Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87121.t1 | RHN45282.1 | 95.7 | 208 | 9 | 0 | 32 | 239 | 221 | 428 | 2.50E-118 | 434.9 |
MS.gene87121.t1 | RHN45282.1 | 93.3 | 30 | 2 | 0 | 1 | 30 | 31 | 60 | 1.40E-04 | 57 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87121.t1 | A0A396GW08 | 95.7 | 208 | 9 | 0 | 32 | 239 | 221 | 428 | 1.8e-118 | 434.9 |
MS.gene87121.t1 | A0A396GW08 | 93.3 | 30 | 2 | 0 | 1 | 30 | 31 | 60 | 1.0e-04 | 57.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049230 | MS.gene87121 | 0.825357 | 4.90E-54 | -1.69E-46 |
MS.gene050105 | MS.gene87121 | 0.839473 | 1.55E-57 | -1.69E-46 |
MS.gene050508 | MS.gene87121 | 0.8018 | 7.59E-49 | -1.69E-46 |
MS.gene051122 | MS.gene87121 | 0.834289 | 3.27E-56 | -1.69E-46 |
MS.gene051452 | MS.gene87121 | 0.807041 | 6.13E-50 | -1.69E-46 |
MS.gene051597 | MS.gene87121 | 0.814681 | 1.36E-51 | -1.69E-46 |
MS.gene051926 | MS.gene87121 | -0.805371 | 1.38E-49 | -1.69E-46 |
MS.gene052176 | MS.gene87121 | 0.800048 | 1.73E-48 | -1.69E-46 |
MS.gene052309 | MS.gene87121 | -0.81164 | 6.33E-51 | -1.69E-46 |
MS.gene052426 | MS.gene87121 | 0.808527 | 2.96E-50 | -1.69E-46 |
MS.gene052500 | MS.gene87121 | 0.807927 | 3.98E-50 | -1.69E-46 |
MS.gene052502 | MS.gene87121 | 0.808456 | 3.07E-50 | -1.69E-46 |
MS.gene052586 | MS.gene87121 | 0.804964 | 1.68E-49 | -1.69E-46 |
MS.gene052824 | MS.gene87121 | 0.81343 | 2.57E-51 | -1.69E-46 |
MS.gene052826 | MS.gene87121 | 0.807736 | 4.37E-50 | -1.69E-46 |
MS.gene052954 | MS.gene87121 | 0.863808 | 1.91E-64 | -1.69E-46 |
MS.gene053006 | MS.gene87121 | 0.805036 | 1.62E-49 | -1.69E-46 |
MS.gene053188 | MS.gene87121 | 0.823083 | 1.68E-53 | -1.69E-46 |
MS.gene053963 | MS.gene87121 | 0.823701 | 1.20E-53 | -1.69E-46 |
MS.gene054479 | MS.gene87121 | 0.811808 | 5.82E-51 | -1.69E-46 |
MS.gene054537 | MS.gene87121 | 0.826391 | 2.78E-54 | -1.69E-46 |
MS.gene054657 | MS.gene87121 | 0.84215 | 3.08E-58 | -1.69E-46 |
MS.gene05510 | MS.gene87121 | 0.810851 | 9.39E-51 | -1.69E-46 |
MS.gene055701 | MS.gene87121 | 0.836832 | 7.43E-57 | -1.69E-46 |
MS.gene055841 | MS.gene87121 | 0.812012 | 5.25E-51 | -1.69E-46 |
MS.gene056506 | MS.gene87121 | 0.831747 | 1.40E-55 | -1.69E-46 |
MS.gene056776 | MS.gene87121 | 0.802211 | 6.25E-49 | -1.69E-46 |
MS.gene057079 | MS.gene87121 | 0.825971 | 3.50E-54 | -1.69E-46 |
MS.gene057392 | MS.gene87121 | 0.801733 | 7.83E-49 | -1.69E-46 |
