Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23694.t1 | XP_013448602.1 | 96.5 | 602 | 20 | 1 | 1 | 601 | 1 | 602 | 3.40E-286 | 993.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23694.t1 | Q55GA4 | 37.3 | 603 | 336 | 9 | 35 | 597 | 33 | 633 | 2.2e-55 | 218.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23694.t1 | A0A072TYP8 | 96.5 | 602 | 20 | 1 | 1 | 601 | 1 | 602 | 2.5e-286 | 993.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050297 | MS.gene23694 | 0.80737 | 5.22E-50 | -1.69E-46 |
| MS.gene054643 | MS.gene23694 | 0.80463 | 1.97E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23694.t1 | MTR_7g056153 | 97.678 | 603 | 11 | 2 | 1 | 601 | 1 | 602 | 0.0 | 1215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23694.t1 | AT3G25100 | 67.430 | 611 | 174 | 5 | 1 | 601 | 1 | 596 | 0.0 | 846 |
Find 135 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAATAGTTCTGGGAATT+TGG | 0.185937 | 7.1:+45851432 | MS.gene23694:CDS |
| TCCGCTGCTGATGTTGTTTA+TGG | 0.208217 | 7.1:+45851823 | MS.gene23694:CDS |
| ATGAGTTGTTTGAGTCTTCT+TGG | 0.235274 | 7.1:+45852319 | MS.gene23694:CDS |
| ACGTTTCATGGGAAGCCTTC+AGG | 0.247349 | 7.1:+45851262 | MS.gene23694:CDS |
| CTGCTCAAGGAAATGCGTTC+GGG | 0.276711 | 7.1:+45852250 | MS.gene23694:CDS |
| GGATTCATGGTTATAGTTCT+AGG | 0.283095 | 7.1:+45851797 | MS.gene23694:CDS |
| AAGAAGAAGAAAGAGTATTA+TGG | 0.288347 | 7.1:+45851232 | MS.gene23694:CDS |
| GAGCAGTATATTAATAGTTC+TGG | 0.290818 | 7.1:+45851424 | MS.gene23694:CDS |
| AAACAAGCGGATCTCGCTTA+TGG | 0.301737 | 7.1:+45851004 | MS.gene23694:CDS |
| TAAAGCAGTTAATTCTTTCA+TGG | 0.305065 | 7.1:+45852356 | MS.gene23694:CDS |
| CCTCCGTTGTGCTTATCAAC+TGG | 0.306344 | 7.1:+45850837 | MS.gene23694:CDS |
| TCCATCTCCATCTTCGGAAT+TGG | 0.309699 | 7.1:-45851173 | None:intergenic |
| CGAATAAAGTTCTTGTTGTT+GGG | 0.318755 | 7.1:+45852202 | MS.gene23694:CDS |
| TGGGATGCAAAAGGCTATTA+AGG | 0.319371 | 7.1:+45851957 | MS.gene23694:CDS |
| TTCTTGTTGTTGGGGTTTGT+GGG | 0.321732 | 7.1:+45852211 | MS.gene23694:CDS |
| TTTGGAGTCGTTCGTGAATT+CGG | 0.323881 | 7.1:+45851858 | MS.gene23694:CDS |
| TTATGGTGTGACTGCGCTTT+TGG | 0.324376 | 7.1:+45851840 | MS.gene23694:CDS |
| TATGGATTGGGGACGTTTCA+TGG | 0.327402 | 7.1:+45851250 | MS.gene23694:CDS |
| TGAAAGATGGGACGAAGATT+AGG | 0.328092 | 7.1:+45851476 | MS.gene23694:CDS |
| CCAACAACAAGAACTTTATT+CGG | 0.343201 | 7.1:-45852201 | None:intergenic |
| CCGAATAAAGTTCTTGTTGT+TGG | 0.348360 | 7.1:+45852201 | MS.gene23694:CDS |
| AAGAAAGAGTATTATGGATT+GGG | 0.351360 | 7.1:+45851238 | MS.gene23694:CDS |
| GCTGCTCAAGGAAATGCGTT+CGG | 0.353508 | 7.1:+45852249 | MS.gene23694:CDS |
| GTTCTTGTTGTTGGGGTTTG+TGG | 0.354406 | 7.1:+45852210 | MS.gene23694:CDS |
| GAAAGATGGGACGAAGATTA+GGG | 0.361537 | 7.1:+45851477 | MS.gene23694:CDS |
| TGGTTAGTGTTATGAGGGGT+GGG | 0.364648 | 7.1:-45850812 | None:intergenic |
| GAACAACAACAGAATCATTC+TGG | 0.367864 | 7.1:-45850961 | None:intergenic |
| TTCATCTCCATCTCCATCTT+CGG | 0.379268 | 7.1:-45851179 | None:intergenic |
| GGTTTGTGGGAGGCCTCGTT+TGG | 0.391938 | 7.1:+45852224 | MS.gene23694:CDS |
| GAAGAAAGAGTATTATGGAT+TGG | 0.394642 | 7.1:+45851237 | MS.gene23694:CDS |
| TAAGCAATCCTGGACGAATT+CGG | 0.403035 | 7.1:-45851502 | None:intergenic |
