Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87407.t1 | RHN42137.1 | 96.5 | 141 | 5 | 0 | 276 | 416 | 286 | 426 | 2.80E-77 | 299.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87407.t1 | G7LEV6 | 96.5 | 141 | 5 | 0 | 276 | 416 | 553 | 693 | 2.0e-77 | 299.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene87407 | 0.806427 | 8.27E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene87407 | 0.834712 | 2.56E-56 | -1.69E-46 |
| MS.gene049343 | MS.gene87407 | 0.816643 | 4.97E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene87407 | 0.825296 | 5.06E-54 | -1.69E-46 |
| MS.gene050156 | MS.gene87407 | 0.80711 | 5.93E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene87407 | 0.81466 | 1.38E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene87407 | 0.811183 | 7.95E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene87407 | 0.817479 | 3.23E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene87407 | 0.807995 | 3.85E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene87407 | 0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene87407 | 0.826641 | 2.43E-54 | -1.69E-46 |
| MS.gene052519 | MS.gene87407 | 0.861163 | 1.24E-63 | -1.69E-46 |
| MS.gene052611 | MS.gene87407 | 0.841496 | 4.59E-58 | -1.69E-46 |
| MS.gene052863 | MS.gene87407 | 0.883447 | 4.45E-71 | -1.69E-46 |
| MS.gene052896 | MS.gene87407 | 0.837832 | 4.12E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene87407 | 0.863957 | 1.72E-64 | -1.69E-46 |
| MS.gene053146 | MS.gene87407 | 0.821676 | 3.56E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene87407 | 0.8128 | 3.53E-51 | -1.69E-46 |
| MS.gene053900 | MS.gene87407 | 0.814549 | 1.46E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene87407 | 0.809229 | 2.10E-50 | -1.69E-46 |
| MS.gene054582 | MS.gene87407 | 0.830877 | 2.29E-55 | -1.69E-46 |
| MS.gene05458 | MS.gene87407 | 0.802758 | 4.82E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene87407 | 0.817558 | 3.10E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene87407 | 0.819904 | 9.09E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene87407 | 0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene87407 | 0.839947 | 1.17E-57 | -1.69E-46 |
| MS.gene056545 | MS.gene87407 | 0.801195 | 1.01E-48 | -1.69E-46 |
| MS.gene056595 | MS.gene87407 | 0.819744 | 9.89E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene87407 | 0.805742 | 1.15E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene87407 | 0.821661 | 3.59E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene87407 | 0.833641 | 4.74E-56 | -1.69E-46 |
| MS.gene059151 | MS.gene87407 | 0.834718 | 2.55E-56 | -1.69E-46 |
| MS.gene059842 | MS.gene87407 | 0.846529 | 2.05E-59 | -1.69E-46 |