MS.gene05795 | MS.gene87121 | 0.807189 | 5.71E-50 | -1.69E-46 |
MS.gene058126 | MS.gene87121 | 0.800847 | 1.19E-48 | -1.69E-46 |
MS.gene058595 | MS.gene87121 | 0.80434 | 2.26E-49 | -1.69E-46 |
MS.gene059710 | MS.gene87121 | 0.830519 | 2.81E-55 | -1.69E-46 |
MS.gene05979 | MS.gene87121 | 0.80481 | 1.81E-49 | -1.69E-46 |
MS.gene059830 | MS.gene87121 | 0.82125 | 4.46E-53 | -1.69E-46 |
MS.gene060297 | MS.gene87121 | 0.841114 | 5.78E-58 | -1.69E-46 |
MS.gene060586 | MS.gene87121 | 0.803197 | 3.91E-49 | -1.69E-46 |
MS.gene060879 | MS.gene87121 | 0.803102 | 4.09E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87121.t1 | MTR_0064s0160 | 68.720 | 211 | 63 | 2 | 32 | 239 | 234 | 444 | 1.84e-98 | 294 |
MS.gene87121.t1 | MTR_1g061330 | 69.231 | 208 | 58 | 3 | 32 | 235 | 172 | 377 | 1.01e-95 | 285 |
MS.gene87121.t1 | MTR_5g048160 | 58.209 | 201 | 67 | 6 | 32 | 217 | 193 | 391 | 3.76e-66 | 210 |
MS.gene87121.t1 | MTR_0115s0020 | 56.500 | 200 | 69 | 7 | 34 | 217 | 201 | 398 | 4.50e-63 | 202 |
MS.gene87121.t1 | MTR_5g097330 | 28.042 | 189 | 127 | 5 | 31 | 218 | 223 | 403 | 1.22e-14 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 42 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAAGATATCTTCAGGTTTC+TGG | 0.094666 | 7.4:+63109267 | MS.gene87121:CDS |
CATTTCTCTAATCCCTTTAC+AGG | 0.173221 | 7.4:-63109072 | None:intergenic |
TGGTAACTTTATGAGGATTT+TGG | 0.244298 | 7.4:-63108481 | None:intergenic |
TTTGGGTGATGAAAGATTAT+TGG | 0.255893 | 7.4:+63109103 | MS.gene87121:CDS |
TAGAGAAATGGTTTGATGTT+TGG | 0.304726 | 7.4:+63109085 | MS.gene87121:CDS |
ATGGGAGTAATAGGTTTCTT+TGG | 0.307329 | 7.4:+63109196 | MS.gene87121:CDS |
AATAAGAGCTGCTAGATATA+TGG | 0.316809 | 7.4:+63109302 | MS.gene87121:CDS |
GAATTAGAATGCTCAATCTT+TGG | 0.332900 | 7.4:-63108982 | None:intergenic |
AGAGAAATGGTTTGATGTTT+GGG | 0.342077 | 7.4:+63109086 | MS.gene87121:CDS |
CAATTGCTGGTAACTTTATG+AGG | 0.343221 | 7.4:-63108488 | None:intergenic |
ACATGGTTGATGAACGGTTT+AGG | 0.361566 | 7.4:+63108947 | MS.gene87121:CDS |
GTCATTGTTTATCCTGTAAA+GGG | 0.361651 | 7.4:+63109060 | MS.gene87121:CDS |
CAGTGATTTATAAGCTTGTT+GGG | 0.370830 | 7.4:+63109169 | MS.gene87121:CDS |
CCAGTGATTTATAAGCTTGT+TGG | 0.381944 | 7.4:+63109168 | MS.gene87121:CDS |
GCAAATCCATTTGCAAATCA+TGG | 0.393739 | 7.4:+63108523 | MS.gene87121:CDS |
