Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81804.t1 | XP_003616135.1 | 96.7 | 209 | 6 | 1 | 1 | 208 | 1 | 209 | 1.00E-104 | 389.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81804.t1 | C6TCJ2 | 67.5 | 209 | 63 | 3 | 1 | 208 | 2 | 206 | 2.4e-70 | 266.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81804.t1 | G7KFQ6 | 96.7 | 209 | 6 | 1 | 1 | 208 | 1 | 209 | 7.4e-105 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene81804 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene81804 | 0.835988 | 1.22E-56 | -1.69E-46 |
| MS.gene050397 | MS.gene81804 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene81804 | 0.818924 | 1.52E-52 | -1.69E-46 |
| MS.gene051255 | MS.gene81804 | 0.807494 | 4.92E-50 | -1.69E-46 |
| MS.gene052287 | MS.gene81804 | 0.815305 | 9.90E-52 | -1.69E-46 |
| MS.gene052326 | MS.gene81804 | 0.805764 | 1.14E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene81804 | 0.818915 | 1.53E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene81804 | 0.803413 | 3.53E-49 | -1.69E-46 |
| MS.gene054010 | MS.gene81804 | 0.811091 | 8.33E-51 | -1.69E-46 |
| MS.gene054012 | MS.gene81804 | 0.807867 | 4.10E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene81804 | 0.813942 | 1.98E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene81804 | 0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene81804 | 0.838726 | 2.42E-57 | -1.69E-46 |
| MS.gene055390 | MS.gene81804 | 0.830409 | 2.98E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene81804 | 0.800009 | 1.76E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene81804 | 0.80187 | 7.34E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene81804 | 0.858445 | 8.20E-63 | -1.69E-46 |
| MS.gene056410 | MS.gene81804 | 0.834417 | 3.03E-56 | -1.69E-46 |
| MS.gene056931 | MS.gene81804 | 0.813666 | 2.28E-51 | -1.69E-46 |
| MS.gene056933 | MS.gene81804 | 0.814389 | 1.58E-51 | -1.69E-46 |
| MS.gene056935 | MS.gene81804 | 0.800999 | 1.11E-48 | -1.69E-46 |
| MS.gene05733 | MS.gene81804 | 0.804646 | 1.96E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene81804 | 0.835259 | 1.86E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene81804 | 0.846032 | 2.80E-59 | -1.69E-46 |
| MS.gene05842 | MS.gene81804 | 0.808276 | 3.35E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene81804 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene81804 | 0.847824 | 9.06E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene81804 | 0.815718 | 8.01E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene81804 | 0.810051 | 1.40E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene81804 | 0.82559 | 4.31E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene81804 | 0.826971 | 2.02E-54 | -1.69E-46 |
| MS.gene05984 | MS.gene81804 | 0.803356 | 3.62E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene81804 | 0.820861 | 5.48E-53 | -1.69E-46 |
