Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26200.t1 | XP_003616135.1 | 97.1 | 209 | 5 | 1 | 1 | 208 | 1 | 209 | 6.00E-105 | 390.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26200.t1 | C6TCJ2 | 67.9 | 209 | 62 | 3 | 1 | 208 | 2 | 206 | 1.4e-70 | 267.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26200.t1 | G7KFQ6 | 97.1 | 209 | 5 | 1 | 1 | 208 | 1 | 209 | 4.4e-105 | 390.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene26200 | 0.824459 | 7.98E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene26200 | 0.805945 | 1.04E-49 | -1.69E-46 |
| MS.gene049609 | MS.gene26200 | 0.804268 | 2.34E-49 | -1.69E-46 |
| MS.gene049828 | MS.gene26200 | 0.827689 | 1.36E-54 | -1.69E-46 |
| MS.gene049907 | MS.gene26200 | 0.836571 | 8.66E-57 | -1.69E-46 |
| MS.gene050499 | MS.gene26200 | 0.809523 | 1.81E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene26200 | 0.817344 | 3.46E-52 | -1.69E-46 |
| MS.gene050538 | MS.gene26200 | 0.812063 | 5.12E-51 | -1.69E-46 |
| MS.gene050581 | MS.gene26200 | 0.817567 | 3.08E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene26200 | 0.802187 | 6.32E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene26200 | 0.803828 | 2.89E-49 | -1.69E-46 |
| MS.gene050770 | MS.gene26200 | 0.806102 | 9.68E-50 | -1.69E-46 |
| MS.gene050772 | MS.gene26200 | 0.83403 | 3.79E-56 | -1.69E-46 |
| MS.gene05100 | MS.gene26200 | 0.800981 | 1.12E-48 | -1.69E-46 |
| MS.gene05105 | MS.gene26200 | 0.822691 | 2.07E-53 | -1.69E-46 |
| MS.gene051255 | MS.gene26200 | 0.825391 | 4.81E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene26200 | 0.811802 | 5.83E-51 | -1.69E-46 |
| MS.gene051694 | MS.gene26200 | 0.80048 | 1.41E-48 | -1.69E-46 |
| MS.gene051858 | MS.gene26200 | 0.821015 | 5.05E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene26200 | 0.824977 | 6.02E-54 | -1.69E-46 |
| MS.gene052484 | MS.gene26200 | 0.806999 | 6.26E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene26200 | 0.808808 | 2.58E-50 | -1.69E-46 |
| MS.gene052670 | MS.gene26200 | 0.834536 | 2.83E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene26200 | 0.838354 | 3.02E-57 | -1.69E-46 |
| MS.gene053207 | MS.gene26200 | 0.830444 | 2.93E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene26200 | 0.818305 | 2.10E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene26200 | 0.80593 | 1.05E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene26200 | 0.806961 | 6.38E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene26200 | 0.810323 | 1.22E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene26200 | 0.813801 | 2.13E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene26200 | 0.827614 | 1.42E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene26200 | 0.805834 | 1.10E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene26200 | 0.824256 | 8.91E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene26200 | 0.814933 | 1.20E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene26200 | 0.831334 | 1.77E-55 | -1.69E-46 |
