AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87832

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87832.t1 MTR_8g035540 95.732 328 14 0 14 341 1 328 0.0 645
MS.gene87832.t1 MTR_8g035520 74.096 332 81 2 1 332 1 327 1.43e-177 495
MS.gene87832.t1 MTR_6g464510 48.457 324 151 5 12 329 13 326 1.09e-104 310
MS.gene87832.t1 MTR_6g464280 48.457 324 147 6 15 329 12 324 2.25e-101 301
MS.gene87832.t1 MTR_1g102160 48.160 326 152 7 14 331 11 327 8.91e-95 285
MS.gene87832.t1 MTR_8g035500 42.236 322 178 5 12 330 2 318 5.15e-94 283
MS.gene87832.t1 MTR_6g464320 46.626 326 154 6 13 329 11 325 1.29e-93 282
MS.gene87832.t1 MTR_1g102170 45.988 324 154 7 9 325 25 334 7.10e-91 275
MS.gene87832.t1 MTR_0007s0520 44.109 331 160 7 7 329 11 324 1.90e-87 266
MS.gene87832.t1 MTR_6g464120 45.659 311 157 5 15 322 17 318 9.28e-86 268
MS.gene87832.t1 MTR_1g111280 35.404 322 181 9 22 329 34 342 3.52e-51 174
MS.gene87832.t1 MTR_7g406880 32.722 327 195 8 22 329 29 349 6.91e-51 172
MS.gene87832.t1 MTR_6g065370 34.899 298 172 6 43 329 47 333 5.10e-50 170
MS.gene87832.t1 MTR_6g065430 34.076 314 187 6 27 333 31 331 1.48e-49 169
MS.gene87832.t1 MTR_6g065400 34.899 298 172 6 43 329 47 333 3.45e-49 168
MS.gene87832.t1 MTR_6g065120 33.651 315 185 7 27 329 33 335 2.52e-47 163
MS.gene87832.t1 MTR_6g065110 32.087 321 191 7 27 334 33 339 3.38e-47 163
MS.gene87832.t1 MTR_4g050140 35.179 307 186 6 27 329 18 315 6.32e-47 161
MS.gene87832.t1 MTR_7g107040 33.851 322 185 9 22 332 15 319 5.48e-46 159
MS.gene87832.t1 MTR_6g065270 33.125 320 183 7 27 329 30 335 6.97e-46 159
MS.gene87832.t1 MTR_0007s0480 45.238 168 83 3 170 329 4 170 1.69e-41 143
MS.gene87832.t1 MTR_4g086510 33.861 316 187 9 22 329 16 317 2.21e-41 147
MS.gene87832.t1 MTR_1g012430 36.017 236 134 8 18 252 9 228 5.34e-41 145
MS.gene87832.t1 MTR_3g101420 32.063 315 192 10 22 329 15 314 1.53e-40 145
MS.gene87832.t1 MTR_3g012440 41.622 185 106 2 69 253 74 256 3.16e-40 144
MS.gene87832.t1 MTR_1g082210 30.606 330 187 10 26 334 37 345 1.34e-39 143
MS.gene87832.t1 MTR_7g056207 32.609 322 197 8 22 336 48 356 2.55e-39 142
MS.gene87832.t1 MTR_6g065340 30.380 316 177 8 27 329 43 328 8.19e-37 135
MS.gene87832.t1 MTR_1g089310 37.104 221 116 6 77 291 114 317 4.87e-36 134
MS.gene87832.t1 MTR_1g089310 37.104 221 116 6 77 291 98 301 5.15e-36 133
MS.gene87832.t1 MTR_5g005920 38.947 190 110 4 27 213 26 212 6.77e-36 133
MS.gene87832.t1 MTR_7g093950 32.061 262 155 6 77 329 99 346 2.86e-35 131
