Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79443.t1 | RHN49252.1 | 90.6 | 159 | 15 | 0 | 1 | 159 | 191 | 349 | 1.60E-81 | 312 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79443.t1 | I6YGS0 | 35.0 | 117 | 66 | 2 | 42 | 156 | 208 | 316 | 8.5e-15 | 81.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79443.t1 | A2Q324 | 90.6 | 159 | 15 | 0 | 1 | 159 | 161 | 319 | 1.2e-81 | 312.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049549 | MS.gene79443 | 0.818175 | 2.25E-52 | -1.69E-46 |
MS.gene049634 | MS.gene79443 | 0.827211 | 1.77E-54 | -1.69E-46 |
MS.gene050380 | MS.gene79443 | 0.801425 | 9.06E-49 | -1.69E-46 |
MS.gene050381 | MS.gene79443 | 0.814878 | 1.23E-51 | -1.69E-46 |
MS.gene050647 | MS.gene79443 | 0.802969 | 4.36E-49 | -1.69E-46 |
MS.gene05079 | MS.gene79443 | 0.817273 | 3.59E-52 | -1.69E-46 |
MS.gene051138 | MS.gene79443 | 0.800304 | 1.53E-48 | -1.69E-46 |
MS.gene051632 | MS.gene79443 | 0.838192 | 3.33E-57 | -1.69E-46 |
MS.gene05240 | MS.gene79443 | 0.812467 | 4.18E-51 | -1.69E-46 |
MS.gene052805 | MS.gene79443 | 0.809733 | 1.64E-50 | -1.69E-46 |
MS.gene053406 | MS.gene79443 | 0.81973 | 9.96E-53 | -1.69E-46 |
MS.gene053420 | MS.gene79443 | 0.828301 | 9.70E-55 | -1.69E-46 |
MS.gene054146 | MS.gene79443 | 0.804134 | 2.50E-49 | -1.69E-46 |
MS.gene054181 | MS.gene79443 | 0.833626 | 4.79E-56 | -1.69E-46 |
MS.gene054742 | MS.gene79443 | 0.800666 | 1.29E-48 | -1.69E-46 |
MS.gene055124 | MS.gene79443 | 0.801857 | 7.39E-49 | -1.69E-46 |
MS.gene055154 | MS.gene79443 | 0.84636 | 2.28E-59 | -1.69E-46 |
MS.gene055959 | MS.gene79443 | 0.823819 | 1.13E-53 | -1.69E-46 |
MS.gene056590 | MS.gene79443 | 0.806874 | 6.66E-50 | -1.69E-46 |
MS.gene056591 | MS.gene79443 | 0.806914 | 6.53E-50 | -1.69E-46 |
MS.gene057261 | MS.gene79443 | 0.807674 | 4.50E-50 | -1.69E-46 |
MS.gene057544 | MS.gene79443 | 0.812385 | 4.35E-51 | -1.69E-46 |
MS.gene058093 | MS.gene79443 | 0.806914 | 6.53E-50 | -1.69E-46 |
MS.gene058218 | MS.gene79443 | 0.807118 | 5.91E-50 | -1.69E-46 |
MS.gene059037 | MS.gene79443 | 0.812055 | 5.14E-51 | -1.69E-46 |
MS.gene059038 | MS.gene79443 | 0.807457 | 5.01E-50 | -1.69E-46 |
MS.gene059402 | MS.gene79443 | 0.835315 | 1.80E-56 | -1.69E-46 |
MS.gene059953 | MS.gene79443 | 0.817144 | 3.84E-52 | -1.69E-46 |
MS.gene059955 | MS.gene79443 | 0.843594 | 1.27E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79443.t1 | MTR_7g113050 | 90.566 | 159 | 15 | 0 | 1 | 159 | 161 | 319 | 4.63e-106 | 306 |
MS.gene79443.t1 | MTR_7g113030 | 89.937 | 159 | 16 | 0 | 1 | 159 | 161 | 319 | 5.54e-105 | 303 |
MS.gene79443.t1 | MTR_7g112615 | 89.937 | 159 | 16 | 0 | 1 | 159 | 161 | 319 | 5.94e-104 | 300 |
MS.gene79443.t1 | MTR_7g112620 | 88.679 | 159 | 18 | 0 | 1 | 159 | 161 | 319 | 2.01e-102 | 296 |
MS.gene79443.t1 | MTR_7g113020 | 86.792 | 159 | 21 | 0 | 1 | 159 | 161 | 319 | 1.61e-100 | 291 |
MS.gene79443.t1 | MTR_4g005160 | 70.440 | 159 | 46 | 1 | 2 | 159 | 164 | 322 | 5.82e-81 | 242 |
MS.gene79443.t1 | MTR_7g112960 | 66.460 | 161 | 50 | 2 | 1 | 159 | 161 | 319 | 4.26e-72 | 219 |
MS.gene79443.t1 | MTR_7g112963 | 67.081 | 161 | 49 | 2 | 1 | 159 | 161 | 319 | 1.35e-70 | 216 |
MS.gene79443.t1 | MTR_7g112970 | 66.038 | 159 | 51 | 2 | 1 | 159 | 161 | 316 | 2.43e-70 | 215 |
MS.gene79443.t1 | MTR_7g112910 | 63.750 | 160 | 25 | 3 | 1 | 159 | 68 | 195 | 9.09e-61 | 186 |
MS.gene79443.t1 | MTR_7g108825 | 58.228 | 158 | 65 | 1 | 2 | 159 | 161 | 317 | 1.49e-59 | 187 |
MS.gene79443.t1 | MTR_4g120240 | 55.975 | 159 | 69 | 1 | 1 | 159 | 198 | 355 | 5.29e-58 | 184 |
MS.gene79443.t1 | MTR_7g112615 | 87.179 | 78 | 10 | 0 | 1 | 78 | 161 | 238 | 3.91e-45 | 148 |
MS.gene79443.t1 | MTR_7g113050 | 87.179 | 78 | 10 | 0 | 1 | 78 | 161 | 238 | 5.42e-45 | 147 |
MS.gene79443.t1 | MTR_7g113010 | 60.656 | 122 | 44 | 2 | 2 | 121 | 162 | 281 | 1.16e-43 | 152 |
MS.gene79443.t1 | MTR_8g076680 | 41.772 | 158 | 89 | 2 | 2 | 159 | 163 | 317 | 2.06e-33 | 120 |
MS.gene79443.t1 | MTR_7g108825 | 51.948 | 77 | 36 | 1 | 2 | 78 | 161 | 236 | 7.72e-18 | 77.8 |
MS.gene79443.t1 | MTR_2g090240 | 36.585 | 123 | 70 | 4 | 37 | 158 | 195 | 310 | 1.13e-17 | 78.2 |
MS.gene79443.t1 | MTR_2g090245 | 31.875 | 160 | 99 | 5 | 2 | 158 | 158 | 310 | 1.43e-16 | 75.1 |
MS.gene79443.t1 | MTR_4g089060 | 36.066 | 122 | 70 | 4 | 38 | 158 | 195 | 309 | 9.33e-14 | 67.4 |
MS.gene79443.t1 | MTR_4g089060 | 36.066 | 122 | 70 | 4 | 38 | 158 | 222 | 336 | 1.24e-13 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79443.t1 | AT3G05600 | 50.932 | 161 | 77 | 2 | 1 | 159 | 164 | 324 | 1.26e-54 | 175 |
MS.gene79443.t1 | AT4G02340 | 52.830 | 159 | 73 | 2 | 1 | 159 | 160 | 316 | 5.28e-53 | 171 |
MS.gene79443.t1 | AT4G15960 | 49.057 | 159 | 80 | 1 | 1 | 159 | 217 | 374 | 2.13e-47 | 157 |
MS.gene79443.t1 | AT2G26740 | 57.862 | 159 | 66 | 1 | 1 | 159 | 164 | 321 | 3.33e-47 | 155 |
MS.gene79443.t1 | AT2G26750 | 55.975 | 159 | 69 | 1 | 1 | 159 | 163 | 320 | 2.25e-45 | 151 |
MS.gene79443.t1 | AT4G15955 | 52.500 | 120 | 57 | 0 | 40 | 159 | 185 | 304 | 1.47e-38 | 133 |
MS.gene79443.t1 | AT3G51000 | 39.521 | 167 | 82 | 4 | 2 | 159 | 163 | 319 | 3.02e-32 | 117 |
MS.gene79443.t1 | AT3G05600 | 46.250 | 80 | 41 | 2 | 1 | 78 | 164 | 243 | 6.90e-17 | 75.1 |
Find 43 sgRNAs with CRISPR-Local
Find 58 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 3.1:+15576935 | None:intergenic |
GCCCTCACAGCTCGGAAAAC+TGG | 0.342370 | 3.1:-15576962 | MS.gene79443:CDS |
ATATTTCCCAAGGGAGAGTA+TGG | 0.351665 | 3.1:-15576932 | MS.gene79443:CDS |
GTCTCCAAATTTGAGAAAAC+AGG | 0.360081 | 3.1:-15576839 | MS.gene79443:CDS |
GACAATCACTTCTTCCAGAT+TGG | 0.360761 | 3.1:+15576411 | None:intergenic |
CCCAAGGGAGAGTATGGAAC+TGG | 0.372941 | 3.1:-15576926 | MS.gene79443:CDS |
GGTAAGGTGTCAGGAGTATC+CGG | 0.384128 | 3.1:+15576896 | None:intergenic |
AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 3.1:+15576887 | None:intergenic |
TTTGAGAAAACAGGCTTCAC+TGG | 0.397561 | 3.1:-15576830 | MS.gene79443:CDS |
GAAGAAGTGATTGTCCAAAA+AGG | 0.401350 | 3.1:-15576403 | MS.gene79443:CDS |
CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 3.1:-15576889 | MS.gene79443:CDS |
TTACTTGTATTGCAGAAATT+GGG | 0.423076 | 3.1:-15576566 | MS.gene79443:intron |
GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 3.1:-15576508 | MS.gene79443:CDS |
CAAGGAAGATGTGCCCAATC+TGG | 0.434486 | 3.1:-15576425 | MS.gene79443:CDS |
ACAATCACTTCTTCCAGATT+GGG | 0.454843 | 3.1:+15576412 | None:intergenic |
CCCAGTTCCATACTCTCCCT+TGG | 0.465033 | 3.1:+15576925 | None:intergenic |
ATACACCTCACTAAACTTGA+AGG | 0.465604 | 3.1:-15576470 | MS.gene79443:CDS |
TTCTGTAAGCCAAGAGGGTA+AGG | 0.471828 | 3.1:+15576880 | None:intergenic |
CCAGTTCCATACTCTCCCTT+GGG | 0.505497 | 3.1:+15576926 | None:intergenic |
AGGCAAAATGGAAGCTGAGA+TGG | 0.540634 | 3.1:-15577017 | None:intergenic |
TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 3.1:+15576938 | None:intergenic |
GAGCTGATGGCACCATGGAA+TGG | 0.569405 | 3.1:-15576544 | MS.gene79443:CDS |
GAAGGAATATATCCATGGTG+GGG | 0.572924 | 3.1:-15576452 | MS.gene79443:CDS |
TGAAGGAATATATCCATGGT+GGG | 0.577926 | 3.1:-15576453 | MS.gene79443:CDS |
TCATCTTCTGTAAGCCAAGA+GGG | 0.578236 | 3.1:+15576875 | None:intergenic |
TCACCTGTAATGAATTTCAC+AGG | 0.581259 | 3.1:+15576505 | None:intergenic |
TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 3.1:-15576942 | MS.gene79443:CDS |
AAGGAATATATCCATGGTGG+GGG | 0.588801 | 3.1:-15576451 | MS.gene79443:CDS |
GAAGCTGAGATGGCTGAAGT+TGG | 0.590883 | 3.1:-15577007 | MS.gene79443:CDS |
ATGGAATGGAGTGAAAATCA+AGG | 0.596236 | 3.1:-15576530 | MS.gene79443:CDS |
GTATGGAACTGGGTTCGACC+CGG | 0.604103 | 3.1:-15576915 | MS.gene79443:CDS |
GAGAAAACAGGCTTCACTGG+AGG | 0.606396 | 3.1:-15576827 | MS.gene79443:CDS |
AACTTGAAGGAATATATCCA+TGG | 0.609632 | 3.1:-15576457 | MS.gene79443:CDS |
CCAAGGGAGAGTATGGAACT+GGG | 0.609678 | 3.1:-15576925 | MS.gene79443:CDS |
TTGCAGAAATTGGGAGCTGA+TGG | 0.610067 | 3.1:-15576557 | MS.gene79443:intron |
ATTTGGAGACATAATAAGCA+AGG | 0.610704 | 3.1:+15576852 | None:intergenic |
GTAAGGTGTCAGGAGTATCC+GGG | 0.618284 | 3.1:+15576897 | None:intergenic |
TTGAAGGAATATATCCATGG+TGG | 0.621968 | 3.1:-15576454 | MS.gene79443:CDS |
CAACAATCAAGAAGCAGCAG+AGG | 0.622672 | 3.1:-15576368 | MS.gene79443:CDS |
ATATTCCTTCAAGTTTAGTG+AGG | 0.634199 | 3.1:+15576465 | None:intergenic |
ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 3.1:-15576549 | MS.gene79443:CDS |
GTCATCTTCTGTAAGCCAAG+AGG | 0.661237 | 3.1:+15576874 | None:intergenic |
GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 3.1:-15576941 | MS.gene79443:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTATTGTCAACATATATTTA+TGG | + | chr3.1:15576600-15576619 | None:intergenic | 20.0% |
