Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79448.t1 | RHN66052.1 | 97.9 | 512 | 11 | 0 | 57 | 568 | 96 | 607 | 1.30E-197 | 699.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79448.t1 | Q9FNQ0 | 61.4 | 360 | 124 | 6 | 111 | 465 | 168 | 517 | 1.8e-104 | 381.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79448.t1 | A0A396IKI1 | 97.9 | 512 | 11 | 0 | 57 | 568 | 96 | 607 | 9.2e-198 | 699.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049666 | MS.gene79448 | 0.824426 | 8.12E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene79448 | 0.817626 | 2.99E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene79448 | 0.808076 | 3.70E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene79448 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene79448 | 0.804144 | 2.49E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene79448 | 0.815069 | 1.12E-51 | -1.69E-46 |
| MS.gene053272 | MS.gene79448 | -0.822711 | 2.05E-53 | -1.69E-46 |
| MS.gene053541 | MS.gene79448 | 0.810949 | 8.94E-51 | -1.69E-46 |
| MS.gene053542 | MS.gene79448 | 0.81918 | 1.33E-52 | -1.69E-46 |
| MS.gene054142 | MS.gene79448 | 0.82644 | 2.71E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene79448 | 0.818973 | 1.48E-52 | -1.69E-46 |
| MS.gene056254 | MS.gene79448 | 0.802172 | 6.36E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene79448 | 0.81137 | 7.24E-51 | -1.69E-46 |
| MS.gene057102 | MS.gene79448 | 0.826889 | 2.12E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene79448 | 0.81287 | 3.41E-51 | -1.69E-46 |
| MS.gene058008 | MS.gene79448 | 0.825063 | 5.75E-54 | -1.69E-46 |
| MS.gene058009 | MS.gene79448 | 0.820532 | 6.53E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene79448 | 0.828822 | 7.26E-55 | -1.69E-46 |
| MS.gene058783 | MS.gene79448 | 0.834028 | 3.80E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene79448 | -0.815118 | 1.09E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene79448 | 0.82936 | 5.38E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene79448 | 0.838782 | 2.34E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene79448 | 0.82605 | 3.36E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79448 | MS.gene36746 | PPI |
| MS.gene79448 | MS.gene23694 | PPI |
| MS.gene051698 | MS.gene79448 | PPI |
| MS.gene072220 | MS.gene79448 | PPI |
| MS.gene011065 | MS.gene79448 | PPI |
| MS.gene36633 | MS.gene79448 | PPI |
| MS.gene072221 | MS.gene79448 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79448.t1 | MTR_3g024380 | 97.540 | 569 | 13 | 1 | 1 | 568 | 39 | 607 | 0.0 | 1115 |
| MS.gene79448.t1 | MTR_3g024360 | 97.715 | 569 | 12 | 1 | 1 | 568 | 39 | 607 | 0.0 | 1114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79448.t1 | AT5G61150 | 54.593 | 577 | 225 | 16 | 13 | 567 | 61 | 622 | 3.06e-152 | 451 |