| MS.gene060005 | MS.gene81804 | 0.808862 | 2.51E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene81804 | 0.828323 | 9.58E-55 | -1.69E-46 |
| MS.gene060559 | MS.gene81804 | 0.817201 | 3.73E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene81804 | 0.813003 | 3.19E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034836 | MS.gene81804 | PPI |
| MS.gene81771 | MS.gene81804 | PPI |
| MS.gene81804 | MS.gene056923 | PPI |
| MS.gene034838 | MS.gene81804 | PPI |
| MS.gene065729 | MS.gene81804 | PPI |
| MS.gene034839 | MS.gene81804 | PPI |
| MS.gene81804 | MS.gene81770 | PPI |
| MS.gene065724 | MS.gene81804 | PPI |
| MS.gene81774 | MS.gene81804 | PPI |
| MS.gene056922 | MS.gene81804 | PPI |
| MS.gene056925 | MS.gene81804 | PPI |
| MS.gene81804 | MS.gene056920 | PPI |
| MS.gene056924 | MS.gene81804 | PPI |
| MS.gene034840 | MS.gene81804 | PPI |
| MS.gene065728 | MS.gene81804 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81804.t1 | MTR_5g076480 | 96.651 | 209 | 6 | 1 | 1 | 208 | 1 | 209 | 2.01e-147 | 408 |
| MS.gene81804.t1 | MTR_3g064310 | 61.290 | 217 | 74 | 5 | 1 | 208 | 2 | 217 | 2.83e-87 | 256 |
| MS.gene81804.t1 | MTR_0160s0040 | 34.682 | 173 | 109 | 3 | 22 | 192 | 6 | 176 | 7.64e-35 | 122 |
| MS.gene81804.t1 | MTR_2g026530 | 29.885 | 174 | 112 | 4 | 34 | 198 | 8 | 180 | 2.26e-19 | 82.0 |
| MS.gene81804.t1 | MTR_2g026530 | 29.885 | 174 | 112 | 4 | 34 | 198 | 28 | 200 | 4.21e-19 | 81.6 |
| MS.gene81804.t1 | MTR_4g081880 | 33.913 | 115 | 74 | 1 | 68 | 180 | 66 | 180 | 1.34e-13 | 66.6 |
| MS.gene81804.t1 | MTR_7g011090 | 27.778 | 180 | 120 | 4 | 11 | 181 | 2 | 180 | 7.32e-13 | 64.7 |
| MS.gene81804.t1 | MTR_0004s0210 | 28.477 | 151 | 97 | 4 | 35 | 180 | 6 | 150 | 4.49e-12 | 62.0 |
| MS.gene81804.t1 | MTR_7g083120 | 23.636 | 165 | 119 | 2 | 29 | 186 | 22 | 186 | 1.24e-11 | 61.2 |
| MS.gene81804.t1 | MTR_0693s0030 | 27.907 | 129 | 84 | 1 | 70 | 189 | 46 | 174 | 5.98e-11 | 59.3 |
| MS.gene81804.t1 | MTR_5g041900 | 31.579 | 114 | 76 | 1 | 70 | 181 | 67 | 180 | 6.04e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81804.t1 | AT1G17200 | 59.444 | 180 | 70 | 3 | 29 | 206 | 24 | 202 | 8.81e-71 | 214 |
| MS.gene81804.t1 | AT3G14380 | 54.194 | 155 | 70 | 1 | 38 | 191 | 24 | 178 | 1.78e-49 | 159 |
| MS.gene81804.t1 | AT1G17200 | 54.128 | 109 | 48 | 2 | 99 | 206 | 1 | 108 | 2.78e-34 | 118 |
| MS.gene81804.t1 | AT5G54980 | 34.337 | 166 | 104 | 3 | 34 | 196 | 29 | 192 | 7.81e-23 | 91.3 |
| MS.gene81804.t1 | AT4G16442 | 30.723 | 166 | 106 | 3 | 34 | 190 | 8 | 173 | 2.45e-16 | 73.9 |
| MS.gene81804.t1 | AT2G35760 | 26.471 | 204 | 133 | 4 | 4 | 198 | 5 | 200 | 6.69e-15 | 70.5 |
| MS.gene81804.t1 | AT1G03700 | 28.105 | 153 | 99 | 4 | 41 | 188 | 13 | 159 | 4.94e-13 | 64.7 |
| MS.gene81804.t1 | AT1G14160 | 33.613 | 119 | 77 | 1 | 68 | 184 | 88 | 206 | 2.42e-11 | 61.2 |
Find 44 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCGATCTTGGTGCTTTC+AGG | 0.152073 | 5.2:-65090585 | MS.gene81804:intron |