| MS.gene055647 | MS.gene26200 | 0.811623 | 6.38E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene26200 | 0.837323 | 5.56E-57 | -1.69E-46 |
| MS.gene05602 | MS.gene26200 | 0.819917 | 9.03E-53 | -1.69E-46 |
| MS.gene056083 | MS.gene26200 | 0.80314 | 4.02E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene26200 | 0.819155 | 1.35E-52 | -1.69E-46 |
| MS.gene056449 | MS.gene26200 | 0.81989 | 9.16E-53 | -1.69E-46 |
| MS.gene056611 | MS.gene26200 | 0.847748 | 9.50E-60 | -1.69E-46 |
| MS.gene056942 | MS.gene26200 | 0.828387 | 9.25E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene26200 | 0.814782 | 1.29E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene26200 | 0.809672 | 1.69E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene26200 | 0.802198 | 6.29E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene26200 | 0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene26200 | 0.803889 | 2.81E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene26200 | 0.807981 | 3.88E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene26200 | 0.801089 | 1.06E-48 | -1.69E-46 |
| MS.gene059029 | MS.gene26200 | 0.80183 | 7.48E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene26200 | 0.803732 | 3.03E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene26200 | 0.819416 | 1.17E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene26200 | 0.807031 | 6.16E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene26200 | 0.804462 | 2.14E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene26200 | 0.848353 | 6.47E-60 | -1.69E-46 |
| MS.gene059718 | MS.gene26200 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene26200 | 0.821096 | 4.84E-53 | -1.69E-46 |
| MS.gene060356 | MS.gene26200 | 0.855095 | 7.94E-62 | -1.69E-46 |
| MS.gene060482 | MS.gene26200 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene26200 | 0.835076 | 2.07E-56 | -1.69E-46 |
| MS.gene061171 | MS.gene26200 | 0.800127 | 1.67E-48 | -1.69E-46 |
| MS.gene061200 | MS.gene26200 | 0.841684 | 4.09E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26200 | MS.gene81770 | PPI |
| MS.gene81774 | MS.gene26200 | PPI |
| MS.gene26200 | MS.gene056920 | PPI |
| MS.gene056924 | MS.gene26200 | PPI |
| MS.gene056925 | MS.gene26200 | PPI |
| MS.gene034840 | MS.gene26200 | PPI |
| MS.gene065729 | MS.gene26200 | PPI |
| MS.gene034839 | MS.gene26200 | PPI |
| MS.gene26200 | MS.gene065728 | PPI |
| MS.gene034836 | MS.gene26200 | PPI |
| MS.gene26200 | MS.gene056923 | PPI |
| MS.gene034838 | MS.gene26200 | PPI |
| MS.gene26200 | MS.gene065724 | PPI |
| MS.gene26200 | MS.gene81771 | PPI |
| MS.gene26200 | MS.gene056922 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26200.t1 | MTR_5g076480 | 97.129 | 209 | 5 | 1 | 1 | 208 | 1 | 209 | 1.05e-147 | 409 |
| MS.gene26200.t1 | MTR_3g064310 | 61.751 | 217 | 73 | 5 | 1 | 208 | 2 | 217 | 1.47e-87 | 257 |
| MS.gene26200.t1 | MTR_0160s0040 | 34.682 | 173 | 109 | 3 | 22 | 192 | 6 | 176 | 1.57e-34 | 121 |
| MS.gene26200.t1 | MTR_2g026530 | 29.885 | 174 | 112 | 4 | 34 | 198 | 8 | 180 | 2.19e-19 | 82.0 |
