AlfalfaGEDB | MS.gene85944

M. sativa cultivar XinJiangDaYe / MS.gene85944

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85944.t1	KEH39615.1	90.3	299	24	5	1	297	1	296	2.80E-135	491.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85944.t1	Q9T072	38.1	197	110	3	96	288	116	304	7.1e-23	109.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85944.t1	A0A072VN90	90.3	299	24	5	1	297	1	296	2.0e-135	491.5

TFs/TRs:

Gene ID	Type	Classification
MS.gene85944.t1	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene85944	0.819479	1.14E-52	-1.69E-46
MS.gene049681	MS.gene85944	0.816485	5.40E-52	-1.69E-46
MS.gene050122	MS.gene85944	0.852518	4.38E-61	-1.69E-46
MS.gene05105	MS.gene85944	0.803529	3.34E-49	-1.69E-46
MS.gene051255	MS.gene85944	0.839059	1.99E-57	-1.69E-46
MS.gene051877	MS.gene85944	0.804349	2.25E-49	-1.69E-46
MS.gene052011	MS.gene85944	-0.806001	1.02E-49	-1.69E-46
MS.gene052253	MS.gene85944	0.822089	2.86E-53	-1.69E-46
MS.gene052485	MS.gene85944	0.824392	8.27E-54	-1.69E-46
MS.gene052711	MS.gene85944	0.835876	1.30E-56	-1.69E-46
MS.gene053813	MS.gene85944	0.818153	2.27E-52	-1.69E-46
MS.gene054010	MS.gene85944	0.849618	2.88E-60	-1.69E-46
MS.gene054011	MS.gene85944	0.8363	1.01E-56	-1.69E-46
MS.gene054012	MS.gene85944	0.837144	6.18E-57	-1.69E-46
MS.gene054013	MS.gene85944	0.836129	1.12E-56	-1.69E-46
MS.gene054173	MS.gene85944	0.815937	7.15E-52	-1.69E-46
MS.gene054183	MS.gene85944	0.83206	1.17E-55	-1.69E-46
MS.gene054556	MS.gene85944	0.80384	2.88E-49	-1.69E-46
MS.gene055277	MS.gene85944	0.802312	5.95E-49	-1.69E-46
MS.gene055604	MS.gene85944	0.847707	9.75E-60	-1.69E-46
MS.gene055911	MS.gene85944	0.810577	1.08E-50	-1.69E-46
MS.gene05602	MS.gene85944	0.817505	3.19E-52	-1.69E-46
MS.gene056191	MS.gene85944	0.829752	4.32E-55	-1.69E-46
MS.gene056407	MS.gene85944	0.807398	5.15E-50	-1.69E-46
MS.gene056410	MS.gene85944	0.801512	8.70E-49	-1.69E-46
MS.gene056902	MS.gene85944	0.846999	1.53E-59	-1.69E-46
MS.gene057469	MS.gene85944	0.814045	1.88E-51	-1.69E-46
MS.gene057749	MS.gene85944	0.821651	3.60E-53	-1.69E-46
MS.gene057823	MS.gene85944	0.828767	7.49E-55	-1.69E-46
MS.gene058948	MS.gene85944	0.808692	2.73E-50	-1.69E-46
MS.gene05907	MS.gene85944	0.801512	8.70E-49	-1.69E-46
MS.gene059294	MS.gene85944	0.826036	3.38E-54	-1.69E-46