| TTTCACTCATATCCTCTTAT+AGG | 0.157418 | 5.2:-65087928 | MS.gene81804:CDS |
| GTTCTATACCTTGCTGAATA+TGG | 0.284110 | 5.2:-65088061 | MS.gene81804:CDS |
| TCTGTTGCCTATTCCGATCT+TGG | 0.310861 | 5.2:-65090595 | MS.gene81804:CDS |
| TACAAGATCTTCCATTGAAA+TGG | 0.311295 | 5.2:-65090764 | MS.gene81804:CDS |
| TTCAACTATGCCTAAGGCTT+GGG | 0.359587 | 5.2:-65089599 | MS.gene81804:CDS |
| TGGGAGTTGTTGACTTGTGC+TGG | 0.377358 | 5.2:+65087884 | None:intergenic |
| AGTTCAGCTTGTGGATCTTT+CGG | 0.384816 | 5.2:-65088019 | MS.gene81804:CDS |
| GAAAGCACCAAGATCGGAAT+AGG | 0.406731 | 5.2:+65090588 | None:intergenic |
| AATAACATGGACAAGGGAAT+TGG | 0.407691 | 5.2:-65090799 | None:intergenic |
| TACTGAATTTCCCATTTCAA+TGG | 0.408880 | 5.2:+65090753 | None:intergenic |
| GCTGTTACACATAAACAAAT+AGG | 0.414973 | 5.2:+65090661 | None:intergenic |
| AATTCTGAGGAAAATGAGTA+TGG | 0.430525 | 5.2:-65090619 | MS.gene81804:CDS |
| ACTAGCATTGCTGCTTTCAA+TGG | 0.434764 | 5.2:-65087854 | MS.gene81804:CDS |
| GTAGTTGATGAAGAATTTGA+AGG | 0.438687 | 5.2:-65090733 | MS.gene81804:CDS |
| CTTCAACTATGCCTAAGGCT+TGG | 0.448431 | 5.2:-65089600 | MS.gene81804:CDS |
| TTTGCTAAATAGCCTATAAG+AGG | 0.458378 | 5.2:+65087916 | None:intergenic |
| AGCTTCATTGCTACGTATTG+TGG | 0.458863 | 5.2:-65090704 | MS.gene81804:CDS |
| ACAAGATCTTCCATTGAAAT+GGG | 0.467090 | 5.2:-65090763 | MS.gene81804:CDS |
| ACCTACATAATCATAGCTGC+TGG | 0.497769 | 5.2:-65088100 | MS.gene81804:CDS |
| CCGTCCTTCAACTATGCCTA+AGG | 0.510562 | 5.2:-65089605 | MS.gene81804:CDS |
| CTTAGGCATAGTTGAAGGAC+GGG | 0.514097 | 5.2:+65089606 | None:intergenic |
| AGTTATCACATTTATTGCTG+TGG | 0.518652 | 5.2:-65087966 | MS.gene81804:CDS |
| TCCAGCAGCTATGATTATGT+AGG | 0.551499 | 5.2:+65088099 | None:intergenic |
| CATGCCAATGGTATTTGTGC+AGG | 0.554512 | 5.2:-65089664 | MS.gene81804:CDS |
| CAGCAATGCTAGTGTCCTTG+TGG | 0.563670 | 5.2:+65087864 | None:intergenic |
| GAATATGGAGTCCCTACTGC+AGG | 0.568100 | 5.2:-65088046 | MS.gene81804:CDS |
| AGCAATGCTAGTGTCCTTGT+GGG | 0.569064 | 5.2:+65087865 | None:intergenic |
| ATACCTGAAAGCACCAAGAT+CGG | 0.574879 | 5.2:+65090582 | None:intergenic |
| GCTGAACTCCATCCTGCAGT+AGG | 0.577795 | 5.2:+65088034 | None:intergenic |
| CTGAACTCCATCCTGCAGTA+GGG | 0.588006 | 5.2:+65088035 | None:intergenic |
| CATTATGCTGAAGAATTCTG+AGG | 0.589250 | 5.2:-65090632 | MS.gene81804:CDS |
| CAAGCCTTAGGCATAGTTGA+AGG | 0.590779 | 5.2:+65089601 | None:intergenic |
| AGGTATTTGGTGCATGCCAA+TGG | 0.592552 | 5.2:-65089676 | MS.gene81804:CDS |
| ATATCCTGCACAAATACCAT+TGG | 0.600027 | 5.2:+65089660 | None:intergenic |
| CCTTAGGCATAGTTGAAGGA+CGG | 0.602862 | 5.2:+65089605 | None:intergenic |
| GCAGGATGGAGTTCAGCTTG+TGG | 0.603477 | 5.2:-65088028 | MS.gene81804:CDS |
| ATGGAGTCCCTACTGCAGGA+TGG | 0.616514 | 5.2:-65088042 | MS.gene81804:CDS |
| CACAATAATAACATGGACAA+GGG | 0.617085 | 5.2:-65090805 | None:intergenic |
