Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85553.t1 | XP_003590857.2 | 93.8 | 177 | 7 | 1 | 1 | 177 | 1 | 173 | 4.00E-66 | 261.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85553.t1 | Q9LW68 | 85.4 | 130 | 19 | 0 | 52 | 181 | 43 | 172 | 1.9e-61 | 236.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85553.t1 | G7I5I7 | 93.8 | 177 | 7 | 1 | 1 | 177 | 1 | 173 | 2.9e-66 | 261.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene85553 | 0.811954 | 5.41E-51 | -1.69E-46 |
| MS.gene049350 | MS.gene85553 | 0.828023 | 1.13E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene85553 | 0.821674 | 3.56E-53 | -1.69E-46 |
| MS.gene049850 | MS.gene85553 | 0.822175 | 2.73E-53 | -1.69E-46 |
| MS.gene050137 | MS.gene85553 | 0.811488 | 6.83E-51 | -1.69E-46 |
| MS.gene05045 | MS.gene85553 | 0.813039 | 3.13E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene85553 | 0.828749 | 7.56E-55 | -1.69E-46 |
| MS.gene050901 | MS.gene85553 | 0.820842 | 5.54E-53 | -1.69E-46 |
| MS.gene051018 | MS.gene85553 | 0.826072 | 3.32E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene85553 | 0.819828 | 9.46E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene85553 | 0.81212 | 4.97E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene85553 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene051664 | MS.gene85553 | 0.840827 | 6.88E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene85553 | 0.869961 | 2.09E-66 | -1.69E-46 |
| MS.gene051720 | MS.gene85553 | 0.873656 | 1.24E-67 | -1.69E-46 |
| MS.gene051744 | MS.gene85553 | 0.815008 | 1.15E-51 | -1.69E-46 |
| MS.gene052000 | MS.gene85553 | 0.819439 | 1.16E-52 | -1.69E-46 |
| MS.gene052516 | MS.gene85553 | 0.803654 | 3.14E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene85553 | 0.805758 | 1.14E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene85553 | 0.823403 | 1.41E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene85553 | 0.832587 | 8.68E-56 | -1.69E-46 |
| MS.gene053581 | MS.gene85553 | 0.819287 | 1.26E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene85553 | 0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene85553 | 0.813246 | 2.82E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene85553 | 0.819508 | 1.12E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene85553 | 0.8029 | 4.50E-49 | -1.69E-46 |
| MS.gene054791 | MS.gene85553 | 0.824393 | 8.27E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene85553 | 0.824112 | 9.63E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene85553 | 0.831856 | 1.32E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene85553 | 0.803438 | 3.49E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene85553 | 0.830712 | 2.52E-55 | -1.69E-46 |
| MS.gene055580 | MS.gene85553 | -0.803457 | 3.46E-49 | -1.69E-46 |
| MS.gene056005 | MS.gene85553 | 0.845851 | 3.14E-59 | -1.69E-46 |
| MS.gene056050 | MS.gene85553 | 0.81744 | 3.29E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene85553 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene85553 | 0.823923 | 1.07E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene85553 | 0.800943 | 1.14E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene85553 | 0.83509 | 2.05E-56 | -1.69E-46 |
| MS.gene05894 | MS.gene85553 | 0.826528 | 2.58E-54 | -1.69E-46 |
| MS.gene059015 | MS.gene85553 | 0.807817 | 4.20E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene85553 | 0.812394 | 4.33E-51 | -1.69E-46 |
| MS.gene060519 | MS.gene85553 | 0.850541 | 1.59E-60 | -1.69E-46 |
| MS.gene060587 | MS.gene85553 | 0.814475 | 1.51E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85553.t1 | MTR_1g075990 | 93.103 | 174 | 6 | 3 | 17 | 189 | 13 | 181 | 5.06e-103 | 295 |
| MS.gene85553.t1 | MTR_1g442860 | 71.958 | 189 | 45 | 2 | 1 | 181 | 1 | 189 | 4.26e-89 | 260 |
| MS.gene85553.t1 | MTR_4g094428 | 71.975 | 157 | 34 | 2 | 36 | 192 | 31 | 177 | 1.19e-80 | 240 |
| MS.gene85553.t1 | MTR_5g072510 | 76.296 | 135 | 32 | 0 | 47 | 181 | 27 | 161 | 1.93e-77 | 231 |
| MS.gene85553.t1 | MTR_7g097030 | 86.861 | 137 | 14 | 1 | 53 | 189 | 60 | 192 | 9.75e-76 | 226 |
| MS.gene85553.t1 | MTR_1g069825 | 87.970 | 133 | 12 | 1 | 57 | 189 | 52 | 180 | 1.28e-74 | 224 |
| MS.gene85553.t1 | MTR_4g079930 | 66.013 | 153 | 47 | 1 | 25 | 177 | 2 | 149 | 2.88e-72 | 216 |
| MS.gene85553.t1 | MTR_2g016110 | 73.846 | 130 | 34 | 0 | 48 | 177 | 26 | 155 | 3.72e-71 | 214 |
| MS.gene85553.t1 | MTR_2g092950 | 77.419 | 124 | 28 | 0 | 54 | 177 | 20 | 143 | 4.84e-71 | 213 |
| MS.gene85553.t1 | MTR_2g076400 | 77.236 | 123 | 28 | 0 | 55 | 177 | 31 | 153 | 1.70e-70 | 212 |
| MS.gene85553.t1 | MTR_7g115700 | 62.112 | 161 | 51 | 3 | 30 | 189 | 5 | 156 | 7.63e-67 | 202 |
| MS.gene85553.t1 | MTR_3g031830 | 73.571 | 140 | 35 | 1 | 57 | 196 | 42 | 179 | 2.01e-66 | 203 |
| MS.gene85553.t1 | MTR_1g080210 | 81.600 | 125 | 23 | 0 | 57 | 181 | 40 | 164 | 4.18e-66 | 201 |
| MS.gene85553.t1 | MTR_8g086350 | 73.171 | 123 | 33 | 0 | 55 | 177 | 29 | 151 | 1.70e-55 | 174 |
| MS.gene85553.t1 | MTR_1g114020 | 73.077 | 52 | 14 | 0 | 49 | 100 | 63 | 114 | 4.81e-21 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85553.t1 | AT3G23290 | 90.698 | 129 | 12 | 0 | 53 | 181 | 44 | 172 | 7.53e-78 | 231 |
| MS.gene85553.t1 | AT1G07090 | 70.946 | 148 | 39 | 1 | 47 | 194 | 25 | 168 | 1.59e-76 | 228 |
| MS.gene85553.t1 | AT2G31160 | 75.155 | 161 | 37 | 1 | 24 | 181 | 18 | 178 | 1.80e-75 | 226 |
| MS.gene85553.t1 | AT5G58500 | 74.815 | 135 | 29 | 2 | 56 | 189 | 18 | 148 | 3.21e-73 | 219 |
| MS.gene85553.t1 | AT5G28490 | 73.780 | 164 | 31 | 3 | 28 | 191 | 4 | 155 | 2.08e-69 | 210 |
| MS.gene85553.t1 | AT2G42610 | 69.286 | 140 | 39 | 1 | 38 | 177 | 10 | 145 | 4.25e-69 | 208 |
| MS.gene85553.t1 | AT2G42610 | 69.286 | 140 | 39 | 1 | 38 | 177 | 10 | 145 | 4.25e-69 | 208 |
| MS.gene85553.t1 | AT3G04510 | 78.519 | 135 | 25 | 1 | 57 | 191 | 33 | 163 | 3.15e-66 | 202 |
| MS.gene85553.t1 | AT1G78815 | 70.968 | 124 | 36 | 0 | 54 | 177 | 37 | 160 | 1.88e-64 | 197 |
| MS.gene85553.t1 | AT4G18610 | 69.919 | 123 | 36 | 1 | 56 | 177 | 36 | 158 | 2.48e-61 | 189 |
| MS.gene85553.t1 | AT1G16910 | 61.429 | 140 | 50 | 1 | 54 | 193 | 20 | 155 | 5.28e-59 | 182 |
Find 34 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTACATGCTTCTTCTGTTT+AGG | 0.245569 | 1.3:+54447295 | None:intergenic |
| GTACATGCTTCTTCTGTTTA+GGG | 0.251992 | 1.3:+54447296 | None:intergenic |
| AGAAGAGACTGGAACACTTT+TGG | 0.322091 | 1.3:-54448370 | MS.gene85553:CDS |
| AGAGTGTTTGTGTTTGTTGC+TGG | 0.335361 | 1.3:+54448415 | None:intergenic |
| TTAAGGTATCTTGATCAGTT+TGG | 0.338884 | 1.3:-54448277 | MS.gene85553:CDS |
| TAAGGTATCTTGATCAGTTT+GGG | 0.342770 | 1.3:-54448276 | MS.gene85553:CDS |
| GACTCTTTCTTCGTGAAGTT+AGG | 0.348358 | 1.3:-54448072 | MS.gene85553:CDS |
| GGACAAGGTGCAGGTGGGTT+TGG | 0.354086 | 1.3:+54448211 | None:intergenic |
| TTGTCCTCTCAGACAAGCTT+GGG | 0.367576 | 1.3:-54448188 | MS.gene85553:CDS |
| GGAAGGATACACTTTGGAAT+TGG | 0.368060 | 1.3:-54447323 | MS.gene85553:intron |
| AAACCTGAAGATAACCCTTT+TGG | 0.390636 | 1.3:-54448109 | MS.gene85553:CDS |
| GCACCAAAAGGGTTATCTTC+AGG | 0.403413 | 1.3:+54448106 | None:intergenic |
| TTCTGAGCTGGTTGATGTGT+TGG | 0.404733 | 1.3:+54448486 | None:intergenic |
| ACTCTTTCTTCGTGAAGTTA+GGG | 0.427767 | 1.3:-54448071 | MS.gene85553:CDS |
| CTTGTCCTCTCAGACAAGCT+TGG | 0.437451 | 1.3:-54448189 | MS.gene85553:CDS |
| TGATCAGTTTGGGAAAACTA+AGG | 0.457631 | 1.3:-54448266 | MS.gene85553:CDS |
| GGAAGTCTTGATGCATTGAT+TGG | 0.461550 | 1.3:-54448166 | MS.gene85553:CDS |
| ACAGAAGAAGCATGTACTCT+TGG | 0.477980 | 1.3:-54447290 | MS.gene85553:CDS |
| CTAACAGCACGAGCACCAAA+AGG | 0.492363 | 1.3:+54448094 | None:intergenic |
| AGAGTGAAAGTGGTGGTCTA+TGG | 0.493036 | 1.3:+54448332 | None:intergenic |
| CTTTCACTCTCACGTTGTAG+TGG | 0.531680 | 1.3:-54448319 | MS.gene85553:CDS |
| GTGTTTGTGTTTGTTGCTGG+TGG | 0.560971 | 1.3:+54448418 | None:intergenic |
| AGAGGACAAGGACAAGGTGC+AGG | 0.565916 | 1.3:+54448202 | None:intergenic |
| CTATTGGGAAGGATACACTT+TGG | 0.570184 | 1.3:-54447329 | MS.gene85553:intron |
| CAAGCTTGTCTGAGAGGACA+AGG | 0.577230 | 1.3:+54448190 | None:intergenic |
| CTACAACGTGAGAGTGAAAG+TGG | 0.580478 | 1.3:+54448322 | None:intergenic |
| GGACAAGGACAAGGTGCAGG+TGG | 0.580568 | 1.3:+54448205 | None:intergenic |
| CTTCCCCAAGCTTGTCTGAG+AGG | 0.586547 | 1.3:+54448184 | None:intergenic |
| TAACAGCACGAGCACCAAAA+GGG | 0.587993 | 1.3:+54448095 | None:intergenic |
| GACTCTCAATCTAAAGCTAG+AGG | 0.600860 | 1.3:-54448049 | MS.gene85553:intron |
| GACAAGGACAAGGTGCAGGT+GGG | 0.650602 | 1.3:+54448206 | None:intergenic |
| TGTCCTCTCAGACAAGCTTG+GGG | 0.658773 | 1.3:-54448187 | MS.gene85553:CDS |
| TGTCTGAGAGGACAAGGACA+AGG | 0.664143 | 1.3:+54448196 | None:intergenic |
| CAACGTGAGAGTGAAAGTGG+TGG | 0.746060 | 1.3:+54448325 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAAACAAATATATATTTT+TGG | + | chr1.3:54447966-54447985 | None:intergenic | 10.0% |
| !!! | TATAACTTTTAACAAATTTA+AGG | + | chr1.3:54448028-54448047 | None:intergenic | 10.0% |
| !!! | TTAAATTTAGAGGTTATTTT+TGG | + | chr1.3:54448414-54448433 | None:intergenic | 15.0% |
| !! | TGAATAGCATTTAAATTTAG+AGG | + | chr1.3:54448424-54448443 | None:intergenic | 20.0% |
| !!! | AATCATTAACAACAGTTTTT+TGG | - | chr1.3:54448243-54448262 | MS.gene85553:CDS | 20.0% |
| !!! | TCATTAACCACAAAATTTTT+AGG | + | chr1.3:54448295-54448314 | None:intergenic | 20.0% |
| ! | ACTAATTAAGTACTAAGCAA+TGG | - | chr1.3:54447876-54447895 | MS.gene85553:intron | 25.0% |
| ! | ACTTAATTAGTTGCATTTGA+TGG | + | chr1.3:54447867-54447886 | None:intergenic | 25.0% |
| ! | ATTAACACGATTCAAATACA+CGG | - | chr1.3:54448164-54448183 | MS.gene85553:CDS | 25.0% |
| ! | TTGAAGTTTCAACTATATGA+GGG | - | chr1.3:54448050-54448069 | MS.gene85553:CDS | 25.0% |
| ! | TTTGCTAATACTTGCATATT+TGG | + | chr1.3:54448103-54448122 | None:intergenic | 25.0% |
| !! | ATTTTGTGGTTAATGAAGAT+AGG | - | chr1.3:54448299-54448318 | MS.gene85553:CDS | 25.0% |
| !! | CACATGTTCTTGAATTTTTA+AGG | - | chr1.3:54447541-54447560 | MS.gene85553:intron | 25.0% |
| !! | TTGAACACCTAAAAATTTTG+TGG | - | chr1.3:54448285-54448304 | MS.gene85553:CDS | 25.0% |
| !! | TTTGAAGTTTCAACTATATG+AGG | - | chr1.3:54448049-54448068 | MS.gene85553:intron | 25.0% |
| AGAATCAAAAAAGAAGAGAC+TGG | - | chr1.3:54447454-54447473 | MS.gene85553:intron | 30.0% | |
| TAATTAGTTGCATTTGATGG+TGG | + | chr1.3:54447864-54447883 | None:intergenic | 30.0% | |
| ! | TAAGGTATCTTGATCAGTTT+GGG | - | chr1.3:54447559-54447578 | MS.gene85553:intron | 30.0% |
| ! | TTAAGGTATCTTGATCAGTT+TGG | - | chr1.3:54447558-54447577 | MS.gene85553:intron | 30.0% |
| !!! | TCACAGATTTGTCCATTTTT+TGG | - | chr1.3:54447597-54447616 | MS.gene85553:intron | 30.0% |
| ACTCTTTCTTCGTGAAGTTA+GGG | - | chr1.3:54447764-54447783 | MS.gene85553:intron | 35.0% | |
| AGTACATGCTTCTTCTGTTT+AGG | + | chr1.3:54448543-54448562 | None:intergenic | 35.0% | |
| GTACATGCTTCTTCTGTTTA+GGG | + | chr1.3:54448542-54448561 | None:intergenic | 35.0% | |
| TGATCAGTTTGGGAAAACTA+AGG | - | chr1.3:54447569-54447588 | MS.gene85553:intron | 35.0% | |
| ! | AAACCTGAAGATAACCCTTT+TGG | - | chr1.3:54447726-54447745 | MS.gene85553:intron | 35.0% |
| ! | GGTTAATGAAGATAGGTTGA+TGG | - | chr1.3:54448306-54448325 | MS.gene85553:CDS | 35.0% |
| !! | TCAACTATATGAGGGTGTTA+GGG | - | chr1.3:54448058-54448077 | MS.gene85553:CDS | 35.0% |
| !! | TTCAACTATATGAGGGTGTT+AGG | - | chr1.3:54448057-54448076 | MS.gene85553:CDS | 35.0% |
| !!! | TGGTTACTAGTTTTGACACA+TGG | - | chr1.3:54448326-54448345 | MS.gene85553:CDS | 35.0% |
| ATACTGAGTGACTGCACTAT+TGG | - | chr1.3:54448490-54448509 | MS.gene85553:CDS | 40.0% | |
| CTATTGGGAAGGATACACTT+TGG | - | chr1.3:54448506-54448525 | MS.gene85553:CDS | 40.0% | |
| GACTCTTTCTTCGTGAAGTT+AGG | - | chr1.3:54447763-54447782 | MS.gene85553:intron | 40.0% | |
| GGGTTTGGATGACCAAAAAA+TGG | + | chr1.3:54447612-54447631 | None:intergenic | 40.0% | |
| TACTGAGTGACTGCACTATT+GGG | - | chr1.3:54448491-54448510 | MS.gene85553:CDS | 40.0% | |
| ! | ACAGAAGAAGCATGTACTCT+TGG | - | chr1.3:54448545-54448564 | MS.gene85553:CDS | 40.0% |
| ! | AGAAGAGACTGGAACACTTT+TGG | - | chr1.3:54447465-54447484 | MS.gene85553:intron | 40.0% |
| ! | AGAGTGTTTGTGTTTGTTGC+TGG | + | chr1.3:54447423-54447442 | None:intergenic | 40.0% |
| ! | GACTCTCAATCTAAAGCTAG+AGG | - | chr1.3:54447786-54447805 | MS.gene85553:intron | 40.0% |
| ! | GGAAGTCTTGATGCATTGAT+TGG | - | chr1.3:54447669-54447688 | MS.gene85553:intron | 40.0% |
| !! | CTGCTTTTGAAGAGAATGGT+GGG | - | chr1.3:54447703-54447722 | MS.gene85553:intron | 40.0% |
| !! | GGAAGGATACACTTTGGAAT+TGG | - | chr1.3:54448512-54448531 | MS.gene85553:CDS | 40.0% |
| !! | GTTTTTGTTGTCTTCTGAGC+TGG | + | chr1.3:54447364-54447383 | None:intergenic | 40.0% |
| !! | TTAGTTGCATTTGATGGTGG+TGG | + | chr1.3:54447861-54447880 | None:intergenic | 40.0% |
| !!! | AGAGCTGCTTTTGAAGAGAA+TGG | - | chr1.3:54447699-54447718 | MS.gene85553:intron | 40.0% |
| AGAGTGAAAGTGGTGGTCTA+TGG | + | chr1.3:54447506-54447525 | None:intergenic | 45.0% | |
| CTACAACGTGAGAGTGAAAG+TGG | + | chr1.3:54447516-54447535 | None:intergenic | 45.0% | |