MS.gene059420	MS.gene85944	0.850201	1.98E-60	-1.69E-46
MS.gene06037	MS.gene85944	0.805566	1.25E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85944.t1	MTR_2g104490	90.301	299	24	5	1	297	1	296	0.0	532
MS.gene85944.t1	MTR_2g104490	90.000	290	25	4	1	289	1	287	0.0	519
MS.gene85944.t1	MTR_2g104550	78.983	295	52	6	1	289	1	291	1.41e-153	432
MS.gene85944.t1	MTR_4g009540	42.727	330	128	10	1	289	1	310	1.35e-67	213
MS.gene85944.t1	MTR_4g009540	42.424	330	129	10	1	289	1	310	8.16e-67	212
MS.gene85944.t1	MTR_4g009110	41.279	344	141	9	1	292	1	335	7.40e-65	207
MS.gene85944.t1	MTR_8g009020	47.085	223	105	5	76	289	84	302	5.85e-51	171
MS.gene85944.t1	MTR_7g080780	36.667	330	146	7	1	289	1	308	1.08e-47	162
MS.gene85944.t1	MTR_2g104500	40.221	271	135	6	23	289	4	251	1.59e-47	160
MS.gene85944.t1	MTR_7g080780	36.741	313	137	6	18	289	3	295	4.42e-46	158
MS.gene85944.t1	MTR_8g069740	40.072	277	136	10	25	288	6	265	1.82e-44	152
MS.gene85944.t1	MTR_2g104530	47.027	185	92	3	108	289	72	253	1.35e-41	145
MS.gene85944.t1	MTR_8g009010	38.768	276	117	8	31	289	11	251	5.84e-40	142
MS.gene85944.t1	MTR_5g014520	41.778	225	102	5	81	291	102	311	7.90e-40	142
MS.gene85944.t1	MTR_5g014600	39.362	282	133	12	41	289	38	314	8.42e-40	142
MS.gene85944.t1	MTR_6g047570	39.147	258	130	9	44	289	69	311	5.08e-36	132
MS.gene85944.t1	MTR_0246s0020	39.316	234	116	6	81	289	122	354	1.57e-35	131
MS.gene85944.t1	MTR_0246s0020	38.889	234	117	6	81	289	122	354	5.14e-35	130
MS.gene85944.t1	MTR_0250s0040	40.000	185	105	4	109	289	58	240	6.53e-34	125
MS.gene85944.t1	MTR_4g066460	36.929	241	133	6	58	289	74	304	1.61e-33	125
MS.gene85944.t1	MTR_4g067010	43.114	167	92	2	124	289	132	296	1.71e-33	125
MS.gene85944.t1	MTR_2g010450	43.529	170	89	3	135	297	173	342	2.09e-33	125
MS.gene85944.t1	MTR_2g104560	42.614	176	87	3	121	289	36	204	4.35e-33	121
MS.gene85944.t1	MTR_0011s0260	45.455	154	80	3	139	289	183	335	4.45e-33	125
MS.gene85944.t1	MTR_4g092700	43.030	165	88	2	139	297	158	322	5.19e-33	124
MS.gene85944.t1	MTR_5g014640	33.755	237	141	6	69	297	87	315	3.94e-32	121
MS.gene85944.t1	MTR_4g097940	41.622	185	94	5	122	297	138	317	5.09e-32	121
MS.gene85944.t1	MTR_4g097920	41.622	185	94	5	122	297	123	302	1.28e-31	120
MS.gene85944.t1	MTR_0011s0210	45.455	154	80	3	139	289	183	335	1.38e-31	120
MS.gene85944.t1	MTR_4g097920	41.622	185	94	5	122	297	138	317	1.68e-31	120
MS.gene85944.t1	MTR_5g014560	34.495	287	136	11	21	289	31	283	2.65e-29	113
MS.gene85944.t1	MTR_2g104650	33.696	276	143	9	23	289	4	248	2.92e-29	112
MS.gene85944.t1	MTR_4g097950	38.071	197	110	2	105	289	33	229	2.08e-28	110
MS.gene85944.t1	MTR_0246s0050	37.634	186	101	4	106	289	124	296	2.87e-28	111
MS.gene85944.t1	MTR_4g066380	35.745	235	133	4	58	289	82	301	3.07e-28	111
MS.gene85944.t1	MTR_2g104590	36.019	211	110	6	84	289	13	203	3.57e-28	108
MS.gene85944.t1	MTR_4g098035	37.634	186	101	4	106	289	145	317	3.77e-28	111
MS.gene85944.t1	MTR_7g451650	43.609	133	61	2	162	291	57	178	1.07e-22	93.2
MS.gene85944.t1	MTR_7g451650	38.788	165	86	3	129	289	23	176	3.69e-22	92.0
MS.gene85944.t1	MTR_7g050350	41.600	125	59	2	168	289	1	114	2.68e-19	82.4
MS.gene85944.t1	MTR_7g451650	41.600	125	59	2	168	289	1	114	2.68e-19	82.4
MS.gene85944.t1	MTR_4g009420	40.000	130	62	2	162	291	65	178	1.13e-17	80.1
MS.gene85944.t1	MTR_4g009420	39.062	128	62	2	162	289	65	176	3.41e-17	78.6
MS.gene85944.t1	MTR_4g009510	38.194	144	73	4	150	289	53	184	1.16e-16	77.4
MS.gene85944.t1	MTR_6g047550	39.806	103	61	1	116	217	149	251	2.83e-15	74.7
MS.gene85944.t1	MTR_8g067280	30.233	172	96	4	121	273	443	609	6.15e-15	75.5
MS.gene85944.t1	MTR_5g014550	39.516	124	69	3	169	288	54	175	9.84e-15	71.6
MS.gene85944.t1	MTR_8g024790	27.647	170	110	5	128	291	279	441	1.16e-14	74.3
MS.gene85944.t1	MTR_5g030430	25.431	232	148	4	66	273	410	640	1.72e-14	73.9
MS.gene85944.t1	MTR_8g027495	31.496	127	78	4	138	264	457	574	4.05e-13	70.1
MS.gene85944.t1	MTR_7g117670	34.211	114	61	2	138	247	401	504	1.45e-12	68.2
MS.gene85944.t1	MTR_1g072320	24.862	181	122	3	104	270	431	611	7.13e-12	66.2
MS.gene85944.t1	MTR_8g024770	23.415	205	140	7	98	292	236	433	9.56e-12	65.5
MS.gene85944.t1	MTR_7g096350	37.363	91	54	2	128	215	343	433	5.37e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85944.t1	AT4G37850	40.659	182	99	4	113	288	126	304	3.92e-33	124
MS.gene85944.t1	AT4G37850	40.659	182	99	4	113	288	126	304	3.92e-33	124
MS.gene85944.t1	AT2G22750	37.333	225	120	6	77	288	65	281	1.28e-29	114
MS.gene85944.t1	AT2G22760	42.771	166	90	2	131	291	111	276	1.39e-29	114
MS.gene85944.t1	AT2G22750	37.333	225	120	6	77	288	65	281	1.39e-29	114
MS.gene85944.t1	AT2G22750	37.333	225	120	6	77	288	89	305	1.92e-29	114
MS.gene85944.t1	AT2G22750	37.333	225	120	6	77	288	93	309	1.97e-29	114
MS.gene85944.t1	AT2G22750	37.333	225	120	6	77	288	93	309	2.11e-29	114
MS.gene85944.t1	AT2G22760	42.073	164	90	2	131	289	111	274	1.61e-28	111
MS.gene85944.t1	AT2G22770	34.389	221	114	5	91	289	88	299	8.44e-24	99.4
MS.gene85944.t1	AT4G09820	33.803	142	76	2	129	270	353	476	3.57e-16	79.0
MS.gene85944.t1	AT5G46760	28.112	249	151	9	40	273	320	555	6.48e-16	78.2
MS.gene85944.t1	AT4G17880	27.650	217	141	5	62	273	347	552	7.50e-16	78.2
MS.gene85944.t1	AT2G46510	36.800	125	62	4	122	245	377	485	1.05e-14	74.7
MS.gene85944.t1	AT1G32640	28.571	182	111	7	122	288	434	611	6.85e-13	69.3

Find 51 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCAACCTGTTACATATTC+TGG	0.210205	2.1:-1169344	MS.gene85944:CDS
CTACTTCTACTCTTTGTTCT+TGG	0.252338	2.1:+1169155	None:intergenic
GCTAGCAGTGTATTGGCTTT+TGG	0.252967	2.1:-1168425	MS.gene85944:CDS
GATTCTTTGCTATTCTTGTT+TGG	0.275304	2.1:+1168653	None:intergenic
ACTTCTTGTTCTGATTCTTC+TGG	0.307827	2.1:+1169179	None:intergenic
TGATGTTAAAGCAAGAATAT+TGG	0.324656	2.1:-1168543	MS.gene85944:CDS
GCACTTTCAGCTACTATTCC+TGG	0.324686	2.1:-1168999	MS.gene85944:CDS
TCAGTGTTTGGATCACATTA+TGG	0.344284	2.1:-1169063	MS.gene85944:CDS
AGTAGTAGTAGCTGGTATTA+TGG	0.354699	2.1:+1169205	None:intergenic
TAGAAGTGGTTCTCAGTGTT+TGG	0.364117	2.1:-1169075	MS.gene85944:CDS
TGTCACTGCTAGCAGTGTAT+TGG	0.365840	2.1:-1168432	MS.gene85944:CDS
TGAGCCATCCATCTCATTAG+AGG	0.377502	2.1:+1169307	None:intergenic
AAGTAGTAATAAGAGGAGTT+TGG	0.386060	2.1:-1169138	MS.gene85944:CDS
CTGCTTCCAGAATATGTAAC+AGG	0.414669	2.1:+1169338	None:intergenic
AGAGTAGAAGTAGTAATAAG+AGG	0.424376	2.1:-1169145	MS.gene85944:CDS
TGGCTTTACTATTGTCGCTC+AGG	0.443880	2.1:-1168390	MS.gene85944:CDS
GGAACATTGGCCTCTTCATT+CGG	0.453854	2.1:-1169600	MS.gene85944:intron
AGAACATCATGGAGGAATCA+TGG	0.464890	2.1:-1169622	None:intergenic
TTCTACTCTTCTTTCCACTT+TGG	0.465419	2.1:+1169093	None:intergenic
TTTATTACCTTCTTCAAGCC+AGG	0.465921	2.1:+1168981	None:intergenic
AAAGATAGAATAAATGTCCT+TGG	0.468384	2.1:+1169239	None:intergenic
AGCAAGAATATTGGAAAATG+AGG	0.474113	2.1:-1168534	MS.gene85944:CDS
TAATGGTGACAATAGGAATT+GGG	0.480317	2.1:-1169446	MS.gene85944:intron
TACCACCTCAAATTCTGATC+AGG	0.481127	2.1:-1168588	MS.gene85944:CDS
ATGGATGGCTCAGATTGCTC+AGG	0.485183	2.1:-1169296	MS.gene85944:CDS
