AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79032

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79032.t1 MTR_6g007633 68.067 238 60 2 1 235 10 234 1.74e-105 305
MS.gene79032.t1 MTR_6g007637 72.727 209 54 1 1 206 11 219 1.46e-100 293
MS.gene79032.t1 MTR_6g007623 61.826 241 75 2 1 238 7 233 3.68e-97 284
MS.gene79032.t1 MTR_6g007610 54.464 224 84 4 1 210 10 229 5.01e-71 218
MS.gene79032.t1 MTR_8g099730 46.226 212 110 2 1 209 20 230 3.83e-58 185
MS.gene79032.t1 MTR_3g080990 45.498 211 111 2 2 209 11 220 5.86e-53 172
MS.gene79032.t1 MTR_4g106990 48.958 192 94 2 19 207 35 225 1.93e-50 165
MS.gene79032.t1 MTR_8g099730 46.667 165 87 1 45 209 3 166 2.27e-46 153
MS.gene79032.t1 MTR_8g042490 32.870 216 140 3 2 214 17 230 5.08e-35 125
MS.gene79032.t1 MTR_2g073190 36.279 215 132 3 2 213 17 229 1.03e-33 128
MS.gene79032.t1 MTR_1g029380 36.697 218 129 5 3 215 9 222 4.95e-30 112
MS.gene79032.t1 MTR_2g436310 35.391 243 141 7 2 232 8 246 6.26e-29 110
MS.gene79032.t1 MTR_1g028460 35.577 208 126 4 2 203 9 214 1.56e-28 109
MS.gene79032.t1 MTR_8g096320 36.893 206 119 6 3 202 13 213 1.91e-28 108
MS.gene79032.t1 MTR_3g089125 35.678 199 123 3 7 202 13 209 2.44e-28 108
MS.gene79032.t1 MTR_7g007490 31.646 237 153 4 7 240 18 248 5.56e-26 102
MS.gene79032.t1 MTR_3g098910 34.500 200 124 4 7 202 17 213 8.55e-26 103
MS.gene79032.t1 MTR_5g092600 32.743 226 142 6 14 235 24 243 1.65e-25 101
MS.gene79032.t1 MTR_2g007890 32.701 211 129 7 7 210 20 224 2.90e-25 101
MS.gene79032.t1 MTR_8g096310 28.175 252 156 8 1 240 11 249 2.00e-24 99.0
MS.gene79032.t1 MTR_5g067530 34.328 201 122 5 7 202 18 213 4.02e-24 97.8
MS.gene79032.t1 MTR_3g090950 32.850 207 131 4 2 202 9 213 3.05e-22 92.4
MS.gene79032.t1 MTR_3g090940 31.884 207 133 4 2 202 9 213 8.50e-22 91.3
MS.gene79032.t1 MTR_3g098930 37.640 178 100 6 3 174 14 186 1.30e-20 87.0
MS.gene79032.t1 MTR_8g096320 36.646 161 94 5 45 202 3 158 3.21e-19 83.2
MS.gene79032.t1 MTR_7g405710 33.654 208 128 6 7 209 17 219 2.55e-18 82.4
MS.gene79032.t1 MTR_7g405730 31.683 202 126 6 7 202 17 212 2.95e-16 76.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79032.t1 AT5G62850 46.602 206 106 2 1 203 10 214 3.49e-59 187
MS.gene79032.t1 AT4G10850 47.418 213 105 4 1 208 12 222 4.28e-59 188
MS.gene79032.t1 AT5G62850 43.318 217 105 4 1 213 10 212 5.18e-53 171
MS.gene79032.t1 AT3G28007 49.515 206 100 2 1 203 10 214 6.06e-51 167