| MS.gene26200.t1 | MTR_2g026530 | 29.885 | 174 | 112 | 4 | 34 | 198 | 28 | 200 | 4.63e-19 | 81.6 |
| MS.gene26200.t1 | MTR_4g081880 | 33.913 | 115 | 74 | 1 | 68 | 180 | 66 | 180 | 1.56e-13 | 66.6 |
| MS.gene26200.t1 | MTR_7g011090 | 27.778 | 180 | 120 | 4 | 11 | 181 | 2 | 180 | 8.62e-13 | 64.7 |
| MS.gene26200.t1 | MTR_0004s0210 | 27.815 | 151 | 98 | 4 | 35 | 180 | 6 | 150 | 1.28e-11 | 60.8 |
| MS.gene26200.t1 | MTR_7g083120 | 23.030 | 165 | 120 | 2 | 29 | 186 | 22 | 186 | 3.40e-11 | 60.1 |
| MS.gene26200.t1 | MTR_0693s0030 | 27.907 | 129 | 84 | 1 | 70 | 189 | 46 | 174 | 5.09e-11 | 59.7 |
| MS.gene26200.t1 | MTR_5g041900 | 31.579 | 114 | 76 | 1 | 70 | 181 | 67 | 180 | 5.52e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26200.t1 | AT1G17200 | 60.000 | 180 | 69 | 3 | 29 | 206 | 24 | 202 | 3.19e-71 | 215 |
| MS.gene26200.t1 | AT3G14380 | 54.839 | 155 | 69 | 1 | 38 | 191 | 24 | 178 | 6.21e-50 | 160 |
| MS.gene26200.t1 | AT1G17200 | 55.046 | 109 | 47 | 2 | 99 | 206 | 1 | 108 | 1.27e-34 | 119 |
| MS.gene26200.t1 | AT5G54980 | 34.337 | 166 | 104 | 3 | 34 | 196 | 29 | 192 | 8.87e-23 | 91.3 |
| MS.gene26200.t1 | AT4G16442 | 30.723 | 166 | 106 | 3 | 34 | 190 | 8 | 173 | 5.25e-16 | 73.2 |
| MS.gene26200.t1 | AT2G35760 | 26.471 | 204 | 133 | 4 | 4 | 198 | 5 | 200 | 1.31e-14 | 69.7 |
| MS.gene26200.t1 | AT1G03700 | 28.105 | 153 | 99 | 4 | 41 | 188 | 13 | 159 | 6.01e-13 | 64.7 |
| MS.gene26200.t1 | AT1G14160 | 33.613 | 119 | 77 | 1 | 68 | 184 | 88 | 206 | 2.49e-11 | 60.8 |
| MS.gene26200.t1 | AT2G27370 | 30.769 | 117 | 79 | 1 | 70 | 184 | 101 | 217 | 8.25e-11 | 59.7 |
Find 44 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTGATCTTGGCGCTTTC+AGG | 0.140569 | 5.4:+57901676 | MS.gene26200:CDS |
| TTTCACTCATATCCTCTTAT+AGG | 0.157418 | 5.4:+57903789 | MS.gene26200:CDS |
| GTTCTATACCTTGCTGAATA+TGG | 0.284110 | 5.4:+57903656 | MS.gene26200:CDS |
| TACAAGATCTTCCATTGAAA+TGG | 0.311295 | 5.4:+57901497 | MS.gene26200:CDS |
| TCTGTTGCCTATTCTGATCT+TGG | 0.316388 | 5.4:+57901666 | MS.gene26200:CDS |
| TTCAACTATGCCTAAGGCTT+GGG | 0.359587 | 5.4:+57902535 | MS.gene26200:CDS |
| TGGGAGTTGTTGACTTGTGC+TGG | 0.377358 | 5.4:-57903833 | None:intergenic |
| AGTTCAGCTTGTGGATCTTT+CGG | 0.384816 | 5.4:+57903698 | MS.gene26200:CDS |
| AATAACATGGACAAGGGAAT+TGG | 0.407691 | 5.4:+57901462 | None:intergenic |
| TACTGAATTTCCCATTTCAA+TGG | 0.408880 | 5.4:-57901508 | None:intergenic |
| GCTGTTACACATAAACAAAT+AGG | 0.414973 | 5.4:-57901600 | None:intergenic |
| AATTCTGAGGAAAATGAGTA+TGG | 0.430525 | 5.4:+57901642 | MS.gene26200:CDS |
| ACTAGCATTGCTGCTTTCAA+TGG | 0.434764 | 5.4:+57903863 | MS.gene26200:CDS |
| GTAGTTGATGAAGAATTTGA+AGG | 0.438687 | 5.4:+57901528 | MS.gene26200:CDS |
| CTTCAACTATGCCTAAGGCT+TGG | 0.448431 | 5.4:+57902534 | MS.gene26200:CDS |
| TTTGCTAAATAGCCTATAAG+AGG | 0.458378 | 5.4:-57903801 | None:intergenic |
| AGCTTCATTGCTACGTATTG+TGG | 0.458863 | 5.4:+57901557 | MS.gene26200:CDS |
| ACAAGATCTTCCATTGAAAT+GGG | 0.467090 | 5.4:+57901498 | MS.gene26200:CDS |
| GAAAGCGCCAAGATCAGAAT+AGG | 0.490579 | 5.4:-57901673 | None:intergenic |
