AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79035

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79035.t1 MTR_6g007633 84.647 241 31 2 1 241 1 235 6.18e-144 402
MS.gene79035.t1 MTR_6g007623 81.328 241 37 3 1 241 1 233 3.31e-135 380
MS.gene79035.t1 MTR_6g007637 75.455 220 51 1 1 220 2 218 8.78e-119 339
MS.gene79035.t1 MTR_6g007610 55.285 246 92 3 1 235 1 239 6.39e-90 265
MS.gene79035.t1 MTR_8g099730 51.082 231 101 3 6 228 16 242 2.26e-75 229
MS.gene79035.t1 MTR_3g080990 52.402 229 105 3 1 229 1 225 2.37e-73 224
MS.gene79035.t1 MTR_4g106990 54.726 201 85 3 28 228 35 229 1.88e-63 198
MS.gene79035.t1 MTR_1g029380 45.116 215 113 4 10 224 7 216 1.11e-50 166
MS.gene79035.t1 MTR_8g099730 48.333 180 81 3 57 228 3 178 1.39e-50 164
MS.gene79035.t1 MTR_3g089125 44.344 221 110 5 12 232 9 216 1.62e-50 165
MS.gene79035.t1 MTR_2g436310 46.729 214 106 5 11 224 8 213 1.11e-49 163
MS.gene79035.t1 MTR_8g042490 38.667 225 129 4 8 232 14 229 1.55e-45 152
MS.gene79035.t1 MTR_1g028460 39.655 232 129 4 5 229 3 230 4.83e-44 149
MS.gene79035.t1 MTR_2g073190 38.839 224 131 4 6 229 12 229 2.19e-42 152
MS.gene79035.t1 MTR_8g096310 35.294 221 134 5 10 229 11 223 1.71e-39 138
MS.gene79035.t1 MTR_5g067530 38.942 208 121 4 10 217 12 213 6.54e-39 136
MS.gene79035.t1 MTR_8g096320 39.167 240 125 5 10 234 11 244 7.77e-39 135
MS.gene79035.t1 MTR_3g098910 36.239 218 132 4 12 229 13 223 1.01e-37 134
MS.gene79035.t1 MTR_3g090940 33.913 230 144 4 4 231 2 225 1.27e-37 132
MS.gene79035.t1 MTR_5g092600 38.785 214 120 6 12 223 14 218 4.61e-37 130
MS.gene79035.t1 MTR_3g090950 34.783 230 142 4 4 231 2 225 4.26e-36 128
MS.gene79035.t1 MTR_2g007890 34.951 206 127 4 12 217 16 214 6.65e-35 126
MS.gene79035.t1 MTR_7g007490 36.364 220 133 5 10 229 12 224 4.99e-34 123
MS.gene79035.t1 MTR_7g405710 35.498 231 135 7 12 241 13 230 4.37e-33 121
MS.gene79035.t1 MTR_3g098930 39.572 187 107 4 10 196 12 192 3.41e-31 114
MS.gene79035.t1 MTR_7g405730 34.434 212 129 5 12 221 13 216 8.35e-30 112
MS.gene79035.t1 MTR_8g096320 35.751 193 103 5 57 234 3 189 3.53e-21 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79035.t1 AT5G62850 54.783 230 99 3 1 229 1 226 4.09e-83 248
MS.gene79035.t1 AT4G10850 48.945 237 118 2 5 241 7 240 1.63e-78 237
MS.gene79035.t1 AT3G28007 59.633 218 84 2 1 218 1 214 1.06e-77 235
