGGGGCGG+CGG + chr7.2:35346224-35346243 MS.gene77345:intron 80.0%
! CGCCCCTGGAGCTCGCCCTC+AGG - chr7.2:35346223-35346242 None:intergenic 80.0%
! AGCTCCAGGGGCGGCGGCCC+AGG + chr7.2:35346230-35346249 MS.gene77345:intron 85.0%
! GCTCCAGGGGCGGCGGCCCA+GGG + chr7.2:35346231-35346250 MS.gene77345:intron 85.0%
! GTGCCCTGGGCCGCCGCCCC+TGG - chr7.2:35346237-35346256 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 35345669 35348937 35345669 ID=MS.gene77345
chr7.2 mRNA 35345669 35348937 35345669 ID=MS.gene77345.t1;Parent=MS.gene77345
chr7.2 exon 35345669 35345767 35345669 ID=MS.gene77345.t1.exon1;Parent=MS.gene77345.t1
chr7.2 CDS 35345669 35345767 35345669 ID=cds.MS.gene77345.t1;Parent=MS.gene77345.t1
chr7.2 exon 35347217 35347294 35347217 ID=MS.gene77345.t1.exon2;Parent=MS.gene77345.t1
chr7.2 CDS 35347217 35347294 35347217 ID=cds.MS.gene77345.t1;Parent=MS.gene77345.t1
chr7.2 exon 35347631 35347780 35347631 ID=MS.gene77345.t1.exon3;Parent=MS.gene77345.t1
chr7.2 CDS 35347631 35347780 35347631 ID=cds.MS.gene77345.t1;Parent=MS.gene77345.t1
chr7.2 exon 35348085 35348158 35348085 ID=MS.gene77345.t1.exon4;Parent=MS.gene77345.t1
chr7.2 CDS 35348085 35348158 35348085 ID=cds.MS.gene77345.t1;Parent=MS.gene77345.t1
chr7.2 exon 35348468 35348617 35348468 ID=MS.gene77345.t1.exon5;Parent=MS.gene77345.t1
chr7.2 CDS 35348468 35348617 35348468 ID=cds.MS.gene77345.t1;Parent=MS.gene77345.t1
chr7.2 exon 35348718 35348937 35348718 ID=MS.gene77345.t1.exon6;Parent=MS.gene77345.t1
chr7.2 CDS 35348718 35348937 35348718 ID=cds.MS.gene77345.t1;Parent=MS.gene77345.t1
Gene Sequence