| AATGGATGCTTTGAGAGAAA+AGG | 0.409633 | 7.1:+45852134 | MS.gene23694:CDS |
| GGGATGTTGTGGAAGAAAGT+TGG | 0.418933 | 7.1:-45850649 | None:intergenic |
| GCCAAAGCTGATGCTGTTGC+AGG | 0.419676 | 7.1:+45851534 | MS.gene23694:CDS |
| AATTCTGTTACTTTGAAAGA+TGG | 0.420708 | 7.1:+45851463 | MS.gene23694:CDS |
| CTCCGTTGTGCTTATCAACT+GGG | 0.422612 | 7.1:+45850838 | MS.gene23694:CDS |
| GATCTGTGCTTGTATGTCTC+AGG | 0.429059 | 7.1:+45852176 | MS.gene23694:CDS |
| TCCTGCAACAGCATCAGCTT+TGG | 0.429568 | 7.1:-45851535 | None:intergenic |
| GAAGAAGTTGAAACTGTTGT+TGG | 0.433738 | 7.1:+45851633 | MS.gene23694:CDS |
| CTCAGACTCCGAATCTGATT+CGG | 0.434314 | 7.1:+45851099 | MS.gene23694:CDS |
| CGTTTCATGGGAAGCCTTCA+GGG | 0.436837 | 7.1:+45851263 | MS.gene23694:CDS |
| TCTGCGGATTCTAAACTGTT+GGG | 0.441601 | 7.1:+45852075 | MS.gene23694:CDS |
| AGAATACCGATGAATTGCTT+TGG | 0.442265 | 7.1:+45851320 | MS.gene23694:CDS |
| GTGGTTAGTGTTATGAGGGG+TGG | 0.445218 | 7.1:-45850813 | None:intergenic |
| CTCATCCTCATAAGCAATCC+TGG | 0.446687 | 7.1:-45851512 | None:intergenic |
| AAATCAGTAAGTCCATATTC+CGG | 0.451792 | 7.1:-45851754 | None:intergenic |
| AATGTTGATAAGCTCAAAGA+TGG | 0.453499 | 7.1:+45851937 | MS.gene23694:CDS |
| ATAACGAAGATAGTAGCATT+AGG | 0.456575 | 7.1:-45850899 | None:intergenic |
| CGGATTCGAGAATACGGAAA+AGG | 0.457489 | 7.1:-45850727 | None:intergenic |
| TTCGTCCAGGATTGCTTATG+AGG | 0.458166 | 7.1:+45851507 | MS.gene23694:CDS |
| AGAAATTCCAATTCCGAAGA+TGG | 0.460700 | 7.1:+45851166 | MS.gene23694:CDS |
| AAGATCCGGTGAAAATGTAT+AGG | 0.461080 | 7.1:+45851209 | MS.gene23694:CDS |
| AGCAGTATATTAATAGTTCT+GGG | 0.462246 | 7.1:+45851425 | MS.gene23694:CDS |
| AGGTGTGGTTAGTGTTATGA+GGG | 0.466577 | 7.1:-45850817 | None:intergenic |
| GATTCATGGTTATAGTTCTA+GGG | 0.467181 | 7.1:+45851798 | MS.gene23694:CDS |
| CTTCGCAAAATACTTAACTT+AGG | 0.468676 | 7.1:+45850875 | MS.gene23694:CDS |
| AAACTGTTGTTGGCTAGGAT+GGG | 0.473055 | 7.1:+45851643 | MS.gene23694:CDS |
| GAGGTATAGTGATGGTGTTA+TGG | 0.474525 | 7.1:+45851396 | MS.gene23694:CDS |
| GCGTTAGCAAGAGCAGTAAG+AGG | 0.475237 | 7.1:-45851037 | None:intergenic |
| ATCTGAATCCGAATCAGATT+CGG | 0.479819 | 7.1:-45851107 | None:intergenic |
| AAGAAAGTTGGGCGGATTGA+CGG | 0.483248 | 7.1:-45850637 | None:intergenic |
| GAAACTGTTGTTGGCTAGGA+TGG | 0.484688 | 7.1:+45851642 | MS.gene23694:CDS |
| CTGAGATTATGAAGATGAAT+CGG | 0.486327 | 7.1:-45850935 | None:intergenic |
| GATTCAGATTCATCTGAATC+CGG | 0.488490 | 7.1:+45851121 | MS.gene23694:CDS |
| GGATGTTGTGGAAGAAAGTT+GGG | 0.488755 | 7.1:-45850648 | None:intergenic |
| CCTCGTTTGGCTGCTGCTCA+AGG | 0.493809 | 7.1:+45852237 | MS.gene23694:CDS |
| TGCGTTTAGAAGTGCGGCTG+AGG | 0.495604 | 7.1:+45852275 | MS.gene23694:CDS |
| TTGAATCGGATTCGAGAATA+CGG | 0.496269 | 7.1:-45850733 | None:intergenic |
| GAGGTGTGGTTAGTGTTATG+AGG | 0.497872 | 7.1:-45850818 | None:intergenic |
| TTGAAGACGTGGAGTGATAA+CGG | 0.498431 | 7.1:+45851607 | MS.gene23694:CDS |
| ATTTCGCGGAAGGATGAAAC+GGG | 0.500501 | 7.1:-45850773 | None:intergenic |
| ATTCTGTTACTTTGAAAGAT+GGG | 0.502719 | 7.1:+45851464 | MS.gene23694:CDS |
| GGATTCGAGAATACGGAAAA+GGG | 0.506807 | 7.1:-45850726 | None:intergenic |
| ATGGATGCTTTGAGAGAAAA+GGG | 0.510225 | 7.1:+45852135 | MS.gene23694:CDS |