MS.gene79035.t1 AT5G62850 54.455 202 88 2 1 202 1 198 1.21e-72 221
MS.gene79035.t1 AT5G40260 51.376 218 105 1 1 218 1 217 1.72e-71 218
MS.gene79035.t1 AT1G66770 46.725 229 119 2 5 233 7 232 1.13e-68 212
MS.gene79035.t1 AT5G40260 50.990 202 98 1 1 202 1 201 4.04e-66 204
MS.gene79035.t1 AT4G15920 43.478 207 112 3 11 217 8 209 2.39e-53 172
MS.gene79035.t1 AT1G21460 44.444 225 120 4 5 229 2 221 1.21e-51 168
MS.gene79035.t1 AT3G16690 38.393 224 131 4 11 234 8 224 2.68e-47 156
MS.gene79035.t1 AT3G16690 38.393 224 131 4 11 234 43 259 4.88e-47 157
MS.gene79035.t1 AT1G21460 44.388 196 104 4 4 199 1 191 1.61e-43 146
MS.gene79035.t1 AT5G13170 34.821 224 139 4 1 224 4 220 4.99e-42 145
MS.gene79035.t1 AT3G14770 36.842 228 136 4 5 232 11 230 3.30e-41 141
MS.gene79035.t1 AT5G50800 37.668 223 131 5 10 229 11 228 1.98e-40 140
MS.gene79035.t1 AT5G23660 37.719 228 135 5 10 236 13 234 3.66e-40 140
MS.gene79035.t1 AT4G25010 36.449 214 131 4 1 214 2 210 8.07e-39 136
MS.gene79035.t1 AT3G48740 36.404 228 138 5 10 236 13 234 1.58e-38 135
MS.gene79035.t1 AT5G53190 38.498 213 125 3 7 217 5 213 1.17e-37 132
MS.gene79035.t1 AT5G50790 32.889 225 145 4 2 226 3 221 1.87e-37 133
MS.gene79035.t1 AT2G39060 34.419 215 133 4 12 226 13 219 5.28e-31 115
MS.gene79035.t1 AT3G16690 31.795 195 123 4 11 205 8 192 2.03e-24 96.7

Find 64 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTCTTCTTGGAATTCT+TGG 0.104803 6.2:+3056264 None:intergenic
CATTGTTGAATTGTGCATTT+TGG 0.177365 6.2:-3056396 MS.gene79035:CDS
TCTCTAATTTCAGAAGTATA+TGG 0.230735 6.2:-3056094 MS.gene79035:intron
ACGCACCCTTCCTTTCTTCT+TGG 0.244879 6.2:+3056255 None:intergenic
TTCAACAATGTTGCTAAGTA+TGG 0.264358 6.2:+3056409 None:intergenic
CGTAACGTTGTTGGTATCAT+AGG 0.284067 6.2:-3057436 MS.gene79035:intron
CCCCTTTGACCTTTATGTTC+TGG 0.317767 6.2:-3055718 MS.gene79035:intron
TTGATAATCTTGTAGAAAGT+TGG 0.335730 6.2:+3056463 None:intergenic
TACCAACAATTAAAGACCTT+TGG 0.339806 6.2:+3055995 None:intergenic
GTGTGAAATACATGCCATTC+TGG 0.340578 6.2:-3055797 MS.gene79035:CDS
TCATACTATATGGCTATTAC+TGG 0.341787 6.2:-3055525 MS.gene79035:CDS
ACTATTCAGCTCATACTATA+TGG 0.346925 6.2:-3055535 MS.gene79035:CDS
CTCTAATTTCAGAAGTATAT+GGG 0.350155 6.2:-3056093 MS.gene79035:intron
TGTGCACCCAAACAGCCTTT+TGG 0.359306 6.2:-3056353 MS.gene79035:CDS