MS.gene87832.t1 MTR_4g086480 32.500 320 189 10 22 332 20 321 1.12e-34 129
MS.gene87832.t1 MTR_4g086540 35.602 191 109 4 27 216 31 208 2.71e-34 128
MS.gene87832.t1 MTR_1g105020 30.599 317 196 10 22 328 16 318 4.21e-33 125
MS.gene87832.t1 MTR_3g450680 31.153 321 195 10 22 329 24 331 1.46e-31 121
MS.gene87832.t1 MTR_5g005850 33.884 242 143 7 22 256 21 252 2.83e-30 117
MS.gene87832.t1 MTR_4g086470 32.245 245 149 6 55 295 48 279 1.08e-29 116
MS.gene87832.t1 MTR_5g005900 35.897 195 115 4 22 211 17 206 5.03e-29 114
MS.gene87832.t1 MTR_1g104930 41.361 191 99 5 22 209 20 200 5.13e-29 114
MS.gene87832.t1 MTR_7g051020 40.000 190 106 4 22 209 20 203 3.88e-28 112
MS.gene87832.t1 MTR_6g022710 27.875 287 171 5 83 335 159 443 1.15e-26 110
MS.gene87832.t1 MTR_8g040860 35.678 199 121 4 22 218 24 217 1.32e-26 107
MS.gene87832.t1 MTR_1g104933 41.772 158 84 4 55 209 46 198 6.15e-23 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87832.t1 AT2G45600 52.121 330 142 4 15 340 9 326 9.36e-121 351
MS.gene87832.t1 AT2G45610 45.938 320 166 4 13 329 8 323 1.94e-101 302
MS.gene87832.t1 AT5G62180 48.476 328 151 8 15 333 9 327 1.10e-95 287
MS.gene87832.t1 AT1G68620 39.453 256 141 5 4 256 14 258 3.44e-53 178
MS.gene87832.t1 AT5G16080 35.786 299 177 5 22 316 36 323 1.67e-52 177
MS.gene87832.t1 AT5G23530 31.348 319 188 10 26 334 34 331 8.25e-39 140
MS.gene87832.t1 AT5G06570 35.897 312 177 9 22 321 18 318 2.04e-38 139
MS.gene87832.t1 AT5G06570 35.897 312 177 9 22 321 18 318 2.04e-38 139
MS.gene87832.t1 AT5G06570 35.897 312 177 9 22 321 33 333 3.36e-38 139
MS.gene87832.t1 AT5G06570 35.897 312 177 9 22 321 33 333 3.36e-38 139
MS.gene87832.t1 AT1G49640 37.500 192 107 4 22 211 14 194 3.10e-37 136
MS.gene87832.t1 AT5G27320 29.781 319 193 8 26 329 37 339 4.64e-37 136
MS.gene87832.t1 AT3G48690 34.211 228 138 5 22 245 13 232 8.10e-37 135
MS.gene87832.t1 AT3G63010 29.532 342 198 9 21 340 32 352 1.55e-35 132
MS.gene87832.t1 AT3G48700 34.513 226 132 6 28 245 19 236 7.57e-34 127
MS.gene87832.t1 AT1G49650 36.649 191 114 4 22 211 69 253 8.53e-33 125
MS.gene87832.t1 AT1G47480 32.114 246 148 6 8 253 4 230 8.95e-33 124
MS.gene87832.t1 AT1G19190 32.877 219 136 5 21 233 12 225 1.84e-32 123
MS.gene87832.t1 AT3G05120 31.142 289 169 7 26 299 37 310 1.13e-31 122
MS.gene87832.t1 AT2G03550 37.766 188 109 3 22 209 13 192 2.91e-31 120
MS.gene87832.t1 AT1G49660 35.025 197 121 4 18 212 8 199 1.19e-30 119
MS.gene87832.t1 AT5G14310 34.742 213 105 4 75 253 142 354 2.92e-30 120
MS.gene87832.t1 AT3G27320 33.488 215 106 4 76 253 123 337 2.05e-28 114