| GCACAATAATAACATGGACA+AGG | 0.662151 | 5.2:-65090806 | None:intergenic |
| TAGGGACTCCATATTCAGCA+AGG | 0.672967 | 5.2:+65088053 | None:intergenic |
| ACAAGTCAACAACTCCCACA+AGG | 0.673400 | 5.2:-65087879 | MS.gene81804:CDS |
| TGCTGGAGCTGTATTAACAG+AGG | 0.687633 | 5.2:-65088083 | MS.gene81804:CDS |
| TTAGGCATAGTTGAAGGACG+GGG | 0.688488 | 5.2:+65089607 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAAATAAAAATTATAG+GGG | - | chr5.2:65089816-65089835 | MS.gene81804:intron | 10.0% |
| !! | AAGTAAATAAAAATTATAAG+GGG | - | chr5.2:65090227-65090246 | MS.gene81804:intron | 10.0% |
| !! | CAAAAGTAAATAAAAATTAT+AGG | - | chr5.2:65089814-65089833 | MS.gene81804:intron | 10.0% |
| !!! | ATTTTTACATCAAAATTTAA+AGG | + | chr5.2:65090435-65090454 | None:intergenic | 10.0% |
| !! | AAAAAAATCCAAATATTACA+GGG | - | chr5.2:65089974-65089993 | MS.gene81804:intron | 15.0% |
| !! | AAATAATATCCTTATGTTTA+TGG | + | chr5.2:65088144-65088163 | None:intergenic | 15.0% |
| !! | AAGTAAATAAAAATTATAGG+GGG | - | chr5.2:65089817-65089836 | MS.gene81804:intron | 15.0% |
| !! | AGCAAAAAAACTATAAAATT+TGG | + | chr5.2:65088106-65088125 | None:intergenic | 15.0% |
| !! | CTGTTAAATATTCATATAAA+AGG | - | chr5.2:65089749-65089768 | MS.gene81804:intron | 15.0% |
| !! | TAAAAAAATCCAAATATTAC+AGG | - | chr5.2:65089973-65089992 | MS.gene81804:intron | 15.0% |
| !!! | AAATACAAATTTTATCTAGA+GGG | + | chr5.2:65088595-65088614 | None:intergenic | 15.0% |
| !!! | GAATTATATTTTAAGTCAAT+AGG | - | chr5.2:65088699-65088718 | MS.gene81804:intron | 15.0% |
| !!! | TAAATACAAATTTTATCTAG+AGG | + | chr5.2:65088596-65088615 | None:intergenic | 15.0% |
| !! | AACATTCAAATTGAAAATGA+GGG | - | chr5.2:65089844-65089863 | MS.gene81804:intron | 20.0% |
| !! | AAGGATAGAAAATAATTATC+AGG | - | chr5.2:65089710-65089729 | MS.gene81804:intron | 20.0% |
| !! | ACAAAACAAAATAACTAGTT+AGG | - | chr5.2:65088842-65088861 | MS.gene81804:intron | 20.0% |
| !! | GAATAAGAAAAATACTCAAA+AGG | - | chr5.2:65089691-65089710 | MS.gene81804:intron | 20.0% |
| !! | TAACATTCAAATTGAAAATG+AGG | - | chr5.2:65089843-65089862 | MS.gene81804:intron | 20.0% |
| !! | TATCTAAGAATTAACCATAT+TGG | - | chr5.2:65089664-65089683 | MS.gene81804:CDS | 20.0% |
| !! | TTTCAAAGAACTAATTTGAT+TGG | - | chr5.2:65088378-65088397 | MS.gene81804:intron | 20.0% |
| !! | TTTCTTATTCATTACCAATA+TGG | + | chr5.2:65089681-65089700 | None:intergenic | 20.0% |
| !!! | GTATTTTAATCAGTTTGTAT+AGG | - | chr5.2:65089326-65089345 | MS.gene81804:intron | 20.0% |
| !!! | TATTTAATTGTTTTGAGCTA+AGG | - | chr5.2:65088159-65088178 | MS.gene81804:intron | 20.0% |
| !!! | TTTGACTAACTTTTGAAATA+AGG | - | chr5.2:65088281-65088300 | MS.gene81804:intron | 20.0% |
| !!! | TTTTTTTGCTCTACTTAAAT+TGG | - | chr5.2:65088116-65088135 | MS.gene81804:intron | 20.0% |
| !!! | TTTTTTTTTTGCTCATTGAT+AGG | - | chr5.2:65088431-65088450 | MS.gene81804:intron | 20.0% |
| ! | AAATTGGATCCATAAACATA+AGG | - | chr5.2:65088132-65088151 | MS.gene81804:intron | 25.0% |