| MS.gene060322 | MS.gene87407 | 0.81409 | 1.84E-51 | -1.69E-46 |
| MS.gene060803 | MS.gene87407 | 0.802233 | 6.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87407.t1 | MTR_8g077990 | 96.454 | 141 | 5 | 0 | 276 | 416 | 553 | 693 | 8.63e-96 | 301 |
| MS.gene87407.t1 | MTR_8g077990 | 96.429 | 140 | 5 | 0 | 131 | 270 | 553 | 692 | 1.36e-94 | 298 |
| MS.gene87407.t1 | MTR_8g077990 | 96.800 | 125 | 4 | 0 | 1 | 125 | 568 | 692 | 2.54e-84 | 271 |
| MS.gene87407.t1 | MTR_1g076600 | 95.050 | 101 | 5 | 0 | 316 | 416 | 55 | 155 | 2.90e-65 | 206 |
| MS.gene87407.t1 | MTR_1g076600 | 95.000 | 100 | 5 | 0 | 26 | 125 | 55 | 154 | 4.10e-64 | 203 |
| MS.gene87407.t1 | MTR_1g076600 | 95.000 | 100 | 5 | 0 | 171 | 270 | 55 | 154 | 4.10e-64 | 203 |
| MS.gene87407.t1 | MTR_7g029435 | 93.478 | 92 | 6 | 0 | 325 | 416 | 1 | 92 | 7.15e-58 | 184 |
| MS.gene87407.t1 | MTR_7g029435 | 93.407 | 91 | 6 | 0 | 35 | 125 | 1 | 91 | 8.55e-57 | 182 |
| MS.gene87407.t1 | MTR_7g029435 | 93.407 | 91 | 6 | 0 | 180 | 270 | 1 | 91 | 8.55e-57 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87407.t1 | AT5G41020 | 53.595 | 153 | 69 | 1 | 116 | 268 | 433 | 583 | 6.16e-49 | 175 |
| MS.gene87407.t1 | AT5G41020 | 53.595 | 153 | 69 | 1 | 261 | 413 | 433 | 583 | 6.16e-49 | 175 |
| MS.gene87407.t1 | AT5G41020 | 58.537 | 123 | 51 | 0 | 1 | 123 | 461 | 583 | 2.01e-45 | 166 |
Find 107 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAATGATCCACCATATT+GGG | 0.286872 | 8.3:+26112593 | MS.gene87407:CDS |
| AACAAATGATCCACCATATT+GGG | 0.286872 | 8.3:+26113464 | MS.gene87407:CDS |
| AACAAATGATCCACCATATT+GGG | 0.286872 | 8.3:+26114335 | MS.gene87407:CDS |
| GAACAAATGATCCACCATAT+TGG | 0.329038 | 8.3:+26112592 | MS.gene87407:CDS |
| GAACAAATGATCCACCATAT+TGG | 0.329038 | 8.3:+26113463 | MS.gene87407:CDS |
| GAACAAATGATCCACCATAT+TGG | 0.329038 | 8.3:+26114334 | MS.gene87407:CDS |
| TCTCTATCTTTCAACAAGTT+GGG | 0.365789 | 8.3:-26112673 | None:intergenic |
| TCTCTATCTTTCAACAAGTT+GGG | 0.365789 | 8.3:-26113544 | None:intergenic |
| TCTCTATCTTTCAACAAGTT+GGG | 0.365789 | 8.3:-26114415 | None:intergenic |
| CTCTCTATCTTTCAACAAGT+TGG | 0.365952 | 8.3:-26112674 | None:intergenic |
| CTCTCTATCTTTCAACAAGT+TGG | 0.365952 | 8.3:-26113545 | None:intergenic |
| CTCTCTATCTTTCAACAAGT+TGG | 0.365952 | 8.3:-26114416 | None:intergenic |
| GATAGACGCTTTATATGCTT+TGG | 0.375237 | 8.3:+26112492 | MS.gene87407:CDS |
| GATAGACGCTTTATATGCTT+TGG | 0.375237 | 8.3:+26113363 | MS.gene87407:CDS |
| GATAGACGCTTTATATGCTT+TGG | 0.375237 | 8.3:+26114234 | MS.gene87407:CDS |
| TGGCGGCATGCTCCCCAATA+TGG | 0.396320 | 8.3:-26112606 | None:intergenic |
| TGGCGGCATGCTCCCCAATA+TGG | 0.396320 | 8.3:-26113477 | None:intergenic |