MS.gene79032.t1 AT1G66770 43.192 213 114 4 1 208 12 222 4.47e-50 165
MS.gene79032.t1 AT5G40260 40.991 222 125 3 1 216 10 231 2.92e-46 154
MS.gene79032.t1 AT5G40260 41.146 192 108 2 1 187 10 201 1.96e-40 139
MS.gene79032.t1 AT4G15920 34.052 232 140 5 2 229 8 230 1.75e-36 129
MS.gene79032.t1 AT1G21460 35.841 226 139 4 7 229 13 235 2.20e-35 127
MS.gene79032.t1 AT3G14770 33.824 204 130 3 2 202 17 218 9.86e-33 119
MS.gene79032.t1 AT3G16690 35.714 210 126 5 2 206 8 213 6.03e-31 114
MS.gene79032.t1 AT3G16690 35.714 210 126 5 2 206 43 248 1.18e-30 115
MS.gene79032.t1 AT1G21460 37.838 185 110 3 3 184 9 191 2.50e-27 104
MS.gene79032.t1 AT2G39060 32.068 237 150 4 7 240 17 245 3.95e-27 105
MS.gene79032.t1 AT5G13170 32.287 223 136 7 7 223 19 232 4.71e-27 106
MS.gene79032.t1 AT5G23660 36.321 212 119 7 7 213 19 219 4.83e-27 105
MS.gene79032.t1 AT4G25010 34.804 204 126 5 3 202 13 213 2.15e-25 101
MS.gene79032.t1 AT5G50800 34.518 197 122 5 7 199 17 210 4.14e-25 100
MS.gene79032.t1 AT3G48740 33.488 215 133 6 7 216 19 228 3.97e-24 98.2
MS.gene79032.t1 AT5G53190 33.333 207 130 4 2 202 9 213 3.29e-23 95.1
MS.gene79032.t1 AT5G50790 31.455 213 134 6 7 215 17 221 4.36e-22 92.8
MS.gene79032.t1 AT3G16690 32.624 141 89 3 2 138 8 146 2.73e-12 64.3

Find 44 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAACATTGCAAATCTT+TGG 0.261599 6.2:-3026565 MS.gene79032:CDS
GTGTGAAATACATGCCATTT+TGG 0.263887 6.2:-3026855 MS.gene79032:CDS
AATGGTATTGGAGCAATCTT+TGG 0.337675 6.2:-3026633 MS.gene79032:CDS
TCATACTATATGCTTATTAC+TGG 0.339121 6.2:-3026599 MS.gene79032:CDS
ACCAACAATTAAAGACCTTT+TGG 0.340820 6.2:+3027056 None:intergenic
ACTTCCTCAATCGACTTTGC+TGG 0.377459 6.2:-3026819 MS.gene79032:CDS
TATGCCAGAAAGAACCAAAA+TGG 0.388373 6.2:+3026841 None:intergenic
ACTACATTCACAACCGGAAC+TGG 0.393487 6.2:+3026495 None:intergenic
GAGAGAACTAGAGTGCTGTT+TGG 0.402304 6.2:+3027816 None:intergenic
ACCAAAAGGTCTTTAATTGT+TGG 0.403531 6.2:-3027057 MS.gene79032:CDS
AGAGAACTAGAGTGCTGTTT+GGG 0.404951 6.2:+3027817 None:intergenic
TTAATAATTCCATAGGAAGT+TGG 0.407029 6.2:+3027924 None:intergenic
GAATGTAGTCGATCTGATTA+TGG 0.410860 6.2:-3026481 MS.gene79032:CDS
TGATAACGATGTTCCAGTTC+CGG 0.412800 6.2:-3026508 MS.gene79032:CDS
GTGCTGTTTGGGTGCACAAA+AGG 0.430396 6.2:+3027828 None:intergenic
TTGCAGATCAGCAATGGTAT+TGG 0.445462 6.2:-3026645 MS.gene79032:intron
CTATGGAATTATTAAGAAGA+AGG 0.449513 6.2:-3027916 MS.gene79032:CDS