TGGAAATATAAGATATCTTC+AGG | 0.405673 | 7.4:+63109260 | MS.gene87121:CDS |
TTGGGTGATGAAAGATTATT+GGG | 0.410457 | 7.4:+63109104 | MS.gene87121:CDS |
CTGTAAAGGGATTAGAGAAA+TGG | 0.411920 | 7.4:+63109073 | MS.gene87121:CDS |
ATGAAAGATTATTGGGATGA+AGG | 0.412972 | 7.4:+63109111 | MS.gene87121:CDS |
TGTCATTGTTTATCCTGTAA+AGG | 0.431563 | 7.4:+63109059 | MS.gene87121:CDS |
ATTATTGGGATGAAGGGTCT+TGG | 0.438909 | 7.4:+63109118 | MS.gene87121:CDS |
TGGATCAAGTTATATAGTAT+TGG | 0.438963 | 7.4:+63109138 | MS.gene87121:CDS |
TGAGAAATTGTTGTCATTGG+TGG | 0.444567 | 7.4:+63108881 | MS.gene87121:CDS |
TTGTGAGAAATTGTTGTCAT+TGG | 0.448499 | 7.4:+63108878 | MS.gene87121:CDS |
GAGAAATTGTTGTCATTGGT+GGG | 0.458222 | 7.4:+63108882 | MS.gene87121:CDS |
AGCTAACCATGATTTGCAAA+TGG | 0.467521 | 7.4:-63108529 | None:intergenic |
TTGGTGTTGTATGAAGTTGA+TGG | 0.475663 | 7.4:+63109237 | MS.gene87121:CDS |
GAAAGATAGCAATGAGAGGT+TGG | 0.477079 | 7.4:+63109218 | MS.gene87121:CDS |
ATACTATCAGATTCATCAAA+AGG | 0.487770 | 7.4:-63109033 | None:intergenic |
GAAGAACCCCAAATATCAAA+AGG | 0.492126 | 7.4:-63108841 | None:intergenic |
ATTGAGCATTCTAATTCCTC+AGG | 0.497942 | 7.4:+63108988 | MS.gene87121:CDS |
TTTGATGAATCTGATAGTAT+TGG | 0.502831 | 7.4:+63109036 | MS.gene87121:CDS |
AGCTTATAAATCACTGGCAC+AGG | 0.536304 | 7.4:-63109162 | None:intergenic |
TGAAAGATTATTGGGATGAA+GGG | 0.540379 | 7.4:+63109112 | MS.gene87121:CDS |
CCAACAAGCTTATAAATCAC+TGG | 0.548782 | 7.4:-63109168 | None:intergenic |
CTTCAAAGAGGAAATGAAAG+TGG | 0.549958 | 7.4:+63109339 | MS.gene87121:CDS |
AGAAATTGTTGTCATTGGTG+GGG | 0.553459 | 7.4:+63108883 | MS.gene87121:CDS |
CCCCAAATATCAAAAGGAAG+AGG | 0.561584 | 7.4:-63108835 | None:intergenic |
CATTTGACATGGTTGATGAA+CGG | 0.564625 | 7.4:+63108941 | MS.gene87121:CDS |
GTGTTGTATGAAGTTGATGG+TGG | 0.574427 | 7.4:+63109240 | MS.gene87121:CDS |
AGTCTTGTTTCACTTCAAAG+AGG | 0.582727 | 7.4:+63109327 | MS.gene87121:CDS |
TTTGGAAAGATAGCAATGAG+AGG | 0.639164 | 7.4:+63109214 | MS.gene87121:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAAACTATATAACTCA+AGG | - | chr7.4:63108780-63108799 | None:intergenic | 15.0% |
!! | TAGTAATTAGTAATAAATTG+AGG | - | chr7.4:63108567-63108586 | None:intergenic | 15.0% |
!!! | ATAGTTTTAATTCAAATTCT+TGG | + | chr7.4:63108788-63108807 | MS.gene87121:intron | 15.0% |
!! | AAATATTGGACTGAAATAAT+GGG | + | chr7.4:63108753-63108772 | MS.gene87121:intron | 20.0% |