| TGGCGGCATGCTCCCCAATA+TGG | 0.396320 | 8.3:-26114348 | None:intergenic |
| GTTGCGAGATAATATTTGTT+GGG | 0.434220 | 8.3:+26112348 | MS.gene87407:CDS |
| GTTGCGAGATAATATTTGTT+GGG | 0.434220 | 8.3:+26113219 | MS.gene87407:CDS |
| GTTGCGAGATAATATTTGTT+GGG | 0.434220 | 8.3:+26114090 | MS.gene87407:CDS |
| GCTGCATGGAGGAGGTAGAC+TGG | 0.446516 | 8.3:+26112521 | MS.gene87407:CDS |
| GCTGCATGGAGGAGGTAGAC+TGG | 0.446516 | 8.3:+26113392 | MS.gene87407:CDS |
| GCTGCATGGAGGAGGTAGAC+TGG | 0.446516 | 8.3:+26114263 | MS.gene87407:CDS |
| CGCCAAGTCATTCATTGAGC+AGG | 0.451714 | 8.3:+26112624 | MS.gene87407:CDS |
| CGCCAAGTCATTCATTGAGC+AGG | 0.451714 | 8.3:+26113495 | MS.gene87407:CDS |
| CGCCAAGTCATTCATTGAGC+AGG | 0.451714 | 8.3:+26114366 | MS.gene87407:CDS |
| CATTGGTTGCTAGTGGTGAT+TGG | 0.452021 | 8.3:+26112446 | MS.gene87407:CDS |
| CATTGGTTGCTAGTGGTGAT+TGG | 0.452021 | 8.3:+26113317 | MS.gene87407:CDS |
| CATTGGTTGCTAGTGGTGAT+TGG | 0.452021 | 8.3:+26114188 | MS.gene87407:CDS |
| AATATTTGTTGGGAGGCAAT+TGG | 0.463198 | 8.3:+26112358 | MS.gene87407:CDS |
| AATATTTGTTGGGAGGCAAT+TGG | 0.463198 | 8.3:+26113229 | MS.gene87407:CDS |
| AATATTTGTTGGGAGGCAAT+TGG | 0.463198 | 8.3:+26114100 | MS.gene87407:CDS |
| TGCTTTGGATGCTTGCTGCA+TGG | 0.479442 | 8.3:+26112507 | MS.gene87407:CDS |
| TGCTTTGGATGCTTGCTGCA+TGG | 0.479442 | 8.3:+26113378 | MS.gene87407:CDS |
| TGCTTTGGATGCTTGCTGCA+TGG | 0.479442 | 8.3:+26114249 | MS.gene87407:CDS |
| TGTTGCGAGATAATATTTGT+TGG | 0.489321 | 8.3:+26112347 | MS.gene87407:CDS |
| TGTTGCGAGATAATATTTGT+TGG | 0.489321 | 8.3:+26113218 | MS.gene87407:CDS |
| TGTTGCGAGATAATATTTGT+TGG | 0.489321 | 8.3:+26114089 | MS.gene87407:CDS |
| GGATGCTTGCTGCATGGAGG+AGG | 0.492182 | 8.3:+26112513 | MS.gene87407:CDS |
| GGATGCTTGCTGCATGGAGG+AGG | 0.492182 | 8.3:+26113384 | MS.gene87407:CDS |
| GGATGCTTGCTGCATGGAGG+AGG | 0.492182 | 8.3:+26114255 | MS.gene87407:CDS |
| CTCTATCTTTCAACAAGTTG+GGG | 0.504361 | 8.3:-26112672 | None:intergenic |
| CTCTATCTTTCAACAAGTTG+GGG | 0.504361 | 8.3:-26113543 | None:intergenic |
| CTCTATCTTTCAACAAGTTG+GGG | 0.504361 | 8.3:-26114414 | None:intergenic |
| CTGCTCAATGAATGACTTGG+CGG | 0.516982 | 8.3:-26112623 | None:intergenic |
| CTGCTCAATGAATGACTTGG+CGG | 0.516982 | 8.3:-26113494 | None:intergenic |
| CTGCTCAATGAATGACTTGG+CGG | 0.516982 | 8.3:-26114365 | None:intergenic |
| AATCTACTTGAGCATAGGTC+TGG | 0.523977 | 8.3:+26112547 | MS.gene87407:CDS |
| AATCTACTTGAGCATAGGTC+TGG | 0.523977 | 8.3:+26113418 | MS.gene87407:CDS |
| AATCTACTTGAGCATAGGTC+TGG | 0.523977 | 8.3:+26114289 | MS.gene87407:CDS |
| CTGCATGGAGGAGGTAGACT+GGG | 0.526890 | 8.3:+26112522 | MS.gene87407:CDS |
| CTGCATGGAGGAGGTAGACT+GGG | 0.526890 | 8.3:+26113393 | MS.gene87407:CDS |