ACTTCTGCAATGGACTTTGC+TGG 0.366094 6.2:-3055761 MS.gene79035:CDS
AATGTTGCTAAGTATGGATC+TGG 0.369740 6.2:+3056415 None:intergenic
GTGACGACCAAAAGGCTGTT+TGG 0.401052 6.2:+3056346 None:intergenic
AACAAGTCCAACACCATTGA+TGG 0.405041 6.2:+3056324 None:intergenic
ACCAACAATTAAAGACCTTT+GGG 0.405429 6.2:+3055996 None:intergenic
AGGCTGTTTGGGTGCACAAA+AGG 0.410351 6.2:+3056358 None:intergenic
GATCAGACTGCAGTCGCAAC+TGG 0.411701 6.2:+3055451 None:intergenic
AAATCAGATTGATGATGATA+AGG 0.420470 6.2:-3055491 MS.gene79035:CDS
TGGCATGTATTTCACACTCT+TGG 0.431195 6.2:+3055803 None:intergenic
ACCAGAACATAAAGGTCAAA+GGG 0.444154 6.2:+3055717 None:intergenic
TTGCAGATCAGCAATGGTAT+TGG 0.445462 6.2:-3055571 MS.gene79035:intron
CTACAAGATTATCAAGAAGA+AGG 0.445823 6.2:-3056455 MS.gene79035:CDS
TCAGTGATTCGTAACGTTGT+TGG 0.451760 6.2:-3057445 MS.gene79035:CDS
ACCCAAAGGTCTTTAATTGT+TGG 0.456975 6.2:-3055997 MS.gene79035:CDS
ACTGCAGTCGCAACTGGAGC+TGG 0.457083 6.2:+3055457 None:intergenic
CATGCCATTCTGGCTCTCTC+TGG 0.459353 6.2:-3055787 MS.gene79035:CDS
TGCTTCTCCTCTTACGATCA+TGG 0.464189 6.2:-3055941 MS.gene79035:intron
TATATGGCTATTACTGGTGC+AGG 0.465242 6.2:-3055519 MS.gene79035:CDS
AATCAGATTGATGATGATAA+GGG 0.471988 6.2:-3055490 MS.gene79035:CDS
GTCGCAACTGGAGCTGGACC+TGG 0.487021 6.2:+3055463 None:intergenic
GTCGTCACCATCAATGGTGT+TGG 0.498613 6.2:-3056331 MS.gene79035:CDS
CATTGATGGTGACGACCAAA+AGG 0.503896 6.2:+3056338 None:intergenic
CAATTAAAGACCTTTGGGTA+TGG 0.506371 6.2:+3056001 None:intergenic
TTACTTACCATGATCGTAAG+AGG 0.508164 6.2:+3055934 None:intergenic
TCCAAGAATTCCAAGAAGAA+AGG 0.508774 6.2:-3056265 MS.gene79035:CDS
AATAAATTACCAGAACATAA+AGG 0.509442 6.2:+3055709 None:intergenic
GGCTATTACTGGTGCAGGGG+AGG 0.516094 6.2:-3055514 MS.gene79035:CDS
GATGATGATAAGGGTGGTCC+AGG 0.518060 6.2:-3055481 MS.gene79035:CDS
AATGGTATTGGAGTAATCTC+TGG 0.518369 6.2:-3055559 MS.gene79035:CDS
TGACGACCAAAAGGCTGTTT+GGG 0.519716 6.2:+3056347 None:intergenic
TACCAGAACATAAAGGTCAA+AGG 0.528400 6.2:+3055716 None:intergenic
GGGGATTATTCTTCTCATTG+AGG 0.533263 6.2:-3056073 MS.gene79035:CDS
ATAACAGAGTTGGCACTACA+TGG 0.538105 6.2:-3056024 MS.gene79035:CDS
CATTGTTCTGATAACAGAGT+TGG 0.552416 6.2:-3056034 MS.gene79035:CDS
GATTATCAAGAAGAAGGATG+TGG 0.554099 6.2:-3056449 MS.gene79035:CDS
TCTAATTTCAGAAGTATATG+GGG 0.558102 6.2:-3056092 MS.gene79035:intron
TTAGCCAGAGAGAGCCAGAA+TGG 0.559920 6.2:+3055783 None:intergenic
AGAATTCCAAGAAGAAAGGA+AGG 0.564362 6.2:-3056261 MS.gene79035:CDS
TCTCTGGCTAACTTCTGCAA+TGG 0.569392 6.2:-3055771 MS.gene79035:CDS
CAACGTTACGAATCACTGAC+TGG 0.576683 6.2:+3057449 None:intergenic
ATATGGCTATTACTGGTGCA+GGG 0.590867 6.2:-3055518 MS.gene79035:CDS
TGAATATTGCAGATCAGCAA+TGG 0.603008 6.2:-3055577 MS.gene79035:intron
CACTACATGGCCATACCCAA+AGG 0.608199 6.2:-3056011 MS.gene79035:CDS
GAACATAAAGGTCAAAGGGG+TGG 0.619001 6.2:+3055721 None:intergenic
CAACTCTGTTATCAGAACAA+TGG 0.647388 6.2:+3056035 None:intergenic
TATGGCTATTACTGGTGCAG+GGG 0.648799 6.2:-3055517 MS.gene79035:CDS
ATGTTGCTAAGTATGGATCT+GGG 0.654732 6.2:+3056416 None:intergenic
CAGATTGATGATGATAAGGG+TGG 0.669162 6.2:-3055487 MS.gene79035:CDS
GAATTCCAAGAAGAAAGGAA+GGG 0.672405 6.2:-3056260 MS.gene79035:intron
CCAGAACATAAAGGTCAAAG+GGG 0.687128 6.2:+3055718 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTATTATGATTTTG+TGG - chr6.2:3055964-3055983 MS.gene79035:CDS 10.0%
!! ATGATCTGAATATAAATTAA+TGG + chr6.2:3057010-3057029 None:intergenic 15.0%
!!! ATAATTGTATTTAGTTCAAT+TGG - chr6.2:3057264-3057283 MS.gene79035:intron 15.0%
!!! TTTTTTTTTTTTTGAATGCA+GGG - chr6.2:3055709-3055728 MS.gene79035:intron 15.0%
!!! TTTTTTTTTTTTTTGAATGC+AGG - chr6.2:3055708-3055727 MS.gene79035:intron 15.0%
!! AATAAATTACCAGAACATAA+AGG + chr6.2:3057204-3057223 None:intergenic 20.0%
!!! AAGATATTGTTTTCAACTTT+TGG - chr6.2:3056337-3056356 MS.gene79035:CDS 20.0%
!!! CTATATCTGTGATTTTTTTT+TGG - chr6.2:3055924-3055943 MS.gene79035:intron 20.0%
! CTTGGAATAGATAAAAAAGA+TGG + chr6.2:3056631-3056650 None:intergenic 25.0%
! TAACACATCATGAACTAATT+AGG + chr6.2:3056715-3056734 None:intergenic 25.0%
! TAATTAGTTCATGATGTGTT+AGG - chr6.2:3056714-3056733 MS.gene79035:intron 25.0%
!! ATTGTTGAATTGTGCATTTT+GGG - chr6.2:3056515-3056534 MS.gene79035:intron 25.0%
!! CTCTAATTTCAGAAGTATAT+GGG - chr6.2:3056817-3056836 MS.gene79035:intron 25.0%
!! TCTAATTTCAGAAGTATATG+GGG - chr6.2:3056818-3056837 MS.gene79035:intron 25.0%
!! TCTCTAATTTCAGAAGTATA+TGG - chr6.2:3056816-3056835 MS.gene79035:intron 25.0%
!! TTACGTGAATATAGTTGTTT+TGG - chr6.2:3055796-3055815 MS.gene79035:CDS 25.0%
!! TTGATAATCTTGTAGAAAGT+TGG + chr6.2:3056450-3056469 None:intergenic 25.0%
!!! AAATCAGATTGATGATGATA+AGG - chr6.2:3057419-3057438 MS.gene79035:intron 25.0%
!!! AATCAGATTGATGATGATAA+GGG - chr6.2:3057420-3057439 MS.gene79035:intron 25.0%
!!! GTGTTAACTATTGATTTGTT+TGG - chr6.2:3056377-3056396 MS.gene79035:CDS 25.0%
ACCAACAATTAAAGACCTTT+GGG + chr6.2:3056917-3056936 None:intergenic 30.0%
ACTATTCAGCTCATACTATA+TGG - chr6.2:3057375-3057394 MS.gene79035:intron 30.0%
ATCGTTGATCTAAATATAGC+TGG + chr6.2:3056042-3056061 None:intergenic 30.0%
CTACAAGATTATCAAGAAGA+AGG - chr6.2:3056455-3056474 MS.gene79035:CDS 30.0%
TACCAACAATTAAAGACCTT+TGG + chr6.2:3056918-3056937 None:intergenic 30.0%
TCAACTAGGTAAGAGATATA+GGG - chr6.2:3056284-3056303 MS.gene79035:CDS 30.0%
TCATACTATATGGCTATTAC+TGG - chr6.2:3057385-3057404 MS.gene79035:intron 30.0%
TTCAACAATGTTGCTAAGTA+TGG + chr6.2:3056504-3056523 None:intergenic 30.0%
TTCAACTAGGTAAGAGATAT+AGG - chr6.2:3056283-3056302 MS.gene79035:CDS 30.0%
TTGACATAACCATGGTTTAT+CGG - chr6.2:3056066-3056085 MS.gene79035:CDS 30.0%
! ACTTGTTACATATGATGAAC+AGG - chr6.2:3057069-3057088 MS.gene79035:intron 30.0%
! CATTGTTGAATTGTGCATTT+TGG - chr6.2:3056514-3056533 MS.gene79035:intron 30.0%
! TTGTTTTCAACTTTTGGCAT+TGG - chr6.2:3056343-3056362 MS.gene79035:CDS 30.0%
!! CACACTCTTGGTTTTTATAA+CGG + chr6.2:3057098-3057117 None:intergenic 30.0%
!!! TGCACTATTAGTTTTCAACT+AGG - chr6.2:3056270-3056289 MS.gene79035:CDS 30.0%
AATGTTGCTAAGTATGGATC+TGG + chr6.2:3056498-3056517 None:intergenic 35.0%
ACAAGTCACAGCAATACTAT+AGG + chr6.2:3057238-3057257 None:intergenic 35.0%
ACCAGAACATAAAGGTCAAA+GGG + chr6.2:3057196-3057215 None:intergenic 35.0%
ACCCAAAGGTCTTTAATTGT+TGG - chr6.2:3056913-3056932 MS.gene79035:intron 35.0%
AGAATTCCAAGAAGAAAGGA+AGG - chr6.2:3056649-3056668 MS.gene79035:intron 35.0%
ATGTTGCTAAGTATGGATCT+GGG + chr6.2:3056497-3056516 None:intergenic 35.0%
CAACTCTGTTATCAGAACAA+TGG + chr6.2:3056878-3056897 None:intergenic 35.0%
CAATTAAAGACCTTTGGGTA+TGG + chr6.2:3056912-3056931 None:intergenic 35.0%
CATTGTTCTGATAACAGAGT+TGG - chr6.2:3056876-3056895 MS.gene79035:intron 35.0%
GAATTCCAAGAAGAAAGGAA+GGG - chr6.2:3056650-3056669 MS.gene79035:intron 35.0%
GAGAGTTTAATTAGTTACGC+TGG + chr6.2:3055765-3055784 None:intergenic 35.0%
GATTATCAAGAAGAAGGATG+TGG - chr6.2:3056461-3056480 MS.gene79035:CDS 35.0%
TACCAGAACATAAAGGTCAA+AGG + chr6.2:3057197-3057216 None:intergenic 35.0%
TCCAAGAATTCCAAGAAGAA+AGG - chr6.2:3056645-3056664 MS.gene79035:intron 35.0%
TCCTTTCTTCTTGGAATTCT+TGG + chr6.2:3056649-3056668 None:intergenic 35.0%
TGAATATTGCAGATCAGCAA+TGG - chr6.2:3057333-3057352 MS.gene79035:intron 35.0%
TGTTTGGCACTTCAACTTAA+GGG - chr6.2:3056393-3056412 MS.gene79035:CDS 35.0%
TTACTTACCATGATCGTAAG+AGG + chr6.2:3056979-3056998 None:intergenic 35.0%
TTGTTTGGCACTTCAACTTA+AGG - chr6.2:3056392-3056411 MS.gene79035:CDS 35.0%
! AATGGTATTGGAGTAATCTC+TGG - chr6.2:3057351-3057370 MS.gene79035:intron 35.0%
!! TGTGCATTTTGGGTATTCTA+TGG - chr6.2:3056525-3056544 MS.gene79035:intron 35.0%
AAAAGACGACCGATAAACCA+TGG + chr6.2:3056078-3056097 None:intergenic 40.0%
AACAAGTCCAACACCATTGA+TGG + chr6.2:3056589-3056608 None:intergenic 40.0%
ATAACAGAGTTGGCACTACA+TGG - chr6.2:3056886-3056905 MS.gene79035:intron 40.0%
ATATGGCTATTACTGGTGCA+GGG - chr6.2:3057392-3057411 MS.gene79035:intron 40.0%
CCAGAACATAAAGGTCAAAG+GGG + chr6.2:3057195-3057214 None:intergenic 40.0%
CGATGAGTTTGACATAACCA+TGG - chr6.2:3056058-3056077 MS.gene79035:CDS 40.0%
CGTAACGTTGTTGGTATCAT+AGG - chr6.2:3055474-3055493 MS.gene79035:CDS 40.0%
GGGGATTATTCTTCTCATTG+AGG - chr6.2:3056837-3056856 MS.gene79035:intron 40.0%
GTGTGAAATACATGCCATTC+TGG - chr6.2:3057113-3057132 MS.gene79035:intron 40.0%
TATATGGCTATTACTGGTGC+AGG - chr6.2:3057391-3057410 MS.gene79035:intron 40.0%
TCAGTGATTCGTAACGTTGT+TGG - chr6.2:3055465-3055484 MS.gene79035:CDS 40.0%
TGGCATGTATTTCACACTCT+TGG + chr6.2:3057110-3057129 None:intergenic 40.0%
TTGCAGATCAGCAATGGTAT+TGG - chr6.2:3057339-3057358 MS.gene79035:intron 40.0%
!! CAGATTGATGATGATAAGGG+TGG - chr6.2:3057423-3057442 MS.gene79035:intron 40.0%
CAACGTTACGAATCACTGAC+TGG + chr6.2:3055464-3055483 None:intergenic 45.0%
CCCCTTTGACCTTTATGTTC+TGG - chr6.2:3057192-3057211 MS.gene79035:intron 45.0%
GAACATAAAGGTCAAAGGGG+TGG + chr6.2:3057192-3057211 None:intergenic 45.0%
TATGGCTATTACTGGTGCAG+GGG - chr6.2:3057393-3057412 MS.gene79035:intron 45.0%
TCTCTGGCTAACTTCTGCAA+TGG - chr6.2:3057139-3057158 MS.gene79035:intron 45.0%
TGACGACCAAAAGGCTGTTT+GGG + chr6.2:3056566-3056585 None:intergenic 45.0%
TGCTTCTCCTCTTACGATCA+TGG - chr6.2:3056969-3056988 MS.gene79035:intron 45.0%
! ACTTCTGCAATGGACTTTGC+TGG - chr6.2:3057149-3057168 MS.gene79035:intron 45.0%
! CTTTTGGTCGTCACCATCAA+TGG - chr6.2:3056573-3056592 MS.gene79035:intron 45.0%
!! CATTGATGGTGACGACCAAA+AGG + chr6.2:3056575-3056594 None:intergenic 45.0%
!! AAAATGTATATTAATTAATA+TGG + chr6.2:3057310-3057329 None:intergenic 5.0%
!! AAATGTATATTAATTAATAT+GGG + chr6.2:3057309-3057328 None:intergenic 5.0%
ACGCACCCTTCCTTTCTTCT+TGG + chr6.2:3056658-3056677 None:intergenic 50.0%
AGGCTGTTTGGGTGCACAAA+AGG + chr6.2:3056555-3056574 None:intergenic 50.0%
CACTACATGGCCATACCCAA+AGG - chr6.2:3056899-3056918 MS.gene79035:intron 50.0%
GATGATGATAAGGGTGGTCC+AGG - chr6.2:3057429-3057448 MS.gene79035:intron 50.0%
GTCGTCACCATCAATGGTGT+TGG - chr6.2:3056579-3056598 MS.gene79035:intron 50.0%
GTGACGACCAAAAGGCTGTT+TGG + chr6.2:3056567-3056586 None:intergenic 50.0%
TTAGCCAGAGAGAGCCAGAA+TGG + chr6.2:3057130-3057149 None:intergenic 50.0%
! TGTGCACCCAAACAGCCTTT+TGG - chr6.2:3056557-3056576 MS.gene79035:intron 50.0%
!! CATGCCATTCTGGCTCTCTC+TGG - chr6.2:3057123-3057142 MS.gene79035:intron 55.0%
ACTGCAGTCGCAACTGGAGC+TGG + chr6.2:3057456-3057475 None:intergenic 60.0%
GGCTATTACTGGTGCAGGGG+AGG - chr6.2:3057396-3057415 MS.gene79035:intron 60.0%
GTCGCAACTGGAGCTGGACC+TGG + chr6.2:3057450-3057469 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 3055453 3057479 3055453 ID=MS.gene79035
chr6.2 mRNA 3055453 3057479 3055453 ID=MS.gene79035.t1;Parent=MS.gene79035
chr6.2 exon 3057437 3057479 3057437 ID=MS.gene79035.t1.exon1;Parent=MS.gene79035.t1
chr6.2 CDS 3057437 3057479 3057437 ID=cds.MS.gene79035.t1;Parent=MS.gene79035.t1
chr6.2 exon 3057166 3057202 3057166 ID=MS.gene79035.t1.exon2;Parent=MS.gene79035.t1
chr6.2 CDS 3057166 3057202 3057166 ID=cds.MS.gene79035.t1;Parent=MS.gene79035.t1
chr6.2 exon 3056261 3056486 3056261 ID=MS.gene79035.t1.exon3;Parent=MS.gene79035.t1
chr6.2 CDS 3056261 3056486 3056261 ID=cds.MS.gene79035.t1;Parent=MS.gene79035.t1
chr6.2 exon 3055942 3056103 3055942 ID=MS.gene79035.t1.exon4;Parent=MS.gene79035.t1
chr6.2 CDS 3055942 3056103 3055942 ID=cds.MS.gene79035.t1;Parent=MS.gene79035.t1
chr6.2 exon 3055719 3055841 3055719 ID=MS.gene79035.t1.exon5;Parent=MS.gene79035.t1
chr6.2 CDS 3055719 3055841 3055719 ID=cds.MS.gene79035.t1;Parent=MS.gene79035.t1
chr6.2 exon 3055453 3055587 3055453 ID=MS.gene79035.t1.exon6;Parent=MS.gene79035.t1
chr6.2 CDS 3055453 3055587 3055453 ID=cds.MS.gene79035.t1;Parent=MS.gene79035.t1
Gene Sequence

>MS.gene79035

ATGGTGAACCAGTCAGTGATTCGTAACGTTGTTGGTATCATAGGTTTGTTAATCACTTCTTCTTCTCTTTTCAGTATCGCGTTTCAGTTGATTTTAACTTTTTCTCATAATCGATTATCATGCATGCATGCATAAAGTATAATTTTAACTTTTTCTGATAATCGATTACACAAGTTTCTTAGTTCAGTTACGATTGATTTTAGCTTTTTATGTTAATCGATTAATCATGCATAACTTTATATGTTTCTGATTGATTTTTTTTTTTTTTTGAATGCAGGGAATGTTATCTCGTTCTTCTTGTTCTTCTCACCAGCGTAACTAATTAAACTCTCTCTTTCTCTGTTTACGTGAATATAGTTGTTTTGGTTTAATCTATGAAGTTTAATTATTAATTAATCATTGATCTATAATTATAAAATTGTTATTAATAAACTACATGAAAATTTGTTGTGCTGTAGTTTTGAATCGTTACTATATCTGTGATTTTTTTTTGGTCAAGTTATATTTGTGATTTTTATTATTATGATTTTGTGGTATTTTATTCTATTTTAATGAAAGTATCATACTCTATTTTAAAGAAAGTATACCAGCTATATTTAGATCAACGATGAGTTTGACATAACCATGGTTTATCGGTCGTCTTTTCAAAGCTTCAATAAAAAAACAATGTCACGTGATTTCGTCAAACTCATCGTGATTGTAAAGATAAACTTCGAAAGCATACACTTGTACTATTAATTTTCAAAGCTTCAATAAAATAATGTTGTGACTTTGATTTCATCAAACTCATCGTGATTTTAATTAGTTTTCAAAGCTTTGCACTATTAGTTTTCAACTAGGTAAGAGATATAGGGTGTACTGTTTAATTAAAATAAAACTAGATTAAGATATTGTTTTCAACTTTTGGCATTGGAAAATGATAATGTGTTAACTATTGATTTGTTTGGCACTTCAACTTAAGGGTTACTAATGAATTATTTGAATGAAATGCAGTCCAACTTTCTACAAGATTATCAAGAAGAAGGATGTGGAAGAGTTCAGCCCAGATCCATACTTAGCAACATTGTTGAATTGTGCATTTTGGGTATTCTATGGAATGCCTTTTGTGCACCCAAACAGCCTTTTGGTCGTCACCATCAATGGTGTTGGACTTGTTTTCGAGATTTTCTATCTTACCATCTTTTTTATCTATTCCAAGAATTCCAAGAAGAAAGGAAGGGTGCGTATGCTTTTGAATGTTCTGTTTTTTCTTTTGATCACCTAATTAGTTCATGATGTGTTAGGTTATTCACATAATAGAGTTGATTTGCTTCTTTGTTAATGTAACTATTTATATTCTTCTGCTACTCACTACTTTTTTTTTTCTCTAATTTCAGAAGTATATGGGGATTATTCTTCTCATTGAGGCTGTTTTCTTTGCTGCCATTGTTCTGATAACAGAGTTGGCACTACATGGCCATACCCAAAGGTCTTTAATTGTTGGTATTCTCTGTGATTTCTTCAACATATTGATGTATGCTTCTCCTCTTACGATCATGGTAAGTAACTTCTATTCCATTAATTTATATTCAGATCATATGAAGATTATACTGTATTGTATAAAGTATTTTCTCTAAACTTGTTACATATGATGAACAGGCAACCGTTATAAAAACCAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTGGCTAACTTCTGCAATGGACTTTGCTGGACAACATATGCTCTGCTCCACCCCTTTGACCTTTATGTTCTGGTAATTTATTTAATACATAATCCTATAGTATTGCTGTGACTTGTGAGTTAATAATTGTATTTAGTTCAATTGGATGAAAGATCTATACTTAACCCATATTAATTAATATACATTTTTACTGAATATTGCAGATCAGCAATGGTATTGGAGTAATCTCTGGAACTATTCAGCTCATACTATATGGCTATTACTGGTGCAGGGGAGGAAATCAGATTGATGATGATAAGGGTGGTCCAGGTCCAGCTCCAGTTGCGACTGCAGTCTGA
Protein sequence

>MS.gene79035.t1

MVNQSVIRNVVGIIGNVISFFLFFSPAPTFYKIIKKKDVEEFSPDPYLATLLNCAFWVFYGMPFVHPNSLLVVTINGVGLVFEIFYLTIFFIYSKNSKKKGRKYMGIILLIEAVFFAAIVLITELALHGHTQRSLIVGILCDFFNILMYASPLTIMATVIKTKSVKYMPFWLSLANFCNGLCWTTYALLHPFDLYVLISNGIGVISGTIQLILYGYYWCRGGNQIDDDKGGPGPAPVATAV