TGGCATGTATTTCACACTCT+TGG 0.458040 6.2:+3026861 None:intergenic
TAGTGTTGGAATTCTCTTTG+AGG 0.470382 6.2:-3027787 MS.gene79032:CDS
ACCAGGACATAGATGTCAAA+GGG 0.471199 6.2:+3026775 None:intergenic
TATTGCAGACCAACTTCCTA+TGG 0.483106 6.2:-3027933 MS.gene79032:intron
CTTCTTCTTAATAATTCCAT+AGG 0.488380 6.2:+3027917 None:intergenic
CAATTCAACAAGTGTGGACC+TGG 0.501834 6.2:+3027876 None:intergenic
AGATCGACTACATTCACAAC+CGG 0.509429 6.2:+3026489 None:intergenic
CCCCTTTGACATCTATGTCC+TGG 0.515797 6.2:-3026776 MS.gene79032:intron
GCTGATTGATCTTCTCATTG+AGG 0.535760 6.2:-3027133 MS.gene79032:CDS
GCAGGGAATGTGATCTCCCT+CGG 0.545530 6.2:-3028568 MS.gene79032:intron
TGTCTCTCATCTTATCATCA+TGG 0.549887 6.2:-3027001 MS.gene79032:intron
GTTCTCTCTATCAATAGTGT+TGG 0.555736 6.2:-3027801 MS.gene79032:CDS
ATATGCTTATTACTGGTGCA+TGG 0.570723 6.2:-3026592 MS.gene79032:CDS
TACCAGGACATAGATGTCAA+AGG 0.572327 6.2:+3026774 None:intergenic
TACTACCTGACACTACCAAA+AGG 0.574411 6.2:-3027071 MS.gene79032:CDS
AATTATTAAGAAGAAGGCTG+TGG 0.576708 6.2:-3027910 MS.gene79032:CDS
TAGTCCAGCAAAGTCGATTG+AGG 0.581653 6.2:+3026815 None:intergenic
TATATGTAATATCAACATGT+TGG 0.593083 6.2:-3027031 MS.gene79032:CDS
TGAATATTGCAGATCAGCAA+TGG 0.603008 6.2:-3026651 MS.gene79032:intron
AGTTTGATTACGCTGGTGAG+AGG 0.609407 6.2:+3028539 None:intergenic
CTGGTGAGAGGAACAATCCG+AGG 0.630041 6.2:+3028551 None:intergenic
GGACATAGATGTCAAAGGGG+TGG 0.637928 6.2:+3026779 None:intergenic
AAAGCACAATTCAACAAGTG+TGG 0.638191 6.2:+3027870 None:intergenic
CAACATTGTTATCAGAACAA+TGG 0.640897 6.2:+3027095 None:intergenic
TGGTGAGAGGAACAATCCGA+GGG 0.673498 6.2:+3028552 None:intergenic
GCTGTGGAATATGTCAAACC+AGG 0.673916 6.2:-3027894 MS.gene79032:CDS
CCAGGACATAGATGTCAAAG+GGG 0.714700 6.2:+3026776 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTATATTAATTAACAT+GGG + chr6.2:3028698-3028717 None:intergenic 10.0%
!! ATATTATTATGTATCTAATT+AGG + chr6.2:3027214-3027233 None:intergenic 10.0%
!! CAAATGTATATTAATTAACA+TGG + chr6.2:3028699-3028718 None:intergenic 15.0%
!! TATATATTAGATAAATTACC+AGG + chr6.2:3028624-3028643 None:intergenic 15.0%
!! TATATTATTGTAGTTCAATT+GGG - chr6.2:3028648-3028667 MS.gene79032:intron 15.0%
!! CAATTGAACTACAATAATAT+AGG + chr6.2:3028649-3028668 None:intergenic 20.0%
!! CTATATTATTGTAGTTCAAT+TGG - chr6.2:3028647-3028666 MS.gene79032:intron 20.0%
!! TAATAACTCAATGAATAGTT+TGG + chr6.2:3028046-3028065 None:intergenic 20.0%
