Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82684.t1 | XP_024634880.1 | 87.6 | 371 | 45 | 1 | 1 | 371 | 349 | 718 | 6.40E-158 | 567 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82684.t1 | A0A396IRE0 | 80.1 | 346 | 68 | 1 | 26 | 371 | 1 | 345 | 2.0e-148 | 535.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene82684 | 0.829754 | 4.31E-55 | -1.69E-46 |
| MS.gene049850 | MS.gene82684 | 0.820259 | 7.54E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene82684 | 0.813705 | 2.24E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene82684 | 0.805686 | 1.18E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene82684 | 0.816405 | 5.62E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene82684 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene82684 | 0.811102 | 8.28E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene82684 | 0.829837 | 4.12E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene82684 | 0.826235 | 3.03E-54 | -1.69E-46 |
| MS.gene051800 | MS.gene82684 | 0.813761 | 2.17E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene82684 | 0.819001 | 1.46E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene82684 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene82684 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene82684 | 0.808066 | 3.72E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene82684 | 0.820014 | 8.58E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene82684 | 0.804263 | 2.35E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene82684 | 0.806943 | 6.44E-50 | -1.69E-46 |
| MS.gene054801 | MS.gene82684 | 0.814508 | 1.49E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene82684 | 0.82151 | 3.89E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene82684 | 0.835874 | 1.30E-56 | -1.69E-46 |
| MS.gene055608 | MS.gene82684 | 0.80752 | 4.85E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene82684 | 0.811333 | 7.38E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene82684 | 0.840972 | 6.30E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene82684 | 0.807123 | 5.89E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene82684 | 0.804928 | 1.71E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene82684 | 0.82535 | 4.92E-54 | -1.69E-46 |
| MS.gene058360 | MS.gene82684 | 0.800287 | 1.55E-48 | -1.69E-46 |
| MS.gene060803 | MS.gene82684 | 0.805789 | 1.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82684.t1 | MTR_3g050500 | 67.213 | 366 | 117 | 2 | 1 | 364 | 368 | 732 | 1.21e-167 | 486 |
| MS.gene82684.t1 | MTR_3g051060 | 69.649 | 313 | 94 | 1 | 59 | 371 | 431 | 742 | 4.01e-157 | 459 |
| MS.gene82684.t1 | MTR_3g058570 | 54.603 | 315 | 132 | 4 | 59 | 368 | 81 | 389 | 1.45e-110 | 328 |
| MS.gene82684.t1 | MTR_5g085340 | 56.190 | 315 | 130 | 3 | 58 | 368 | 439 | 749 | 1.51e-110 | 340 |
| MS.gene82684.t1 | MTR_5g085350 | 55.949 | 311 | 131 | 3 | 60 | 368 | 422 | 728 | 6.94e-107 | 330 |