| CAAAACTTTGTCAAAGCTTG+AGG | 0.512346 | 7.1:-45852102 | None:intergenic |
| AGATGAAGAACGTCAAGATC+CGG | 0.515962 | 7.1:+45851195 | MS.gene23694:CDS |
| GTCTGCGGATTCTAAACTGT+TGG | 0.516003 | 7.1:+45852074 | MS.gene23694:CDS |
| AGATGCGTATTGAATTGAAT+CGG | 0.517102 | 7.1:-45850747 | None:intergenic |
| GAATAAAGTTCTTGTTGTTG+GGG | 0.518055 | 7.1:+45852203 | MS.gene23694:CDS |
| GTTGAAGGGAAAATGAGGAC+GGG | 0.522776 | 7.1:-45850671 | None:intergenic |
| GAGTCGTTCGTGAATTCGGA+TGG | 0.524667 | 7.1:+45851862 | MS.gene23694:CDS |
| GCTCAAAGATGGGATGCAAA+AGG | 0.532197 | 7.1:+45851948 | MS.gene23694:CDS |
| GAATCGACGTCGGAGGTTGA+AGG | 0.532345 | 7.1:-45850686 | None:intergenic |
| AGTTGAAACTGTTGTTGGCT+AGG | 0.535306 | 7.1:+45851638 | MS.gene23694:CDS |
| AGCTGATGCTGTTGCAGGAG+TGG | 0.540247 | 7.1:+45851539 | MS.gene23694:CDS |
| AAGAAGACTCAAACAACTCA+TGG | 0.542997 | 7.1:-45852317 | None:intergenic |
| ATGGATTGGGGACGTTTCAT+GGG | 0.543631 | 7.1:+45851251 | MS.gene23694:CDS |
| TTGTTGTTGGGGTTTGTGGG+AGG | 0.545204 | 7.1:+45852214 | MS.gene23694:CDS |
| TTAGGGCACCGAATTCGTCC+AGG | 0.545508 | 7.1:+45851494 | MS.gene23694:CDS |
| AATTTCGCGGAAGGATGAAA+CGG | 0.547710 | 7.1:-45850774 | None:intergenic |
| TCCAATTCCGAAGATGGAGA+TGG | 0.549394 | 7.1:+45851172 | MS.gene23694:CDS |
| AATCGACGTCGGAGGTTGAA+GGG | 0.553554 | 7.1:-45850685 | None:intergenic |
| TAGTTCTGGGAATTTGGATG+CGG | 0.555180 | 7.1:+45851438 | MS.gene23694:CDS |
| AACTGTTGTTGGCTAGGATG+GGG | 0.557759 | 7.1:+45851644 | MS.gene23694:CDS |
| TAGTGATGGTGTTATGGAGT+TGG | 0.564329 | 7.1:+45851402 | MS.gene23694:CDS |
| AGCTAACCAAAGCAATTCAT+CGG | 0.567480 | 7.1:-45851326 | None:intergenic |
| TTGAAGGGAAAATGAGGACG+GGG | 0.568859 | 7.1:-45850670 | None:intergenic |
| CGGGGTTGCGTTTAGAAGTG+CGG | 0.569454 | 7.1:+45852269 | MS.gene23694:CDS |
| AGAAAGAGTATTATGGATTG+GGG | 0.575426 | 7.1:+45851239 | MS.gene23694:CDS |
| ATTGCTTTGGTTAGCTTGTG+TGG | 0.578683 | 7.1:+45851333 | MS.gene23694:CDS |
| GACATACAAGCACAGATCAA+AGG | 0.583268 | 7.1:-45852171 | None:intergenic |
| GAAGTGGAAGGAAGTTTCGA+TGG | 0.584074 | 7.1:+45852037 | MS.gene23694:CDS |
| CCGATCAATTTGTACACGAG+AGG | 0.585981 | 7.1:+45851362 | MS.gene23694:CDS |
| CGGAGGTTGAAGGGAAAATG+AGG | 0.594655 | 7.1:-45850676 | None:intergenic |
| ACGGATATATTCGAAGTGGA+AGG | 0.597096 | 7.1:+45852025 | MS.gene23694:CDS |
| TAGCATAATTGTGAATTTCG+CGG | 0.597285 | 7.1:-45850787 | None:intergenic |
| TGCTCAAGGAAATGCGTTCG+GGG | 0.600482 | 7.1:+45852251 | MS.gene23694:CDS |
| CTGCGGATTCTAAACTGTTG+GGG | 0.601525 | 7.1:+45852076 | MS.gene23694:CDS |
| AAAGGCTATTAAGGTTCAGA+GGG | 0.602140 | 7.1:+45851966 | MS.gene23694:CDS |
| TGCTTCGATGCAGTTTAATG+TGG | 0.608675 | 7.1:+45851891 | MS.gene23694:CDS |
| GTTTCAGTATATGAATGTTG+AGG | 0.608759 | 7.1:+45851693 | MS.gene23694:CDS |
| AAAAGGCTATTAAGGTTCAG+AGG | 0.612575 | 7.1:+45851965 | MS.gene23694:CDS |
| CCTCTCGTGTACAAATTGAT+CGG | 0.617832 | 7.1:-45851362 | None:intergenic |
| GTTGAAGCTTGACGAGTCTG+CGG | 0.622496 | 7.1:+45852059 | MS.gene23694:CDS |
| CCTTGAGCAGCAGCCAAACG+AGG | 0.631943 | 7.1:-45852237 | None:intergenic |
| TCATACATCAAACACCCTGA+AGG | 0.632800 | 7.1:-45851277 | None:intergenic |