| CTTTCACTCTCACGTTGTAG+TGG | - | chr1.3:54447516-54447535 | MS.gene85553:intron | 45.0% | |
| GCACCAAAAGGGTTATCTTC+AGG | + | chr1.3:54447732-54447751 | None:intergenic | 45.0% | |
| TAACAGCACGAGCACCAAAA+GGG | + | chr1.3:54447743-54447762 | None:intergenic | 45.0% | |
| TTGTCCTCTCAGACAAGCTT+GGG | - | chr1.3:54447647-54447666 | MS.gene85553:intron | 45.0% | |
| ! | GTGTTTGTGTTTGTTGCTGG+TGG | + | chr1.3:54447420-54447439 | None:intergenic | 45.0% |
| ! | TTCTGAGCTGGTTGATGTGT+TGG | + | chr1.3:54447352-54447371 | None:intergenic | 45.0% |
| !!! | GCTGCTTTTGAAGAGAATGG+TGG | - | chr1.3:54447702-54447721 | MS.gene85553:intron | 45.0% |
| CAACGTGAGAGTGAAAGTGG+TGG | + | chr1.3:54447513-54447532 | None:intergenic | 50.0% | |
| CAAGCTTGTCTGAGAGGACA+AGG | + | chr1.3:54447648-54447667 | None:intergenic | 50.0% | |
| CTAACAGCACGAGCACCAAA+AGG | + | chr1.3:54447744-54447763 | None:intergenic | 50.0% | |
| CTTGTCCTCTCAGACAAGCT+TGG | - | chr1.3:54447646-54447665 | MS.gene85553:intron | 50.0% | |
| GAGTGACTGCACTATTGGGA+AGG | - | chr1.3:54448495-54448514 | MS.gene85553:CDS | 50.0% | |
| TGTCCTCTCAGACAAGCTTG+GGG | - | chr1.3:54447648-54447667 | MS.gene85553:intron | 50.0% | |
| TGTCTGAGAGGACAAGGACA+AGG | + | chr1.3:54447642-54447661 | None:intergenic | 50.0% | |
| !! | GGTGGTGGTGGTTGAATTTG+AGG | + | chr1.3:54447843-54447862 | None:intergenic | 50.0% |
| !! | GTTGCATTTGATGGTGGTGG+TGG | + | chr1.3:54447858-54447877 | None:intergenic | 50.0% |
| AGAGGACAAGGACAAGGTGC+AGG | + | chr1.3:54447636-54447655 | None:intergenic | 55.0% | |
| CTTCCCCAAGCTTGTCTGAG+AGG | + | chr1.3:54447654-54447673 | None:intergenic | 55.0% | |
| GACAAGGACAAGGTGCAGGT+GGG | + | chr1.3:54447632-54447651 | None:intergenic | 55.0% | |
| !! | GCATTTGATGGTGGTGGTGG+TGG | + | chr1.3:54447855-54447874 | None:intergenic | 55.0% |
| GGACAAGGACAAGGTGCAGG+TGG | + | chr1.3:54447633-54447652 | None:intergenic | 60.0% | |
| ! | GGACAAGGTGCAGGTGGGTT+TGG | + | chr1.3:54447627-54447646 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54447279 | 54448578 | 54447279 | ID=MS.gene85553 |
| chr1.3 | mRNA | 54447279 | 54448578 | 54447279 | ID=MS.gene85553.t1;Parent=MS.gene85553 |
| chr1.3 | exon | 54448050 | 54448578 | 54448050 | ID=MS.gene85553.t1.exon1;Parent=MS.gene85553.t1 |
| chr1.3 | CDS | 54448050 | 54448578 | 54448050 | ID=cds.MS.gene85553.t1;Parent=MS.gene85553.t1 |
| chr1.3 | exon | 54447279 | 54447340 | 54447279 | ID=MS.gene85553.t1.exon2;Parent=MS.gene85553.t1 |
| chr1.3 | CDS | 54447279 | 54447340 | 54447279 | ID=cds.MS.gene85553.t1;Parent=MS.gene85553.t1 |
| Gene Sequence |
| Protein sequence |