| ! | ACATCAAAATTTAAAGGTCT+GGG | + | chr5.2:65090429-65090448 | None:intergenic | 25.0% |
| ! | AGAAACTAGTTAAATTGAGT+TGG | + | chr5.2:65088319-65088338 | None:intergenic | 25.0% |
| ! | AGGGTTCTATAAATATTCTA+GGG | - | chr5.2:65089863-65089882 | MS.gene81804:intron | 25.0% |
| ! | ATATTGAATGATTGCATGAA+GGG | + | chr5.2:65089550-65089569 | None:intergenic | 25.0% |
| ! | ATTTGTGTTTGATATCCTAT+AGG | - | chr5.2:65090515-65090534 | MS.gene81804:intron | 25.0% |
| ! | TAATACCATCACACATTAAA+TGG | + | chr5.2:65089447-65089466 | None:intergenic | 25.0% |
| ! | TACATCAAAATTTAAAGGTC+TGG | + | chr5.2:65090430-65090449 | None:intergenic | 25.0% |
| ! | TCCAAACACTAAAATAAGTT+TGG | + | chr5.2:65088934-65088953 | None:intergenic | 25.0% |
| ! | TTCTTAGATACCTTAAAGTT+TGG | + | chr5.2:65089654-65089673 | None:intergenic | 25.0% |
| !! | TTTTGCATATTGTAGGTATT+TGG | - | chr5.2:65088954-65088973 | MS.gene81804:intron | 25.0% |
| !!! | AATTTGCATCTTACTTTTTC+TGG | - | chr5.2:65089376-65089395 | MS.gene81804:intron | 25.0% |
| !!! | ACCAAACTTATTTTAGTGTT+TGG | - | chr5.2:65088930-65088949 | MS.gene81804:intron | 25.0% |
| AATTTGGCAAACTTCATTGA+TGG | + | chr5.2:65088090-65088109 | None:intergenic | 30.0% | |
| ACAACATTACCCATAATGTT+TGG | - | chr5.2:65089513-65089532 | MS.gene81804:intron | 30.0% | |
| ACAAGATCTTCCATTGAAAT+GGG | - | chr5.2:65087880-65087899 | MS.gene81804:CDS | 30.0% | |
| AGTTATCACATTTATTGCTG+TGG | - | chr5.2:65090677-65090696 | MS.gene81804:CDS | 30.0% | |
| ATTCATACTGAATAGGTAGA+AGG | - | chr5.2:65089946-65089965 | MS.gene81804:intron | 30.0% | |
| GAGCAAGTAAAACAATAGTT+AGG | - | chr5.2:65088817-65088836 | MS.gene81804:intron | 30.0% | |
| GAGGGTTCTATAAATATTCT+AGG | - | chr5.2:65089862-65089881 | MS.gene81804:intron | 30.0% | |
| GATATTGAATGATTGCATGA+AGG | + | chr5.2:65089551-65089570 | None:intergenic | 30.0% | |
| GCTGTTACACATAAACAAAT+AGG | + | chr5.2:65087985-65088004 | None:intergenic | 30.0% | |
| GGGTTCTATAAATATTCTAG+GGG | - | chr5.2:65089864-65089883 | MS.gene81804:intron | 30.0% | |
| GGTTCTATAAATATTCTAGG+GGG | - | chr5.2:65089865-65089884 | MS.gene81804:intron | 30.0% | |
| TACAAGATCTTCCATTGAAA+TGG | - | chr5.2:65087879-65087898 | MS.gene81804:CDS | 30.0% | |
| TACTGAATTTCCCATTTCAA+TGG | + | chr5.2:65087893-65087912 | None:intergenic | 30.0% | |
| TACTTCCATTTAATGTGTGA+TGG | - | chr5.2:65089439-65089458 | MS.gene81804:intron | 30.0% | |
| TAGATACCTTAAAGTTTGGT+TGG | + | chr5.2:65089650-65089669 | None:intergenic | 30.0% | |
| TGAAATCCAACCAAACTTTA+AGG | - | chr5.2:65089641-65089660 | MS.gene81804:CDS | 30.0% | |
| TTCATACTGAATAGGTAGAA+GGG | - | chr5.2:65089947-65089966 | MS.gene81804:intron | 30.0% | |
| TTCTAGCATTCATACTGAAT+AGG | - | chr5.2:65089939-65089958 | MS.gene81804:intron | 30.0% | |
| TTCTTAGATACCTTAAAGCT+TGG | - | chr5.2:65088561-65088580 | MS.gene81804:intron | 30.0% | |