| ATAATTGTGAATTTCGCGGA+AGG | 0.635513 | 7.1:-45850783 | None:intergenic |
| TGATAAGCACAACGGAGGTG+TGG | 0.636572 | 7.1:-45850832 | None:intergenic |
| GGTTGAAGGGAAAATGAGGA+CGG | 0.641159 | 7.1:-45850672 | None:intergenic |
| ATGTTGATAAGCTCAAAGAT+GGG | 0.642662 | 7.1:+45851938 | MS.gene23694:CDS |
| GATTATGAAGATGAATCGGA+CGG | 0.649594 | 7.1:-45850931 | None:intergenic |
| ACCATAAACAACATCAGCAG+CGG | 0.651311 | 7.1:-45851824 | None:intergenic |
| CTTTGAGAGAAAAGGGTGCG+AGG | 0.654784 | 7.1:+45852142 | MS.gene23694:CDS |
| TGCGCAGAGGGAATCGACGT+CGG | 0.658090 | 7.1:-45850696 | None:intergenic |
| TCCGTTGTGCTTATCAACTG+GGG | 0.659012 | 7.1:+45850839 | MS.gene23694:CDS |
| TGTTGTGGAAGAAAGTTGGG+CGG | 0.659412 | 7.1:-45850645 | None:intergenic |
| TTGCAACTAAATTGAAGACG+TGG | 0.664821 | 7.1:+45851596 | MS.gene23694:CDS |
| AGTGATGAGAGGTATAGTGA+TGG | 0.665061 | 7.1:+45851388 | MS.gene23694:CDS |
| ACGAGAGGTTGAGTGATGAG+AGG | 0.670283 | 7.1:+45851377 | MS.gene23694:CDS |
| TGAAGGGAAAATGAGGACGG+GGG | 0.671634 | 7.1:-45850669 | None:intergenic |
| GCAGAGGGAATCGACGTCGG+AGG | 0.677702 | 7.1:-45850693 | None:intergenic |
| GGTGTGGTTAGTGTTATGAG+GGG | 0.709839 | 7.1:-45850816 | None:intergenic |
| GCCCCAGTTGATAAGCACAA+CGG | 0.716127 | 7.1:-45850840 | None:intergenic |
| CCAGTTGATAAGCACAACGG+AGG | 0.733234 | 7.1:-45850837 | None:intergenic |
| TTTCGCGGAAGGATGAAACG+GGG | 0.801246 | 7.1:-45850772 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTGTTATTTTCTAA+TGG | + | chr7.1:45852116-45852135 | MS.gene23694:CDS | 15.0% |
| !!! | TTACTGATTTTTATTATCGT+GGG | + | chr7.1:45851767-45851786 | MS.gene23694:CDS | 20.0% |
| ! | AGCAGTATATTAATAGTTCT+GGG | + | chr7.1:45851425-45851444 | MS.gene23694:CDS | 25.0% |
| ! | TAAAGCAGTTAATTCTTTCA+TGG | + | chr7.1:45852356-45852375 | MS.gene23694:CDS | 25.0% |
| !!! | AAGAAAGAGTATTATGGATT+GGG | + | chr7.1:45851238-45851257 | MS.gene23694:CDS | 25.0% |
| !!! | AAGAAGAAGAAAGAGTATTA+TGG | + | chr7.1:45851232-45851251 | MS.gene23694:CDS | 25.0% |
| !!! | AATTCTGTTACTTTGAAAGA+TGG | + | chr7.1:45851463-45851482 | MS.gene23694:CDS | 25.0% |
| !!! | ATTCTGTTACTTTGAAAGAT+GGG | + | chr7.1:45851464-45851483 | MS.gene23694:CDS | 25.0% |
| !!! | CTTACTGATTTTTATTATCG+TGG | + | chr7.1:45851766-45851785 | MS.gene23694:CDS | 25.0% |
| !!! | TATTAATAGTTCTGGGAATT+TGG | + | chr7.1:45851432-45851451 | MS.gene23694:CDS | 25.0% |
| !!! | TCTCTTTCTTGATTTTTTAC+CGG | - | chr7.1:45851143-45851162 | None:intergenic | 25.0% |
| AAAAACGGATATATTCGAAG+TGG | + | chr7.1:45852021-45852040 | MS.gene23694:CDS | 30.0% | |
| AAATCAGTAAGTCCATATTC+CGG | - | chr7.1:45851757-45851776 | None:intergenic | 30.0% | |
| AGATGCGTATTGAATTGAAT+CGG | - | chr7.1:45850750-45850769 | None:intergenic | 30.0% | |
| AGTCTTGCGATTATGAAAAA+CGG | + | chr7.1:45852006-45852025 | MS.gene23694:CDS | 30.0% | |
| ATAACGAAGATAGTAGCATT+AGG | - | chr7.1:45850902-45850921 | None:intergenic | 30.0% | |
| CCAACAACAAGAACTTTATT+CGG | - | chr7.1:45852204-45852223 | None:intergenic | 30.0% | |
| CTGAGATTATGAAGATGAAT+CGG | - | chr7.1:45850938-45850957 | None:intergenic | 30.0% | |
| CTTCGCAAAATACTTAACTT+AGG | + | chr7.1:45850875-45850894 | MS.gene23694:CDS | 30.0% | |
| GAGCAGTATATTAATAGTTC+TGG | + | chr7.1:45851424-45851443 | MS.gene23694:CDS | 30.0% | |