!! | TAAATATTGGACTGAAATAA+TGG | + | chr7.4:63108752-63108771 | MS.gene87121:intron | 20.0% |
!! | TTATTTCAGTCCAATATTTA+TGG | - | chr7.4:63108752-63108771 | None:intergenic | 20.0% |
!!! | AGAAGAAATAATATGCTTTT+TGG | - | chr7.4:63108694-63108713 | None:intergenic | 20.0% |
!!! | GAAGAAATAATATGCTTTTT+GGG | - | chr7.4:63108693-63108712 | None:intergenic | 20.0% |
! | ACAATTCTGACCATAAATAT+TGG | + | chr7.4:63108739-63108758 | MS.gene87121:intron | 25.0% |
! | ATACTATCAGATTCATCAAA+AGG | - | chr7.4:63109036-63109055 | None:intergenic | 25.0% |
! | TGGAAATATAAGATATCTTC+AGG | + | chr7.4:63109260-63109279 | MS.gene87121:CDS | 25.0% |
! | TGGATCAAGTTATATAGTAT+TGG | + | chr7.4:63109138-63109157 | MS.gene87121:CDS | 25.0% |
! | TTTGATGAATCTGATAGTAT+TGG | + | chr7.4:63109036-63109055 | MS.gene87121:CDS | 25.0% |
!! | ATTTTGGATACTAAATCTTG+TGG | - | chr7.4:63108468-63108487 | None:intergenic | 25.0% |
!! | TCAATGTTTTTCTTGTAGTT+TGG | + | chr7.4:63109365-63109384 | MS.gene87121:CDS | 25.0% |
!!! | GGTTTTATTGATGGTAATAT+AGG | + | chr7.4:63108904-63108923 | MS.gene87121:CDS | 25.0% |
!!! | GTTTTAATTCAAATTCTTGG+AGG | + | chr7.4:63108791-63108810 | MS.gene87121:intron | 25.0% |
AATAAGAGCTGCTAGATATA+TGG | + | chr7.4:63109302-63109321 | MS.gene87121:CDS | 30.0% | |
AGAGAAATGGTTTGATGTTT+GGG | + | chr7.4:63109086-63109105 | MS.gene87121:CDS | 30.0% | |
ATGAAAGATTATTGGGATGA+AGG | + | chr7.4:63109111-63109130 | MS.gene87121:CDS | 30.0% | |
CAGAATTGTATTCATAAGGT+GGG | - | chr7.4:63108728-63108747 | None:intergenic | 30.0% | |
CTTACATTTCACATCTTTCT+TGG | + | chr7.4:63108655-63108674 | MS.gene87121:intron | 30.0% | |
GAATTAGAATGCTCAATCTT+TGG | - | chr7.4:63108985-63109004 | None:intergenic | 30.0% | |
GTCATTGTTTATCCTGTAAA+GGG | + | chr7.4:63109060-63109079 | MS.gene87121:CDS | 30.0% | |
TAGAGAAATGGTTTGATGTT+TGG | + | chr7.4:63109085-63109104 | MS.gene87121:CDS | 30.0% | |
TCAGAATTGTATTCATAAGG+TGG | - | chr7.4:63108729-63108748 | None:intergenic | 30.0% | |
TGAAAGATTATTGGGATGAA+GGG | + | chr7.4:63109112-63109131 | MS.gene87121:CDS | 30.0% | |
TGACTAAAAGATGTTCTTGT+TGG | - | chr7.4:63108605-63108624 | None:intergenic | 30.0% | |
TGGTCAGAATTGTATTCATA+AGG | - | chr7.4:63108732-63108751 | None:intergenic | 30.0% | |
TGTCATTGTTTATCCTGTAA+AGG | + | chr7.4:63109059-63109078 | MS.gene87121:CDS | 30.0% | |
TTGGGTGATGAAAGATTATT+GGG | + | chr7.4:63109104-63109123 | MS.gene87121:CDS | 30.0% | |
TTGTGAGAAATTGTTGTCAT+TGG | + | chr7.4:63108878-63108897 | MS.gene87121:CDS | 30.0% | |
TTTGGGTGATGAAAGATTAT+TGG | + | chr7.4:63109103-63109122 | MS.gene87121:CDS | 30.0% | |
! | ACCTCTTCCTTTTGATATTT+GGG | + | chr7.4:63108834-63108853 | MS.gene87121:CDS | 30.0% |
! | ATAAGATATCTTCAGGTTTC+TGG | + | chr7.4:63109267-63109286 | MS.gene87121:CDS | 30.0% |
! | CAGTGATTTATAAGCTTGTT+GGG | + | chr7.4:63109169-63109188 | MS.gene87121:CDS | 30.0% |
! | TACCTCTTCCTTTTGATATT+TGG | + | chr7.4:63108833-63108852 | MS.gene87121:CDS | 30.0% |
! | TGGTAACTTTATGAGGATTT+TGG | - | chr7.4:63108484-63108503 | None:intergenic | 30.0% |
!! | CATTTTGATAACTCAATTGC+TGG | - | chr7.4:63108504-63108523 | None:intergenic | 30.0% |
!!! | ATAAGCTTGTTGGGTTTTAT+GGG | + | chr7.4:63109178-63109197 | MS.gene87121:CDS | 30.0% |
!!! | TATAAGCTTGTTGGGTTTTA+TGG | + | chr7.4:63109177-63109196 | MS.gene87121:CDS | 30.0% |
!!! | TGTTGTTTTAGCATTTGACA+TGG | + | chr7.4:63108930-63108949 | MS.gene87121:CDS | 30.0% |
!!! | TGTTTTAAAACATTCACCTG+AGG | - | chr7.4:63109007-63109026 | None:intergenic | 30.0% |
AGAAATTGTTGTCATTGGTG+GGG | + | chr7.4:63108883-63108902 | MS.gene87121:CDS | 35.0% | |
ATGGGAGTAATAGGTTTCTT+TGG | + | chr7.4:63109196-63109215 | MS.gene87121:CDS | 35.0% | |
ATTGAGCATTCTAATTCCTC+AGG | + | chr7.4:63108988-63109007 | MS.gene87121:CDS | 35.0% | |
CAATTGCTGGTAACTTTATG+AGG | - | chr7.4:63108491-63108510 | None:intergenic | 35.0% | |
CATTTCTCTAATCCCTTTAC+AGG | - | chr7.4:63109075-63109094 | None:intergenic | 35.0% | |
CCAACAAGCTTATAAATCAC+TGG | - | chr7.4:63109171-63109190 | None:intergenic | 35.0% | |
CCAGTGATTTATAAGCTTGT+TGG | + | chr7.4:63109168-63109187 | MS.gene87121:CDS | 35.0% | |
CTGTAAAGGGATTAGAGAAA+TGG | + | chr7.4:63109073-63109092 | MS.gene87121:CDS | 35.0% | |
CTTCAAAGAGGAAATGAAAG+TGG | + | chr7.4:63109339-63109358 | MS.gene87121:CDS | 35.0% | |
GAAGAACCCCAAATATCAAA+AGG | - | chr7.4:63108844-63108863 | None:intergenic | 35.0% | |
GAGAAATTGTTGTCATTGGT+GGG | + | chr7.4:63108882-63108901 | MS.gene87121:CDS | 35.0% | |
GCAAATCCATTTGCAAATCA+TGG | + | chr7.4:63108523-63108542 | MS.gene87121:CDS | 35.0% | |
TGAGAAATTGTTGTCATTGG+TGG | + | chr7.4:63108881-63108900 | MS.gene87121:CDS | 35.0% | |
TTTGGAAAGATAGCAATGAG+AGG | + | chr7.4:63109214-63109233 | MS.gene87121:CDS | 35.0% | |