| MS.gene82684.t1 | MTR_5g085350 | 55.949 | 311 | 131 | 3 | 60 | 368 | 435 | 741 | 1.04e-106 | 330 |
| MS.gene82684.t1 | MTR_5g085360 | 45.045 | 333 | 146 | 5 | 63 | 362 | 406 | 734 | 4.05e-84 | 271 |
| MS.gene82684.t1 | MTR_2g020510 | 45.098 | 306 | 160 | 4 | 63 | 367 | 391 | 689 | 2.57e-77 | 251 |
| MS.gene82684.t1 | MTR_2g020470 | 43.648 | 307 | 143 | 6 | 63 | 367 | 393 | 671 | 3.14e-71 | 235 |
| MS.gene82684.t1 | MTR_2g020450 | 44.262 | 305 | 163 | 3 | 63 | 367 | 394 | 691 | 1.03e-69 | 231 |
| MS.gene82684.t1 | MTR_5g091220 | 36.242 | 298 | 177 | 6 | 65 | 359 | 316 | 603 | 2.78e-46 | 167 |
| MS.gene82684.t1 | MTR_2g438740 | 33.106 | 293 | 189 | 4 | 63 | 354 | 277 | 563 | 1.53e-45 | 164 |
| MS.gene82684.t1 | MTR_3g055310 | 35.192 | 287 | 173 | 6 | 65 | 348 | 60 | 336 | 3.16e-45 | 159 |
| MS.gene82684.t1 | MTR_3g055310 | 35.192 | 287 | 173 | 6 | 65 | 348 | 123 | 399 | 2.03e-44 | 158 |
| MS.gene82684.t1 | MTR_3g055310 | 35.192 | 287 | 173 | 6 | 65 | 348 | 175 | 451 | 7.18e-44 | 158 |
| MS.gene82684.t1 | MTR_3g055310 | 35.192 | 287 | 173 | 6 | 65 | 348 | 203 | 479 | 9.06e-44 | 158 |
| MS.gene82684.t1 | MTR_3g055310 | 35.192 | 287 | 173 | 6 | 65 | 348 | 201 | 477 | 1.09e-43 | 158 |
| MS.gene82684.t1 | MTR_3g055310 | 35.192 | 287 | 173 | 6 | 65 | 348 | 228 | 504 | 1.55e-43 | 158 |
| MS.gene82684.t1 | MTR_2g438400 | 33.663 | 303 | 177 | 7 | 65 | 358 | 258 | 545 | 2.99e-43 | 158 |
| MS.gene82684.t1 | MTR_5g028190 | 31.169 | 308 | 206 | 3 | 51 | 357 | 229 | 531 | 7.23e-42 | 154 |
| MS.gene82684.t1 | MTR_2g438440 | 33.333 | 303 | 192 | 5 | 65 | 364 | 399 | 694 | 1.11e-41 | 155 |
| MS.gene82684.t1 | MTR_2g438700 | 31.596 | 307 | 193 | 6 | 65 | 364 | 402 | 698 | 3.19e-41 | 154 |
| MS.gene82684.t1 | MTR_2g438720 | 31.290 | 310 | 190 | 7 | 65 | 364 | 404 | 700 | 2.93e-40 | 151 |
| MS.gene82684.t1 | MTR_5g028450 | 31.699 | 306 | 189 | 6 | 63 | 359 | 2 | 296 | 5.08e-39 | 141 |
| MS.gene82684.t1 | MTR_2g438640 | 33.225 | 307 | 181 | 10 | 65 | 361 | 404 | 696 | 3.49e-38 | 145 |
| MS.gene82684.t1 | MTR_5g028130 | 28.617 | 311 | 212 | 4 | 51 | 357 | 31 | 335 | 6.77e-38 | 139 |
| MS.gene82684.t1 | MTR_3g455790 | 32.404 | 287 | 181 | 6 | 65 | 348 | 311 | 587 | 3.12e-37 | 142 |
| MS.gene82684.t1 | MTR_2g017930 | 34.130 | 293 | 181 | 4 | 60 | 351 | 357 | 638 | 2.32e-36 | 140 |
| MS.gene82684.t1 | MTR_2g438760 | 30.169 | 295 | 200 | 4 | 65 | 358 | 273 | 562 | 1.66e-35 | 137 |
| MS.gene82684.t1 | MTR_2g438640 | 31.457 | 302 | 167 | 8 | 65 | 361 | 404 | 670 | 1.25e-34 | 135 |
| MS.gene82684.t1 | MTR_3g452020 | 31.707 | 287 | 183 | 6 | 65 | 348 | 136 | 412 | 2.22e-33 | 129 |
| MS.gene82684.t1 | MTR_5g028930 | 29.779 | 272 | 184 | 4 | 53 | 322 | 312 | 578 | 2.27e-33 | 131 |
| MS.gene82684.t1 | MTR_3g452020 | 31.707 | 287 | 183 | 6 | 65 | 348 | 312 | 588 | 1.20e-32 | 129 |
| MS.gene82684.t1 | MTR_2g438640 | 34.171 | 199 | 122 | 5 | 167 | 361 | 400 | 593 | 1.03e-27 | 114 |