| GTTTCAGTATATGAATGTTG+AGG | + | chr7.1:45851693-45851712 | MS.gene23694:CDS | 30.0% | |
| TAGCATAATTGTGAATTTCG+CGG | - | chr7.1:45850790-45850809 | None:intergenic | 30.0% | |
| ! | AATGTTGATAAGCTCAAAGA+TGG | + | chr7.1:45851937-45851956 | MS.gene23694:CDS | 30.0% |
| ! | ATGTTGATAAGCTCAAAGAT+GGG | + | chr7.1:45851938-45851957 | MS.gene23694:CDS | 30.0% |
| ! | GATTCATGGTTATAGTTCTA+GGG | + | chr7.1:45851798-45851817 | MS.gene23694:CDS | 30.0% |
| ! | TTCTTCCTATACATTTTCAC+CGG | - | chr7.1:45851217-45851236 | None:intergenic | 30.0% |
| ! | TTTATTATCGTGGGTTTTTG+AGG | + | chr7.1:45851776-45851795 | MS.gene23694:CDS | 30.0% |
| !! | AGAAAGAGTATTATGGATTG+GGG | + | chr7.1:45851239-45851258 | MS.gene23694:CDS | 30.0% |
| !! | CGAATAAAGTTCTTGTTGTT+GGG | + | chr7.1:45852202-45852221 | MS.gene23694:CDS | 30.0% |
| !! | GAAGAAAGAGTATTATGGAT+TGG | + | chr7.1:45851237-45851256 | MS.gene23694:CDS | 30.0% |
| !! | GAATAAAGTTCTTGTTGTTG+GGG | + | chr7.1:45852203-45852222 | MS.gene23694:CDS | 30.0% |
| !! | TGTTGTTGTTCTTTTTACTC+AGG | + | chr7.1:45850973-45850992 | MS.gene23694:CDS | 30.0% |
| AAAAGGCTATTAAGGTTCAG+AGG | + | chr7.1:45851965-45851984 | MS.gene23694:CDS | 35.0% | |
| AAAGGCTATTAAGGTTCAGA+GGG | + | chr7.1:45851966-45851985 | MS.gene23694:CDS | 35.0% | |
| AAGAAGACTCAAACAACTCA+TGG | - | chr7.1:45852320-45852339 | None:intergenic | 35.0% | |
| AAGATCCGGTGAAAATGTAT+AGG | + | chr7.1:45851209-45851228 | MS.gene23694:CDS | 35.0% | |
| AGAAATTCCAATTCCGAAGA+TGG | + | chr7.1:45851166-45851185 | MS.gene23694:CDS | 35.0% | |
| AGAATACCGATGAATTGCTT+TGG | + | chr7.1:45851320-45851339 | MS.gene23694:CDS | 35.0% | |
| AGCTAACCAAAGCAATTCAT+CGG | - | chr7.1:45851329-45851348 | None:intergenic | 35.0% | |
| ATAATTGTGAATTTCGCGGA+AGG | - | chr7.1:45850786-45850805 | None:intergenic | 35.0% | |
| ATCTGAATCCGAATCAGATT+CGG | - | chr7.1:45851110-45851129 | None:intergenic | 35.0% | |
| ATGAGTTGTTTGAGTCTTCT+TGG | + | chr7.1:45852319-45852338 | MS.gene23694:CDS | 35.0% | |
| CAAAACTTTGTCAAAGCTTG+AGG | - | chr7.1:45852105-45852124 | None:intergenic | 35.0% | |
| GAACAACAACAGAATCATTC+TGG | - | chr7.1:45850964-45850983 | None:intergenic | 35.0% | |
| GAAGAAGTTGAAACTGTTGT+TGG | + | chr7.1:45851633-45851652 | MS.gene23694:CDS | 35.0% | |
| GAGGTGAAAAAGAAGATGAA+GGG | + | chr7.1:45851712-45851731 | MS.gene23694:CDS | 35.0% | |
| GATTATGAAGATGAATCGGA+CGG | - | chr7.1:45850934-45850953 | None:intergenic | 35.0% | |
| GATTCAGATTCATCTGAATC+CGG | + | chr7.1:45851121-45851140 | MS.gene23694:CDS | 35.0% | |
| GGATTCATGGTTATAGTTCT+AGG | + | chr7.1:45851797-45851816 | MS.gene23694:CDS | 35.0% | |
| TCAGGAAGATGAAAAACAAG+CGG | + | chr7.1:45850991-45851010 | MS.gene23694:CDS | 35.0% | |
| TGAGGTGAAAAAGAAGATGA+AGG | + | chr7.1:45851711-45851730 | MS.gene23694:CDS | 35.0% | |
| TTGAATCGGATTCGAGAATA+CGG | - | chr7.1:45850736-45850755 | None:intergenic | 35.0% | |
| TTGCAACTAAATTGAAGACG+TGG | + | chr7.1:45851596-45851615 | MS.gene23694:CDS | 35.0% | |
| ! | CCGAATAAAGTTCTTGTTGT+TGG | + | chr7.1:45852201-45852220 | MS.gene23694:CDS | 35.0% |
| ! | TGAGTTTGAGAAGTTTTTGC+CGG | + | chr7.1:45851735-45851754 | MS.gene23694:CDS | 35.0% |