! | AGCTAACCATGATTTGCAAA+TGG | - | chr7.4:63108532-63108551 | None:intergenic | 35.0% |
! | ATTCGTAGACCTTTTCTTTG+TGG | + | chr7.4:63108624-63108643 | MS.gene87121:intron | 35.0% |
! | CCTCTTCCTTTTGATATTTG+GGG | + | chr7.4:63108835-63108854 | MS.gene87121:CDS | 35.0% |
!! | AGTCTTGTTTCACTTCAAAG+AGG | + | chr7.4:63109327-63109346 | MS.gene87121:CDS | 35.0% |
!! | CATTTGACATGGTTGATGAA+CGG | + | chr7.4:63108941-63108960 | MS.gene87121:CDS | 35.0% |
!! | TTGGGTTTTATGGGAGTAAT+AGG | + | chr7.4:63109187-63109206 | MS.gene87121:CDS | 35.0% |
!! | TTGGTGTTGTATGAAGTTGA+TGG | + | chr7.4:63109237-63109256 | MS.gene87121:CDS | 35.0% |
!!! | GTTTTGAGACCACAAAGAAA+AGG | - | chr7.4:63108636-63108655 | None:intergenic | 35.0% |
AGCTTATAAATCACTGGCAC+AGG | - | chr7.4:63109165-63109184 | None:intergenic | 40.0% | |
ATTATTGGGATGAAGGGTCT+TGG | + | chr7.4:63109118-63109137 | MS.gene87121:CDS | 40.0% | |
CCCCAAATATCAAAAGGAAG+AGG | - | chr7.4:63108838-63108857 | None:intergenic | 40.0% | |
GAAAGATAGCAATGAGAGGT+TGG | + | chr7.4:63109218-63109237 | MS.gene87121:CDS | 40.0% | |
! | ATGATCCTCTTTTGAACCTG+GGG | + | chr7.4:63109391-63109410 | MS.gene87121:CDS | 40.0% |
! | CATGATCCTCTTTTGAACCT+GGG | + | chr7.4:63109390-63109409 | MS.gene87121:CDS | 40.0% |
! | TCATGATCCTCTTTTGAACC+TGG | + | chr7.4:63109389-63109408 | MS.gene87121:CDS | 40.0% |
!! | ACATGGTTGATGAACGGTTT+AGG | + | chr7.4:63108947-63108966 | MS.gene87121:CDS | 40.0% |
!! | GTGTTGTATGAAGTTGATGG+TGG | + | chr7.4:63109240-63109259 | MS.gene87121:CDS | 40.0% |
!!! | CATTGGTGGGGTTTTATTGA+TGG | + | chr7.4:63108895-63108914 | MS.gene87121:CDS | 40.0% |
! | TGATCCTCTTTTGAACCTGG+GGG | + | chr7.4:63109392-63109411 | MS.gene87121:CDS | 45.0% |
TACTCCCCCAGGTTCAAAAG+AGG | - | chr7.4:63109399-63109418 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 63108453 | 63109419 | 63108453 | ID=MS.gene87121 |
chr7.4 | mRNA | 63108453 | 63109419 | 63108453 | ID=MS.gene87121.t1;Parent=MS.gene87121 |
chr7.4 | exon | 63108453 | 63108544 | 63108453 | ID=MS.gene87121.t1.exon1;Parent=MS.gene87121.t1 |
chr7.4 | CDS | 63108453 | 63108544 | 63108453 | ID=cds.MS.gene87121.t1;Parent=MS.gene87121.t1 |
chr7.4 | exon | 63108792 | 63109419 | 63108792 | ID=MS.gene87121.t1.exon2;Parent=MS.gene87121.t1 |
chr7.4 | CDS | 63108792 | 63109419 | 63108792 | ID=cds.MS.gene87121.t1;Parent=MS.gene87121.t1 |
Gene Sequence |
Protein sequence |