| MS.gene82684.t1 | MTR_6g017215 | 35.811 | 148 | 94 | 1 | 167 | 313 | 6 | 153 | 2.16e-26 | 105 |
| MS.gene82684.t1 | MTR_5g028690 | 31.928 | 166 | 112 | 1 | 161 | 325 | 35 | 200 | 3.47e-21 | 91.7 |
| MS.gene82684.t1 | MTR_5g028900 | 34.028 | 144 | 84 | 2 | 182 | 325 | 17 | 149 | 1.70e-20 | 87.4 |
| MS.gene82684.t1 | MTR_5g028110 | 29.949 | 197 | 102 | 5 | 169 | 357 | 4 | 172 | 1.77e-18 | 82.4 |
| MS.gene82684.t1 | MTR_5g028840 | 29.444 | 180 | 126 | 1 | 169 | 347 | 4 | 183 | 1.63e-17 | 80.5 |
| MS.gene82684.t1 | MTR_2g438470 | 36.207 | 116 | 72 | 1 | 127 | 242 | 384 | 497 | 4.12e-16 | 80.1 |
| MS.gene82684.t1 | MTR_2g438580 | 41.026 | 78 | 46 | 0 | 182 | 259 | 3 | 80 | 1.64e-15 | 71.6 |
| MS.gene82684.t1 | MTR_1g113760 | 24.324 | 296 | 211 | 8 | 65 | 354 | 243 | 531 | 3.39e-13 | 71.2 |
| MS.gene82684.t1 | MTR_1g113730 | 25.000 | 316 | 204 | 11 | 37 | 336 | 17 | 315 | 1.15e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82684.t1 | AT3G18670 | 32.581 | 310 | 202 | 5 | 50 | 358 | 281 | 584 | 7.28e-49 | 174 |
| MS.gene82684.t1 | AT3G18670 | 32.581 | 310 | 202 | 5 | 50 | 358 | 336 | 639 | 1.36e-48 | 174 |
| MS.gene82684.t1 | AT5G35810 | 32.692 | 312 | 197 | 6 | 52 | 355 | 23 | 329 | 2.77e-46 | 161 |
| MS.gene82684.t1 | AT5G04690 | 32.237 | 304 | 194 | 7 | 59 | 360 | 321 | 614 | 7.77e-44 | 160 |
| MS.gene82684.t1 | AT5G04690 | 32.237 | 304 | 194 | 7 | 59 | 360 | 341 | 634 | 1.64e-43 | 160 |
| MS.gene82684.t1 | AT5G04690 | 32.237 | 304 | 194 | 7 | 59 | 360 | 355 | 648 | 1.75e-43 | 160 |
| MS.gene82684.t1 | AT5G04700 | 33.537 | 328 | 207 | 8 | 38 | 360 | 337 | 658 | 1.21e-42 | 157 |
| MS.gene82684.t1 | AT3G54065 | 35.681 | 213 | 128 | 3 | 153 | 358 | 8 | 218 | 2.86e-39 | 140 |
| MS.gene82684.t1 | AT5G04730 | 29.448 | 326 | 214 | 7 | 42 | 360 | 275 | 591 | 2.24e-36 | 139 |
| MS.gene82684.t1 | AT5G04680 | 31.861 | 317 | 195 | 8 | 57 | 360 | 222 | 530 | 2.69e-36 | 139 |
| MS.gene82684.t1 | AT5G04680 | 31.861 | 317 | 195 | 8 | 57 | 360 | 331 | 639 | 7.97e-36 | 138 |
| MS.gene82684.t1 | AT5G04680 | 31.861 | 317 | 195 | 8 | 57 | 360 | 345 | 653 | 9.26e-36 | 138 |
| MS.gene82684.t1 | AT5G04680 | 31.861 | 317 | 195 | 8 | 57 | 360 | 374 | 682 | 1.58e-35 | 137 |
Find 73 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCCAGGTGAAATCTTTA+AGG | 0.271604 | 3.1:-37581160 | MS.gene82684:CDS |
| ATGTTCATTTCTTTCATTGC+TGG | 0.288747 | 3.1:-37580802 | MS.gene82684:CDS |
| TGCTTGCCTCTCACATTCTA+TGG | 0.296383 | 3.1:-37580712 | MS.gene82684:CDS |
| AAGTGGCGTAGTTGAAATTA+TGG | 0.302865 | 3.1:-37582452 | MS.gene82684:CDS |
| CTTCTTTGTTGCTTCTATGA+TGG | 0.336687 | 3.1:+37581187 | None:intergenic |
| CCTGTTTCCTGATTGCCTCC+AGG | 0.337339 | 3.1:+37581021 | None:intergenic |
| GATCAAGATATAACGGAAAC+TGG | 0.338760 | 3.1:+37580683 | None:intergenic |
| CATTGTTAGAGTTAGTTTCA+TGG | 0.358694 | 3.1:+37582254 | None:intergenic |