| !! | AATGGATGCTTTGAGAGAAA+AGG | + | chr7.1:45852134-45852153 | MS.gene23694:CDS | 35.0% |
| !! | ATGGATGCTTTGAGAGAAAA+GGG | + | chr7.1:45852135-45852154 | MS.gene23694:CDS | 35.0% |
| !! | CGCTTCTACTACTTTTGATT+CGG | + | chr7.1:45851057-45851076 | MS.gene23694:CDS | 35.0% |
| AATTTCGCGGAAGGATGAAA+CGG | - | chr7.1:45850777-45850796 | None:intergenic | 40.0% | |
| ACCATAAACAACATCAGCAG+CGG | - | chr7.1:45851827-45851846 | None:intergenic | 40.0% | |
| ACGGATATATTCGAAGTGGA+AGG | + | chr7.1:45852025-45852044 | MS.gene23694:CDS | 40.0% | |
| AGATGAAGAACGTCAAGATC+CGG | + | chr7.1:45851195-45851214 | MS.gene23694:CDS | 40.0% | |
| AGGTGTGGTTAGTGTTATGA+GGG | - | chr7.1:45850820-45850839 | None:intergenic | 40.0% | |
| CCTCTCGTGTACAAATTGAT+CGG | - | chr7.1:45851365-45851384 | None:intergenic | 40.0% | |
| GAAAGATGGGACGAAGATTA+GGG | + | chr7.1:45851477-45851496 | MS.gene23694:CDS | 40.0% | |
| GACATACAAGCACAGATCAA+AGG | - | chr7.1:45852174-45852193 | None:intergenic | 40.0% | |
| GGATGTTGTGGAAGAAAGTT+GGG | - | chr7.1:45850651-45850670 | None:intergenic | 40.0% | |
| GGATTCGAGAATACGGAAAA+GGG | - | chr7.1:45850729-45850748 | None:intergenic | 40.0% | |
| TAAGCAATCCTGGACGAATT+CGG | - | chr7.1:45851505-45851524 | None:intergenic | 40.0% | |
| TCATACATCAAACACCCTGA+AGG | - | chr7.1:45851280-45851299 | None:intergenic | 40.0% | |
| TCTGCGGATTCTAAACTGTT+GGG | + | chr7.1:45852075-45852094 | MS.gene23694:CDS | 40.0% | |
| TGAAAGATGGGACGAAGATT+AGG | + | chr7.1:45851476-45851495 | MS.gene23694:CDS | 40.0% | |
| TGCTTCGATGCAGTTTAATG+TGG | + | chr7.1:45851891-45851910 | MS.gene23694:CDS | 40.0% | |
| TGGGATGCAAAAGGCTATTA+AGG | + | chr7.1:45851957-45851976 | MS.gene23694:CDS | 40.0% | |
| TTCATCTCCATCTCCATCTT+CGG | - | chr7.1:45851182-45851201 | None:intergenic | 40.0% | |
| TTGAAGACGTGGAGTGATAA+CGG | + | chr7.1:45851607-45851626 | MS.gene23694:CDS | 40.0% | |
| ! | AAACTGTTGTTGGCTAGGAT+GGG | + | chr7.1:45851643-45851662 | MS.gene23694:CDS | 40.0% |
| ! | AGTGATGAGAGGTATAGTGA+TGG | + | chr7.1:45851388-45851407 | MS.gene23694:CDS | 40.0% |
| ! | AGTTGAAACTGTTGTTGGCT+AGG | + | chr7.1:45851638-45851657 | MS.gene23694:CDS | 40.0% |
| ! | ATGAGCTAGCTCATTTTCTG+AGG | + | chr7.1:45851296-45851315 | MS.gene23694:CDS | 40.0% |
| ! | GAGAAGTTTTTGCCGGAATA+TGG | + | chr7.1:45851742-45851761 | MS.gene23694:CDS | 40.0% |
| ! | GAGGTATAGTGATGGTGTTA+TGG | + | chr7.1:45851396-45851415 | MS.gene23694:CDS | 40.0% |
| ! | TTTGGAGTCGTTCGTGAATT+CGG | + | chr7.1:45851858-45851877 | MS.gene23694:CDS | 40.0% |
| !! | ATTGCTTTGGTTAGCTTGTG+TGG | + | chr7.1:45851333-45851352 | MS.gene23694:CDS | 40.0% |
| !! | TAGTGATGGTGTTATGGAGT+TGG | + | chr7.1:45851402-45851421 | MS.gene23694:CDS | 40.0% |
| !! | TAGTTCTGGGAATTTGGATG+CGG | + | chr7.1:45851438-45851457 | MS.gene23694:CDS | 40.0% |
| !! | TTCTTGTTGTTGGGGTTTGT+GGG | + | chr7.1:45852211-45852230 | MS.gene23694:CDS | 40.0% |
| AAACAAGCGGATCTCGCTTA+TGG | + | chr7.1:45851004-45851023 | MS.gene23694:CDS | 45.0% | |
| ATTTCGCGGAAGGATGAAAC+GGG | - | chr7.1:45850776-45850795 | None:intergenic | 45.0% | |
| CCGATCAATTTGTACACGAG+AGG | + | chr7.1:45851362-45851381 | MS.gene23694:CDS | 45.0% | |
| CGGATTCGAGAATACGGAAA+AGG | - | chr7.1:45850730-45850749 | None:intergenic | 45.0% | |