>MS.gene77345

ATGAGGCCTAAATTTGTGTTGTTTGGTTCTTCCATTGTTCAATACAATCATTATGGTGAAGGTTGGGGAGCTACTCTTGCTCACTTGTACGGTCGTAAGGTACTCTTTCTTCCTCTTTAAACCGTAGTAACGTCCATCTCTTTTAATAAGTACTTTTTGAGAAAATTTATAGCTAAGTATAGATCCCTTTGTGGTCCGTAAGGGCTAACTCAACTTGAAATCTCGGTATTTACGTTGGACACTTTCACTTGAATTTGAACCCAATATCTCATAATTGTGTGTGTGAGATTTAAGTGGTGTTTGTTTTCGTCTACGAACAAGAAATCTCAGCAGGTGTTCTTTAAGCCACACATAAAAGGCAATGAACACACAATTTTTGTTAATGAAGTTCGACCAATAGTGCCTACTTCTGCGACTATGGAGCGGTTATAGTTCCATTTATATTAGTGTTATAATTAATATATATAATATTATTACTACGATTCAGTTTACAATATTACCTCTGAATTGTACCTTGTATTCTTTAGTGTCTACTGTCTTGCAGGGGTGGCCCTGAGGGCGAGCTCCAGGGGCGGCGGCCCAGGGCACCACTTTTTTAGGGGCACCAAAATTATTAGGGTGATGTTAACTTATGCCCTAAGGGCACATGTTAAGGAATCCAAAATGGGCAATTTTGCATTGGAAAACATGATAATTTAACTTTTAAGAAGTTGACTGCACGACTTTTGATGCGTATATTTCTATAATAAGTTCCTTAACATGTGCCCTTGAGGGCACAAGTTAACATTTACCAAATTATTATTTTTACTTAGTAGTTAGTACTATGTAGATATATTTCTTTTTAATTCACTTTGATTAATTCTATTGAAAAAATATTTTTAGATAACTTTGATTATAAATGAATATTTTGCAAAATAAAAAAGCAAGATGAAAAATATTTAAATAATTAAAAGGGCACAATTTATTATTTCGTCAAGGACACCAAAAATCTTAGGGCCGACCCTGCTGTCTTGTATATATGAACCTTACTTTAACAAAATCTTATTACCCTTCTAGCCTTGTCTCAATGAACCTGACATGAAGTTACATGTTTCTCTTTCTCAACGAGCATTGGAATTAAGTTATCTCTATAAGTGCTTTTAGAGTATCCACAATAGAGATACTCATTTTTAGGTACATAAATGGGTCTTACGTGTACACATCACTCATTTATAATTTTTTAATAGCAGTATCTAATAAGTATTCAATCCCTCCAACCCAGATCTCATACAAATTTCTTAAATGAGATCCACTAATCAACTATCAATAACTTTATACCCTTACATTTTAATTTTTTAATATTAAAAAAGTTTGGGTCCCACTTAAGATTGGAGGTCTTAAGTAAGACCCCGGGTCTTATAAGACCCCAACAATTTTTCTCCCCAATGAGGGTACCTAATAGGTACCAAGTCTTATATGTTTAAGACTCCCCCATTGTGAATGCTCTTACGGGAATATGATAGTAGTACATTAATCAATGACTTTTTAACTTATCATTATTTGATGTAGGTTGATGTAATTTTGCGGGGATACGCTGGTTGGAATTCAAGGCGTGGTCTACAAGTTGTGGATGATATTTTTCCTAAGGTATTGAATATCCGATTGTGGTACTCTTCTTGTAATACAATTGTTTTACCTTCTTTCCTCAGAAATAATATTTTACCCTAAGCTTAATTTCACTTTTTTGATCTATAAGTATTGTCCATGTGCAATTTTTTTAGGGATTATCTCAATTTTTTAGTCAATGGTTTTTTATTTGTCAAATTGAGAAGATTATATTGATTTACATGGTATTAAACATACTATAATGATCTTGCTGAATAAGGTTCACAACACACATAAGTTTTTGTTTATATATGAATGTGATTATAAAATTTTGTTGACAATGATTGACCCTTGTGATATTGGTCATCTCTAATACAGAATACCATTGAGCAACAAGAGCAACCAGCATTAGCGATTGTGTACTTTGGTGGTAATGATTCTCATCTTCCACATCCAAGTGGTCTTGGTCCTCATGTTCCATTGGAGGAATACATAGAAAATATGAGGAACATTGCTAATTATCTAAAGGTAAAATTTGTCATAGTAGAATTTCATTTTCCTATCTTAATTGTCATTATCATATGGATTAGATGAATTTTTTTTACCTCAAATATTGGTGTAGTCGAACATGTCATATACGACTTATCATATTTCGATAATATCTTTTTCAACTACAATAATTTGGTAAATTCCTTCCGAAACCACATAAAATTATTGTATATCTTAATACATAAAATTCAATATTTATCGATCTTTTTTTTTTTTTTTTGAAAAAAATATTTATCTCATGATCTTGAATGTTAAGTTTGACACAACTCCTAATGATTGACAGATAAATTCACCGAAGACTCGACTTATATTCCTCAGTTGTCCTCCCATCAGTGACGAGCAAATAGAAGGCAACATGTAATACCTACAATTGGTTTGCTATTTTTTATTGTTAATTAATCATAATGTCACAGAAAAATTATAGATATATACACATATATCTAGACTATGATTACATAGTGTAACAAAACTAGTTAATTTTTTTATAGACAAATTAGTACTATATTAGTTGTTATGCTAGTATATAAAACATGCACCTAAAATAGTATACCTAGACTTTGATAAGTTTTGTTCGTTTAAGATTGTTTTACAAAATTCTAGAACCTATTAGATTTTTAATTCCTAACTTTTATGTATTATATAAACAAATTGTTGTAATGAATCCAGTGATGAATTTGGGAAAGCAATAAGGAGAAATGAAGTTCGTAAAATATATTCAGATGCACTTTTACAGATGTGTGATGCTATGGAAATCAAGGCCATTGATTTGTGGTCTTTAATTCAGAGAAGAGAAGATTGGAAAGAAGTTTGCTTCATGTAAGTATGCTCTCATATATGTATATGTCTAAATTAAAATAAAATAAAAAATCAAATCTTCATTTCAATCATTTAATTAAGTGGTTTGGTTGGTTCTTAGTGATGGAGTTCATTTCTCTGCTGAGGGGAGTGAAATGGTGTCAAAGGAAATAATTAAGGTCATCAAAGAAGCAGACTGGAAACCAAGTCTATATTGGATGACAATGCCAGTTGAATTTGGAGAAGATTCACCATATGATCCACTTCATCCTGATGGAACATCAACTATTAATATCTCCAATATTCCATTCCCACATGACGAGGATTGGGAGTGGGAGTAG

Protein sequence

>MS.gene77345.t1

MRPKFVLFGSSIVQYNHYGEGWGATLAHLYGRKVDVILRGYAGWNSRRGLQVVDDIFPKNTIEQQEQPALAIVYFGGNDSHLPHPSGLGPHVPLEEYIENMRNIANYLKINSPKTRLIFLSCPPISDEQIEGNIDEFGKAIRRNEVRKIYSDALLQMCDAMEIKAIDLWSLIQRREDWKEVCFIDGVHFSAEGSEMVSKEIIKVIKEADWKPSLYWMTMPVEFGEDSPYDPLHPDGTSTINISNIPFPHDEDWEWE