| TTTGCTGTATCTTCATTAGT+TGG | 0.362700 | 3.1:-37580961 | MS.gene82684:CDS |
| CCTGGAGGCAATCAGGAAAC+AGG | 0.362749 | 3.1:-37581021 | MS.gene82684:CDS |
| AACACTGCTTGGAGGATATC+TGG | 0.368356 | 3.1:-37582070 | MS.gene82684:CDS |
| TCCTTTCTATACTCACTTCT+CGG | 0.368888 | 3.1:-37580906 | MS.gene82684:CDS |
| TTGTTGAGGGGTTGTGGAAG+GGG | 0.371458 | 3.1:-37582189 | MS.gene82684:CDS |
| CGCAAGTTGTTGAGGGGTTG+TGG | 0.380881 | 3.1:-37582195 | MS.gene82684:CDS |
| TGTTGCTTCTATGATGGTAA+TGG | 0.392154 | 3.1:+37581193 | None:intergenic |
| CTGTTTCCTGATTGCCTCCA+GGG | 0.400780 | 3.1:+37581022 | None:intergenic |
| TCCTCCTTAAAGATTTCACC+TGG | 0.410908 | 3.1:+37581156 | None:intergenic |
| CAACGTCCCTGGAGGCAATC+AGG | 0.419195 | 3.1:-37581028 | MS.gene82684:CDS |
| GGCGTCTCCTTTGCTACATC+AGG | 0.434602 | 3.1:-37581051 | MS.gene82684:CDS |
| GTTGTTGAGGGGTTGTGGAA+GGG | 0.442730 | 3.1:-37582190 | MS.gene82684:CDS |
| AGATGCTGCCAAGTGTAAAA+TGG | 0.450627 | 3.1:+37582111 | None:intergenic |
| CTTCTATGATGGTAATGGTC+TGG | 0.452731 | 3.1:+37581198 | None:intergenic |
| AGCATAACACCCTTGATACT+TGG | 0.455975 | 3.1:+37580628 | None:intergenic |
| CATAAATCAACAAGTTGATA+AGG | 0.463848 | 3.1:-37582143 | MS.gene82684:CDS |
| AGTTGTTGAGGGGTTGTGGA+AGG | 0.466656 | 3.1:-37582191 | MS.gene82684:CDS |
| ACAGGGAAACCAACATTTGA+AGG | 0.475667 | 3.1:-37581003 | MS.gene82684:CDS |
| GAAGGGCAACCAGCATTTGA+AGG | 0.483339 | 3.1:-37580985 | MS.gene82684:CDS |
| ATAGAACAAGATACCACTCT+TGG | 0.493665 | 3.1:+37580750 | None:intergenic |
| CTCCTTAAAGATTTCACCTG+GGG | 0.497170 | 3.1:+37581158 | None:intergenic |
| GCTACATCAGGCAACGTCCC+TGG | 0.497506 | 3.1:-37581039 | MS.gene82684:CDS |
| AGAGCTTAATTCAAAAGTAA+AGG | 0.498132 | 3.1:-37582428 | MS.gene82684:CDS |
| GTTGTAGCAGCACTCGTCGC+AGG | 0.504264 | 3.1:-37581072 | MS.gene82684:CDS |
| GAATGTGAGAGGCAAGCATA+TGG | 0.510653 | 3.1:+37580717 | None:intergenic |
| GGTGCCACCACCAAGTATCA+AGG | 0.511463 | 3.1:-37580638 | MS.gene82684:CDS |
| TTGAGAAGATCAAGATATAA+CGG | 0.512499 | 3.1:+37580676 | None:intergenic |
| TTGATCTTCTCAAAGTTACA+TGG | 0.512948 | 3.1:-37580666 | MS.gene82684:CDS |
| AGAAATGAACATGGCAACAA+TGG | 0.515982 | 3.1:+37580813 | None:intergenic |
| ATTGCATCAGAATTATCAAA+TGG | 0.517462 | 3.1:-37582364 | MS.gene82684:CDS |
| ACAGCAAATCCTTCAAATGC+TGG | 0.519658 | 3.1:+37580976 | None:intergenic |
| AACACAACGAAAACACTGCT+TGG | 0.527042 | 3.1:-37582081 | MS.gene82684:CDS |
| GCTGGTTGCCCTTCAAATGT+TGG | 0.529783 | 3.1:+37580994 | None:intergenic |
| CACAACCCCTCAACAACTTG+CGG | 0.534637 | 3.1:+37582196 | None:intergenic |
| AGACAACCGCAAGTTGTTGA+GGG | 0.537910 | 3.1:-37582202 | MS.gene82684:CDS |
| CATCATAGAAGCAACAAAGA+AGG | 0.547820 | 3.1:-37581186 | MS.gene82684:CDS |
| TAGACAACCGCAAGTTGTTG+AGG | 0.551855 | 3.1:-37582203 | MS.gene82684:CDS |
| TCCGAGAAGTGAGTATAGAA+AGG | 0.552792 | 3.1:+37580905 | None:intergenic |
| GTAAAGGCATGTGACAAGAA+AGG | 0.554291 | 3.1:-37582412 | MS.gene82684:CDS |