!!! | TATATGTTGACAATACTTTT+TGG | - | chr3.1:15576604-15576623 | MS.gene79443:intron | 20.0% |
! | AATATAACATGTATACGTGT+CGG | + | chr3.1:15576718-15576737 | None:intergenic | 25.0% |
! | ATTACTTGTATTGCAGAAAT+TGG | - | chr3.1:15576770-15576789 | MS.gene79443:intron | 25.0% |
! | TTACTTGTATTGCAGAAATT+GGG | - | chr3.1:15576771-15576790 | MS.gene79443:intron | 25.0% |
AACTTGAAGGAATATATCCA+TGG | - | chr3.1:15576880-15576899 | MS.gene79443:CDS | 30.0% | |
ATTTGGAGACATAATAAGCA+AGG | + | chr3.1:15576488-15576507 | None:intergenic | 30.0% | |
! | ATATTCCTTCAAGTTTAGTG+AGG | + | chr3.1:15576875-15576894 | None:intergenic | 30.0% |
ACAATCACTTCTTCCAGATT+GGG | + | chr3.1:15576928-15576947 | None:intergenic | 35.0% | |
ATACACCTCACTAAACTTGA+AGG | - | chr3.1:15576867-15576886 | MS.gene79443:CDS | 35.0% | |
ATGGAATGGAGTGAAAATCA+AGG | - | chr3.1:15576807-15576826 | MS.gene79443:CDS | 35.0% | |
GAAGAAGTGATTGTCCAAAA+AGG | - | chr3.1:15576934-15576953 | MS.gene79443:CDS | 35.0% | |
GTCTCCAAATTTGAGAAAAC+AGG | - | chr3.1:15576498-15576517 | MS.gene79443:CDS | 35.0% | |
TATTTATGGAAAACAACCCG+AGG | + | chr3.1:15576586-15576605 | None:intergenic | 35.0% | |
TCACCTGTAATGAATTTCAC+AGG | + | chr3.1:15576835-15576854 | None:intergenic | 35.0% | |
TGAAGGAATATATCCATGGT+GGG | - | chr3.1:15576884-15576903 | MS.gene79443:CDS | 35.0% | |
TTGAAGGAATATATCCATGG+TGG | - | chr3.1:15576883-15576902 | MS.gene79443:CDS | 35.0% | |
! | GAAGCCTGTTTTCTCAAATT+TGG | + | chr3.1:15576505-15576524 | None:intergenic | 35.0% |
! | TTGATTTTCACTCCATTCCA+TGG | + | chr3.1:15576808-15576827 | None:intergenic | 35.0% |
! | TTTTGTTCTTTGTGCTACCT+CGG | - | chr3.1:15576566-15576585 | MS.gene79443:intron | 35.0% |
AAGGAATATATCCATGGTGG+GGG | - | chr3.1:15576886-15576905 | MS.gene79443:CDS | 40.0% | |
AGTGATTGTCCAAAAAGGAG+TGG | - | chr3.1:15576939-15576958 | MS.gene79443:CDS | 40.0% | |
ATATTTCCCAAGGGAGAGTA+TGG | - | chr3.1:15576405-15576424 | MS.gene79443:CDS | 40.0% | |
GAAGGAATATATCCATGGTG+GGG | - | chr3.1:15576885-15576904 | MS.gene79443:CDS | 40.0% | |
GACAATCACTTCTTCCAGAT+TGG | + | chr3.1:15576929-15576948 | None:intergenic | 40.0% | |
GTGCCTGTGAAATTCATTAC+AGG | - | chr3.1:15576829-15576848 | MS.gene79443:CDS | 40.0% | |
TAAAAAATGCCCTCACAGCT+CGG | - | chr3.1:15576367-15576386 | MS.gene79443:CDS | 40.0% | |
TACTCTCCCTTGGGAAATAT+TGG | + | chr3.1:15576405-15576424 | None:intergenic | 40.0% | |
TCATCTTCTGTAAGCCAAGA+GGG | + | chr3.1:15576465-15576484 | None:intergenic | 40.0% | |
TTTGAGAAAACAGGCTTCAC+TGG | - | chr3.1:15576507-15576526 | MS.gene79443:CDS | 40.0% | |
TTTGTTCTTTGTGCTACCTC+GGG | - | chr3.1:15576567-15576586 | MS.gene79443:intron | 40.0% | |
CAACAATCAAGAAGCAGCAG+AGG | - | chr3.1:15576969-15576988 | MS.gene79443:CDS | 45.0% | |
GGTCCTCCAATATTTCCCAA+GGG | - | chr3.1:15576396-15576415 | MS.gene79443:CDS | 45.0% | |