| ACCTACATAATCCTAGCTGC+TGG | 0.505252 | 5.4:+57903617 | MS.gene26200:CDS |
| CCGTCCTTCAACTATGCCTA+AGG | 0.510562 | 5.4:+57902529 | MS.gene26200:CDS |
| CTTAGGCATAGTTGAAGGAC+GGG | 0.514097 | 5.4:-57902528 | None:intergenic |
| AGTTATCACATTTATTGCTG+TGG | 0.518652 | 5.4:+57903751 | MS.gene26200:CDS |
| CATGCCAATGGTATTTGTGC+AGG | 0.554512 | 5.4:+57902470 | MS.gene26200:CDS |
| CATTATGCTTAAGAATTCTG+AGG | 0.555673 | 5.4:+57901629 | MS.gene26200:CDS |
| CAGCAATGCTAGTGTCCTTG+TGG | 0.563670 | 5.4:-57903853 | None:intergenic |
| GAATATGGAGTCCCTACTGC+AGG | 0.568100 | 5.4:+57903671 | MS.gene26200:CDS |
| AGCAATGCTAGTGTCCTTGT+GGG | 0.569064 | 5.4:-57903852 | None:intergenic |
| GCTGAACTCCATCCTGCAGT+AGG | 0.577795 | 5.4:-57903683 | None:intergenic |
| TCCAGCAGCTAGGATTATGT+AGG | 0.582929 | 5.4:-57903618 | None:intergenic |
| CTGAACTCCATCCTGCAGTA+GGG | 0.588006 | 5.4:-57903682 | None:intergenic |
| CAAGCCTTAGGCATAGTTGA+AGG | 0.590779 | 5.4:-57902533 | None:intergenic |
| AGGTATTTGGTGCATGCCAA+TGG | 0.592552 | 5.4:+57902458 | MS.gene26200:intron |
| TTAATACAGCTCCAGCAGCT+AGG | 0.598816 | 5.4:-57903628 | None:intergenic |
| ATATCCTGCACAAATACCAT+TGG | 0.600027 | 5.4:-57902474 | None:intergenic |
| CCTTAGGCATAGTTGAAGGA+CGG | 0.602862 | 5.4:-57902529 | None:intergenic |
| GCAGGATGGAGTTCAGCTTG+TGG | 0.603477 | 5.4:+57903689 | MS.gene26200:CDS |
| ATGGAGTCCCTACTGCAGGA+TGG | 0.616514 | 5.4:+57903675 | MS.gene26200:CDS |
| CACAATAATAACATGGACAA+GGG | 0.617085 | 5.4:+57901456 | None:intergenic |
| GCACAATAATAACATGGACA+AGG | 0.662151 | 5.4:+57901455 | None:intergenic |
| TAGGGACTCCATATTCAGCA+AGG | 0.672967 | 5.4:-57903664 | None:intergenic |
| ACAAGTCAACAACTCCCACA+AGG | 0.673400 | 5.4:+57903838 | MS.gene26200:CDS |
| TGCTGGAGCTGTATTAACAG+AGG | 0.687633 | 5.4:+57903634 | MS.gene26200:CDS |
| TTAGGCATAGTTGAAGGACG+GGG | 0.688488 | 5.4:-57902527 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTAAATAAAAATTATAG+GGG | + | chr5.4:57903300-57903319 | MS.gene26200:intron | 10.0% |
| !! | CAAAAGTAAATAAAAATTAT+AGG | + | chr5.4:57903298-57903317 | MS.gene26200:intron | 10.0% |
| !!! | AAATAAATACAAATTTTATC+TGG | - | chr5.4:57902107-57902126 | None:intergenic | 10.0% |
| !!! | AATAAATACAAATTTTATCT+GGG | - | chr5.4:57902106-57902125 | None:intergenic | 10.0% |
| !!! | ATTTTTACATCAAAATTTAA+AGG | - | chr5.4:57903509-57903528 | None:intergenic | 10.0% |
| !! | AAAAAAATCCAAATATTACA+GGG | + | chr5.4:57903458-57903477 | MS.gene26200:intron | 15.0% |
| !! | AAGTAAATAAAAATTATAGG+GGG | + | chr5.4:57903301-57903320 | MS.gene26200:intron | 15.0% |
| !! | AGCAAAAAAACTATAAAATT+TGG | - | chr5.4:57901724-57901743 | None:intergenic | 15.0% |
| !! | CTGTTAAATATTCATATAAA+AGG | + | chr5.4:57903233-57903252 | MS.gene26200:intron | 15.0% |
| !! | TAAAAAAATCCAAATATTAC+AGG | + | chr5.4:57903457-57903476 | MS.gene26200:intron | 15.0% |
| !!! | ATAAATACAAATTTTATCTG+GGG | - | chr5.4:57902105-57902124 | None:intergenic | 15.0% |
| !!! | GAATTATATTTTAAGTCAAT+AGG | + | chr5.4:57902211-57902230 | MS.gene26200:intron | 15.0% |
| !!! | GAATTTGTTTTTTTATTGAT+AGG | + | chr5.4:57901986-57902005 | MS.gene26200:intron | 15.0% |