!! TATATGTAATATCAACATGT+TGG - chr6.2:3028348-3028367 MS.gene79032:intron 20.0%
!! TTTCCAAATAAATCAAATCA+AGG + chr6.2:3027397-3027416 None:intergenic 20.0%
!!! AAATTTTCATGAATTCATGA+AGG + chr6.2:3027934-3027953 None:intergenic 20.0%
!!! GCACATTTTTTTTACAAATT+AGG - chr6.2:3028920-3028939 MS.gene79032:intron 20.0%
!!! TTTTGTTACATATAATGAAC+AGG - chr6.2:3028480-3028499 MS.gene79032:intron 20.0%
! AAATCAACATTGCAAATCTT+TGG - chr6.2:3028814-3028833 MS.gene79032:intron 25.0%
! CTATGGAATTATTAAGAAGA+AGG - chr6.2:3027463-3027482 MS.gene79032:intron 25.0%
! CTTCTTCTTAATAATTCCAT+AGG + chr6.2:3027465-3027484 None:intergenic 25.0%
! GTGATCTGAATATAAACTAA+TGG + chr6.2:3028419-3028438 None:intergenic 25.0%
! TCATACTATATGCTTATTAC+TGG - chr6.2:3028780-3028799 MS.gene79032:intron 25.0%
! TTAATAATTCCATAGGAAGT+TGG + chr6.2:3027458-3027477 None:intergenic 25.0%
! TTGGAAATTGAATGAATGAA+TGG - chr6.2:3027410-3027429 MS.gene79032:intron 25.0%
! TTTATCTATGCCAACAAAAA+TGG - chr6.2:3027635-3027654 MS.gene79032:intron 25.0%
! TTTCAAATTAACCAAACGTT+AGG + chr6.2:3028107-3028126 None:intergenic 25.0%
!! AAACACTCTAAACAGTTTTT+AGG - chr6.2:3027171-3027190 MS.gene79032:intron 25.0%
!! ACACCTTGATTTGATTTATT+TGG - chr6.2:3027391-3027410 MS.gene79032:intron 25.0%
!! TACGGTTTAACTTATTCTAA+TGG - chr6.2:3026770-3026789 MS.gene79032:intron 25.0%
!!! TTTTTTGATTACCTAACGTT+TGG - chr6.2:3028093-3028112 MS.gene79032:intron 25.0%
AATCATTGATGTAACTAGAG+GGG + chr6.2:3027683-3027702 None:intergenic 30.0%
AATTATTAAGAAGAAGGCTG+TGG - chr6.2:3027469-3027488 MS.gene79032:intron 30.0%
ACCAAAAGGTCTTTAATTGT+TGG - chr6.2:3028322-3028341 MS.gene79032:intron 30.0%
ACTATAGTCTATATCCTACT+CGG + chr6.2:3027080-3027099 None:intergenic 30.0%
ACTCAATGAATAGTTTGGTA+TGG + chr6.2:3028041-3028060 None:intergenic 30.0%
AGAATAGTTAGTAGCATAAC+AGG + chr6.2:3028198-3028217 None:intergenic 30.0%
ATATCACTTTCAGTGATAAC+AGG - chr6.2:3028070-3028089 MS.gene79032:intron 30.0%
CAACATTGTTATCAGAACAA+TGG + chr6.2:3028287-3028306 None:intergenic 30.0%
CAATCATTGATGTAACTAGA+GGG + chr6.2:3027684-3027703 None:intergenic 30.0%
GAAGTTTCTTAGTTCAGTTA+CGG - chr6.2:3026752-3026771 MS.gene79032:intron 30.0%
TAACTGAACTAAGAAACTTC+TGG + chr6.2:3026752-3026771 None:intergenic 30.0%
TAGTTTGGTATGGACATAAA+AGG + chr6.2:3028031-3028050 None:intergenic 30.0%
TCAATCATTGATGTAACTAG+AGG + chr6.2:3027685-3027704 None:intergenic 30.0%