| ATAACACCCTTGATACTTGG+TGG | 0.563945 | 3.1:+37580631 | None:intergenic |
| ACAACGAAAACACTGCTTGG+AGG | 0.565861 | 3.1:-37582078 | MS.gene82684:CDS |
| TATTTGCTTGCAGCAAAACA+TGG | 0.566438 | 3.1:-37582325 | MS.gene82684:CDS |
| CCTCCTTAAAGATTTCACCT+GGG | 0.568420 | 3.1:+37581157 | None:intergenic |
| TTGTTGATTTATGCTGTGAA+AGG | 0.582708 | 3.1:+37582153 | None:intergenic |
| GACGTTGCCTGATGTAGCAA+AGG | 0.589787 | 3.1:+37581044 | None:intergenic |
| GTGGGACATCAAGTGGTACA+AGG | 0.594742 | 3.1:-37582029 | MS.gene82684:intron |
| TCAAGGGTGTTATGCTGTAG+AGG | 0.595960 | 3.1:-37580621 | None:intergenic |
| GATGTCCCACATCATTTGCA+TGG | 0.598842 | 3.1:+37582042 | None:intergenic |
| ACAGATAAATATTCCAAGAG+TGG | 0.603652 | 3.1:-37580763 | MS.gene82684:CDS |
| CTGGAGGCAATCAGGAAACA+GGG | 0.606342 | 3.1:-37581020 | MS.gene82684:CDS |
| CAGGGAAACCAACATTTGAA+GGG | 0.612015 | 3.1:-37581002 | MS.gene82684:CDS |
| AGAATTATCAAATGGCACAA+AGG | 0.614974 | 3.1:-37582356 | MS.gene82684:CDS |
| TCTCAAAGTTACATGGAGGA+AGG | 0.625653 | 3.1:-37580659 | MS.gene82684:CDS |
| GTGCCACCACCAAGTATCAA+GGG | 0.630567 | 3.1:-37580637 | MS.gene82684:CDS |
| ACACCCTTGATACTTGGTGG+TGG | 0.631369 | 3.1:+37580634 | None:intergenic |
| GTGCAGCCATGCAAATGATG+TGG | 0.634297 | 3.1:-37582048 | MS.gene82684:CDS |
| GACAACCGCAAGTTGTTGAG+GGG | 0.642150 | 3.1:-37582201 | MS.gene82684:CDS |
| CCCAGGTGAAATCTTTAAGG+AGG | 0.655968 | 3.1:-37581157 | MS.gene82684:CDS |
| TTCTAGAAAAGAGTATTGAG+TGG | 0.658308 | 3.1:-37581122 | MS.gene82684:CDS |
| ACAACTCCATAGAATGTGAG+AGG | 0.673388 | 3.1:+37580706 | None:intergenic |
| TGCAGCCATGCAAATGATGT+GGG | 0.674334 | 3.1:-37582047 | MS.gene82684:CDS |
| ATCTTCTCAAAGTTACATGG+AGG | 0.681695 | 3.1:-37580663 | MS.gene82684:CDS |
| AAATGATGTGGGACATCAAG+TGG | 0.684085 | 3.1:-37582036 | MS.gene82684:CDS |
| AGCAATGAAAGAAATGAACA+TGG | 0.705741 | 3.1:+37580804 | None:intergenic |
| ACATCAGGCAACGTCCCTGG+AGG | 0.708851 | 3.1:-37581036 | MS.gene82684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTGTTTTGTTTA+AGG | - | chr3.1:37581364-37581383 | MS.gene82684:intron | 10.0% |
| !! | AAAAAAAATGTTTACAATAC+TGG | + | chr3.1:37581167-37581186 | None:intergenic | 15.0% |
| !!! | TAATAACTTTTTTTTTGACA+AGG | - | chr3.1:37581243-37581262 | MS.gene82684:intron | 15.0% |
| !! | GAATTAAGTTAAACAATCTA+TGG | - | chr3.1:37581282-37581301 | MS.gene82684:intron | 20.0% |
| !! | GTATTTCCTATTAATTAATG+TGG | - | chr3.1:37581396-37581415 | MS.gene82684:intron | 20.0% |
| !!! | AGTCTTTTAATATACTATAC+AGG | + | chr3.1:37581910-37581929 | None:intergenic | 20.0% |
| !!! | ATGTTTTTTTTTTCATGAAG+AGG | + | chr3.1:37581592-37581611 | None:intergenic | 20.0% |
| !!! | CTGTTTTAATTATATGTGAA+TGG | - | chr3.1:37581883-37581902 | MS.gene82684:intron | 20.0% |
| !!! | GACTAGTATTTTAGTTAATT+TGG | - | chr3.1:37581140-37581159 | MS.gene82684:CDS | 20.0% |
| !!! | GGTTGAATTTTATTTATTGA+TGG | + | chr3.1:37581484-37581503 | None:intergenic | 20.0% |
