AlfalfaGEDB | MS.gene87407

M. sativa cultivar XinJiangDaYe / MS.gene87407

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87407.t1	RHN42137.1	96.5	141	5	0	276	416	286	426	2.80E-77	299.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87407.t1	G7LEV6	96.5	141	5	0	276	416	553	693	2.0e-77	299.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene87407	0.806427	8.27E-50	-1.69E-46
MS.gene049159	MS.gene87407	0.834712	2.56E-56	-1.69E-46
MS.gene049343	MS.gene87407	0.816643	4.97E-52	-1.69E-46
MS.gene049850	MS.gene87407	0.825296	5.06E-54	-1.69E-46
MS.gene050156	MS.gene87407	0.80711	5.93E-50	-1.69E-46
MS.gene050689	MS.gene87407	0.81466	1.38E-51	-1.69E-46
MS.gene050815	MS.gene87407	0.811183	7.95E-51	-1.69E-46
MS.gene050844	MS.gene87407	0.817479	3.23E-52	-1.69E-46
MS.gene051247	MS.gene87407	0.807995	3.85E-50	-1.69E-46
MS.gene051328	MS.gene87407	0.802667	5.03E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87407.t1	MTR_8g077990	96.454	141	5	276	416	553	693	8.63e-96	301
MS.gene87407.t1	MTR_8g077990	96.429	140	5	131	270	553	692	1.36e-94	298
MS.gene87407.t1	MTR_8g077990	96.800	125	4	1	125	568	692	2.54e-84	271
MS.gene87407.t1	MTR_1g076600	95.050	101	5	316	416	55	155	2.90e-65	206
MS.gene87407.t1	MTR_1g076600	95.000	100	5	26	125	55	154	4.10e-64	203
MS.gene87407.t1	MTR_1g076600	95.000	100	5	171	270	55	154	4.10e-64	203
MS.gene87407.t1	MTR_7g029435	93.478	92	6	325	416	1	92	7.15e-58	184
MS.gene87407.t1	MTR_7g029435	93.407	91	6	35	125	1	91	8.55e-57	182
MS.gene87407.t1	MTR_7g029435	93.407	91	6	180	270	1	91	8.55e-57	182

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87407.t1	AT5G41020	53.595	153	69	1	116	268	433	583	6.16e-49	175
MS.gene87407.t1	AT5G41020	53.595	153	69	1	261	413	433	583	6.16e-49	175
MS.gene87407.t1	AT5G41020	58.537	123	51	0	1	123	461	583	2.01e-45	166

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Find 107 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAATATCTGCTTGAG+AGG	0.580459	8.3:+26113161	MS.gene87407:CDS
AAAAGGAATATCTGCTTGAG+AGG	0.580459	8.3:+26114032	MS.gene87407:CDS
AAAGGAATATCTGCTTGAGA+GGG	0.613320	8.3:+26113162	MS.gene87407:CDS
AAAGGAATATCTGCTTGAGA+GGG	0.613320	8.3:+26114033	MS.gene87407:CDS
AACAAACCTGTGATTTGTTG+AGG	0.586181	8.3:+26114448	MS.gene87407:CDS
AACAAATGATCCACCATATT+GGG	0.286872	8.3:+26112593	MS.gene87407:CDS
AACAAATGATCCACCATATT+GGG	0.286872	8.3:+26113464	MS.gene87407:CDS
AACAAATGATCCACCATATT+GGG	0.286872	8.3:+26114335	MS.gene87407:CDS
AACCTGCTCAATGAATGACT+TGG	0.625939	8.3:-26112626	None:intergenic
AACCTGCTCAATGAATGACT+TGG	0.625939	8.3:-26113497	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAATGATCCACCATATT+GGG	+	chr8.3:26112593-26112612	MS.gene87407:CDS	30.0%
AGTATTATGCTATGATGAGT+AGG	+	chr8.3:26112784-26112803	MS.gene87407:intron	30.0%
ATGTTGAGCATGTTCAAAAT+GGG	+	chr8.3:26113049-26113068	MS.gene87407:intron	30.0%
ATTCTATCGTGAACTTCATT+TGG	+	chr8.3:26112959-26112978	MS.gene87407:intron	30.0%
CATCATAGCATAATACTTTC+TGG	-	chr8.3:26112781-26112800	None:intergenic	30.0%
CCTTATAAAAAATCACAGCA+TGG	+	chr8.3:26113193-26113212	MS.gene87407:CDS	30.0%
GAAGTTCACGATAGAATTAT+TGG	-	chr8.3:26112956-26112975	None:intergenic	30.0%
GTTGCGAGATAATATTTGTT+GGG	+	chr8.3:26112348-26112367	MS.gene87407:CDS	30.0%
TCTCTATCTTTCAACAAGTT+GGG	-	chr8.3:26112676-26112695	None:intergenic	30.0%
TGAGCAATTAACATCAACAT+TGG	+	chr8.3:26112429-26112448	MS.gene87407:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	26112346	26114468	26112346	ID=MS.gene87407
chr8.3	mRNA	26112346	26114468	26112346	ID=MS.gene87407.t1;Parent=MS.gene87407
chr8.3	exon	26112346	26112721	26112346	ID=MS.gene87407.t1.exon1;Parent=MS.gene87407.t1
chr8.3	CDS	26112346	26112721	26112346	ID=cds.MS.gene87407.t1;Parent=MS.gene87407.t1
chr8.3	exon	26113158	26113592	26113158	ID=MS.gene87407.t1.exon2;Parent=MS.gene87407.t1
chr8.3	CDS	26113158	26113592	26113158	ID=cds.MS.gene87407.t1;Parent=MS.gene87407.t1
chr8.3	exon	26114029	26114468	26114029	ID=MS.gene87407.t1.exon3;Parent=MS.gene87407.t1
chr8.3	CDS	26114029	26114468	26114029	ID=cds.MS.gene87407.t1;Parent=MS.gene87407.t1