TGGAGGAATCATGGGAACAT+TGG	0.515296	2.1:-1169613	MS.gene85944:CDS
TACTATTCCTGGCTTGAAGA+AGG	0.517604	2.1:-1168988	MS.gene85944:intron
TCTGGTGTAGTAGTAGTAGC+TGG	0.520741	2.1:+1169197	None:intergenic
ATAGGAATTGGGTGATGTTG+AGG	0.530496	2.1:-1169435	MS.gene85944:intron
GCAATCCTGATCAGAATTTG+AGG	0.532272	2.1:+1168583	None:intergenic
TCTTTCATCCTCTAATGAGA+TGG	0.562481	2.1:-1169315	MS.gene85944:CDS
AGTGGAAAGAAGAGTAGAAG+TGG	0.563816	2.1:-1169089	MS.gene85944:CDS
GGTGATGTTGAGGATTTGCT+AGG	0.567202	2.1:-1169425	MS.gene85944:CDS
TAGAATAAATGTCCTTGGAG+TGG	0.581040	2.1:+1169244	None:intergenic
ATGGACAAGAACTATATACT+TGG	0.584966	2.1:-1168731	MS.gene85944:CDS
GCAAAAGCTAGTAACCAAAG+TGG	0.590525	2.1:-1169107	MS.gene85944:CDS
TGGACGGTGTTGATGAAGGA+TGG	0.592345	2.1:+1169264	None:intergenic
GGAGTGGACGGTGTTGATGA+AGG	0.594219	2.1:+1169260	None:intergenic
GAACATCATGGAGGAATCAT+GGG	0.596545	2.1:-1169621	None:intergenic
ATAAATGTCCTTGGAGTGGA+CGG	0.600736	2.1:+1169248	None:intergenic
CATTCAGATCCACTGTGAGA+AGG	0.601974	2.1:-1168507	MS.gene85944:CDS
TCATCCTCTAATGAGATGGA+TGG	0.603818	2.1:-1169311	MS.gene85944:CDS
CTTGCTTTAACATCAAAGAG+TGG	0.605135	2.1:+1168551	None:intergenic
AATATGTAACAGGTTGCTGA+AGG	0.616197	2.1:+1169348	None:intergenic
CATCAACACCGTCCACTCCA+AGG	0.620000	2.1:-1169256	MS.gene85944:CDS
AGAACGTGTGAAGGAGCTAG+AGG	0.643700	2.1:-1168678	MS.gene85944:CDS
GTGATGTTGAGGATTTGCTA+GGG	0.643753	2.1:-1169424	MS.gene85944:CDS
ACTACTTCAAGAACGTGTGA+AGG	0.653803	2.1:-1168687	MS.gene85944:CDS
TGGATGGCTCAGATTGCTCA+GGG	0.676528	2.1:-1169295	MS.gene85944:CDS
TGTCAATTTCCTTCTCACAG+TGG	0.679003	2.1:+1168498	None:intergenic
ATCCTGATCAGAATTTGAGG+TGG	0.691103	2.1:+1168586	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAAATAATCATTTCAATTAA+TGG	-	chr2.1:1168509-1168528	MS.gene85944:CDS	10.0%
!!	TGCATAAATTAATTAATAGA+TGG	-	chr2.1:1169222-1169241	MS.gene85944:CDS	15.0%
!!!	ATTAAGAGCACTAATTAAAT+TGG	+	chr2.1:1169031-1169050	None:intergenic	20.0%
!!!	ATTTTATAACGGATTGAATT+GGG	-	chr2.1:1169184-1169203	MS.gene85944:CDS	20.0%
!!!	TATTTTATAACGGATTGAAT+TGG	-	chr2.1:1169183-1169202	MS.gene85944:CDS	20.0%
!!!	TTAAGAGCACTAATTAAATT+GGG	+	chr2.1:1169030-1169049	None:intergenic	20.0%
!	AAAGATAGAATAAATGTCCT+TGG	+	chr2.1:1168736-1168755	None:intergenic	25.0%