| MS.gene79448.t1 | AT5G61150 | 54.404 | 579 | 225 | 16 | 13 | 567 | 61 | 624 | 6.73e-152 | 450 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGTAACTGATGAATT+TGG | 0.177630 | 3.4:-16823663 | MS.gene79448:CDS |
| CGATGGGTTGTTGGTTTCTT+AGG | 0.186028 | 3.4:+16820562 | None:intergenic |
| TGATGATGAAGAGGAGGATA+TGG | 0.211401 | 3.4:-16824454 | MS.gene79448:CDS |
| GACTCTTCTCTCTCATCATC+TGG | 0.245899 | 3.4:+16821852 | None:intergenic |
| CAAAAGAGTAAGAATTTAAA+AGG | 0.255676 | 3.4:-16820631 | MS.gene79448:CDS |
| AACGACATCCCTACGCTTAC+TGG | 0.260769 | 3.4:+16827406 | None:intergenic |
| AGTCTGATCTTTGTCTTCTC+TGG | 0.262897 | 3.4:+16824524 | None:intergenic |
| AATTCACCTTTCCATGTCTA+AGG | 0.291409 | 3.4:+16822733 | None:intergenic |
| AACACAAGGCAGACCTTTCC+TGG | 0.291986 | 3.4:+16824121 | None:intergenic |
| CCGGAAATTCGTGATGTATT+TGG | 0.297525 | 3.4:-16824483 | MS.gene79448:CDS |
| CCAAATACATCACGAATTTC+CGG | 0.297709 | 3.4:+16824483 | None:intergenic |
| CAAAGATCAGACTCATGATT+TGG | 0.303405 | 3.4:-16824514 | MS.gene79448:CDS |
| AGGCTGAAAGTCAGACTATC+AGG | 0.307554 | 3.4:-16822383 | MS.gene79448:CDS |
| TGGATCAACTCCCATGATAT+TGG | 0.314016 | 3.4:+16823722 | None:intergenic |
| AGAATCAAACCCCTTCCTTT+TGG | 0.325587 | 3.4:+16820603 | None:intergenic |
| ACGCTGATTGTAATCATCTT+TGG | 0.335207 | 3.4:+16827436 | None:intergenic |
| GGAAGCATTCAGTTATTGAT+TGG | 0.350831 | 3.4:-16822813 | MS.gene79448:CDS |
| AGGAGGCGTCAACTTTCTCC+TGG | 0.360444 | 3.4:-16822300 | MS.gene79448:CDS |
| TGAAGGAGAAGTTGAGGGGC+AGG | 0.380719 | 3.4:-16827558 | MS.gene79448:CDS |
| CGTCCACCTCCAGCTCTTCC+AGG | 0.386236 | 3.4:-16824139 | MS.gene79448:CDS |
| GATGATGAAGAGGAGGATAT+GGG | 0.386378 | 3.4:-16824453 | MS.gene79448:CDS |
| AGAAGTTGAGGGGCAGGGAG+AGG | 0.401701 | 3.4:-16827552 | MS.gene79448:CDS |
| GTCATTCGGCGATGGGTTGT+TGG | 0.403588 | 3.4:+16820553 | None:intergenic |
| GACCTACGAGGGATGCTCTT+TGG | 0.404064 | 3.4:+16821921 | None:intergenic |
| GTTTAAAGTTTCCAATATCA+TGG | 0.404176 | 3.4:-16823733 | MS.gene79448:CDS |
| AGTGAAGGTGAGAGAGAGGT+TGG | 0.405162 | 3.4:-16827512 | MS.gene79448:CDS |
| CTTACAGATGTTGTGCCATC+AGG | 0.408963 | 3.4:+16823582 | None:intergenic |
| GCAGGATGAAGGAGAGGGAG+GGG | 0.417436 | 3.4:-16827603 | None:intergenic |
| TCATAATTCGTTTCTCTGCT+CGG | 0.419109 | 3.4:+16822046 | None:intergenic |
| CAAATACATCACGAATTTCC+GGG | 0.420870 | 3.4:+16824484 | None:intergenic |
| GAAGCATTCAGTTATTGATT+GGG | 0.436645 | 3.4:-16822812 | MS.gene79448:CDS |
| AAAGGCCTCGCTCTCGTATG+AGG | 0.438637 | 3.4:-16821797 | MS.gene79448:CDS |
| GTCTGATCTTTGTCTTCTCT+GGG | 0.439102 | 3.4:+16824525 | None:intergenic |
| GATGAAGGAGAGGGAGGGGT+AGG | 0.441542 | 3.4:-16827599 | MS.gene79448:CDS |
| GGAAGAAGAGAGTGAAGGTA+GGG | 0.445901 | 3.4:-16827477 | MS.gene79448:CDS |