| CTCAGACTCCGAATCTGATT+CGG | + | chr7.1:45851099-45851118 | MS.gene23694:CDS | 45.0% | |
| CTCATCCTCATAAGCAATCC+TGG | - | chr7.1:45851515-45851534 | None:intergenic | 45.0% | |
| CTCCGTTGTGCTTATCAACT+GGG | + | chr7.1:45850838-45850857 | MS.gene23694:CDS | 45.0% | |
| CTGCGGATTCTAAACTGTTG+GGG | + | chr7.1:45852076-45852095 | MS.gene23694:CDS | 45.0% | |
| GAAGTGGAAGGAAGTTTCGA+TGG | + | chr7.1:45852037-45852056 | MS.gene23694:CDS | 45.0% | |
| GAGGTGTGGTTAGTGTTATG+AGG | - | chr7.1:45850821-45850840 | None:intergenic | 45.0% | |
| GATCTGTGCTTGTATGTCTC+AGG | + | chr7.1:45852176-45852195 | MS.gene23694:CDS | 45.0% | |
| GCTCAAAGATGGGATGCAAA+AGG | + | chr7.1:45851948-45851967 | MS.gene23694:CDS | 45.0% | |
| GGGATGTTGTGGAAGAAAGT+TGG | - | chr7.1:45850652-45850671 | None:intergenic | 45.0% | |
| GGTGTGGTTAGTGTTATGAG+GGG | - | chr7.1:45850819-45850838 | None:intergenic | 45.0% | |
| GGTTGAAGGGAAAATGAGGA+CGG | - | chr7.1:45850675-45850694 | None:intergenic | 45.0% | |
| GTCTGCGGATTCTAAACTGT+TGG | + | chr7.1:45852074-45852093 | MS.gene23694:CDS | 45.0% | |
| GTTGAAGGGAAAATGAGGAC+GGG | - | chr7.1:45850674-45850693 | None:intergenic | 45.0% | |
| TCCAATTCCGAAGATGGAGA+TGG | + | chr7.1:45851172-45851191 | MS.gene23694:CDS | 45.0% | |
| TCCATCTCCATCTTCGGAAT+TGG | - | chr7.1:45851176-45851195 | None:intergenic | 45.0% | |
| TCCGTTGTGCTTATCAACTG+GGG | + | chr7.1:45850839-45850858 | MS.gene23694:CDS | 45.0% | |
| TGGTTAGTGTTATGAGGGGT+GGG | - | chr7.1:45850815-45850834 | None:intergenic | 45.0% | |
| TGTTGTGGAAGAAAGTTGGG+CGG | - | chr7.1:45850648-45850667 | None:intergenic | 45.0% | |
| TTCGTCCAGGATTGCTTATG+AGG | + | chr7.1:45851507-45851526 | MS.gene23694:CDS | 45.0% | |
| TTGAAGGGAAAATGAGGACG+GGG | - | chr7.1:45850673-45850692 | None:intergenic | 45.0% | |
| ! | AACTGTTGTTGGCTAGGATG+GGG | + | chr7.1:45851644-45851663 | MS.gene23694:CDS | 45.0% |
| ! | AGGTTCAGAGGGCAATTTTG+AGG | + | chr7.1:45851977-45851996 | MS.gene23694:CDS | 45.0% |
| ! | GAAACTGTTGTTGGCTAGGA+TGG | + | chr7.1:45851642-45851661 | MS.gene23694:CDS | 45.0% |
| ! | TCCGCTGCTGATGTTGTTTA+TGG | + | chr7.1:45851823-45851842 | MS.gene23694:CDS | 45.0% |
| ! | TTATGGTGTGACTGCGCTTT+TGG | + | chr7.1:45851840-45851859 | MS.gene23694:CDS | 45.0% |
| !! | AAGAAAGTTGGGCGGATTGA+CGG | - | chr7.1:45850640-45850659 | None:intergenic | 45.0% |
| !! | ATGGATTGGGGACGTTTCAT+GGG | + | chr7.1:45851251-45851270 | MS.gene23694:CDS | 45.0% |
| !! | CGTGGGTTTTTGAGGATTCA+TGG | + | chr7.1:45851784-45851803 | MS.gene23694:CDS | 45.0% |
| !! | GTTCTTGTTGTTGGGGTTTG+TGG | + | chr7.1:45852210-45852229 | MS.gene23694:CDS | 45.0% |
| !! | TATGGATTGGGGACGTTTCA+TGG | + | chr7.1:45851250-45851269 | MS.gene23694:CDS | 45.0% |
| AATCGACGTCGGAGGTTGAA+GGG | - | chr7.1:45850688-45850707 | None:intergenic | 50.0% | |
| ACGAGAGGTTGAGTGATGAG+AGG | + | chr7.1:45851377-45851396 | MS.gene23694:CDS | 50.0% | |
| ACGTTTCATGGGAAGCCTTC+AGG | + | chr7.1:45851262-45851281 | MS.gene23694:CDS | 50.0% | |
| CCTCCGTTGTGCTTATCAAC+TGG | + | chr7.1:45850837-45850856 | MS.gene23694:CDS | 50.0% | |
| CGGAGGTTGAAGGGAAAATG+AGG | - | chr7.1:45850679-45850698 | None:intergenic | 50.0% | |
| CGTTTCATGGGAAGCCTTCA+GGG | + | chr7.1:45851263-45851282 | MS.gene23694:CDS | 50.0% | |