Gene Sequence

>MS.gene87407

ATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAGTTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGCAATTAACATCAACATTGGTTGCTAGTGGTGATTGGTGTGATACTGATGACTTCCGCTTGATAGACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTGTGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCCGCCAAGTCATTCATTGAGCAGGTTGAAGTTCTTGCAAAGAGATTCTGCCCCAACTTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGAGGTTTCTAACCTTTATCTTGGTTTTCCATAGGATGAAATGGTTTTGCTAAACCAGAAAGTATTATGCTATGATGAGTAGGTGTTTTTTGTTATGAAATGTTAAGTAACCTTGTTCTTTTATTCCTATTTAACAAGTTAAACTTGATTTGCAAGTGTTTGTTTTGATTAAAGCAATAGTTTGATATTCGATATTCCTGCTGGTTTTGTTTATGGCCTGTTGTTAGACCCAATAATTCTATCGTGAACTTCATTTGGTGAGAAATATAATCTTTTATGCTTATTTATTGGCTCAAAAACCGATAATTTTTTGTTAGAATGATGGATGTTGAGCATGTTCAAAATGGGATTTGATGCTTAATTAATCTTGTTAGAAAAAATACATTGGCTTGTATTTACTATAAGTATGTTCTGAAACTCGAGAATTTTTACAGCAAAAAAGGAATATCTGCTTGAGAGGGCTAAAGAGCCTTATAAAAAATCACAGCATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAGTTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGCAATTAACATCAACATTGGTTGCTAGTGGTGATTGGTGTGATACTGATGACTTCCGCTTGATAGACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTGTGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCCGCCAAGTCATTCATTGAGCAGGTTGAAGTTCTTGCAAAGAGATTCTGCCCCAACTTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGAGGTTTCTAACCTTTATCTTGGTTTTCCATAGGATGAAATGGTTTTGCTAAACCAGAAAGTATTATGCTATGATGAGTAGGTGTTTTTTGTTATGAAATGTTAAGTAACCTTGTTCTTTTATTCCTATTTAACAAGTTAAACTTGATTTGCAAGTGTTTGTTTTGATTAAAGCAATAGTTTGATATTCGATATTCCTGCTGGTTTTGTTTATGGCCTGTTGTTAGACCCAATAATTCTATCGTGAACTTCATTTGGTGAGAAATATAATCTTTTATGCTTATTTATTGGCTCAAAAACCGATAATTTTTTGTTAGAATGATGGATGTTGAGCATGTTCAAAATGGGATTTGATGCTTAATTAATCTTGTTAGAAAAAATACATTGGCTTGTATTTACTATAAGTATGTTCTGAAACTCGAGAATTTTTACAGCAAAAAAGGAATATCTGCTTGAGAGGGCTAAAGAGCCTTATAAAAAATCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAGTTGGAGACTCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGCAATTAACATCAACATTGGTTGCTAGTGGTGATTGGTGTGATACTGATGACTTCCGCTTGATAGACGCTTTATATGCTTTGGATGCTTGCTGCATGGAGGAGGTAGACTGGGACAATCTACTTGAGCATAGGTCTGGTGATGTGTGCAGGAAACGATGGGAACAAATGATCCACCATATTGGGGAGCATGCCGCCAAGTCATTCATTGAGCAGGTTGAAGTTCTTGCAAAGAGATTCTGCCCCAACTTGTTGAAAGATAGAGAGGCCTTTGACAACAAACCTGTGATTTGTTGA

Protein sequence

>MS.gene87407.t1

MLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSTLVASGDWCDTDDFRLIDALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVISKKEYLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSTLVASGDWCDTDDFRLIDALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVISKKEYLLERAKEPYKKSQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSTLVASGDWCDTDDFRLIDALYALDACCMEEVDWDNLLEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLKDREAFDNKPVIC