AlfalfaGEDB | MS.gene84195

M. sativa cultivar XinJiangDaYe / MS.gene84195

KEGG: K23978
GO: -
PFAM: PF13472.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84195.t1	XP_013449133.1	87.5	257	31	1	1	256	1	257	1.30E-133	485.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84195.t1	Q9SRM5	52.0	254	118	2	2	254	6	256	1.9e-77	290.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84195.t1	A0A072UBD9	87.5	257	31	1	1	256	1	257	9.4e-134	485.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04932	MS.gene84195	0.844755	6.21E-59	-1.69E-46
MS.gene049549	MS.gene84195	0.818415	1.98E-52	-1.69E-46
MS.gene050809	MS.gene84195	0.811401	7.13E-51	-1.69E-46
MS.gene05104	MS.gene84195	0.809039	2.30E-50	-1.69E-46
MS.gene051138	MS.gene84195	0.803172	3.96E-49	-1.69E-46
MS.gene051907	MS.gene84195	0.821666	3.58E-53	-1.69E-46
MS.gene052211	MS.gene84195	0.813096	3.04E-51	-1.69E-46
MS.gene05240	MS.gene84195	0.827496	1.52E-54	-1.69E-46
MS.gene05244	MS.gene84195	0.804934	1.70E-49	-1.69E-46
MS.gene052606	MS.gene84195	0.822809	1.94E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84195.t1	MTR_7g068450	87.549	257	31	1	1	256	1	257	2.25e-170	470
MS.gene84195.t1	MTR_7g068460	69.565	253	73	2	1	253	32	280	5.95e-128	364
MS.gene84195.t1	MTR_7g068470	68.379	253	75	3	1	253	1	248	5.38e-125	355
MS.gene84195.t1	MTR_7g068470	67.984	253	72	4	1	253	1	244	3.27e-123	350
MS.gene84195.t1	MTR_7g068500	66.667	252	80	2	2	253	32	279	1.25e-122	350
MS.gene84195.t1	MTR_7g068530	61.789	246	89	3	2	247	6	246	4.17e-112	323
MS.gene84195.t1	MTR_4g016510	58.431	255	102	2	1	254	5	256	4.18e-108	313
MS.gene84195.t1	MTR_7g068550	59.200	250	97	3	1	249	5	250	3.26e-105	305
MS.gene84195.t1	MTR_3g070460	52.756	254	116	2	2	254	6	256	3.06e-99	290
MS.gene84195.t1	MTR_7g068520	39.921	253	51	3	1	253	2	153	1.92e-54	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84195.t1	AT3G11210	51.969	254	118	2	2	254	6	256	6.26e-97	284
MS.gene84195.t1	AT2G38180	55.833	240	94	4	1	238	5	234	1.72e-90	270
MS.gene84195.t1	AT5G45920	39.437	213	120	2	1	207	2	211	5.58e-48	159
MS.gene84195.t1	AT5G45920	39.437	213	120	2	1	207	2	211	5.58e-48	159
MS.gene84195.t1	AT5G62930	33.750	240	146	5	1	234	1	233	2.33e-43	147
MS.gene84195.t1	AT5G62930	33.610	241	145	4	1	234	27	259	5.31e-43	147
MS.gene84195.t1	AT5G45920	39.153	189	106	2	1	183	2	187	4.78e-41	140
MS.gene84195.t1	AT5G45920	39.153	189	106	2	1	183	2	187	4.78e-41	140
MS.gene84195.t1	AT5G62930	29.885	174	110	3	68	234	7	175	9.48e-23	92.4

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Find 64 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAAGGCCATTGATTTG+TGG	0.494052	7.1:+33456816	MS.gene84195:CDS
AAGACAATGCCAGTTGAATT+TGG	0.242127	7.1:+33457080	MS.gene84195:CDS
AAGGCGTGGTCTACAAGTTG+TGG	0.554579	7.1:+33455214	MS.gene84195:CDS
AAGTACACAATCGCTAATGC+TGG	0.582708	7.1:-33455641	None:intergenic
AATCATTATGGTGAAGGTTG+GGG	0.521403	7.1:+33453644	MS.gene84195:CDS
AATGAATCCAGTGATGAATT+TGG	0.267380	7.1:+33456722	MS.gene84195:intron
AATTAAAGACCACAAATCAA+TGG	0.527394	7.1:-33456825	None:intergenic
ACAATCATTATGGTGAAGGT+TGG	0.489722	7.1:+33453642	MS.gene84195:CDS
ACATGACGAGGATTGGGAGT+GGG	0.614997	7.1:+33457175	MS.gene84195:CDS
ACATGAGGACCAAGACCACT+TGG	0.540240	7.1:-33455692	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAGGCAAGAGGAT+AGG	+	chr7.1:33456517-33456536	MS.gene84195:intron	30.0%
AACCTAATAAAGCAAATGAG+CGG	+	chr7.1:33456599-33456618	MS.gene84195:intron	30.0%
AACCTACATCAAATCAATGT+TGG	-	chr7.1:33455159-33455178	None:intergenic	30.0%
AATGAATCCAGTGATGAATT+TGG	+	chr7.1:33456722-33456741	MS.gene84195:intron	30.0%
AATTTGTATAAGATCTGGGT+TGG	-	chr7.1:33454872-33454891	None:intergenic	30.0%
ACATGTTAAGGAATCCAAAA+TGG	+	chr7.1:33454264-33454283	MS.gene84195:intron	30.0%
ACCTACATCAAATCAATGTT+GGG	-	chr7.1:33455158-33455177	None:intergenic	30.0%
AGGGTAAAATATTATTGCTG+AGG	-	chr7.1:33455340-33455359	None:intergenic	30.0%
AGTAGACACTAAAGAATACA+AGG	-	chr7.1:33454135-33454154	None:intergenic	30.0%
ATATTATTGCTGAGGAAAGA+AGG	-	chr7.1:33455332-33455351	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	33453599	33457202	33453599	ID=MS.gene84195
chr7.1	mRNA	33453599	33457202	33453599	ID=MS.gene84195.t1;Parent=MS.gene84195
chr7.1	exon	33453599	33453697	33453599	ID=MS.gene84195.t1.exon1;Parent=MS.gene84195.t1
chr7.1	CDS	33453599	33453697	33453599	ID=cds.MS.gene84195.t1;Parent=MS.gene84195.t1
chr7.1	exon	33455176	33455253	33455176	ID=MS.gene84195.t1.exon2;Parent=MS.gene84195.t1
chr7.1	CDS	33455176	33455253	33455176	ID=cds.MS.gene84195.t1;Parent=MS.gene84195.t1
chr7.1	exon	33455617	33455766	33455617	ID=MS.gene84195.t1.exon3;Parent=MS.gene84195.t1
chr7.1	CDS	33455617	33455766	33455617	ID=cds.MS.gene84195.t1;Parent=MS.gene84195.t1
chr7.1	exon	33456089	33456162	33456089	ID=MS.gene84195.t1.exon4;Parent=MS.gene84195.t1
chr7.1	CDS	33456089	33456162	33456089	ID=cds.MS.gene84195.t1;Parent=MS.gene84195.t1
chr7.1	exon	33456733	33456882	33456733	ID=MS.gene84195.t1.exon5;Parent=MS.gene84195.t1
chr7.1	CDS	33456733	33456882	33456733	ID=cds.MS.gene84195.t1;Parent=MS.gene84195.t1
chr7.1	exon	33456983	33457202	33456983	ID=MS.gene84195.t1.exon6;Parent=MS.gene84195.t1
chr7.1	CDS	33456983	33457202	33456983	ID=cds.MS.gene84195.t1;Parent=MS.gene84195.t1