MS.gene87832.t1 AT3G27320 33.488 215 106 4 76 253 155 369 2.55e-28 114

Find 118 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCAACAATGGCAGGAATT+TGG 0.210540 8.4:-61967718 None:intergenic
TGTTTGGAATTAGGTGAATT+TGG 0.218605 8.4:-61967386 None:intergenic
ATGCAGTTGATTCTCTTCTT+TGG 0.229320 8.4:+61967792 MS.gene87832:CDS
TTGCCAAGGTGCTTTGTTAA+TGG 0.257297 8.4:+61968175 MS.gene87832:CDS
AAAGGAGCTAGCGAAGATTT+TGG 0.271352 8.4:+61968228 MS.gene87832:CDS
AGGAAGATGGTGCAGGGTTC+GGG 0.278099 8.4:-61967592 None:intergenic
GAGGAAGATGGTGCAGGGTT+CGG 0.288979 8.4:-61967593 None:intergenic
TGAAATCTTTGATCATTCTA+AGG 0.290499 8.4:+61968306 MS.gene87832:CDS
ATTGTGCTTTGTTTGGAATT+AGG 0.318456 8.4:-61967395 None:intergenic
AGCACGTAGACCCGTGAAAT+AGG 0.319272 8.4:-61967921 None:intergenic
GTAGAGAATGATGGGGAGTT+TGG 0.319640 8.4:-61967621 None:intergenic
GGCAACAATGGCAGGAATTT+GGG 0.333621 8.4:-61967717 None:intergenic
GGGATCCATTGTGCTTTGTT+TGG 0.344187 8.4:-61967402 None:intergenic
CACTAATTCGCCACCGGAAC+CGG 0.347970 8.4:+61967511 MS.gene87832:CDS
GCAGGGATGGTGGAAGATAA+GGG 0.378351 8.4:-61967681 None:intergenic
AGCAGGGATGGTGGAAGATA+AGG 0.379203 8.4:-61967682 None:intergenic
TAAGGGAGGAAGGGTGGTAG+AGG 0.393535 8.4:-61967664 None:intergenic
GACTGAATCCGAGCTTCGTT+TGG 0.401433 8.4:+61968018 MS.gene87832:CDS
TTGGAGGATGGTGGCACGGT+GGG 0.403279 8.4:-61967485 None:intergenic
ACAACTTTGGATCACGTATA+CGG 0.411261 8.4:+61968136 MS.gene87832:CDS
TATGATCCCTCGAATCTTAA+CGG 0.430500 8.4:-61967963 None:intergenic
TCTTTCGAGAGAGCCGGTTC+CGG 0.432374 8.4:-61967524 None:intergenic
CTTTGATAAATGTTTCTTGA+TGG 0.434816 8.4:+61967874 MS.gene87832:CDS
TTTCTTGTTAGTGAACCATC+AGG 0.441242 8.4:-61967452 None:intergenic
TGGTCCCGGTCTTTGCCCTC+AGG 0.451278 8.4:-61968097 None:intergenic
CGGTTCCGGTGGCGAATTAG+TGG 0.455746 8.4:-61967510 None:intergenic
CTCTCTCCCGTTAAGATTCG+AGG 0.456764 8.4:+61967956 MS.gene87832:CDS
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.4:+61967635 MS.gene87832:CDS
ATACCCATCCTCATCAAAAC+AGG 0.463187 8.4:-61968275 None:intergenic
GTATTGCAATCCAACAACTT+TGG 0.464198 8.4:+61968123 MS.gene87832:CDS
GGAAGATAAGGGAGGAAGGG+TGG 0.467019 8.4:-61967670 None:intergenic
ATTGGAGGATGGTGGCACGG+TGG 0.468111 8.4:-61967486 None:intergenic
CGGTGGCGAATTAGTGGGAT+TGG 0.468126 8.4:-61967504 None:intergenic
ACTGCATCATCGTAGGCTGC+TGG 0.469377 8.4:-61967776 None:intergenic
TTTGATAAATGTTTCTTGAT+GGG 0.469837 8.4:+61967875 MS.gene87832:CDS
GCTGCTGGGAGGCGATGCTC+AGG 0.470036 8.4:-61967761 None:intergenic