| TTGACAAATGAAAACTCACT+TGG | - | chr5.2:65088227-65088246 | MS.gene81804:intron | 30.0% | |
| TTTCACTCATATCCTCTTAT+AGG | - | chr5.2:65090715-65090734 | MS.gene81804:CDS | 30.0% | |
| TTTCTAACATTGAGTGATTG+AGG | - | chr5.2:65088334-65088353 | MS.gene81804:intron | 30.0% | |
| TTTGCTAAATAGCCTATAAG+AGG | + | chr5.2:65090730-65090749 | None:intergenic | 30.0% | |
| ! | AATTCTGAGGAAAATGAGTA+TGG | - | chr5.2:65088024-65088043 | MS.gene81804:CDS | 30.0% |
| ! | GTTTGGATTTTGCATATTGT+AGG | - | chr5.2:65088947-65088966 | MS.gene81804:intron | 30.0% |
| ! | TTTCAAGTAAGATATTGACC+TGG | + | chr5.2:65089086-65089105 | None:intergenic | 30.0% |
| !! | AATGGAAGTACTTGTCAATA+TGG | + | chr5.2:65089429-65089448 | None:intergenic | 30.0% |
| !! | GGACACAATTTTAAGTCAAT+AGG | - | chr5.2:65088720-65088739 | MS.gene81804:intron | 30.0% |
| !! | GTAGTTGATGAAGAATTTGA+AGG | - | chr5.2:65087910-65087929 | MS.gene81804:CDS | 30.0% |
| !!! | ATTGTTTTGAGCTAAGGTTT+TGG | - | chr5.2:65088165-65088184 | MS.gene81804:intron | 30.0% |
| ACATGCTCAACCAAACATTA+TGG | + | chr5.2:65089526-65089545 | None:intergenic | 35.0% | |
| ATATCCTGCACAAATACCAT+TGG | + | chr5.2:65088986-65089005 | None:intergenic | 35.0% | |
| CATGCTCAACCAAACATTAT+GGG | + | chr5.2:65089525-65089544 | None:intergenic | 35.0% | |
| CATTATGCTGAAGAATTCTG+AGG | - | chr5.2:65088011-65088030 | MS.gene81804:CDS | 35.0% | |
| CTTGCTCTATGTTTCTTTGA+TGG | + | chr5.2:65088804-65088823 | None:intergenic | 35.0% | |
| GATACCTTAAAGCTTGGTAT+CGG | - | chr5.2:65088567-65088586 | MS.gene81804:intron | 35.0% | |
| GCAATATATTTCATGTCTGG+TGG | + | chr5.2:65088898-65088917 | None:intergenic | 35.0% | |
| GCTGCAATATATTTCATGTC+TGG | + | chr5.2:65088901-65088920 | None:intergenic | 35.0% | |
| GTTCTATACCTTGCTGAATA+TGG | - | chr5.2:65090582-65090601 | MS.gene81804:intron | 35.0% | |
| TACACAAGTTAATTCACGCT+GGG | - | chr5.2:65089202-65089221 | MS.gene81804:intron | 35.0% | |
| TTATGTAGGTTTGCACCTAT+AGG | + | chr5.2:65090533-65090552 | None:intergenic | 35.0% | |
| ! | CTCTATGTTTCTTTGATGGT+TGG | + | chr5.2:65088800-65088819 | None:intergenic | 35.0% |
| ! | GTTGGATTTCAGTAACTTGT+TGG | + | chr5.2:65089632-65089651 | None:intergenic | 35.0% |
| !!! | CTTACTTTTTCTGGAATGAG+AGG | - | chr5.2:65089385-65089404 | MS.gene81804:intron | 35.0% |
| !!! | TAGGAGTGAGTGTTTTTAGT+TGG | - | chr5.2:65089345-65089364 | MS.gene81804:intron | 35.0% |
| AAAAAGAAAGCCCAAGCCTT+AGG | + | chr5.2:65089057-65089076 | None:intergenic | 40.0% | |
| AACGTGACTTAAGTCACGTT+GGG | - | chr5.2:65089271-65089290 | MS.gene81804:intron | 40.0% | |
| ACCAGCTACCCTGTAATATT+TGG | + | chr5.2:65089985-65090004 | None:intergenic | 40.0% | |
| ACCTACATAATCATAGCTGC+TGG | - | chr5.2:65090543-65090562 | MS.gene81804:intron | 40.0% | |
| ACTTGGTCATTTGATAGAGG+AGG | - | chr5.2:65088244-65088263 | MS.gene81804:intron | 40.0% | |
| AGCTTCATTGCTACGTATTG+TGG | - | chr5.2:65087939-65087958 | MS.gene81804:CDS | 40.0% | |