Gene Sequence

>MS.gene84195

ATGAGGCCTAAATTTGTGTTGTTTGGTTCTTCCATTGTTCAATACAATCATTATGGTGAAGGTTGGGGAGCTACTCTTGCTCACTTGTACGGTCGTAAGGTACTCTTTCTTCCTCTTTAAACCGTAGTAACGTCCATCTCTTTTTATAAGTACTTTTTGAGAAAATTTATAGCTAAGTATAGATCCCTTTGTGGTCCGTAAGGGCTAACTCAACTTGAAATGTCGTTATTTACGTTGGACACTTTCACTTGAATTTGAACTCAATATCTCATAATTGTGTGTGTGAGATTTAAGTGGTGTTTGTTTTCGTCTACGAACAAGAAATCTCAGTAGGTGTTCTTTAAGCCACAAATAAAAGGCAATGAACACACAATTTTTGTTAATGAAGTTCGACCAATGGTGCCTACTTTTGCGACTATGGAGCGGTTATAGTTCCATTTATATTATTGTGATGAATTAGAGTTTAAGTGTTATAATTAATATATATAATATTATTACTACGATTCAGTTTACAATATTACCTCTGAATTGTACCTTGTATTCTTTAGTGTCTACTGTCTTGCAGGGGTGGCCCTGAGGGCGGGCTCAAGGGGCGGCAGCCCAGGGCACCACTTTTTTAGGGGCACCAAAATTATTAGGGTGATGTTAACTTATGCCCTAAGTGCACATGTTAAGGAATCCAAAATGGGCAATTTTGCATTGGAAAACATGATAATTTAACTTTTAAGAAGTTGACTGCACGACTTTTGATGCGTATATTTCTATAATAAGTTCCTTAACATGTGCCCTTGAGGGCACAAGTTAACATTTACCAAATTATTATTTTTACTTACTAGTTAGTACTATGTAGATATATTTCTTTTTAATTCACTTTGATTAATTCTATTGAAATTTTTTTTTTTAGATAACTTTGATTATAAATGAATATTTTGCAAAATGAAAAAGCAAGATGAAAAATATTTAAATAATTAAAGGACACAATTTATTATTTCGTCAAGGGCACCAAAAATCTTAGGGCCGACCCTGCTGTCTTGTATATATGAACCTTACTTTAACAAAATCTTATTACCCTAGCCTTGTCTCAATGAACCTGACATGAAGTTACATGTTTCTGTTTCTCAACGAGCATACGAATTAAGTTATCTTTATAAGTGCTTTTAGAGTATCCACAATAGAGATACTCATTTTTAGGTACATAAATGGGTCTTACATGTAAACATCTCTCATTTATAATTTTTTAATAGTAGTATCTAATAAGTATTCAATCCCTCCAACCCAGATCTTATACAAATTTCTTAAATGAGATCCACTAATCAACTATCAATAACTTTATACATTTACATTTTAATTTTTTAATATTAAAAAAATGTGGGTCCCACTTAAGATTAGAGGTCTTAAGTAAGACCCCGGGTCTTATAAGACCCCAACAATTTTTCTCCCAATGAGGGTACCTAATAGGTACCAAGTCTTATATGTTTAAGACTCCCCCATTGTGAATGCTCTTACCGGAATATGATACTAGTACATTAATCAATGACTTTTTAACTTATCATACACCCAACATTGATTTGATGTAGGTTGATGTAATTTTGCGGGGATACGCTGGTTGGAATTCAAGGCGTGGTCTACAAGTTGTGGATGATATTTTTCCTAAGGTATTGAGAATCCGATTGTGGCACTCTTCATGTAATTCAAATTTCTTTCAAAAAAAATGTAATTCAAATTTTTTACCTTCTTTCCTCAGCAATAATATTTTACCCTAAGCTTAATTTCACTTTTTTGATCTACAAGTATTGTCCTTGTGCAAATTTTTTAGGCATTATCTCAATTTTTTAATGAGTGGTTTTTTATTTGTCAAATTGAGAAGATTATATTGATTTACATGGTATTAAACATACTATATTGATCTTGCTGAATAAGGTTCACAACACACATAAATTTTTGTTTATATATGAATGTGATTATAAAATTTTGTTGACAATGATTGACCCTTGTGATATTGGTCATCTCTAATACAGAATACCATTGAGCAACAAGAGCAACCAGCATTAGCGATTGTGTACTTTGGTGGTAATGATTCTCATCTTCCACATCCAAGTGGTCTTGGTCCTCATGTTCCATTGGAGGAATACATAGAAAATATGAGGAACATTGCTAATTATCTAAAGGTAAAATTTGTCATAGTAGAATTTCATTTTCCTATCTTAATTTCATTTTCCTATCTTAATTGTCATTATCATATGGATTAGATGAATTTTTTTTACCTCAAATATTGGTGTAGTCGAACATGTCATATACGACTTATCATATTTCGATAATATCTTTTTCAACTACAATAATTTGGTAAATTCCTTCCGAAACCACATAAAATTATTGTATATCTTAATACATAAAATTCAATATTTATCGATCTTTTTTTTTTTTTTTGAAAAAAATATTTATCTCATGATCTTGAATGTTAAGTTTGACACGACTCCTAATGATTGACAGATAAATTCACCGAAGACTCGACTTATATTCCTCAGTTGTCCTCCCATCAGTGACGAGCAAATAGAAGGCAACATGTAATACCTACAATTGGTTTGCTATTTTTTATTGTTAATTAATCATAATGTCACAGAAAAATTATAGATATATACACATATATCTAGACTATGATTACATAGTGTAACAAAACTAGTTAATTTTTTTATAGACAAATTAGTACTATATTAGTTGTTATGCTAGTATATAAAACATGCACCTAAAATAGTATACCTAGACTTTGATAAGTTTTGTTCGTTTAAGATTGTTTTACAAAATTCTAGAACCTACTAGACTTTTGACCCGTGCGTCGCACGGGTTTTCTCGACTATAATAGAGGCCAATAAATAATCTTTAACCCGTAAGATCATTGATATAGTAAAATATTTTCTTCAAAAAAAAAAGGCAAGAGGATAGGAATGAAATTGGTGTGCAATGCATTTTTTTAGATGAAATTTGTTAGGTTAAATAATTGCAAACCTAATAAAGCAAATGAGCGGGAAAAAATTAGGTTAAGTTGCTGCAGACGTAACAAAATTAATAAATAAGGATTAGATTTTTAATTCCTAACTTTTATGTATTATATAAACAAATTGTTGTAATGAATCCAGTGATGAATTTGGGAAAGCAATAAGGAGAAATGAAGTTCGTAAAATATATTCAGATGCACTTTTACAGATGTGTGATGCTATGGAAATCAAGGCCATTGATTTGTGGTCTTTAATTCAGAGAAGAGAAGATTGGAAAGAAGTTTGCTTCATGTAAGTATGCTCTCATATATGTATATGTCTAAATTAAAATAAAATAAAAAATCAAATCTTCATTTCAATCATTTAATTAAGTGGTTTGGTTGGTTCTTAGTGATGGAGTTCATTTCTCTGCTGAGGGGAGTGAAATGGTGTCAAAGGAAATAATTAAGGTCATCAAAGAAGCAGACTGGAAACCAAGTCTATATTGGAAGACAATGCCAGTTGAATTTGGAGAAGATTCACCATATGATCCACTTCATCCTGATGGAACGTCAACTATTAATATCTCCAATGTTCCATTCCCACATGACGAGGATTGGGAGTGGGAGTAG

Protein sequence

>MS.gene84195.t1

MRPKFVLFGSSIVQYNHYGEGWGATLAHLYGRKVDVILRGYAGWNSRRGLQVVDDIFPKNTIEQQEQPALAIVYFGGNDSHLPHPSGLGPHVPLEEYIENMRNIANYLKINSPKTRLIFLSCPPISDEQIEGNIDEFGKAIRRNEVRKIYSDALLQMCDAMEIKAIDLWSLIQRREDWKEVCFIDGVHFSAEGSEMVSKEIIKVIKEADWKPSLYWKTMPVEFGEDSPYDPLHPDGTSTINISNVPFPHDEDWEWE