| !!! | TGAAAAAGATATGACATTTT+TGG | - | chr3.1:37580647-37580666 | MS.gene82684:CDS | 20.0% |
| ! | AGAGCTTAATTCAAAAGTAA+AGG | - | chr3.1:37580704-37580723 | MS.gene82684:CDS | 25.0% |
| ! | ATTGCATCAGAATTATCAAA+TGG | - | chr3.1:37580768-37580787 | MS.gene82684:CDS | 25.0% |
| ! | TTGAGAAGATCAAGATATAA+CGG | + | chr3.1:37582459-37582478 | None:intergenic | 25.0% |
| !! | ATAGAATGACTACGTATTTT+AGG | + | chr3.1:37581506-37581525 | None:intergenic | 25.0% |
| !! | TAGAATGACTACGTATTTTA+GGG | + | chr3.1:37581505-37581524 | None:intergenic | 25.0% |
| !!! | CATAAATCAACAAGTTGATA+AGG | - | chr3.1:37580989-37581008 | MS.gene82684:CDS | 25.0% |
| !!! | TTTTGTTTTGTTTAAGGAAC+TGG | - | chr3.1:37581370-37581389 | MS.gene82684:intron | 25.0% |
| AAAGATAGATCGTTTGAAAG+AGG | + | chr3.1:37581427-37581446 | None:intergenic | 30.0% | |
| AAGATAGATCGTTTGAAAGA+GGG | + | chr3.1:37581426-37581445 | None:intergenic | 30.0% | |
| ACAGATAAATATTCCAAGAG+TGG | - | chr3.1:37582369-37582388 | MS.gene82684:CDS | 30.0% | |
| AGAATTATCAAATGGCACAA+AGG | - | chr3.1:37580776-37580795 | MS.gene82684:CDS | 30.0% | |
| AGCAATGAAAGAAATGAACA+TGG | + | chr3.1:37582331-37582350 | None:intergenic | 30.0% | |
| ATGTTCATTTCTTTCATTGC+TGG | - | chr3.1:37582330-37582349 | MS.gene82684:CDS | 30.0% | |
| TACTCTCCAATTATTATCGA+CGG | + | chr3.1:37581339-37581358 | None:intergenic | 30.0% | |
| TGTTTCTCTTTAAACTAGCA+AGG | - | chr3.1:37581848-37581867 | MS.gene82684:intron | 30.0% | |
| TTGATCTTCTCAAAGTTACA+TGG | - | chr3.1:37582466-37582485 | MS.gene82684:CDS | 30.0% | |
| ! | ATTTTGCCGTCGATAATAAT+TGG | - | chr3.1:37581330-37581349 | MS.gene82684:intron | 30.0% |
| ! | CATTGTTAGAGTTAGTTTCA+TGG | + | chr3.1:37580881-37580900 | None:intergenic | 30.0% |
| ! | GTGTTACTCTGAATTAAACA+TGG | + | chr3.1:37581545-37581564 | None:intergenic | 30.0% |
| ! | TGAAAACACCATTTTACACT+TGG | - | chr3.1:37581013-37581032 | MS.gene82684:CDS | 30.0% |
| ! | TTTGCTGTATCTTCATTAGT+TGG | - | chr3.1:37582171-37582190 | MS.gene82684:CDS | 30.0% |
| !! | TTCTAGAAAAGAGTATTGAG+TGG | - | chr3.1:37582010-37582029 | MS.gene82684:intron | 30.0% |
| !! | TTGTTGATTTATGCTGTGAA+AGG | + | chr3.1:37580982-37581001 | None:intergenic | 30.0% |
| !!! | TTTTTGGCTGTAGTAAAAAG+TGG | - | chr3.1:37580663-37580682 | MS.gene82684:CDS | 30.0% |
| AAGCCAAAAAGAAGCTTCAT+TGG | + | chr3.1:37582282-37582301 | None:intergenic | 35.0% | |
| AAGTGGCGTAGTTGAAATTA+TGG | - | chr3.1:37580680-37580699 | MS.gene82684:CDS | 35.0% | |
| AGAAATGAACATGGCAACAA+TGG | + | chr3.1:37582322-37582341 | None:intergenic | 35.0% | |
| AGATAGATCGTTTGAAAGAG+GGG | + | chr3.1:37581425-37581444 | None:intergenic | 35.0% | |
| ATAGAACAAGATACCACTCT+TGG | + | chr3.1:37582385-37582404 | None:intergenic | 35.0% | |
| ATCTTCTCAAAGTTACATGG+AGG | - | chr3.1:37582469-37582488 | MS.gene82684:CDS | 35.0% | |
| CATCATAGAAGCAACAAAGA+AGG | - | chr3.1:37581946-37581965 | MS.gene82684:intron | 35.0% | |