GTCATCTTCTGTAAGCCAAG+AGG | + | chr3.1:15576466-15576485 | None:intergenic | 45.0% | |
TCTCCCTTGGGAAATATTGG+AGG | + | chr3.1:15576402-15576421 | None:intergenic | 45.0% | |
TGGTCCTCCAATATTTCCCA+AGG | - | chr3.1:15576395-15576414 | MS.gene79443:CDS | 45.0% | |
TTCTGTAAGCCAAGAGGGTA+AGG | + | chr3.1:15576460-15576479 | None:intergenic | 45.0% | |
TTGCAGAAATTGGGAGCTGA+TGG | - | chr3.1:15576780-15576799 | MS.gene79443:intron | 45.0% | |
CAAGGAAGATGTGCCCAATC+TGG | - | chr3.1:15576912-15576931 | MS.gene79443:CDS | 50.0% | |
CCAGTTCCATACTCTCCCTT+GGG | + | chr3.1:15576414-15576433 | None:intergenic | 50.0% | |
GAAGCTGAGATGGCTGAAGT+TGG | - | chr3.1:15576330-15576349 | MS.gene79443:CDS | 50.0% | |
GAGAAAACAGGCTTCACTGG+AGG | - | chr3.1:15576510-15576529 | MS.gene79443:CDS | 50.0% | |
! | ACCAGTTTTCCGAGCTGTGA+GGG | + | chr3.1:15576379-15576398 | None:intergenic | 50.0% |
! | CCAAGGGAGAGTATGGAACT+GGG | - | chr3.1:15576412-15576431 | MS.gene79443:CDS | 50.0% |
! | TATCCATGGTGGGGGATTCA+AGG | - | chr3.1:15576894-15576913 | MS.gene79443:CDS | 50.0% |
! | TGTAGTGCGCCACTCCTTTT+TGG | + | chr3.1:15576951-15576970 | None:intergenic | 50.0% |
!! | GGTAAGGTGTCAGGAGTATC+CGG | + | chr3.1:15576444-15576463 | None:intergenic | 50.0% |
!! | GTAAGGTGTCAGGAGTATCC+GGG | + | chr3.1:15576443-15576462 | None:intergenic | 50.0% |
ATTGGGAGCTGATGGCACCA+TGG | - | chr3.1:15576788-15576807 | MS.gene79443:intron | 55.0% | |
CCCAGTTCCATACTCTCCCT+TGG | + | chr3.1:15576415-15576434 | None:intergenic | 55.0% | |
CTCCTGACACCTTACCCTCT+TGG | - | chr3.1:15576448-15576467 | MS.gene79443:CDS | 55.0% | |
CTTCCTTGAATCCCCCACCA+TGG | + | chr3.1:15576900-15576919 | None:intergenic | 55.0% | |
GAGCTGATGGCACCATGGAA+TGG | - | chr3.1:15576793-15576812 | MS.gene79443:intron | 55.0% | |
GTATGGAACTGGGTTCGACC+CGG | - | chr3.1:15576422-15576441 | MS.gene79443:CDS | 55.0% | |
! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr3.1:15576453-15576472 | None:intergenic | 55.0% |
! | CCCAAGGGAGAGTATGGAAC+TGG | - | chr3.1:15576411-15576430 | MS.gene79443:CDS | 55.0% |
! | GACCAGTTTTCCGAGCTGTG+AGG | + | chr3.1:15576380-15576399 | None:intergenic | 55.0% |
GCCCTCACAGCTCGGAAAAC+TGG | - | chr3.1:15576375-15576394 | MS.gene79443:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 15576327 | 15577032 | 15576327 | ID=MS.gene79443 |
chr3.1 | mRNA | 15576327 | 15577032 | 15576327 | ID=MS.gene79443.t1;Parent=MS.gene79443 |
chr3.1 | exon | 15576800 | 15577032 | 15576800 | ID=MS.gene79443.t1.exon1;Parent=MS.gene79443.t1 |
chr3.1 | CDS | 15576800 | 15577032 | 15576800 | ID=cds.MS.gene79443.t1;Parent=MS.gene79443.t1 |
chr3.1 | exon | 15576327 | 15576573 | 15576327 | ID=MS.gene79443.t1.exon2;Parent=MS.gene79443.t1 |
chr3.1 | CDS | 15576327 | 15576573 | 15576327 | ID=cds.MS.gene79443.t1;Parent=MS.gene79443.t1 |
Gene Sequence |
Protein sequence |