! ACCAACAATTAAAGACCTTT+TGG + chr6.2:3028326-3028345 None:intergenic 30.0%
!! ACTTGTTGAATTGTGCTTTT+TGG - chr6.2:3027513-3027532 MS.gene79032:intron 30.0%
!! CACAGTTGGCAAATTTTAAT+TGG + chr6.2:3027866-3027885 None:intergenic 30.0%
!! CTTGTTGAATTGTGCTTTTT+GGG - chr6.2:3027514-3027533 MS.gene79032:intron 30.0%
!!! AGAATTTTTCAAGACACAGT+TGG + chr6.2:3027880-3027899 None:intergenic 30.0%
AAAATTTCATCGTGTTCGTG+TGG + chr6.2:3026962-3026981 None:intergenic 35.0%
AAACCAAGTTGCTAATCGAA+TGG - chr6.2:3028136-3028155 MS.gene79032:intron 35.0%
AAAGCACAATTCAACAAGTG+TGG + chr6.2:3027512-3027531 None:intergenic 35.0%
AAGAGAAAGTTTGATTACGC+TGG + chr6.2:3026850-3026869 None:intergenic 35.0%
AGTTAGTAGCATAACAGGAA+TGG + chr6.2:3028193-3028212 None:intergenic 35.0%
AGTTGCTAATCGAATGGTTA+AGG - chr6.2:3028142-3028161 MS.gene79032:intron 35.0%
ATATGCTTATTACTGGTGCA+TGG - chr6.2:3028787-3028806 MS.gene79032:intron 35.0%
GAATGTAGTCGATCTGATTA+TGG - chr6.2:3028898-3028917 MS.gene79032:intron 35.0%
GTTCTCTCTATCAATAGTGT+TGG - chr6.2:3027578-3027597 MS.gene79032:intron 35.0%
TAACCATTCGATTAGCAACT+TGG + chr6.2:3028142-3028161 None:intergenic 35.0%
TAGCATAACAGGAATGGTAA+TGG + chr6.2:3028187-3028206 None:intergenic 35.0%
TATGCCAGAAAGAACCAAAA+TGG + chr6.2:3028541-3028560 None:intergenic 35.0%
TCTATGCCAACAAAAATGGA+CGG - chr6.2:3027639-3027658 MS.gene79032:intron 35.0%
TGAATATTGCAGATCAGCAA+TGG - chr6.2:3028728-3028747 MS.gene79032:intron 35.0%
TGTCTCTCATCTTATCATCA+TGG - chr6.2:3028378-3028397 MS.gene79032:intron 35.0%
! AATGGTATTGGAGCAATCTT+TGG - chr6.2:3028746-3028765 MS.gene79032:intron 35.0%
! TAGTGTTGGAATTCTCTTTG+AGG - chr6.2:3027592-3027611 MS.gene79032:intron 35.0%
!! ATTAGCAACTTGGTTTTCGT+AGG + chr6.2:3028132-3028151 None:intergenic 35.0%
!! CTAATGGATGTTCTGTGTTT+TGG - chr6.2:3026786-3026805 MS.gene79032:CDS 35.0%
!! GTGTGAAATACATGCCATTT+TGG - chr6.2:3028524-3028543 MS.gene79032:intron 35.0%
!! TTAGCAACTTGGTTTTCGTA+GGG + chr6.2:3028131-3028150 None:intergenic 35.0%
!!! TGTGCTTTTTGGGTGTTTTA+TGG - chr6.2:3027524-3027543 MS.gene79032:intron 35.0%
ACCAGGACATAGATGTCAAA+GGG + chr6.2:3028607-3028626 None:intergenic 40.0%
AGATCGACTACATTCACAAC+CGG + chr6.2:3028893-3028912 None:intergenic 40.0%
CGTAACGCTGTTGGAATTAT+AGG - chr6.2:3026481-3026500 MS.gene79032:CDS 40.0%
CTATGCCAACAAAAATGGAC+GGG - chr6.2:3027640-3027659 MS.gene79032:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr6.2:3027804-3027823 MS.gene79032:CDS 40.0%