| !! | AACATTCAAATTGAAAATGA+GGG | + | chr5.4:57903328-57903347 | MS.gene26200:intron | 20.0% |
| !! | AAGGATAGAAAATAATTATC+AGG | + | chr5.4:57903194-57903213 | MS.gene26200:intron | 20.0% |
| !! | GAATAATATCCTTATGTTTA+TGG | - | chr5.4:57901762-57901781 | None:intergenic | 20.0% |
| !! | TAACATTCAAATTGAAAATG+AGG | + | chr5.4:57903327-57903346 | MS.gene26200:intron | 20.0% |
| !! | TATCTAAGAATTAACCATAT+TGG | + | chr5.4:57903148-57903167 | MS.gene26200:intron | 20.0% |
| !! | TTTCAAAGAACTAATTTGAT+TGG | + | chr5.4:57901942-57901961 | MS.gene26200:intron | 20.0% |
| !!! | GTATTTTAATCAGTTTGTAT+AGG | + | chr5.4:57902816-57902835 | MS.gene26200:intron | 20.0% |
| !!! | TAAATACAAATTTTATCTGG+GGG | - | chr5.4:57902104-57902123 | None:intergenic | 20.0% |
| !!! | TAACCTTTGAAATAATTTGA+AGG | + | chr5.4:57901909-57901928 | MS.gene26200:intron | 20.0% |
| !!! | TTTTTTTGCTCTACTTAAAT+TGG | + | chr5.4:57901734-57901753 | MS.gene26200:intron | 20.0% |
| ! | AAATTGGATCCATAAACATA+AGG | + | chr5.4:57901750-57901769 | MS.gene26200:intron | 25.0% |
| ! | ACATCAAAATTTAAAGGTCT+GGG | - | chr5.4:57903503-57903522 | None:intergenic | 25.0% |
| ! | AGAAAACAAAATAACTAGCT+AGG | + | chr5.4:57902333-57902352 | MS.gene26200:intron | 25.0% |
| ! | AGGGTTCTATAAATATTCTA+GGG | + | chr5.4:57903347-57903366 | MS.gene26200:intron | 25.0% |
| ! | ATATTGAATGATTGCATGAA+GGG | - | chr5.4:57903040-57903059 | None:intergenic | 25.0% |
| ! | ATTTGTGTTTGATATCCTAT+AGG | + | chr5.4:57903589-57903608 | MS.gene26200:intron | 25.0% |
| ! | GAACAAGAAAAATACTCAAA+AGG | + | chr5.4:57903175-57903194 | MS.gene26200:intron | 25.0% |
| ! | TACATCAAAATTTAAAGGTC+TGG | - | chr5.4:57903504-57903523 | None:intergenic | 25.0% |
| ! | TCCAAACACTAAAATAAGAT+TGG | - | chr5.4:57902425-57902444 | None:intergenic | 25.0% |
| ! | TCTCCTTCAAATTATTTCAA+AGG | - | chr5.4:57901915-57901934 | None:intergenic | 25.0% |
| ! | TTCTTAGATACCTTAAAGTT+TGG | - | chr5.4:57903138-57903157 | None:intergenic | 25.0% |
| ! | TTTCTTGTTCATTACCAATA+TGG | - | chr5.4:57903165-57903184 | None:intergenic | 25.0% |
| !! | TTTTGCATATTGTAGGTATT+TGG | + | chr5.4:57902445-57902464 | MS.gene26200:intron | 25.0% |
| !!! | AATTTCCATCTTACTTTTTC+TGG | + | chr5.4:57902866-57902885 | MS.gene26200:intron | 25.0% |
| !!! | ACCAATCTTATTTTAGTGTT+TGG | + | chr5.4:57902421-57902440 | MS.gene26200:intron | 25.0% |
| !!! | ATTCAATTGTTTTTGAGCTA+AGG | + | chr5.4:57901778-57901797 | MS.gene26200:intron | 25.0% |
| AATTTGGCAAACTTCATTGA+TGG | - | chr5.4:57901708-57901727 | None:intergenic | 30.0% | |
| ACAACATTACCCATAATGTT+TGG | + | chr5.4:57903003-57903022 | MS.gene26200:intron | 30.0% | |
| ACAAGATCTTCCATTGAAAT+GGG | + | chr5.4:57901498-57901517 | MS.gene26200:CDS | 30.0% | |
| ACTGGAATATATTTCATGTC+TGG | - | chr5.4:57902392-57902411 | None:intergenic | 30.0% | |
| AGTTATCACATTTATTGCTG+TGG | + | chr5.4:57903751-57903770 | MS.gene26200:CDS | 30.0% | |
| ATTCATACTGAATAGGTAGA+AGG | + | chr5.4:57903430-57903449 | MS.gene26200:intron | 30.0% | |
| CAATACCATCACACATTAAA+TGG | - | chr5.4:57902937-57902956 | None:intergenic | 30.0% | |