| CTGCATGGAGGAGGTAGACT+GGG | 0.526890 | 8.3:+26114264 | MS.gene87407:CDS |
| GGAGGCAATTGGTCACAAGT+TGG | 0.536501 | 8.3:+26112369 | MS.gene87407:CDS |
| GGAGGCAATTGGTCACAAGT+TGG | 0.536501 | 8.3:+26113240 | MS.gene87407:CDS |
| GGAGGCAATTGGTCACAAGT+TGG | 0.536501 | 8.3:+26114111 | MS.gene87407:CDS |
| ATAGGTCTGGTGATGTGTGC+AGG | 0.541652 | 8.3:+26112560 | MS.gene87407:CDS |
| ATAGGTCTGGTGATGTGTGC+AGG | 0.541652 | 8.3:+26113431 | MS.gene87407:CDS |
| ATAGGTCTGGTGATGTGTGC+AGG | 0.541652 | 8.3:+26114302 | MS.gene87407:CDS |
| AATCACAGGTTTGTTGTCAA+AGG | 0.550299 | 8.3:-26112698 | None:intergenic |
| AATCACAGGTTTGTTGTCAA+AGG | 0.550299 | 8.3:-26113569 | None:intergenic |
| AATCACAGGTTTGTTGTCAA+AGG | 0.550299 | 8.3:-26114440 | None:intergenic |
| TGAGCAATTAACATCAACAT+TGG | 0.568371 | 8.3:+26112429 | MS.gene87407:CDS |
| TGAGCAATTAACATCAACAT+TGG | 0.568371 | 8.3:+26113300 | MS.gene87407:CDS |
| TGAGCAATTAACATCAACAT+TGG | 0.568371 | 8.3:+26114171 | MS.gene87407:CDS |
| TAGAAACCTCAACAAATCAC+AGG | 0.579568 | 8.3:-26112712 | None:intergenic |
| TAGAAACCTCAACAAATCAC+AGG | 0.579568 | 8.3:-26113583 | None:intergenic |
| TAGAAACCTCAACAAATCAC+AGG | 0.579568 | 8.3:-26114454 | None:intergenic |
| AAAAGGAATATCTGCTTGAG+AGG | 0.580459 | 8.3:+26113161 | MS.gene87407:CDS |
| AAAAGGAATATCTGCTTGAG+AGG | 0.580459 | 8.3:+26114032 | MS.gene87407:CDS |
| ACATCAACATTGGTTGCTAG+TGG | 0.583463 | 8.3:+26112439 | MS.gene87407:CDS |
| ACATCAACATTGGTTGCTAG+TGG | 0.583463 | 8.3:+26113310 | MS.gene87407:CDS |
| ACATCAACATTGGTTGCTAG+TGG | 0.583463 | 8.3:+26114181 | MS.gene87407:CDS |
| AACAAACCTGTGATTTGTTG+AGG | 0.586181 | 8.3:+26114448 | MS.gene87407:CDS |
| GCGAGATAATATTTGTTGGG+AGG | 0.587211 | 8.3:+26112351 | MS.gene87407:CDS |
| GCGAGATAATATTTGTTGGG+AGG | 0.587211 | 8.3:+26113222 | MS.gene87407:CDS |
| GCGAGATAATATTTGTTGGG+AGG | 0.587211 | 8.3:+26114093 | MS.gene87407:CDS |
| CATATAAAGCGTCTATCAAG+CGG | 0.589919 | 8.3:-26112486 | None:intergenic |
| CATATAAAGCGTCTATCAAG+CGG | 0.589919 | 8.3:-26113357 | None:intergenic |
| CATATAAAGCGTCTATCAAG+CGG | 0.589919 | 8.3:-26114228 | None:intergenic |
| CGGCATGCTCCCCAATATGG+TGG | 0.593209 | 8.3:-26112603 | None:intergenic |
| CGGCATGCTCCCCAATATGG+TGG | 0.593209 | 8.3:-26113474 | None:intergenic |
| CGGCATGCTCCCCAATATGG+TGG | 0.593209 | 8.3:-26114345 | None:intergenic |
| CAACTTGTTGAAAGATAGAG+AGG | 0.613256 | 8.3:+26112675 | MS.gene87407:CDS |
| CAACTTGTTGAAAGATAGAG+AGG | 0.613256 | 8.3:+26113546 | MS.gene87407:CDS |
| CAACTTGTTGAAAGATAGAG+AGG | 0.613256 | 8.3:+26114417 | MS.gene87407:CDS |
| AAAGGAATATCTGCTTGAGA+GGG | 0.613320 | 8.3:+26113162 | MS.gene87407:CDS |
| AAAGGAATATCTGCTTGAGA+GGG | 0.613320 | 8.3:+26114033 | MS.gene87407:CDS |
| GGGACAATCTACTTGAGCAT+AGG | 0.618965 | 8.3:+26112542 | MS.gene87407:CDS |
| GGGACAATCTACTTGAGCAT+AGG | 0.618965 | 8.3:+26113413 | MS.gene87407:CDS |
| GGGACAATCTACTTGAGCAT+AGG | 0.618965 | 8.3:+26114284 | MS.gene87407:CDS |
| ACAAATGATCCACCATATTG+GGG | 0.622830 | 8.3:+26112594 | MS.gene87407:CDS |
| ACAAATGATCCACCATATTG+GGG | 0.622830 | 8.3:+26113465 | MS.gene87407:CDS |
| ACAAATGATCCACCATATTG+GGG | 0.622830 | 8.3:+26114336 | MS.gene87407:CDS |
| AACCTGCTCAATGAATGACT+TGG | 0.625939 | 8.3:-26112626 | None:intergenic |
| AACCTGCTCAATGAATGACT+TGG | 0.625939 | 8.3:-26113497 | None:intergenic |
| AACCTGCTCAATGAATGACT+TGG | 0.625939 | 8.3:-26114368 | None:intergenic |
| GTGATGTGTGCAGGAAACGA+TGG | 0.634053 | 8.3:+26112569 | MS.gene87407:CDS |
| GTGATGTGTGCAGGAAACGA+TGG | 0.634053 | 8.3:+26113440 | MS.gene87407:CDS |
| GTGATGTGTGCAGGAAACGA+TGG | 0.634053 | 8.3:+26114311 | MS.gene87407:CDS |
| TTTGGATGCTTGCTGCATGG+AGG | 0.643384 | 8.3:+26112510 | MS.gene87407:CDS |
| TTTGGATGCTTGCTGCATGG+AGG | 0.643384 | 8.3:+26113381 | MS.gene87407:CDS |
| TTTGGATGCTTGCTGCATGG+AGG | 0.643384 | 8.3:+26114252 | MS.gene87407:CDS |
| TGATGTGTGCAGGAAACGAT+GGG | 0.644218 | 8.3:+26112570 | MS.gene87407:CDS |
| TGATGTGTGCAGGAAACGAT+GGG | 0.644218 | 8.3:+26113441 | MS.gene87407:CDS |
| TGATGTGTGCAGGAAACGAT+GGG | 0.644218 | 8.3:+26114312 | MS.gene87407:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTCTAACAAAAAATTAT+CGG | - | chr8.3:26113026-26113045 | None:intergenic | 15.0% |
| !!! | AATCTTTTATGCTTATTTAT+TGG | + | chr8.3:26112992-26113011 | MS.gene87407:intron | 15.0% |
| !!! | ATAATTTTTTGTTAGAATGA+TGG | + | chr8.3:26113026-26113045 | MS.gene87407:intron | 15.0% |
| !! | TAAATAGGAATAAAAGAACA+AGG | - | chr8.3:26112837-26112856 | None:intergenic | 20.0% |
| !! | TCTTGTTAGAAAAAATACAT+TGG | + | chr8.3:26113089-26113108 | MS.gene87407:intron | 20.0% |
| !!! | TCAAGTTTAACTTGTTAAAT+AGG | - | chr8.3:26112852-26112871 | None:intergenic | 20.0% |
| ! | AAGTTCACGATAGAATTATT+GGG | - | chr8.3:26112955-26112974 | None:intergenic | 25.0% |
| ! | CCTTATAAAAAATCACAACA+TGG | + | chr8.3:26114064-26114083 | MS.gene87407:CDS | 25.0% |
| !! | GAGAATTTTTACAGCAAAAA+AGG | + | chr8.3:26113144-26113163 | MS.gene87407:intron | 25.0% |
| !!! | CCATGTTGTGATTTTTTATA+AGG | - | chr8.3:26114067-26114086 | None:intergenic | 25.0% |
| AACAAATGATCCACCATATT+GGG | + | chr8.3:26112593-26112612 | MS.gene87407:CDS | 30.0% | |
| AGTATTATGCTATGATGAGT+AGG | + | chr8.3:26112784-26112803 | MS.gene87407:intron | 30.0% | |
| ATGTTGAGCATGTTCAAAAT+GGG | + | chr8.3:26113049-26113068 | MS.gene87407:intron | 30.0% | |
| ATTCTATCGTGAACTTCATT+TGG | + | chr8.3:26112959-26112978 | MS.gene87407:intron | 30.0% | |
| CATCATAGCATAATACTTTC+TGG | - | chr8.3:26112781-26112800 | None:intergenic | 30.0% | |
| CCTTATAAAAAATCACAGCA+TGG | + | chr8.3:26113193-26113212 | MS.gene87407:CDS | 30.0% | |
| GAAGTTCACGATAGAATTAT+TGG | - | chr8.3:26112956-26112975 | None:intergenic | 30.0% | |
| GTTGCGAGATAATATTTGTT+GGG | + | chr8.3:26112348-26112367 | MS.gene87407:CDS | 30.0% | |
| TCTCTATCTTTCAACAAGTT+GGG | - | chr8.3:26112676-26112695 | None:intergenic | 30.0% | |
| TGAGCAATTAACATCAACAT+TGG | + | chr8.3:26112429-26112448 | MS.gene87407:CDS | 30.0% | |
| TGTTGCGAGATAATATTTGT+TGG | + | chr8.3:26112347-26112366 | MS.gene87407:CDS | 30.0% | |
| !!! | CCATGCTGTGATTTTTTATA+AGG | - | chr8.3:26113196-26113215 | None:intergenic | 30.0% |
| AAAAGGAATATCTGCTTGAG+AGG | + | chr8.3:26113161-26113180 | MS.gene87407:CDS | 35.0% | |
| AAAGGAATATCTGCTTGAGA+GGG | + | chr8.3:26113162-26113181 | MS.gene87407:CDS | 35.0% | |
| ACAAATGATCCACCATATTG+GGG | + | chr8.3:26112594-26112613 | MS.gene87407:CDS | 35.0% | |
| AGCAAAACCATTTCATCCTA+TGG | - | chr8.3:26112755-26112774 | None:intergenic | 35.0% | |
| CCTATGGAAAACCAAGATAA+AGG | - | chr8.3:26112739-26112758 | None:intergenic | 35.0% | |
| CTCTATCTTTCAACAAGTTG+GGG | - | chr8.3:26112675-26112694 | None:intergenic | 35.0% | |
| CTCTCTATCTTTCAACAAGT+TGG | - | chr8.3:26112677-26112696 | None:intergenic | 35.0% | |
| GAACAAATGATCCACCATAT+TGG | + | chr8.3:26112592-26112611 | MS.gene87407:CDS | 35.0% | |
| GAATTATTGGGTCTAACAAC+AGG | - | chr8.3:26112943-26112962 | None:intergenic | 35.0% | |
| GAGGTTTCTAACCTTTATCT+TGG | + | chr8.3:26112725-26112744 | MS.gene87407:intron | 35.0% | |
| GATAGACGCTTTATATGCTT+TGG | + | chr8.3:26112492-26112511 | MS.gene87407:CDS | 35.0% | |
| GATGTTGAGCATGTTCAAAA+TGG | + | chr8.3:26113048-26113067 | MS.gene87407:intron | 35.0% | |
| TAGAAACCTCAACAAATCAC+AGG | - | chr8.3:26112715-26112734 | None:intergenic | 35.0% | |
| TTGATATTCGATATTCCTGC+TGG | + | chr8.3:26112905-26112924 | MS.gene87407:intron | 35.0% | |
| ! | AATATTTGTTGGGAGGCAAT+TGG | + | chr8.3:26112358-26112377 | MS.gene87407:CDS | 35.0% |
| ! | CATATAAAGCGTCTATCAAG+CGG | - | chr8.3:26112489-26112508 | None:intergenic | 35.0% |
| ! | TGGTTTTCCATAGGATGAAA+TGG | + | chr8.3:26112745-26112764 | MS.gene87407:intron | 35.0% |
| !! | AACAAACCTGTGATTTGTTG+AGG | + | chr8.3:26112706-26112725 | MS.gene87407:intron | 35.0% |
| !! | AATCACAGGTTTGTTGTCAA+AGG | - | chr8.3:26112701-26112720 | None:intergenic | 35.0% |
| !! | CAACTTGTTGAAAGATAGAG+AGG | + | chr8.3:26112675-26112694 | MS.gene87407:CDS | 35.0% |
| !! | CCTTTATCTTGGTTTTCCAT+AGG | + | chr8.3:26112736-26112755 | MS.gene87407:intron | 35.0% |
| !!! | ATTCCTGCTGGTTTTGTTTA+TGG | + | chr8.3:26112917-26112936 | MS.gene87407:intron | 35.0% |