GCACTATTTGCCACAATTCA+AGG - chr6.2:3027801-3027820 MS.gene79032:CDS 40.0%
GCTGATTGATCTTCTCATTG+AGG - chr6.2:3028246-3028265 MS.gene79032:intron 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr6.2:3027793-3027812 None:intergenic 40.0%
TACCAGGACATAGATGTCAA+AGG + chr6.2:3028608-3028627 None:intergenic 40.0%
TACTACCTGACACTACCAAA+AGG - chr6.2:3028308-3028327 MS.gene79032:intron 40.0%
TATTGCAGACCAACTTCCTA+TGG - chr6.2:3027446-3027465 MS.gene79032:intron 40.0%
TGGCATGTATTTCACACTCT+TGG + chr6.2:3028521-3028540 None:intergenic 40.0%
TGTAACTAGAGGGGAACATA+AGG + chr6.2:3027674-3027693 None:intergenic 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr6.2:3027827-3027846 MS.gene79032:CDS 40.0%
TTGCAGATCAGCAATGGTAT+TGG - chr6.2:3028734-3028753 MS.gene79032:intron 40.0%
! TGATAACGATGTTCCAGTTC+CGG - chr6.2:3028871-3028890 MS.gene79032:intron 40.0%
!! ACTTACCCGTCCATTTTTGT+TGG + chr6.2:3027648-3027667 None:intergenic 40.0%
!! AGAGAACTAGAGTGCTGTTT+GGG + chr6.2:3027565-3027584 None:intergenic 40.0%
!! ATGTTCTGTGTTTTGGATGC+AGG - chr6.2:3026793-3026812 MS.gene79032:CDS 40.0%
!! TGTTCTGTGTTTTGGATGCA+GGG - chr6.2:3026794-3026813 MS.gene79032:CDS 40.0%
!! TTTTGATTGAAGCCGTGTCT+GGG + chr6.2:3027045-3027064 None:intergenic 40.0%
!!! AAAGACCTTTTGGTAGTGTC+AGG + chr6.2:3028316-3028335 None:intergenic 40.0%
!!! CATGCCATTTTGGTTCTTTC+TGG - chr6.2:3028534-3028553 MS.gene79032:intron 40.0%
AAGTGTTTGTGCAACCGAGT+AGG - chr6.2:3027063-3027082 MS.gene79032:CDS 45.0%
ACTACATTCACAACCGGAAC+TGG + chr6.2:3028887-3028906 None:intergenic 45.0%
AGTTTGATTACGCTGGTGAG+AGG + chr6.2:3026843-3026862 None:intergenic 45.0%
CAATTCAACAAGTGTGGACC+TGG + chr6.2:3027506-3027525 None:intergenic 45.0%
CCAGGACATAGATGTCAAAG+GGG + chr6.2:3028606-3028625 None:intergenic 45.0%
GCTGTGGAATATGTCAAACC+AGG - chr6.2:3027485-3027504 MS.gene79032:intron 45.0%
TAGTCCAGCAAAGTCGATTG+AGG + chr6.2:3028567-3028586 None:intergenic 45.0%
TCAGTAGTTCGTAACGCTGT+TGG - chr6.2:3026472-3026491 MS.gene79032:CDS 45.0%
TTTGATTGAAGCCGTGTCTG+GGG + chr6.2:3027044-3027063 None:intergenic 45.0%
! ACTTCCTCAATCGACTTTGC+TGG - chr6.2:3028560-3028579 MS.gene79032:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr6.2:3027821-3027840 MS.gene79032:CDS 45.0%
!! CTTTTGATTGAAGCCGTGTC+TGG + chr6.2:3027046-3027065 None:intergenic 45.0%
!! GAGAGAACTAGAGTGCTGTT+TGG + chr6.2:3027566-3027585 None:intergenic 45.0%
AGCCACACCTCCTTGAATTG+TGG + chr6.2:3027814-3027833 None:intergenic 50.0%
CCCCTTTGACATCTATGTCC+TGG - chr6.2:3028603-3028622 MS.gene79032:intron 50.0%
GGACATAGATGTCAAAGGGG+TGG + chr6.2:3028603-3028622 None:intergenic 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr6.2:3027809-3027828 MS.gene79032:CDS 50.0%
TGGTGAGAGGAACAATCCGA+GGG + chr6.2:3026830-3026849 None:intergenic 50.0%
!! GTGCTGTTTGGGTGCACAAA+AGG + chr6.2:3027554-3027573 None:intergenic 50.0%
CTGGTGAGAGGAACAATCCG+AGG + chr6.2:3026831-3026850 None:intergenic 55.0%
GCAGGGAATGTGATCTCCCT+CGG - chr6.2:3026811-3026830 MS.gene79032:CDS 55.0%
TGTGTCAGACACCCCAGACA+CGG - chr6.2:3027030-3027049 MS.gene79032:CDS 55.0%
! GTGTGAGTGTCGTGTGGTGT+CGG + chr6.2:3026940-3026959 None:intergenic 55.0%
! CGTGTGGTGTGAGTGTCGTG+TGG + chr6.2:3026946-3026965 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 3026455 3028946 3026455 ID=MS.gene79032
chr6.2 mRNA 3026455 3028946 3026455 ID=MS.gene79032.t1;Parent=MS.gene79032
chr6.2 exon 3028931 3028946 3028931 ID=MS.gene79032.t1.exon1;Parent=MS.gene79032.t1
chr6.2 CDS 3028931 3028946 3028931 ID=cds.MS.gene79032.t1;Parent=MS.gene79032.t1
chr6.2 exon 3028550 3028586 3028550 ID=MS.gene79032.t1.exon2;Parent=MS.gene79032.t1
chr6.2 CDS 3028550 3028586 3028550 ID=cds.MS.gene79032.t1;Parent=MS.gene79032.t1
chr6.2 exon 3027740 3027947 3027740 ID=MS.gene79032.t1.exon3;Parent=MS.gene79032.t1
chr6.2 CDS 3027740 3027947 3027740 ID=cds.MS.gene79032.t1;Parent=MS.gene79032.t1
chr6.2 exon 3027002 3027163 3027002 ID=MS.gene79032.t1.exon4;Parent=MS.gene79032.t1
chr6.2 CDS 3027002 3027163 3027002 ID=cds.MS.gene79032.t1;Parent=MS.gene79032.t1
chr6.2 exon 3026777 3026899 3026777 ID=MS.gene79032.t1.exon5;Parent=MS.gene79032.t1
chr6.2 CDS 3026777 3026899 3026777 ID=cds.MS.gene79032.t1;Parent=MS.gene79032.t1
chr6.2 exon 3026455 3026661 3026455 ID=MS.gene79032.t1.exon6;Parent=MS.gene79032.t1
chr6.2 CDS 3026455 3026661 3026455 ID=cds.MS.gene79032.t1;Parent=MS.gene79032.t1
Gene Sequence

>MS.gene79032

ATGGTGAACGTTACAAGTCAGTAGTTCGTAACGCTGTTGGAATTATAGGTTTGTTAATCGCTTCTTCATCTTCGTCTTTCTCTTTGAATCGCTTCAATAATTTTGATTTGAGATTTTCACTGCAACGATTCACGTCGTGTGTTTGTTATGATTTAGCGTTAATTTGATCGATTTCAGAAATTTTTTAGTTTAGTTGAAGTTGATTTTAGCTTATTTTTGTTCATAATCTATTAATCATGCTTGCATGCATGTATGTATGAAGAGTAATATTATAACTTTTTCAGTTAATCGATTCCAGAAGTTTCTTAGTTCAGTTACGGTTTAACTTATTCTAATGGATGTTCTGTGTTTTGGATGCAGGGAATGTGATCTCCCTCGGATTGTTCCTCTCACCAGCGTAATCAAACTTTCTCTTTATCTTACTCTCTTTTGAACTTTTGTGATTCATGCATTTTGCACTGTGATACATAGTGTACTCGACACCGACACCACACGACACTCACACCACACGAACACGATGAAATTTTGAGAAAATACATAATTCAATGTAATTACAAGTGTCGTGTAAGTGTCACTGTGTCAGACACCCCAGACACGGCTTCAATCAAAAGTGTTTGTGCAACCGAGTAGGATATAGACTATAGTGTATATATACTTATTTAGTAGATTAGTTGATAGTCTCTAAATAACTACATACATTCGCATTTAAGAACTATAAACACTCTAAACAGTTTTTAGGAATTTTATTACATTTTGCCTAATTAGATACATAATAATATTTATAACATTATTCTTATTGCATGTTTAAACTATCATAATATAGAATTTCATTTAAACTATCATAAAATTATATGCACTTCTAAAACTATTGTGCATCTACATTTTCTTAATGAAATATTTGTGTATCTACATGACTAAACTGTGATTTTGTCAAATACACCTTGATTTGATTTATTTGGAAATTGAATGAATGAATGGTTTAATATGAATGTATTGCAGACCAACTTCCTATGGAATTATTAAGAAGAAGGCTGTGGAATATGTCAAACCAGGTCCACACTTGTTGAATTGTGCTTTTTGGGTGTTTTATGGAATGCCTTTTGTGCACCCAAACAGCACTCTAGTTCTCTCTATCAATAGTGTTGGAATTCTCTTTGAGGTTGTCTATCTTACTATCTTTTTTATCTATGCCAACAAAAATGGACGGGTAAGTGTGCCTTATGTTCCCCTCTAGTTACATCAATGATTGATTCACTGTGATTATAGTATTCATGAATGAGCAATGCTATATCTCTAGAAAAATAACATCAAGAATTCTTCAAGAATAAAGAGTAGCCAATCACAATGCACTATTTGCCACAATTCAAGGAGGTGTGGCTGAAAAATAGGAAGTGGACAAATAAATCATCCAATTAAAATTTGCCAACTGTGTCTTGAAAAATTCTTGAAACTATTTTTCTTGAGAAGTAGCATTTTCCTTCATGAATTCATGAAAATTTGCTGATTTTATTAGTAGATATCAAATATATATATGTAATCTTACTAATATGTTTTATGAATGTTCTGATTTTTTCCTTTTATGTCCATACCAAACTATTCATTGAGTTATTAGAGAATATCACTTTCAGTGATAACAGGTTTTTTGATTACCTAACGTTTGGTTAATTTGAAATCCCTACGAAAACCAAGTTGCTAATCGAATGGTTAAGGCGCTTTTTGTTAATGTAAACCATTACCATTCCTGTTATGCTACTAACTATTCTAAATTTTTGTCTAATTTCAGAACAAGTTGCTGATTGATCTTCTCATTGAGGCTGTTTTCTTTGCTACCATTGTTCTGATAACAATGTTGATACTACCTGACACTACCAAAAGGTCTTTAATTGTTGGTATTATATGTAATATCAACATGTTGGTGATGTATGTCTCTCATCTTATCATCATGGTAAGTAACTTCTATTCCATTAGTTTATATTCAGATCACATCATATTTGATAAAATATTTTCACTAAACTCAATTTGATATTTTGTTACATATAATGAACAGGCATACGTTATAAAGACCAAGAGTGTGAAATACATGCCATTTTGGTTCTTTCTGGCATACTTCCTCAATCGACTTTGCTGGACTACATATGCTCTACTCCACCCCTTTGACATCTATGTCCTGGTAATTTATCTAATATATATTCCTATATTATTGTAGTTCAATTGGGATGAAAGATTTATACTTAACTTAACCCATGTTAATTAATATACATTTGTATTTGTACTGAATATTGCAGATCAGCAATGGTATTGGAGCAATCTTTGGAGCTGTTCATCTCATACTATATGCTTATTACTGGTGCATGGAAAAAAATCAACATTGCAAATCTTTGGAGCTGTTCAGCTCATACTATATGCTTATTGATGATGATAACGATGTTCCAGTTCCGGTTGTGAATGTAGTCGATCTGATTATGGCACATTTTTTTTACAAATTAGGATGA
Protein sequence

>MS.gene79032.t1

MVNVTRNVISLGLFLSPAPTSYGIIKKKAVEYVKPGPHLLNCAFWVFYGMPFVHPNSTLVLSINSVGILFEVVYLTIFFIYANKNGRNKLLIDLLIEAVFFATIVLITMLILPDTTKRSLIVGIICNINMLVMYVSHLIIMAYVIKTKSVKYMPFWFFLAYFLNRLCWTTYALLHPFDIYVLISNGIGAIFGAVHLILYAYYWCMEKNQHCKSLELFSSYYMLIDDDNDVPVPVVNVVDLIMAHFFYKLG