TTGGGCAGCTAATGTGGAGC+AGG 0.470169 8.4:-61967699 None:intergenic
ATGATCCCTCGAATCTTAAC+GGG 0.471461 8.4:-61967962 None:intergenic
GCAGCGGAGGAAGATGGTGC+AGG 0.471831 8.4:-61967599 None:intergenic
TGGCTACGGTGGGGATCCAT+TGG 0.473221 8.4:+61968195 MS.gene87832:CDS
TATACGTGATCCAAAGTTGT+TGG 0.491009 8.4:-61968133 None:intergenic
CCATGGAAGTAGAGAATGAT+GGG 0.492333 8.4:-61967629 None:intergenic
ATGAGATCACCTGCTGGTAA+TGG 0.493022 8.4:-61968058 None:intergenic
ATCGTTAACCAAACGAAGCT+CGG 0.493769 8.4:-61968026 None:intergenic
TGGAGGATGGTGGCACGGTG+GGG 0.493945 8.4:-61967484 None:intergenic
CCCATCATTCTCTACTTCCA+TGG 0.494966 8.4:+61967629 MS.gene87832:CDS
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.4:+61968181 MS.gene87832:CDS
GATTGCAATACTCGTGGTCC+CGG 0.503398 8.4:-61968111 None:intergenic
TCAACAGAGGCAACAATGGC+AGG 0.505210 8.4:-61967725 None:intergenic
CAGCTAATGTGGAGCAGGGA+TGG 0.506859 8.4:-61967694 None:intergenic
ACCATGGAAGTAGAGAATGA+TGG 0.507797 8.4:-61967630 None:intergenic
CTACGGTGGGGATCCATTGG+TGG 0.515205 8.4:+61968198 MS.gene87832:CDS
TGGTGGAAGATAAGGGAGGA+AGG 0.516872 8.4:-61967674 None:intergenic
CTGCATCATCGTAGGCTGCT+GGG 0.517073 8.4:-61967775 None:intergenic
GAATTAGTGGGATTGGAGGA+TGG 0.518130 8.4:-61967497 None:intergenic
AGTTTGGCAGCGGAGGAAGA+TGG 0.520832 8.4:-61967605 None:intergenic
AGGAATTTGGGCAGCTAATG+TGG 0.521371 8.4:-61967705 None:intergenic
TCCATTGGTGGATAAGCAAA+AGG 0.523499 8.4:+61968210 MS.gene87832:CDS
CGTATATTGCCATTACCAGC+AGG 0.526449 8.4:+61968049 MS.gene87832:CDS
ATCCAACGGAATCTGATCCA+TGG 0.529983 8.4:+61967834 MS.gene87832:CDS
TCTTAACGGGAGAGAGATCA+AGG 0.533892 8.4:-61967949 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.4:+61968185 MS.gene87832:CDS
GGAATATCTTTCGAGAGAGC+CGG 0.540397 8.4:-61967530 None:intergenic
CACGTATACGGTGAAAAGAT+CGG 0.541877 8.4:+61968148 MS.gene87832:CDS
TCCACATGGTCTCTGATCCA+TGG 0.542444 8.4:-61967851 None:intergenic
ATCCATGGATCAGATTCCGT+TGG 0.545679 8.4:-61967836 None:intergenic
GGCTGCACACGGGGTGCATG+TGG 0.546061 8.4:+61968249 MS.gene87832:CDS
GTTTGCCTGAGGGCAAAGAC+CGG 0.546161 8.4:+61968092 MS.gene87832:CDS
TTTGCCTGAGGGCAAAGACC+GGG 0.548229 8.4:+61968093 MS.gene87832:CDS
TTCTTGATGGGAGACAGTGC+CGG 0.548245 8.4:+61967887 MS.gene87832:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.551058 8.4:+61968184 MS.gene87832:CDS
GAAATAGGCTATATTACCTC+CGG 0.551917 8.4:-61967906 None:intergenic
AGGTAATATAGCCTATTTCA+CGG 0.552620 8.4:+61967910 MS.gene87832:CDS