| TGGATCTGATGATGATGAAC+AGG | 0.450572 | 3.4:-16827378 | MS.gene79448:CDS |
| TGGAAGAAGAGAGTGAAGGT+AGG | 0.450961 | 3.4:-16827478 | MS.gene79448:CDS |
| AAAGCAATGCTCGCTTTGTA+AGG | 0.456005 | 3.4:-16822845 | MS.gene79448:CDS |
| CTGGGTAACCCACTTGGTGC+CGG | 0.457697 | 3.4:+16821871 | None:intergenic |
| ACGAATTATGAATGCTAAGA+AGG | 0.462052 | 3.4:-16822034 | MS.gene79448:intron |
| GAGGGTGAAGGAGAAGTTGA+GGG | 0.462675 | 3.4:-16827563 | MS.gene79448:CDS |
| AGAAGAGAGTGAAGGTAGGG+GGG | 0.466996 | 3.4:-16827474 | MS.gene79448:CDS |
| AGAGAGTGAAGGTGAGAGAG+AGG | 0.471012 | 3.4:-16827516 | MS.gene79448:CDS |
| AGAACAAGAAAATGATGCTT+CGG | 0.474694 | 3.4:-16821724 | MS.gene79448:CDS |
| GAGTAAGAATTTAAAAGGTA+AGG | 0.475961 | 3.4:-16820626 | MS.gene79448:CDS |
| CATCATCTGGGTAACCCACT+TGG | 0.477731 | 3.4:+16821865 | None:intergenic |
| ACATAATTGTCATTCGGCGA+TGG | 0.478658 | 3.4:+16820545 | None:intergenic |
| AAGGGGTTTGATTCTGATGA+AGG | 0.479724 | 3.4:-16820595 | MS.gene79448:CDS |
| GAAGAAGAGAGTGAAGGTAG+GGG | 0.484413 | 3.4:-16827476 | MS.gene79448:CDS |
| CCTTGTCGTCGAATTCTCAT+CGG | 0.488466 | 3.4:-16822586 | MS.gene79448:CDS |
| TCTTACTCGTAAGCGCGAAA+AGG | 0.491879 | 3.4:-16822349 | MS.gene79448:CDS |
| ACTTGGGCCACCATTGGAGT+TGG | 0.492300 | 3.4:-16824173 | MS.gene79448:CDS |
| CAGACCTTTCCTGGAAGAGC+TGG | 0.492331 | 3.4:+16824130 | None:intergenic |
| TTCATCAGCAAGTATATCCT+CGG | 0.493150 | 3.4:+16824252 | None:intergenic |
| ATTTAAAAGGTAAGGCCAAA+AGG | 0.493936 | 3.4:-16820618 | MS.gene79448:CDS |
| AGAGGGTGAAGGAGAAGTTG+AGG | 0.494925 | 3.4:-16827564 | MS.gene79448:CDS |
| AAGAAGAGAGTGAAGGTAGG+GGG | 0.497291 | 3.4:-16827475 | MS.gene79448:CDS |
| CATAATTGTCATTCGGCGAT+GGG | 0.499895 | 3.4:+16820546 | None:intergenic |
| CGTAGGGATGTCGTTGAAAG+TGG | 0.500557 | 3.4:-16827398 | MS.gene79448:CDS |
| TGGGTAACCCACTTGGTGCC+GGG | 0.501264 | 3.4:+16821872 | None:intergenic |
| TTTAGAGGATGCTTTGGATG+AGG | 0.502707 | 3.4:-16822274 | MS.gene79448:intron |
| TAAGCCACTTGGGCCACCAT+TGG | 0.504404 | 3.4:-16824179 | MS.gene79448:CDS |
| TTGCAGGATGAAGGAGAGGG+AGG | 0.504951 | 3.4:-16827605 | None:intergenic |
| TATGGGGTATGCAGCTCAGC+AGG | 0.507648 | 3.4:-16824436 | MS.gene79448:CDS |
| GTTGTTGGTTTCTTAGGAGG+AGG | 0.507805 | 3.4:+16820568 | None:intergenic |
| TTTAAAGTTTCCAATATCAT+GGG | 0.510569 | 3.4:-16823732 | MS.gene79448:CDS |
| AGATATCCTGCGGAGGAGGA+AGG | 0.511585 | 3.4:-16824298 | MS.gene79448:CDS |
| TGCAGGATGAAGGAGAGGGA+GGG | 0.511951 | 3.4:-16827604 | None:intergenic |
| TCCAAATTCATCAGTTACAA+AGG | 0.512124 | 3.4:+16823662 | None:intergenic |
| CGCTTTGTAAGGTGGTCTGA+TGG | 0.512150 | 3.4:-16822834 | MS.gene79448:CDS |
| GGTAGGGCAAGAAGTTGAAG+AGG | 0.514949 | 3.4:-16827582 | MS.gene79448:CDS |
| AAAGATGTGCTTGATCATGC+TGG | 0.515881 | 3.4:+16822757 | None:intergenic |
| GATATCCTGCGGAGGAGGAA+GGG | 0.517353 | 3.4:-16824297 | MS.gene79448:CDS |