| AGTGCTAGATGAGGATTCAA+CGG | - | chr5.2:65088751-65088770 | MS.gene81804:intron | 40.0% | |
| AGTTCAGCTTGTGGATCTTT+CGG | - | chr5.2:65090624-65090643 | MS.gene81804:CDS | 40.0% | |
| CACACAAGTTAACTCACGTT+CGG | - | chr5.2:65089162-65089181 | MS.gene81804:intron | 40.0% | |
| CTACACAAGTTAATTCACGC+TGG | - | chr5.2:65089201-65089220 | MS.gene81804:intron | 40.0% | |
| CTCACTTGGTCATTTGATAG+AGG | - | chr5.2:65088241-65088260 | MS.gene81804:intron | 40.0% | |
| CTTGGTCATTTGATAGAGGA+GGG | - | chr5.2:65088245-65088264 | MS.gene81804:intron | 40.0% | |
| GAGTGATTGAGGAGATTTGA+AGG | - | chr5.2:65088345-65088364 | MS.gene81804:intron | 40.0% | |
| TCCAAATATTACAGGGTAGC+TGG | - | chr5.2:65089981-65090000 | MS.gene81804:intron | 40.0% | |
| TCCAGCAGCTATGATTATGT+AGG | + | chr5.2:65090547-65090566 | None:intergenic | 40.0% | |
| TTCAACTATGCCTAAGGCTT+GGG | - | chr5.2:65089044-65089063 | MS.gene81804:intron | 40.0% | |
| ! | TATGAGAGTGAGCGTTTTGT+TGG | + | chr5.2:65089121-65089140 | None:intergenic | 40.0% |
| ! | TTAAGTCACGTTGGCTACAT+TGG | + | chr5.2:65089263-65089282 | None:intergenic | 40.0% |
| !! | AACGTGAGTTAACTTGTGTG+CGG | + | chr5.2:65089162-65089181 | None:intergenic | 40.0% |
| !! | AACTTGTGTGCGGAGTATTT+TGG | + | chr5.2:65089152-65089171 | None:intergenic | 40.0% |
| !! | ACTAGCATTGCTGCTTTCAA+TGG | - | chr5.2:65090789-65090808 | MS.gene81804:CDS | 40.0% |
| !! | ATACCTGAAAGCACCAAGAT+CGG | + | chr5.2:65088064-65088083 | None:intergenic | 40.0% |
| !! | ATGAGAGTGAGCGTTTTGTT+GGG | + | chr5.2:65089120-65089139 | None:intergenic | 40.0% |
| !! | CAGCGTGAATTAACTTGTGT+AGG | + | chr5.2:65089203-65089222 | None:intergenic | 40.0% |
| ACAAGTCAACAACTCCCACA+AGG | - | chr5.2:65090764-65090783 | MS.gene81804:CDS | 45.0% | |
| AGCAATGCTAGTGTCCTTGT+GGG | + | chr5.2:65090781-65090800 | None:intergenic | 45.0% | |
| CAACGTGACTTAAGTCACGT+TGG | - | chr5.2:65089270-65089289 | MS.gene81804:intron | 45.0% | |
| CAACGTGACTTAAGTCACGT+TGG | + | chr5.2:65089289-65089270 | None:intergenic | 45.0% | |
| CAAGCCTTAGGCATAGTTGA+AGG | + | chr5.2:65089045-65089064 | None:intergenic | 45.0% | |
| CATGCCAATGGTATTTGTGC+AGG | - | chr5.2:65088979-65088998 | MS.gene81804:intron | 45.0% | |
| CCTTAGGCATAGTTGAAGGA+CGG | + | chr5.2:65089041-65089060 | None:intergenic | 45.0% | |
| CTTAGGCATAGTTGAAGGAC+GGG | + | chr5.2:65089040-65089059 | None:intergenic | 45.0% | |
| CTTCAACTATGCCTAAGGCT+TGG | - | chr5.2:65089043-65089062 | MS.gene81804:intron | 45.0% | |
| GGAACCGATACCAAGCTTTA+AGG | + | chr5.2:65088574-65088593 | None:intergenic | 45.0% | |
| TAGGGACTCCATATTCAGCA+AGG | + | chr5.2:65090593-65090612 | None:intergenic | 45.0% | |
| TCTGTTGCCTATTCCGATCT+TGG | - | chr5.2:65088048-65088067 | MS.gene81804:CDS | 45.0% | |
| TGCTGGAGCTGTATTAACAG+AGG | - | chr5.2:65090560-65090579 | MS.gene81804:intron | 45.0% | |
| TTAGGCATAGTTGAAGGACG+GGG | + | chr5.2:65089039-65089058 | None:intergenic | 45.0% | |
| ! | GGCTTTCTTTTTGCTTGACC+AGG | - | chr5.2:65089065-65089084 | MS.gene81804:intron | 45.0% |
| !! | AGGTATTTGGTGCATGCCAA+TGG | - | chr5.2:65088967-65088986 | MS.gene81804:intron | 45.0% |
| !! | ATTCCGATCTTGGTGCTTTC+AGG | - | chr5.2:65088058-65088077 | MS.gene81804:CDS | 45.0% |
| !! | GAAAGCACCAAGATCGGAAT+AGG | + | chr5.2:65088058-65088077 | None:intergenic | 45.0% |
| !! | GACACAAGAAGTGCTAGATG+AGG | - | chr5.2:65088742-65088761 | MS.gene81804:intron | 45.0% |
| !! | AAAAGTAAATAAAAATTATA+AGG | - | chr5.2:65089815-65089834 | MS.gene81804:intron | 5.0% |
| !! | AAAAGTAAATAAAAATTATA+GGG | - | chr5.2:65089815-65089834 | MS.gene81804:intron | 5.0% |
| !! | AAAGTAAATAAAAATTATAA+GGG | - | chr5.2:65090226-65090245 | MS.gene81804:intron | 5.0% |
| !!! | TCTAAAATATTAATTTTATT+AGG | - | chr5.2:65089485-65089504 | MS.gene81804:intron | 5.0% |
| CAGCAATGCTAGTGTCCTTG+TGG | + | chr5.2:65090782-65090801 | None:intergenic | 50.0% | |
| CCGTCCTTCAACTATGCCTA+AGG | - | chr5.2:65089038-65089057 | MS.gene81804:intron | 50.0% | |
| CTCCGTGACTTAAGTCACGT+GGG | - | chr5.2:65089302-65089321 | MS.gene81804:intron | 50.0% | |
| CTGAACTCCATCCTGCAGTA+GGG | + | chr5.2:65090611-65090630 | None:intergenic | 50.0% | |
| GAATATGGAGTCCCTACTGC+AGG | - | chr5.2:65090597-65090616 | MS.gene81804:CDS | 50.0% | |
| TCCGTGACTTAAGTCACGTG+GGG | - | chr5.2:65089303-65089322 | MS.gene81804:intron | 50.0% | |
| !! | TGGGAGTTGTTGACTTGTGC+TGG | + | chr5.2:65090762-65090781 | None:intergenic | 50.0% |
| ATGGAGTCCCTACTGCAGGA+TGG | - | chr5.2:65090601-65090620 | MS.gene81804:CDS | 55.0% | |
| CCACGTGACTTAAGTCACGG+AGG | + | chr5.2:65089304-65089323 | None:intergenic | 55.0% | |
| CCCCCACGTGACTTAAGTCA+CGG | + | chr5.2:65089307-65089326 | None:intergenic | 55.0% | |
| CCGTGACTTAAGTCACGTGG+GGG | - | chr5.2:65089304-65089323 | MS.gene81804:intron | 55.0% | |
| CCTCCGTGACTTAAGTCACG+TGG | - | chr5.2:65089301-65089320 | MS.gene81804:intron | 55.0% | |
| GCAGGATGGAGTTCAGCTTG+TGG | - | chr5.2:65090615-65090634 | MS.gene81804:CDS | 55.0% | |
| GCTGAACTCCATCCTGCAGT+AGG | + | chr5.2:65090612-65090631 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 65087850 | 65090815 | 65087850 | ID=MS.gene81804 |
| chr5.2 | mRNA | 65087850 | 65090815 | 65087850 | ID=MS.gene81804.t1;Parent=MS.gene81804 |
| chr5.2 | exon | 65090586 | 65090815 | 65090586 | ID=MS.gene81804.t1.exon1;Parent=MS.gene81804.t1 |
| chr5.2 | CDS | 65090586 | 65090815 | 65090586 | ID=cds.MS.gene81804.t1;Parent=MS.gene81804.t1 |
| chr5.2 | exon | 65089579 | 65089696 | 65089579 | ID=MS.gene81804.t1.exon2;Parent=MS.gene81804.t1 |
| chr5.2 | CDS | 65089579 | 65089696 | 65089579 | ID=cds.MS.gene81804.t1;Parent=MS.gene81804.t1 |
| chr5.2 | exon | 65087850 | 65088128 | 65087850 | ID=MS.gene81804.t1.exon3;Parent=MS.gene81804.t1 |
| chr5.2 | CDS | 65087850 | 65088128 | 65087850 | ID=cds.MS.gene81804.t1;Parent=MS.gene81804.t1 |
| Gene Sequence |
| Protein sequence |