| GGGTTGCCACATTAATTAAT+AGG | + | chr3.1:37581405-37581424 | None:intergenic | 35.0% | |
| TATTTGCTTGCAGCAAAACA+TGG | - | chr3.1:37580807-37580826 | MS.gene82684:CDS | 35.0% | |
| TCCTTTCTATACTCACTTCT+CGG | - | chr3.1:37582226-37582245 | MS.gene82684:CDS | 35.0% | |
| ! | CTTCTTTGTTGCTTCTATGA+TGG | + | chr3.1:37581948-37581967 | None:intergenic | 35.0% |
| ! | GATCAAGATATAACGGAAAC+TGG | + | chr3.1:37582452-37582471 | None:intergenic | 35.0% |
| ! | TGTTGCTTCTATGATGGTAA+TGG | + | chr3.1:37581942-37581961 | None:intergenic | 35.0% |
| ! | TTGCCAATGAAGCTTCTTTT+TGG | - | chr3.1:37582276-37582295 | MS.gene82684:CDS | 35.0% |
| AAATGATGTGGGACATCAAG+TGG | - | chr3.1:37581096-37581115 | MS.gene82684:CDS | 40.0% | |
| AACAAAGAAGGAAAAACCCC+AGG | - | chr3.1:37581958-37581977 | MS.gene82684:intron | 40.0% | |
| AACACAACGAAAACACTGCT+TGG | - | chr3.1:37581051-37581070 | MS.gene82684:CDS | 40.0% | |
| AACCCCAGGTGAAATCTTTA+AGG | - | chr3.1:37581972-37581991 | MS.gene82684:intron | 40.0% | |
| ACAACTCCATAGAATGTGAG+AGG | + | chr3.1:37582429-37582448 | None:intergenic | 40.0% | |
| ACAGCAAATCCTTCAAATGC+TGG | + | chr3.1:37582159-37582178 | None:intergenic | 40.0% | |
| ACAGGGAAACCAACATTTGA+AGG | - | chr3.1:37582129-37582148 | MS.gene82684:CDS | 40.0% | |
| AGATGCTGCCAAGTGTAAAA+TGG | + | chr3.1:37581024-37581043 | None:intergenic | 40.0% | |
| AGCATAACACCCTTGATACT+TGG | + | chr3.1:37582507-37582526 | None:intergenic | 40.0% | |
| ATAACACCCTTGATACTTGG+TGG | + | chr3.1:37582504-37582523 | None:intergenic | 40.0% | |
| CAGGGAAACCAACATTTGAA+GGG | - | chr3.1:37582130-37582149 | MS.gene82684:CDS | 40.0% | |
| CCTCCTTAAAGATTTCACCT+GGG | + | chr3.1:37581978-37581997 | None:intergenic | 40.0% | |
| CTCCTTAAAGATTTCACCTG+GGG | + | chr3.1:37581977-37581996 | None:intergenic | 40.0% | |
| GTACAAGGTACGCATATGAT+TGG | - | chr3.1:37581118-37581137 | MS.gene82684:CDS | 40.0% | |
| TCCGAGAAGTGAGTATAGAA+AGG | + | chr3.1:37582230-37582249 | None:intergenic | 40.0% | |
| TCCTCCTTAAAGATTTCACC+TGG | + | chr3.1:37581979-37581998 | None:intergenic | 40.0% | |
| TCTCAAAGTTACATGGAGGA+AGG | - | chr3.1:37582473-37582492 | MS.gene82684:CDS | 40.0% | |
| ! | GTAAAGGCATGTGACAAGAA+AGG | - | chr3.1:37580720-37580739 | MS.gene82684:CDS | 40.0% |
| !! | CTTCTATGATGGTAATGGTC+TGG | + | chr3.1:37581937-37581956 | None:intergenic | 40.0% |
| AACACTGCTTGGAGGATATC+TGG | - | chr3.1:37581062-37581081 | MS.gene82684:CDS | 45.0% | |
| ACAACGAAAACACTGCTTGG+AGG | - | chr3.1:37581054-37581073 | MS.gene82684:CDS | 45.0% | |
| AGACAACCGCAAGTTGTTGA+GGG | - | chr3.1:37580930-37580949 | MS.gene82684:CDS | 45.0% | |
| GAATGTGAGAGGCAAGCATA+TGG | + | chr3.1:37582418-37582437 | None:intergenic | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | + | chr3.1:37581093-37581112 | None:intergenic | 45.0% | |
| TAGACAACCGCAAGTTGTTG+AGG | - | chr3.1:37580929-37580948 | MS.gene82684:CDS | 45.0% | |