| CATTATGCTTAAGAATTCTG+AGG | + | chr5.4:57901629-57901648 | MS.gene26200:CDS | 30.0% | |
| GAGCAAGTAAAACAATAGTT+AGG | + | chr5.4:57902308-57902327 | MS.gene26200:intron | 30.0% | |
| GAGGGTTCTATAAATATTCT+AGG | + | chr5.4:57903346-57903365 | MS.gene26200:intron | 30.0% | |
| GATATTGAATGATTGCATGA+AGG | - | chr5.4:57903041-57903060 | None:intergenic | 30.0% | |
| GCTGTTACACATAAACAAAT+AGG | - | chr5.4:57901603-57901622 | None:intergenic | 30.0% | |
| GGGTTCTATAAATATTCTAG+GGG | + | chr5.4:57903348-57903367 | MS.gene26200:intron | 30.0% | |
| GGTTCTATAAATATTCTAGG+GGG | + | chr5.4:57903349-57903368 | MS.gene26200:intron | 30.0% | |
| TACAAGATCTTCCATTGAAA+TGG | + | chr5.4:57901497-57901516 | MS.gene26200:CDS | 30.0% | |
| TACTGAATTTCCCATTTCAA+TGG | - | chr5.4:57901511-57901530 | None:intergenic | 30.0% | |
| TACTTCCATTTAATGTGTGA+TGG | + | chr5.4:57902929-57902948 | MS.gene26200:intron | 30.0% | |
| TAGATACCTTAAAGTTTGGT+TGG | - | chr5.4:57903134-57903153 | None:intergenic | 30.0% | |
| TCATTCCAGAAAAAGTAAGA+TGG | - | chr5.4:57902874-57902893 | None:intergenic | 30.0% | |
| TGAAATCCAACCAAACTTTA+AGG | + | chr5.4:57903125-57903144 | MS.gene26200:intron | 30.0% | |
| TTCATACTGAATAGGTAGAA+GGG | + | chr5.4:57903431-57903450 | MS.gene26200:intron | 30.0% | |
| TTCTAGCATTCATACTGAAT+AGG | + | chr5.4:57903423-57903442 | MS.gene26200:intron | 30.0% | |
| TTCTTAGATACCTTAAAGCT+TGG | + | chr5.4:57902070-57902089 | MS.gene26200:intron | 30.0% | |
| TTGACAAATGAAAACTCACT+TGG | + | chr5.4:57901849-57901868 | MS.gene26200:intron | 30.0% | |
| TTTCACTCATATCCTCTTAT+AGG | + | chr5.4:57903789-57903808 | MS.gene26200:CDS | 30.0% | |
| TTTGCTAAATAGCCTATAAG+AGG | - | chr5.4:57903804-57903823 | None:intergenic | 30.0% | |
| ! | AAGATTGGTTCATGATTAAC+TGG | - | chr5.4:57902410-57902429 | None:intergenic | 30.0% |
| ! | AATTCTGAGGAAAATGAGTA+TGG | + | chr5.4:57901642-57901661 | MS.gene26200:CDS | 30.0% |
| ! | GTTTGGATTTTGCATATTGT+AGG | + | chr5.4:57902438-57902457 | MS.gene26200:intron | 30.0% |
| ! | TTTCAAGTAAGATATTGACC+TGG | - | chr5.4:57902577-57902596 | None:intergenic | 30.0% |
| !! | AATGGAAGTACTTGTCAATA+TGG | - | chr5.4:57902919-57902938 | None:intergenic | 30.0% |
| !! | GTAGTTGATGAAGAATTTGA+AGG | + | chr5.4:57901528-57901547 | MS.gene26200:CDS | 30.0% |
| !!! | TTGTTTTTGAGCTAAGGTTT+TGG | + | chr5.4:57901784-57901803 | MS.gene26200:intron | 30.0% |
| AAACGTGACTTAAGTTACGT+TGG | + | chr5.4:57902761-57902780 | MS.gene26200:intron | 35.0% | |
| AACGTGACTTAAGTTACGTT+GGG | + | chr5.4:57902762-57902781 | MS.gene26200:intron | 35.0% | |
| ACATGCTCAACCAAACATTA+TGG | - | chr5.4:57903016-57903035 | None:intergenic | 35.0% | |
| ATATCCTGCACAAATACCAT+TGG | - | chr5.4:57902477-57902496 | None:intergenic | 35.0% | |
| CATGCTCAACCAAACATTAT+GGG | - | chr5.4:57903015-57903034 | None:intergenic | 35.0% | |
| CTTGCTCTATGTTTCTTTGA+TGG | - | chr5.4:57902295-57902314 | None:intergenic | 35.0% | |
| GGAATATATTTCATGTCTGG+TGG | - | chr5.4:57902389-57902408 | None:intergenic | 35.0% | |