| AAACAAGAAGCGCATACGCT+TGG | 0.520008 | 3.4:-16823640 | MS.gene79448:CDS |
| ATGAAGGAGAGGGAGGGGTA+GGG | 0.523344 | 3.4:-16827598 | MS.gene79448:CDS |
| AGAGGTTGGTGATCAGAGAG+TGG | 0.525201 | 3.4:-16827498 | MS.gene79448:CDS |
| GAAGGAGAAGTTGAGGGGCA+GGG | 0.526782 | 3.4:-16827557 | MS.gene79448:CDS |
| ACCTCCAGCTCTTCCAGGAA+AGG | 0.528540 | 3.4:-16824134 | MS.gene79448:intron |
| ACTCTTCTCTCTCATCATCT+GGG | 0.528829 | 3.4:+16821853 | None:intergenic |
| AGTTGACGCCTCCTCTCAGT+TGG | 0.530113 | 3.4:+16822309 | None:intergenic |
| AAAGGTAAGGCCAAAAGGAA+GGG | 0.530659 | 3.4:-16820613 | MS.gene79448:CDS |
| TGTCAGACATAATTGTCATT+CGG | 0.533240 | 3.4:+16820539 | None:intergenic |
| TCATGATTTGGATTCTGCCC+CGG | 0.534074 | 3.4:-16824502 | MS.gene79448:CDS |
| TGGGTTGTTGGTTTCTTAGG+AGG | 0.534824 | 3.4:+16820565 | None:intergenic |
| GTAGAGATATCCTGCGGAGG+AGG | 0.536010 | 3.4:-16824302 | MS.gene79448:intron |
| AACTCCAATGGTGGCCCAAG+TGG | 0.536324 | 3.4:+16824175 | None:intergenic |
| AGAATTCGACGACAAGGAAG+AGG | 0.537175 | 3.4:+16822592 | None:intergenic |
| AAAAGGTAAGGCCAAAAGGA+AGG | 0.537691 | 3.4:-16820614 | MS.gene79448:CDS |
| TAACTGCAATTGTTGACTCA+AGG | 0.540824 | 3.4:-16822559 | MS.gene79448:CDS |
| TGAGGCAGAATATGAGGATG+AGG | 0.541830 | 3.4:-16821763 | MS.gene79448:CDS |
| AGTTCTTGACGTATCTGAGC+AGG | 0.545394 | 3.4:-16822784 | MS.gene79448:CDS |
| ATGATGAAGAGGAGGATATG+GGG | 0.546074 | 3.4:-16824452 | MS.gene79448:CDS |
| AGAACAATATTGTACGTTGG+AGG | 0.547091 | 3.4:-16823617 | MS.gene79448:CDS |
| GGAGGCGTCAACTTTCTCCT+GGG | 0.547641 | 3.4:-16822299 | MS.gene79448:CDS |
| GGTATTGCAGGATGAAGGAG+AGG | 0.549776 | 3.4:-16827609 | None:intergenic |
| TTTCCTGGAAGAGCTGGAGG+TGG | 0.550435 | 3.4:+16824136 | None:intergenic |
| AGAAAATGATGCTTCGGATG+AGG | 0.553139 | 3.4:-16821718 | MS.gene79448:CDS |
| AAGGTAAGGCCAAAAGGAAG+GGG | 0.555300 | 3.4:-16820612 | MS.gene79448:CDS |
| CAAGAAGTTGAAGAGGGTGA+AGG | 0.556138 | 3.4:-16827575 | MS.gene79448:CDS |
| TGATTCTGAGGCAGAATATG+AGG | 0.556925 | 3.4:-16821769 | MS.gene79448:CDS |
| TAGCTCCCTTCCTCCTCCGC+AGG | 0.559719 | 3.4:+16824292 | None:intergenic |
| TCCCACCAGCAAAATCCTCC+CGG | 0.563107 | 3.4:-16821890 | MS.gene79448:CDS |
| ACCTTTCCTGGAAGAGCTGG+AGG | 0.563803 | 3.4:+16824133 | None:intergenic |
| AAGACGATGAGGAAGAAGAA+AGG | 0.567710 | 3.4:-16821815 | MS.gene79448:CDS |
| GAAGAAGAAGCAGAGAGTGA+AGG | 0.568085 | 3.4:-16827527 | MS.gene79448:CDS |
| GTAAGCGCGAAAAGGTGAAT+CGG | 0.570993 | 3.4:-16822341 | MS.gene79448:CDS |
| TCATCAGCAAGTATATCCTC+GGG | 0.580662 | 3.4:+16824253 | None:intergenic |
| AAAACTAAAGATAAGCCACT+TGG | 0.583846 | 3.4:-16824190 | MS.gene79448:CDS |
| AGAGCATCAGTATGAATCAG+AGG | 0.587246 | 3.4:-16824230 | MS.gene79448:CDS |
| TGTTGACTCAAGGCAAAGGA+AGG | 0.588843 | 3.4:-16822549 | MS.gene79448:CDS |
| GTATTGCAGGATGAAGGAGA+GGG | 0.588913 | 3.4:-16827608 | None:intergenic |
| TAGAACACAGCGTCACTATG+AGG | 0.593921 | 3.4:-16822088 | MS.gene79448:CDS |
| AGGGTGAAGGAGAAGTTGAG+GGG | 0.595987 | 3.4:-16827562 | MS.gene79448:CDS |
| AGAGTGGAAGAAGAGAGTGA+AGG | 0.597932 | 3.4:-16827482 | MS.gene79448:CDS |
| GTAGGGCAAGAAGTTGAAGA+GGG | 0.600226 | 3.4:-16827581 | MS.gene79448:CDS |
| AAGGCCTCGCTCTCGTATGA+GGG | 0.604558 | 3.4:-16821796 | MS.gene79448:CDS |
| AGAGCTGGAGGTGGACGTAG+TGG | 0.608598 | 3.4:+16824145 | None:intergenic |
| AAAATCCTCCCGGCACCAAG+TGG | 0.609142 | 3.4:-16821880 | MS.gene79448:CDS |
| AGTGGAATCTCCAACTCCAA+TGG | 0.611411 | 3.4:+16824163 | None:intergenic |
| CAGGGAATTCTGCAATCACA+AGG | 0.612303 | 3.4:-16822644 | MS.gene79448:CDS |
| GCAATGCTCGCTTTGTAAGG+TGG | 0.615936 | 3.4:-16822842 | MS.gene79448:CDS |
| TTTATGGAATTCTAGTCACA+GGG | 0.616797 | 3.4:-16821945 | MS.gene79448:intron |
| AAGATGTGCTTGATCATGCT+GGG | 0.617257 | 3.4:+16822758 | None:intergenic |
| TATGAGGGATGATGATTCTG+AGG | 0.620873 | 3.4:-16821781 | MS.gene79448:CDS |
| GTGTCGTTACCAGTAAGCGT+AGG | 0.621779 | 3.4:-16827415 | MS.gene79448:CDS |
| TGTCGTTACCAGTAAGCGTA+GGG | 0.622629 | 3.4:-16827414 | MS.gene79448:CDS |
| TGAAAAGAGCTTGAGACCCG+AGG | 0.623003 | 3.4:-16824269 | MS.gene79448:CDS |
| TTCGGATGAGGACGAAGATG+AGG | 0.623505 | 3.4:-16821706 | MS.gene79448:intron |
| TGGAGAACAATATTGTACGT+TGG | 0.625363 | 3.4:-16823620 | MS.gene79448:CDS |
| CAATTGTTGACTCAAGGCAA+AGG | 0.626176 | 3.4:-16822553 | MS.gene79448:CDS |
| AATCACAAGGACAGCTATCG+AGG | 0.634431 | 3.4:-16822631 | MS.gene79448:CDS |
| AAATCCTCCCGGCACCAAGT+GGG | 0.639942 | 3.4:-16821879 | MS.gene79448:CDS |
| GGAATCTCCAACTCCAATGG+TGG | 0.639997 | 3.4:+16824166 | None:intergenic |
| GGCTGAAAGTCAGACTATCA+GGG | 0.640361 | 3.4:-16822382 | MS.gene79448:CDS |
| GAATTCGACGACAAGGAAGA+GGG | 0.641254 | 3.4:+16822593 | None:intergenic |
| AGGAAAGTCACAAATCCTGA+TGG | 0.643610 | 3.4:-16823597 | MS.gene79448:CDS |
| GGAAATATGCTCCAACTGAG+AGG | 0.643716 | 3.4:-16822320 | MS.gene79448:CDS |
| AAACTAAAGATAAGCCACTT+GGG | 0.644064 | 3.4:-16824189 | MS.gene79448:CDS |
| CCGATGAGAATTCGACGACA+AGG | 0.652415 | 3.4:+16822586 | None:intergenic |
| GCATCAGTATGAATCAGAGG+AGG | 0.652612 | 3.4:-16824227 | MS.gene79448:CDS |
| TACAGACATTGATCCTGAGA+GGG | 0.652796 | 3.4:-16822504 | MS.gene79448:CDS |
| AATATGCTCCAACTGAGAGG+AGG | 0.659533 | 3.4:-16822317 | MS.gene79448:CDS |
| ATATGAAACTGAAGACGATG+AGG | 0.660309 | 3.4:-16821826 | MS.gene79448:CDS |
| TTACAGACATTGATCCTGAG+AGG | 0.665584 | 3.4:-16822505 | MS.gene79448:CDS |
| AAATACATCACGAATTTCCG+GGG | 0.669442 | 3.4:+16824485 | None:intergenic |
| TCATCCCTCATACGAGAGCG+AGG | 0.670421 | 3.4:+16821792 | None:intergenic |
| CTTACGAGTAAGAAGTACGT+TGG | 0.673929 | 3.4:+16822359 | None:intergenic |
| AACACAGCGTCACTATGAGG+AGG | 0.677188 | 3.4:-16822085 | MS.gene79448:CDS |
| GTAACCCACTTGGTGCCGGG+AGG | 0.688990 | 3.4:+16821875 | None:intergenic |
| GACCAAAGAGCATCCCTCGT+AGG | 0.690217 | 3.4:-16821923 | MS.gene79448:CDS |
| CCTGTTGTAGAGATATCCTG+CGG | 0.694729 | 3.4:-16824308 | MS.gene79448:intron |
| GTTGTAGAGATATCCTGCGG+AGG | 0.703265 | 3.4:-16824305 | MS.gene79448:intron |
| CAGCAGCTAGAAGAAGCCTG+AGG | 0.712548 | 3.4:-16827346 | MS.gene79448:intron |
| GGGAGGAACGATGACCTACG+AGG | 0.713672 | 3.4:+16821909 | None:intergenic |
| GGAGGAACGATGACCTACGA+GGG | 0.757117 | 3.4:+16821910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 16820525 | 16827621 | 16820525 | ID=MS.gene79448 |
| chr3.4 | mRNA | 16820525 | 16827621 | 16820525 | ID=MS.gene79448.t1;Parent=MS.gene79448 |
| chr3.4 | exon | 16827347 | 16827621 | 16827347 | ID=MS.gene79448.t1.exon1;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16827347 | 16827621 | 16827347 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16824416 | 16824554 | 16824416 | ID=MS.gene79448.t1.exon2;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16824416 | 16824554 | 16824416 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16824135 | 16824320 | 16824135 | ID=MS.gene79448.t1.exon3;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16824135 | 16824320 | 16824135 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16823587 | 16823763 | 16823587 | ID=MS.gene79448.t1.exon4;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16823587 | 16823763 | 16823587 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16822740 | 16822871 | 16822740 | ID=MS.gene79448.t1.exon5;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16822740 | 16822871 | 16822740 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16822484 | 16822663 | 16822484 | ID=MS.gene79448.t1.exon6;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16822484 | 16822663 | 16822484 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16822275 | 16822403 | 16822275 | ID=MS.gene79448.t1.exon7;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16822275 | 16822403 | 16822275 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16822035 | 16822139 | 16822035 | ID=MS.gene79448.t1.exon8;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16822035 | 16822139 | 16822035 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16821707 | 16821952 | 16821707 | ID=MS.gene79448.t1.exon9;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16821707 | 16821952 | 16821707 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| chr3.4 | exon | 16820525 | 16820662 | 16820525 | ID=MS.gene79448.t1.exon10;Parent=MS.gene79448.t1 |
| chr3.4 | CDS | 16820525 | 16820662 | 16820525 | ID=cds.MS.gene79448.t1;Parent=MS.gene79448.t1 |
| Gene Sequence |
| Protein sequence |