TGGCGAATTAGTGGGATTGG+AGG 0.561997 8.4:-61967501 None:intergenic
TTCGAGAGAGCCGGTTCCGG+TGG 0.563956 8.4:-61967521 None:intergenic
TGGTCCCTGTGTTTGCCTGA+GGG 0.566573 8.4:+61968082 MS.gene87832:CDS
GTGGTCCCTGTGTTTGCCTG+AGG 0.571411 8.4:+61968081 MS.gene87832:CDS
AAAATCAAACTAAACCCTGA+TGG 0.582070 8.4:+61967437 MS.gene87832:CDS
GGTAATATAGCCTATTTCAC+GGG 0.582524 8.4:+61967911 MS.gene87832:CDS
TTCTTGTTAGTGAACCATCA+GGG 0.584038 8.4:-61967451 None:intergenic
GGTGGAAGATAAGGGAGGAA+GGG 0.587951 8.4:-61967673 None:intergenic
GTTCGGGAGGAAGAGACGAA+TGG 0.588388 8.4:-61967576 None:intergenic
CTTTGCCCTCAGGCAAACAC+AGG 0.589918 8.4:-61968087 None:intergenic
GGGATTGGAGGATGGTGGCA+CGG 0.593432 8.4:-61967489 None:intergenic
CTAATGTGGAGCAGGGATGG+TGG 0.596208 8.4:-61967691 None:intergenic
AAAAGATCGGACGGTTGCCA+AGG 0.596761 8.4:+61968161 MS.gene87832:CDS
GGTTCCGGTGGCGAATTAGT+GGG 0.597952 8.4:-61967509 None:intergenic
GATGGGGAGTTTGGCAGCGG+AGG 0.598370 8.4:-61967612 None:intergenic
AAGATGGTGCAGGGTTCGGG+AGG 0.601148 8.4:-61967589 None:intergenic
CAATCCCACTAATTCGCCAC+CGG 0.601326 8.4:+61967505 MS.gene87832:CDS
AATGATGGGGAGTTTGGCAG+CGG 0.606209 8.4:-61967615 None:intergenic
CAGCGGAGGAAGATGGTGCA+GGG 0.613474 8.4:-61967598 None:intergenic
AGAATCAACTGCATCATCGT+AGG 0.614662 8.4:-61967783 None:intergenic
AAGTGTTACATAGAGGATTG+AGG 0.616571 8.4:-61968385 None:intergenic
TCTCTCCCGTTAAGATTCGA+GGG 0.617230 8.4:+61967957 MS.gene87832:CDS
ATCCCAAGCTCAAAATCCAA+CGG 0.621724 8.4:+61967820 MS.gene87832:CDS
TACCAGCAGGTGATCTCATG+TGG 0.621833 8.4:+61968062 MS.gene87832:CDS
CGGGAGGAAGAGACGAATGG+AGG 0.622270 8.4:-61967573 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.4:+61968186 MS.gene87832:CDS
ATCATTCTCTACTTCCATGG+TGG 0.627271 8.4:+61967632 MS.gene87832:CDS
ATAATCAACAGAGGCAACAA+TGG 0.631313 8.4:-61967729 None:intergenic
TCCCACGAAGTGTTACATAG+AGG 0.639443 8.4:-61968392 None:intergenic
TGGGCAGCTAATGTGGAGCA+GGG 0.644565 8.4:-61967698 None:intergenic
GACCACATGAGATCACCTGC+TGG 0.646204 8.4:-61968064 None:intergenic
TTGTTGGATTGCAATACTCG+TGG 0.649118 8.4:-61968117 None:intergenic
AACATTTATCAAAGTCCACA+TGG 0.649642 8.4:-61967865 None:intergenic
TTGATGGGAGACAGTGCCGG+AGG 0.655276 8.4:+61967890 MS.gene87832:CDS
TAATTCCAAACAAAGCACAA+TGG 0.666343 8.4:+61967397 MS.gene87832:CDS
GGGATGGTGGAAGATAAGGG+AGG 0.667136 8.4:-61967678 None:intergenic
AGAGGATGAAACCACCACCA+TGG 0.674528 8.4:-61967646 None:intergenic
TCCATGGATCAGAGACCATG+TGG 0.678870 8.4:+61967850 MS.gene87832:CDS
TAGCCATTAACAAAGCACCT+TGG 0.684803 8.4:-61968178 None:intergenic
TTTGCCCTCAGGCAAACACA+GGG 0.698468 8.4:-61968086 None:intergenic
TTAGTGGGATTGGAGGATGG+TGG 0.709115 8.4:-61967494 None:intergenic
CGAGAGACGATAATCAACAG+AGG 0.723701 8.4:-61967738 None:intergenic
CATCATCGTAGGCTGCTGGG+AGG 0.726935 8.4:-61967772 None:intergenic
TATACGGTGAAAAGATCGGA+CGG 0.731375 8.4:+61968152 MS.gene87832:CDS
CATGGAAGTAGAGAATGATG+GGG 0.743084 8.4:-61967628 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGATAAATGTTTCTTGAT+GGG + chr8.4:61967875-61967894 MS.gene87832:CDS 20.0%
!!! ATGAAATATCCATTTTTTAG+TGG + chr8.4:61967986-61968005 MS.gene87832:CDS 20.0%
! CTTTGATAAATGTTTCTTGA+TGG + chr8.4:61967874-61967893 MS.gene87832:CDS 25.0%
! TGAAATCTTTGATCATTCTA+AGG + chr8.4:61968306-61968325 MS.gene87832:CDS 25.0%
!!! TTGATTTTGAGGAATTCATA+GGG - chr8.4:61967425-61967444 None:intergenic 25.0%
!!! TTTGATTTTGAGGAATTCAT+AGG - chr8.4:61967426-61967445 None:intergenic 25.0%
AAAATCAAACTAAACCCTGA+TGG + chr8.4:61967437-61967456 MS.gene87832:CDS 30.0%
AACATTTATCAAAGTCCACA+TGG - chr8.4:61967868-61967887 None:intergenic 30.0%
AGGTAATATAGCCTATTTCA+CGG + chr8.4:61967910-61967929 MS.gene87832:CDS 30.0%
TAATTCCAAACAAAGCACAA+TGG + chr8.4:61967397-61967416 MS.gene87832:CDS 30.0%
! TGTTTGGAATTAGGTGAATT+TGG - chr8.4:61967389-61967408 None:intergenic 30.0%
!! ATTGTGCTTTGTTTGGAATT+AGG - chr8.4:61967398-61967417 None:intergenic 30.0%
ACAACTTTGGATCACGTATA+CGG + chr8.4:61968136-61968155 MS.gene87832:CDS 35.0%
ATAATCAACAGAGGCAACAA+TGG - chr8.4:61967732-61967751 None:intergenic 35.0%
CTCTGAACTCCACTAAAAAA+TGG - chr8.4:61967998-61968017 None:intergenic 35.0%
GAAATAGGCTATATTACCTC+CGG - chr8.4:61967909-61967928 None:intergenic 35.0%
GGTAATATAGCCTATTTCAC+GGG + chr8.4:61967911-61967930 MS.gene87832:CDS 35.0%
GTATTGCAATCCAACAACTT+TGG + chr8.4:61968123-61968142 MS.gene87832:CDS 35.0%
TATACGTGATCCAAAGTTGT+TGG - chr8.4:61968136-61968155 None:intergenic 35.0%
TATGATCCCTCGAATCTTAA+CGG - chr8.4:61967966-61967985 None:intergenic 35.0%
TTCTTGTTAGTGAACCATCA+GGG - chr8.4:61967454-61967473 None:intergenic 35.0%
TTTCTTGTTAGTGAACCATC+AGG - chr8.4:61967455-61967474 None:intergenic 35.0%
! ATGCAGTTGATTCTCTTCTT+TGG + chr8.4:61967792-61967811 MS.gene87832:CDS 35.0%
!!! CAGGGTTTAGTTTGATTTTG+AGG - chr8.4:61967436-61967455 None:intergenic 35.0%
!!! CATTTTTTAGTGGAGTTCAG+AGG + chr8.4:61967996-61968015 MS.gene87832:CDS 35.0%
ACCATGGAAGTAGAGAATGA+TGG - chr8.4:61967633-61967652 None:intergenic 40.0%
AGAATCAACTGCATCATCGT+AGG - chr8.4:61967786-61967805 None:intergenic 40.0%