| AACCTGCTCAATGAATGACT+TGG | - | chr8.3:26112629-26112648 | None:intergenic | 40.0% | |
| AATCTACTTGAGCATAGGTC+TGG | + | chr8.3:26112547-26112566 | MS.gene87407:CDS | 40.0% | |
| ! | ACATCAACATTGGTTGCTAG+TGG | + | chr8.3:26112439-26112458 | MS.gene87407:CDS | 40.0% |
| ! | GCGAGATAATATTTGTTGGG+AGG | + | chr8.3:26112351-26112370 | MS.gene87407:CDS | 40.0% |
| AGGCCATAAACAAAACCAGC+AGG | - | chr8.3:26112923-26112942 | None:intergenic | 45.0% | |
| GGGACAATCTACTTGAGCAT+AGG | + | chr8.3:26112542-26112561 | MS.gene87407:CDS | 45.0% | |
| TGATGTGTGCAGGAAACGAT+GGG | + | chr8.3:26112570-26112589 | MS.gene87407:CDS | 45.0% | |
| ! | CATTGGTTGCTAGTGGTGAT+TGG | + | chr8.3:26112446-26112465 | MS.gene87407:CDS | 45.0% |
| ! | CTGCTCAATGAATGACTTGG+CGG | - | chr8.3:26112626-26112645 | None:intergenic | 45.0% |
| ! | GTGCATTTTGCTGCAAGAAG+TGG | + | chr8.3:26112404-26112423 | MS.gene87407:CDS | 45.0% |
| CGCCAAGTCATTCATTGAGC+AGG | + | chr8.3:26112624-26112643 | MS.gene87407:CDS | 50.0% | |
| GGAGGCAATTGGTCACAAGT+TGG | + | chr8.3:26112369-26112388 | MS.gene87407:CDS | 50.0% | |
| GTGATGTGTGCAGGAAACGA+TGG | + | chr8.3:26112569-26112588 | MS.gene87407:CDS | 50.0% | |
| ! | ATAGGTCTGGTGATGTGTGC+AGG | + | chr8.3:26112560-26112579 | MS.gene87407:CDS | 50.0% |
| ! | TGCTTTGGATGCTTGCTGCA+TGG | + | chr8.3:26112507-26112526 | MS.gene87407:CDS | 50.0% |
| ! | TTTGGATGCTTGCTGCATGG+AGG | + | chr8.3:26112510-26112529 | MS.gene87407:CDS | 50.0% |
| CTGCATGGAGGAGGTAGACT+GGG | + | chr8.3:26112522-26112541 | MS.gene87407:CDS | 55.0% | |
| CGGCATGCTCCCCAATATGG+TGG | - | chr8.3:26112606-26112625 | None:intergenic | 60.0% | |
| GCTGCATGGAGGAGGTAGAC+TGG | + | chr8.3:26112521-26112540 | MS.gene87407:CDS | 60.0% | |
| TGGCGGCATGCTCCCCAATA+TGG | - | chr8.3:26112609-26112628 | None:intergenic | 60.0% | |
| ! | GGATGCTTGCTGCATGGAGG+AGG | + | chr8.3:26112513-26112532 | MS.gene87407:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 26112346 | 26114468 | 26112346 | ID=MS.gene87407 |
| chr8.3 | mRNA | 26112346 | 26114468 | 26112346 | ID=MS.gene87407.t1;Parent=MS.gene87407 |
| chr8.3 | exon | 26112346 | 26112721 | 26112346 | ID=MS.gene87407.t1.exon1;Parent=MS.gene87407.t1 |
| chr8.3 | CDS | 26112346 | 26112721 | 26112346 | ID=cds.MS.gene87407.t1;Parent=MS.gene87407.t1 |
| chr8.3 | exon | 26113158 | 26113592 | 26113158 | ID=MS.gene87407.t1.exon2;Parent=MS.gene87407.t1 |
| chr8.3 | CDS | 26113158 | 26113592 | 26113158 | ID=cds.MS.gene87407.t1;Parent=MS.gene87407.t1 |
| chr8.3 | exon | 26114029 | 26114468 | 26114029 | ID=MS.gene87407.t1.exon3;Parent=MS.gene87407.t1 |
| chr8.3 | CDS | 26114029 | 26114468 | 26114029 | ID=cds.MS.gene87407.t1;Parent=MS.gene87407.t1 |
| Gene Sequence |
| Protein sequence |