| CTGCTCAAGGAAATGCGTTC+GGG | + | chr7.1:45852250-45852269 | MS.gene23694:CDS | 50.0% | |
| GAGTCGTTCGTGAATTCGGA+TGG | + | chr7.1:45851862-45851881 | MS.gene23694:CDS | 50.0% | |
| GCGTTAGCAAGAGCAGTAAG+AGG | - | chr7.1:45851040-45851059 | None:intergenic | 50.0% | |
| GCTGCTCAAGGAAATGCGTT+CGG | + | chr7.1:45852249-45852268 | MS.gene23694:CDS | 50.0% | |
| GTGGTTAGTGTTATGAGGGG+TGG | - | chr7.1:45850816-45850835 | None:intergenic | 50.0% | |
| GTTGAAGCTTGACGAGTCTG+CGG | + | chr7.1:45852059-45852078 | MS.gene23694:CDS | 50.0% | |
| TCCTGCAACAGCATCAGCTT+TGG | - | chr7.1:45851538-45851557 | None:intergenic | 50.0% | |
| TGAAGGGAAAATGAGGACGG+GGG | - | chr7.1:45850672-45850691 | None:intergenic | 50.0% | |
| TGATAAGCACAACGGAGGTG+TGG | - | chr7.1:45850835-45850854 | None:intergenic | 50.0% | |
| TGCTCAAGGAAATGCGTTCG+GGG | + | chr7.1:45852251-45852270 | MS.gene23694:CDS | 50.0% | |
| TTTCGCGGAAGGATGAAACG+GGG | - | chr7.1:45850775-45850794 | None:intergenic | 50.0% | |
| ! | CTTTGAGAGAAAAGGGTGCG+AGG | + | chr7.1:45852142-45852161 | MS.gene23694:CDS | 50.0% |
| ! | TTGTTGTTGGGGTTTGTGGG+AGG | + | chr7.1:45852214-45852233 | MS.gene23694:CDS | 50.0% |
| !! | CCAGTTGATAAGCACAACGG+AGG | - | chr7.1:45850840-45850859 | None:intergenic | 50.0% |
| !! | GCCCCAGTTGATAAGCACAA+CGG | - | chr7.1:45850843-45850862 | None:intergenic | 50.0% |
| !!! | AAAGGGTTTTGAGTGCGCAG+AGG | - | chr7.1:45850712-45850731 | None:intergenic | 50.0% |
| !!! | AAGGGTTTTGAGTGCGCAGA+GGG | - | chr7.1:45850711-45850730 | None:intergenic | 50.0% |
| !!! | CAGAGGGCAATTTTGAGGCA+GGG | + | chr7.1:45851982-45852001 | MS.gene23694:CDS | 50.0% |
| !!! | TCAGAGGGCAATTTTGAGGC+AGG | + | chr7.1:45851981-45852000 | MS.gene23694:CDS | 50.0% |
| AATGAGGACGGGGGATGTTG+TGG | - | chr7.1:45850663-45850682 | None:intergenic | 55.0% | |
| AGCTGATGCTGTTGCAGGAG+TGG | + | chr7.1:45851539-45851558 | MS.gene23694:CDS | 55.0% | |
| CGGGGTTGCGTTTAGAAGTG+CGG | + | chr7.1:45852269-45852288 | MS.gene23694:CDS | 55.0% | |
| GAATCGACGTCGGAGGTTGA+AGG | - | chr7.1:45850689-45850708 | None:intergenic | 55.0% | |
| GCCAAAGCTGATGCTGTTGC+AGG | + | chr7.1:45851534-45851553 | MS.gene23694:CDS | 55.0% | |
| ! | TGCGTTTAGAAGTGCGGCTG+AGG | + | chr7.1:45852275-45852294 | MS.gene23694:CDS | 55.0% |
| !! | TTAGGGCACCGAATTCGTCC+AGG | + | chr7.1:45851494-45851513 | MS.gene23694:CDS | 55.0% |
| CCTCGTTTGGCTGCTGCTCA+AGG | + | chr7.1:45852237-45852256 | MS.gene23694:CDS | 60.0% | |
| CCTTGAGCAGCAGCCAAACG+AGG | - | chr7.1:45852240-45852259 | None:intergenic | 60.0% | |
| GGTTTGTGGGAGGCCTCGTT+TGG | + | chr7.1:45852224-45852243 | MS.gene23694:CDS | 60.0% | |
| TGCGCAGAGGGAATCGACGT+CGG | - | chr7.1:45850699-45850718 | None:intergenic | 60.0% | |
| GCAGAGGGAATCGACGTCGG+AGG | - | chr7.1:45850696-45850715 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 45850596 | 45852401 | 45850596 | ID=MS.gene23694 |
| chr7.1 | mRNA | 45850596 | 45852401 | 45850596 | ID=MS.gene23694.t1;Parent=MS.gene23694 |
| chr7.1 | exon | 45850596 | 45852401 | 45850596 | ID=MS.gene23694.t1.exon1;Parent=MS.gene23694.t1 |
| chr7.1 | CDS | 45850596 | 45852401 | 45850596 | ID=cds.MS.gene23694.t1;Parent=MS.gene23694.t1 |
| Gene Sequence |
| Protein sequence |