ATACCCATCCTCATCAAAAC+AGG - chr8.4:61968278-61968297 None:intergenic 40.0%
ATCATTCTCTACTTCCATGG+TGG + chr8.4:61967632-61967651 MS.gene87832:CDS 40.0%
ATCCCAAGCTCAAAATCCAA+CGG + chr8.4:61967820-61967839 MS.gene87832:CDS 40.0%
ATCGTTAACCAAACGAAGCT+CGG - chr8.4:61968029-61968048 None:intergenic 40.0%
ATGATCCCTCGAATCTTAAC+GGG - chr8.4:61967965-61967984 None:intergenic 40.0%
CACGTATACGGTGAAAAGAT+CGG + chr8.4:61968148-61968167 MS.gene87832:CDS 40.0%
CATGGAAGTAGAGAATGATG+GGG - chr8.4:61967631-61967650 None:intergenic 40.0%
CCATGGAAGTAGAGAATGAT+GGG - chr8.4:61967632-61967651 None:intergenic 40.0%
TATACGGTGAAAAGATCGGA+CGG + chr8.4:61968152-61968171 MS.gene87832:CDS 40.0%
TTGTTGGATTGCAATACTCG+TGG - chr8.4:61968120-61968139 None:intergenic 40.0%
! AAAGGAGCTAGCGAAGATTT+TGG + chr8.4:61968228-61968247 MS.gene87832:CDS 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.4:61968181-61968200 MS.gene87832:CDS 40.0%
! ATTCCGTTGGATTTTGAGCT+TGG - chr8.4:61967826-61967845 None:intergenic 40.0%
! TAGCCATTAACAAAGCACCT+TGG - chr8.4:61968181-61968200 None:intergenic 40.0%
! TCCATTGGTGGATAAGCAAA+AGG + chr8.4:61968210-61968229 MS.gene87832:CDS 40.0%
! TCCTTTTGCTTATCCACCAA+TGG - chr8.4:61968214-61968233 None:intergenic 40.0%
! TTCCGTTGGATTTTGAGCTT+GGG - chr8.4:61967825-61967844 None:intergenic 40.0%
! TTGCCAAGGTGCTTTGTTAA+TGG + chr8.4:61968175-61968194 MS.gene87832:CDS 40.0%
! TTGGATTTTGAGCTTGGGAT+TGG - chr8.4:61967820-61967839 None:intergenic 40.0%
!!! AGTCCTGTTTTGATGAGGAT+GGG + chr8.4:61968272-61968291 MS.gene87832:CDS 40.0%
AGGAATTTGGGCAGCTAATG+TGG - chr8.4:61967708-61967727 None:intergenic 45.0%
AGGCAACAATGGCAGGAATT+TGG - chr8.4:61967721-61967740 None:intergenic 45.0%
ATCCAACGGAATCTGATCCA+TGG + chr8.4:61967834-61967853 MS.gene87832:CDS 45.0%
ATCCATGGATCAGATTCCGT+TGG - chr8.4:61967839-61967858 None:intergenic 45.0%
ATGAGATCACCTGCTGGTAA+TGG - chr8.4:61968061-61968080 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.4:61967635-61967654 MS.gene87832:CDS 45.0%
CCCATCATTCTCTACTTCCA+TGG + chr8.4:61967629-61967648 MS.gene87832:CDS 45.0%
CGAGAGACGATAATCAACAG+AGG - chr8.4:61967741-61967760 None:intergenic 45.0%
CGTATATTGCCATTACCAGC+AGG + chr8.4:61968049-61968068 MS.gene87832:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.4:61968186-61968205 MS.gene87832:CDS 45.0%
GAATTAGTGGGATTGGAGGA+TGG - chr8.4:61967500-61967519 None:intergenic 45.0%
GGAATATCTTTCGAGAGAGC+CGG - chr8.4:61967533-61967552 None:intergenic 45.0%