| GTTCTATACCTTGCTGAATA+TGG | + | chr5.4:57903656-57903675 | MS.gene26200:CDS | 35.0% | |
| TTATGTAGGTTTGCACCTAT+AGG | - | chr5.4:57903607-57903626 | None:intergenic | 35.0% | |
| ! | CTCTATGTTTCTTTGATGGT+TGG | - | chr5.4:57902291-57902310 | None:intergenic | 35.0% |
| ! | GTTGGATTTCAGTAACTTGT+TGG | - | chr5.4:57903116-57903135 | None:intergenic | 35.0% |
| ! | TATGAGAGTGAACGTTTTGT+TGG | - | chr5.4:57902612-57902631 | None:intergenic | 35.0% |
| ! | TTAAGTCACGTTTGCTACAT+TGG | - | chr5.4:57902754-57902773 | None:intergenic | 35.0% |
| !! | ATGAGAGTGAACGTTTTGTT+GGG | - | chr5.4:57902611-57902630 | None:intergenic | 35.0% |
| !!! | CTTACTTTTTCTGGAATGAG+AGG | + | chr5.4:57902875-57902894 | MS.gene26200:intron | 35.0% |
| !!! | TAGGAGTGAGTGTTTTTAGT+TGG | + | chr5.4:57902835-57902854 | MS.gene26200:intron | 35.0% |
| AAAAAGAAAGCCCAAGCCTT+AGG | - | chr5.4:57902548-57902567 | None:intergenic | 40.0% | |
| ACCAGCTACCCTGTAATATT+TGG | - | chr5.4:57903469-57903488 | None:intergenic | 40.0% | |
| AGCTTCATTGCTACGTATTG+TGG | + | chr5.4:57901557-57901576 | MS.gene26200:CDS | 40.0% | |
| AGTTCAGCTTGTGGATCTTT+CGG | + | chr5.4:57903698-57903717 | MS.gene26200:CDS | 40.0% | |
| CACACAAGTTAACTCACGTT+CGG | + | chr5.4:57902653-57902672 | MS.gene26200:intron | 40.0% | |
| TACACGAGTTAATTCACGCT+GGG | + | chr5.4:57902693-57902712 | MS.gene26200:intron | 40.0% | |
| TCCAAATATTACAGGGTAGC+TGG | + | chr5.4:57903465-57903484 | MS.gene26200:intron | 40.0% | |
| TCTGTTGCCTATTCTGATCT+TGG | + | chr5.4:57901666-57901685 | MS.gene26200:CDS | 40.0% | |
| TTCAACTATGCCTAAGGCTT+GGG | + | chr5.4:57902535-57902554 | MS.gene26200:CDS | 40.0% | |
| ! | ACTTGGTCATTTGTTAGAGG+AGG | + | chr5.4:57901866-57901885 | MS.gene26200:intron | 40.0% |
| ! | CTCACTTGGTCATTTGTTAG+AGG | + | chr5.4:57901863-57901882 | MS.gene26200:intron | 40.0% |
| ! | CTTGGTCATTTGTTAGAGGA+GGG | + | chr5.4:57901867-57901886 | MS.gene26200:intron | 40.0% |
| !! | AACGTGAGTTAACTTGTGTG+CGG | - | chr5.4:57902653-57902672 | None:intergenic | 40.0% |
| !! | AACTTGTGTGCGGAGTATTT+TGG | - | chr5.4:57902643-57902662 | None:intergenic | 40.0% |
| !! | ACTAGCATTGCTGCTTTCAA+TGG | + | chr5.4:57903863-57903882 | MS.gene26200:CDS | 40.0% |
| !! | GGTACTGATACCAAGCTTTA+AGG | - | chr5.4:57902083-57902102 | None:intergenic | 40.0% |
| ACAAGTCAACAACTCCCACA+AGG | + | chr5.4:57903838-57903857 | MS.gene26200:CDS | 45.0% | |
| ACCTACATAATCCTAGCTGC+TGG | + | chr5.4:57903617-57903636 | MS.gene26200:CDS | 45.0% | |
| AGCAATGCTAGTGTCCTTGT+GGG | - | chr5.4:57903855-57903874 | None:intergenic | 45.0% | |
| ATTCTGATCTTGGCGCTTTC+AGG | + | chr5.4:57901676-57901695 | MS.gene26200:CDS | 45.0% | |
| CAAGCCTTAGGCATAGTTGA+AGG | - | chr5.4:57902536-57902555 | None:intergenic | 45.0% | |
| CAGCGTGAATTAACTCGTGT+AGG | - | chr5.4:57902694-57902713 | None:intergenic | 45.0% | |
| CATGCCAATGGTATTTGTGC+AGG | + | chr5.4:57902470-57902489 | MS.gene26200:CDS | 45.0% | |
| CCTTAGGCATAGTTGAAGGA+CGG | - | chr5.4:57902532-57902551 | None:intergenic | 45.0% | |
| CTACACGAGTTAATTCACGC+TGG | + | chr5.4:57902692-57902711 | MS.gene26200:intron | 45.0% | |