| TGCAGCCATGCAAATGATGT+GGG | - | chr3.1:37581085-37581104 | MS.gene82684:CDS | 45.0% | |
| TGCTTGCCTCTCACATTCTA+TGG | - | chr3.1:37582420-37582439 | MS.gene82684:CDS | 45.0% | |
| ! | CCCAGGTGAAATCTTTAAGG+AGG | - | chr3.1:37581975-37581994 | MS.gene82684:intron | 45.0% |
| AGTTGTTGAGGGGTTGTGGA+AGG | - | chr3.1:37580941-37580960 | MS.gene82684:CDS | 50.0% | |
| CACAACCCCTCAACAACTTG+CGG | + | chr3.1:37580939-37580958 | None:intergenic | 50.0% | |
| CTGGAGGCAATCAGGAAACA+GGG | - | chr3.1:37582112-37582131 | MS.gene82684:CDS | 50.0% | |
| CTGTTTCCTGATTGCCTCCA+GGG | + | chr3.1:37582113-37582132 | None:intergenic | 50.0% | |
| GAAGGGCAACCAGCATTTGA+AGG | - | chr3.1:37582147-37582166 | MS.gene82684:CDS | 50.0% | |
| GACAACCGCAAGTTGTTGAG+GGG | - | chr3.1:37580931-37580950 | MS.gene82684:CDS | 50.0% | |
| GACGTTGCCTGATGTAGCAA+AGG | + | chr3.1:37582091-37582110 | None:intergenic | 50.0% | |
| GCTGGTTGCCCTTCAAATGT+TGG | + | chr3.1:37582141-37582160 | None:intergenic | 50.0% | |
| GTGCAGCCATGCAAATGATG+TGG | - | chr3.1:37581084-37581103 | MS.gene82684:CDS | 50.0% | |
| GTGCCACCACCAAGTATCAA+GGG | - | chr3.1:37582495-37582514 | MS.gene82684:CDS | 50.0% | |
| GTGGGACATCAAGTGGTACA+AGG | - | chr3.1:37581103-37581122 | MS.gene82684:CDS | 50.0% | |
| GTTGTTGAGGGGTTGTGGAA+GGG | - | chr3.1:37580942-37580961 | MS.gene82684:CDS | 50.0% | |
| TTGTTGAGGGGTTGTGGAAG+GGG | - | chr3.1:37580943-37580962 | MS.gene82684:CDS | 50.0% | |
| ! | ACACCCTTGATACTTGGTGG+TGG | + | chr3.1:37582501-37582520 | None:intergenic | 50.0% |
| CCTGGAGGCAATCAGGAAAC+AGG | - | chr3.1:37582111-37582130 | MS.gene82684:CDS | 55.0% | |
| CCTGTTTCCTGATTGCCTCC+AGG | + | chr3.1:37582114-37582133 | None:intergenic | 55.0% | |
| CGCAAGTTGTTGAGGGGTTG+TGG | - | chr3.1:37580937-37580956 | MS.gene82684:CDS | 55.0% | |
| GGCGTCTCCTTTGCTACATC+AGG | - | chr3.1:37582081-37582100 | MS.gene82684:CDS | 55.0% | |
| ! | GGTGCCACCACCAAGTATCA+AGG | - | chr3.1:37582494-37582513 | MS.gene82684:CDS | 55.0% |
| ACATCAGGCAACGTCCCTGG+AGG | - | chr3.1:37582096-37582115 | MS.gene82684:CDS | 60.0% | |
| CAACGTCCCTGGAGGCAATC+AGG | - | chr3.1:37582104-37582123 | MS.gene82684:CDS | 60.0% | |
| GCTACATCAGGCAACGTCCC+TGG | - | chr3.1:37582093-37582112 | MS.gene82684:CDS | 60.0% | |
| GTTGTAGCAGCACTCGTCGC+AGG | - | chr3.1:37582060-37582079 | MS.gene82684:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 37580624 | 37582530 | 37580624 | ID=MS.gene82684 |
| chr3.1 | mRNA | 37580624 | 37582530 | 37580624 | ID=MS.gene82684.t1;Parent=MS.gene82684 |
| chr3.1 | exon | 37582030 | 37582530 | 37582030 | ID=MS.gene82684.t1.exon1;Parent=MS.gene82684.t1 |
| chr3.1 | CDS | 37582030 | 37582530 | 37582030 | ID=cds.MS.gene82684.t1;Parent=MS.gene82684.t1 |
| chr3.1 | exon | 37580624 | 37581238 | 37580624 | ID=MS.gene82684.t1.exon2;Parent=MS.gene82684.t1 |
| chr3.1 | CDS | 37580624 | 37581238 | 37580624 | ID=cds.MS.gene82684.t1;Parent=MS.gene82684.t1 |
| Gene Sequence |
| Protein sequence |