!	TGATGTTAAAGCAAGAATAT+TGG	-	chr2.1:1169429-1169448	MS.gene85944:CDS	25.0%
!	TTTATGTCAGAAAATAGTAC+TGG	+	chr2.1:1168493-1168512	None:intergenic	25.0%
!	TTTCAATTAATGGTGACAAT+AGG	-	chr2.1:1168519-1168538	MS.gene85944:CDS	25.0%
!!!	TGTTCTATGTCATTTTTTTG+AGG	-	chr2.1:1168441-1168460	MS.gene85944:CDS	25.0%
	AAGTAGTAATAAGAGGAGTT+TGG	-	chr2.1:1168834-1168853	MS.gene85944:intron	30.0%
	AGAAGAACATATTAATCCCT+CGG	+	chr2.1:1169132-1169151	None:intergenic	30.0%
	AGAGTAGAAGTAGTAATAAG+AGG	-	chr2.1:1168827-1168846	MS.gene85944:intron	30.0%
	AGCAAGAATATTGGAAAATG+AGG	-	chr2.1:1169438-1169457	MS.gene85944:intron	30.0%
	ATGGACAAGAACTATATACT+TGG	-	chr2.1:1169241-1169260	MS.gene85944:CDS	30.0%
	TAATGGTGACAATAGGAATT+GGG	-	chr2.1:1168526-1168545	MS.gene85944:CDS	30.0%
	TTAATGGTGACAATAGGAAT+TGG	-	chr2.1:1168525-1168544	MS.gene85944:CDS	30.0%
!!	AGTATTTTTACCGAATGAAG+AGG	+	chr2.1:1168385-1168404	None:intergenic	30.0%
!!	GATTCTTTGCTATTCTTGTT+TGG	+	chr2.1:1169322-1169341	None:intergenic	30.0%
	AATATGTAACAGGTTGCTGA+AGG	+	chr2.1:1168627-1168646	None:intergenic	35.0%
	ACTTCTTGTTCTGATTCTTC+TGG	+	chr2.1:1168796-1168815	None:intergenic	35.0%
	AGTAGTAGTAGCTGGTATTA+TGG	+	chr2.1:1168770-1168789	None:intergenic	35.0%
	CTACTTCTACTCTTTGTTCT+TGG	+	chr2.1:1168820-1168839	None:intergenic	35.0%
	CTTGCTTTAACATCAAAGAG+TGG	+	chr2.1:1169424-1169443	None:intergenic	35.0%
	TAGAATAAATGTCCTTGGAG+TGG	+	chr2.1:1168731-1168750	None:intergenic	35.0%
	TCAGTGTTTGGATCACATTA+TGG	-	chr2.1:1168909-1168928	MS.gene85944:intron	35.0%
	TCTTTCATCCTCTAATGAGA+TGG	-	chr2.1:1168657-1168676	MS.gene85944:CDS	35.0%
	TTAATCCCTCGGTTAAATAC+CGG	+	chr2.1:1169121-1169140	None:intergenic	35.0%
	TTCTACTCTTCTTTCCACTT+TGG	+	chr2.1:1168882-1168901	None:intergenic	35.0%
	TTTATTACCTTCTTCAAGCC+AGG	+	chr2.1:1168994-1169013	None:intergenic	35.0%
!!	GTAGAAAGATTGATTTGTCC+CGG	-	chr2.1:1169099-1169118	MS.gene85944:CDS	35.0%
	ACTACTTCAAGAACGTGTGA+AGG	-	chr2.1:1169285-1169304	MS.gene85944:CDS	40.0%
	AGTGGAAAGAAGAGTAGAAG+TGG	-	chr2.1:1168883-1168902	MS.gene85944:intron	40.0%
	ATAAATGTCCTTGGAGTGGA+CGG	+	chr2.1:1168727-1168746	None:intergenic	40.0%
	ATAGGAATTGGGTGATGTTG+AGG	-	chr2.1:1168537-1168556	MS.gene85944:CDS	40.0%
	ATCCTGATCAGAATTTGAGG+TGG	+	chr2.1:1169389-1169408	None:intergenic	40.0%
	CAGCAACCTGTTACATATTC+TGG	-	chr2.1:1168628-1168647	MS.gene85944:CDS	40.0%
	CTGCTTCCAGAATATGTAAC+AGG	+	chr2.1:1168637-1168656	None:intergenic	40.0%
	GCAAAAGCTAGTAACCAAAG+TGG	-	chr2.1:1168865-1168884	MS.gene85944:intron	40.0%
	GCAATCCTGATCAGAATTTG+AGG	+	chr2.1:1169392-1169411	None:intergenic	40.0%
	TAATCCCTCGGTTAAATACC+GGG	+	chr2.1:1169120-1169139	None:intergenic	40.0%
	TACCACCTCAAATTCTGATC+AGG	-	chr2.1:1169384-1169403	MS.gene85944:CDS	40.0%
	TAGAAGTGGTTCTCAGTGTT+TGG	-	chr2.1:1168897-1168916	MS.gene85944:intron	40.0%
	TCATCCTCTAATGAGATGGA+TGG	-	chr2.1:1168661-1168680	MS.gene85944:CDS	40.0%
	TGTCAATTTCCTTCTCACAG+TGG	+	chr2.1:1169477-1169496	None:intergenic	40.0%
!	TACTATTCCTGGCTTGAAGA+AGG	-	chr2.1:1168984-1169003	MS.gene85944:intron	40.0%
!!	GTGATGTTGAGGATTTGCTA+GGG	-	chr2.1:1168548-1168567	MS.gene85944:CDS	40.0%
!!!	GCTTTTGGAACTTCAACTCT+TGG	-	chr2.1:1169562-1169581	MS.gene85944:intron	40.0%
	CATTCAGATCCACTGTGAGA+AGG	-	chr2.1:1169465-1169484	MS.gene85944:intron	45.0%
	GCACTTTCAGCTACTATTCC+TGG	-	chr2.1:1168973-1168992	MS.gene85944:intron	45.0%
	TCTGGTGTAGTAGTAGTAGC+TGG	+	chr2.1:1168778-1168797	None:intergenic	45.0%
	TGAGCCATCCATCTCATTAG+AGG	+	chr2.1:1168668-1168687	None:intergenic	45.0%
	TGGAGGAATCATGGGAACAT+TGG	-	chr2.1:1168359-1168378	MS.gene85944:CDS	45.0%
	TGTCACTGCTAGCAGTGTAT+TGG	-	chr2.1:1169540-1169559	MS.gene85944:intron	45.0%
	TTGTCCCGGTATTTAACCGA+GGG	-	chr2.1:1169113-1169132	MS.gene85944:CDS	45.0%
	TTTGTCCCGGTATTTAACCG+AGG	-	chr2.1:1169112-1169131	MS.gene85944:CDS	45.0%
!	GGAACATTGGCCTCTTCATT+CGG	-	chr2.1:1168372-1168391	MS.gene85944:CDS	45.0%
!	GGTGATGTTGAGGATTTGCT+AGG	-	chr2.1:1168547-1168566	MS.gene85944:CDS	45.0%
!	TGGCTTTACTATTGTCGCTC+AGG	-	chr2.1:1169582-1169601	MS.gene85944:intron	45.0%
!!!	GCTAGCAGTGTATTGGCTTT+TGG	-	chr2.1:1169547-1169566	MS.gene85944:intron	45.0%
!!!	TTAATGATTTTATTTTATAA+CGG	-	chr2.1:1169173-1169192	MS.gene85944:CDS	5.0%
	AGAACGTGTGAAGGAGCTAG+AGG	-	chr2.1:1169294-1169313	MS.gene85944:CDS	50.0%
	ATGGATGGCTCAGATTGCTC+AGG	-	chr2.1:1168676-1168695	MS.gene85944:CDS	50.0%
	TGGATGGCTCAGATTGCTCA+GGG	-	chr2.1:1168677-1168696	MS.gene85944:CDS	50.0%
!!	TGGACGGTGTTGATGAAGGA+TGG	+	chr2.1:1168711-1168730	None:intergenic	50.0%
	CATCAACACCGTCCACTCCA+AGG	-	chr2.1:1168716-1168735	MS.gene85944:CDS	55.0%
!!	GGAGTGGACGGTGTTGATGA+AGG	+	chr2.1:1168715-1168734	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	1168358	1169636	1168358	ID=MS.gene85944
chr2.1	mRNA	1168358	1169636	1168358	ID=MS.gene85944.t1;Parent=MS.gene85944
chr2.1	exon	1169601	1169636	1169601	ID=MS.gene85944.t1.exon1;Parent=MS.gene85944.t1
chr2.1	CDS	1169601	1169636	1169601	ID=cds.MS.gene85944.t1;Parent=MS.gene85944.t1
chr2.1	exon	1168989	1169453	1168989	ID=MS.gene85944.t1.exon2;Parent=MS.gene85944.t1
chr2.1	CDS	1168989	1169453	1168989	ID=cds.MS.gene85944.t1;Parent=MS.gene85944.t1
chr2.1	exon	1168358	1168753	1168358	ID=MS.gene85944.t1.exon3;Parent=MS.gene85944.t1
chr2.1	CDS	1168358	1168753	1168358	ID=cds.MS.gene85944.t1;Parent=MS.gene85944.t1

Gene Sequence

>MS.gene85944

ATGGAGGAATCATGGGAACATTGGCCTCTTCATTCGGTAAAAATACTAGCTATACACATCATAAATCATACTAACAAGTAATATGTTCTATGTCATTTTTTTGAGGAAGTTATTTATGTATATTGATAAATACCAGTACTATTTTCTGACATAAATAATCATTTCAATTAATGGTGACAATAGGAATTGGGTGATGTTGAGGATTTGCTAGGGCAATACTGTAAAACTAGTGCTGATGATGAAGAAGAGTTCTTGAGAGACATAATCCTTCAGCAACCTGTTACATATTCTGGAAGCAGTCTTTCATCCTCTAATGAGATGGATGGCTCAGATTGCTCAGGGAAAAAGCTCCATCCTTCATCAACACCGTCCACTCCAAGGACATTTATTCTATCTTTTGATAAATCAACCATAATACCAGCTACTACTACTACACCAGAAGAATCAGAACAAGAAGTACCAAGAACAAAGAGTAGAAGTAGTAATAAGAGGAGTTTGGAAACAAAAGCAAAAGCTAGTAACCAAAGTGGAAAGAAGAGTAGAAGTGGTTCTCAGTGTTTGGATCACATTATGGCTGAGAGAAAAAGAAGACTAGAACTATCACAGAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGGTAATAAAATTACAACTAAAACCCAATTTAATTAGTGCTCTTAATTTTTTTACACTAAACATTTTAGTCACTGTATTATAATAAATAAAATTAGTAGAAAGATTGATTTGTCCCGGTATTTAACCGAGGGATTAATATGTTCTTCTGTAAACATATCAGAGACTAAATTAATGATTTTATTTTATAACGGATTGAATTGGGTCGCAAGAATGATTTTGCATAAATTAATTAATAGATGGACAAGAACTATATACTTGGTGAAGCAATCAGTTATGTGAAACTACTTCAAGAACGTGTGAAGGAGCTAGAGGATCCAAACAAGAATAGCAAAGAATCAACAATAATTCTCAAGAAAACTGATATGTGTGTAAGTGAAGATACCACCTCAAATTCTGATCAGGATTGCTGCAAATCACCACTCTTTGATGTTAAAGCAAGAATATTGGAAAATGAGGTACTCATTCAGATCCACTGTGAGAAGGAAATTGACATTGAGATCAAAATATATAACGTGCTTCAAAATCTTGATCTCTTTGTCACTGCTAGCAGTGTATTGGCTTTTGGAACTTCAACTCTTGGCTTTACTATTGTCGCTCAGGTATGCATAATTTGCAAGAGTTTGATTCCATAA

Protein sequence

>MS.gene85944.t1

MEESWEHWPLHSELGDVEDLLGQYCKTSADDEEEFLRDIILQQPVTYSGSSLSSSNEMDGSDCSGKKLHPSSTPSTPRTFILSFDKSTIIPATTTTPEESEQEVPRTKSRSSNKRSLETKAKASNQSGKKSRSGSQCLDHIMAERKRRLELSQKFIALSATIPGLKKMDKNYILGEAISYVKLLQERVKELEDPNKNSKESTIILKKTDMCVSEDTTSNSDQDCCKSPLFDVKARILENEVLIQIHCEKEIDIEIKIYNVLQNLDLFVTASSVLAFGTSTLGFTIVAQVCIICKSLIP