| CTTAGGCATAGTTGAAGGAC+GGG | - | chr5.4:57902531-57902550 | None:intergenic | 45.0% | |
| CTTCAACTATGCCTAAGGCT+TGG | + | chr5.4:57902534-57902553 | MS.gene26200:CDS | 45.0% | |
| TAGGGACTCCATATTCAGCA+AGG | - | chr5.4:57903667-57903686 | None:intergenic | 45.0% | |
| TCCAGCAGCTAGGATTATGT+AGG | - | chr5.4:57903621-57903640 | None:intergenic | 45.0% | |
| TGCTGGAGCTGTATTAACAG+AGG | + | chr5.4:57903634-57903653 | MS.gene26200:CDS | 45.0% | |
| TTAATACAGCTCCAGCAGCT+AGG | - | chr5.4:57903631-57903650 | None:intergenic | 45.0% | |
| TTAGGCATAGTTGAAGGACG+GGG | - | chr5.4:57902530-57902549 | None:intergenic | 45.0% | |
| ! | GGCTTTCTTTTTGCTTGACC+AGG | + | chr5.4:57902556-57902575 | MS.gene26200:CDS | 45.0% |
| !! | AGGTATTTGGTGCATGCCAA+TGG | + | chr5.4:57902458-57902477 | MS.gene26200:intron | 45.0% |
| !! | GAAAGCGCCAAGATCAGAAT+AGG | - | chr5.4:57901676-57901695 | None:intergenic | 45.0% |
| !! | AAAAGTAAATAAAAATTATA+GGG | + | chr5.4:57903299-57903318 | MS.gene26200:intron | 5.0% |
| !!! | TCTAAAATATTAATTTTATT+AGG | + | chr5.4:57902975-57902994 | MS.gene26200:intron | 5.0% |
| CAGCAATGCTAGTGTCCTTG+TGG | - | chr5.4:57903856-57903875 | None:intergenic | 50.0% | |
| CCGTCCTTCAACTATGCCTA+AGG | + | chr5.4:57902529-57902548 | MS.gene26200:CDS | 50.0% | |
| CTGAACTCCATCCTGCAGTA+GGG | - | chr5.4:57903685-57903704 | None:intergenic | 50.0% | |
| CTGCGTGACTTAAGTCACGT+GGG | + | chr5.4:57902793-57902812 | MS.gene26200:intron | 50.0% | |
| GAATATGGAGTCCCTACTGC+AGG | + | chr5.4:57903671-57903690 | MS.gene26200:CDS | 50.0% | |
| TGCGTGACTTAAGTCACGTG+GGG | + | chr5.4:57902794-57902813 | MS.gene26200:intron | 50.0% | |
| ! | GACACAAGAAGTGCAAGACG+AGG | + | chr5.4:57902233-57902252 | MS.gene26200:intron | 50.0% |
| !! | TGGGAGTTGTTGACTTGTGC+TGG | - | chr5.4:57903836-57903855 | None:intergenic | 50.0% |
| ATGGAGTCCCTACTGCAGGA+TGG | + | chr5.4:57903675-57903694 | MS.gene26200:CDS | 55.0% | |
| CCACGTGACTTAAGTCACGC+AGG | - | chr5.4:57902795-57902814 | None:intergenic | 55.0% | |
| CCTGCGTGACTTAAGTCACG+TGG | + | chr5.4:57902792-57902811 | MS.gene26200:intron | 55.0% | |
| GCAGGATGGAGTTCAGCTTG+TGG | + | chr5.4:57903689-57903708 | MS.gene26200:CDS | 55.0% | |
| GCTGAACTCCATCCTGCAGT+AGG | - | chr5.4:57903686-57903705 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 57901468 | 57903889 | 57901468 | ID=MS.gene26200 |
| chr5.4 | mRNA | 57901468 | 57903889 | 57901468 | ID=MS.gene26200.t1;Parent=MS.gene26200 |
| chr5.4 | exon | 57901468 | 57901697 | 57901468 | ID=MS.gene26200.t1.exon1;Parent=MS.gene26200.t1 |
| chr5.4 | CDS | 57901468 | 57901697 | 57901468 | ID=cds.MS.gene26200.t1;Parent=MS.gene26200.t1 |
| chr5.4 | exon | 57902460 | 57902577 | 57902460 | ID=MS.gene26200.t1.exon2;Parent=MS.gene26200.t1 |
| chr5.4 | CDS | 57902460 | 57902577 | 57902460 | ID=cds.MS.gene26200.t1;Parent=MS.gene26200.t1 |
| chr5.4 | exon | 57903611 | 57903889 | 57903611 | ID=MS.gene26200.t1.exon3;Parent=MS.gene26200.t1 |
| chr5.4 | CDS | 57903611 | 57903889 | 57903611 | ID=cds.MS.gene26200.t1;Parent=MS.gene26200.t1 |
| Gene Sequence |
| Protein sequence |