GGCAACAATGGCAGGAATTT+GGG - chr8.4:61967720-61967739 None:intergenic 45.0%
TCTCTCCCGTTAAGATTCGA+GGG + chr8.4:61967957-61967976 MS.gene87832:CDS 45.0%
TCTTAACGGGAGAGAGATCA+AGG - chr8.4:61967952-61967971 None:intergenic 45.0%
! ACGAATGGAGGTTTTTGCAG+CGG - chr8.4:61967564-61967583 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.4:61968185-61968204 MS.gene87832:CDS 45.0%
! GGGATCCATTGTGCTTTGTT+TGG - chr8.4:61967405-61967424 None:intergenic 45.0%
! GTAGAGAATGATGGGGAGTT+TGG - chr8.4:61967624-61967643 None:intergenic 45.0%
! GTTTTTGCAGCGGCGTTTAA+GGG - chr8.4:61967554-61967573 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.4:61968184-61968203 MS.gene87832:CDS 45.0%
!!! GAGTCCTGTTTTGATGAGGA+TGG + chr8.4:61968271-61968290 MS.gene87832:CDS 45.0%
!!! TGTGGAGTCCTGTTTTGATG+AGG + chr8.4:61968267-61968286 MS.gene87832:CDS 45.0%
AAAAGATCGGACGGTTGCCA+AGG + chr8.4:61968161-61968180 MS.gene87832:CDS 50.0%
AGAGGATGAAACCACCACCA+TGG - chr8.4:61967649-61967668 None:intergenic 50.0%
AGCACGTAGACCCGTGAAAT+AGG - chr8.4:61967924-61967943 None:intergenic 50.0%
CAATCCCACTAATTCGCCAC+CGG + chr8.4:61967505-61967524 MS.gene87832:CDS 50.0%
CTCTCTCCCGTTAAGATTCG+AGG + chr8.4:61967956-61967975 MS.gene87832:CDS 50.0%
GACTGAATCCGAGCTTCGTT+TGG + chr8.4:61968018-61968037 MS.gene87832:CDS 50.0%
GATTGCAATACTCGTGGTCC+CGG - chr8.4:61968114-61968133 None:intergenic 50.0%
GGTGGAAGATAAGGGAGGAA+GGG - chr8.4:61967676-61967695 None:intergenic 50.0%
TACCAGCAGGTGATCTCATG+TGG + chr8.4:61968062-61968081 MS.gene87832:CDS 50.0%
TCAACAGAGGCAACAATGGC+AGG - chr8.4:61967728-61967747 None:intergenic 50.0%
TCCACATGGTCTCTGATCCA+TGG - chr8.4:61967854-61967873 None:intergenic 50.0%
TCCATGGATCAGAGACCATG+TGG + chr8.4:61967850-61967869 MS.gene87832:CDS 50.0%
TGGCGAATTAGTGGGATTGG+AGG - chr8.4:61967504-61967523 None:intergenic 50.0%
TGGTGGAAGATAAGGGAGGA+AGG - chr8.4:61967677-61967696 None:intergenic 50.0%
TTAGTGGGATTGGAGGATGG+TGG - chr8.4:61967497-61967516 None:intergenic 50.0%
TTCTTGATGGGAGACAGTGC+CGG + chr8.4:61967887-61967906 MS.gene87832:CDS 50.0%
TTTGCCCTCAGGCAAACACA+GGG - chr8.4:61968089-61968108 None:intergenic 50.0%
! AATGATGGGGAGTTTGGCAG+CGG - chr8.4:61967618-61967637 None:intergenic 50.0%
! GGTTTTTGCAGCGGCGTTTA+AGG - chr8.4:61967555-61967574 None:intergenic 50.0%
!! AGCAGGGATGGTGGAAGATA+AGG - chr8.4:61967685-61967704 None:intergenic 50.0%
!! GCAGGGATGGTGGAAGATAA+GGG - chr8.4:61967684-61967703 None:intergenic 50.0%
!!! CGAAGATTTTGGCTGCACAC+GGG + chr8.4:61968239-61968258 MS.gene87832:CDS 50.0%
!!! GAAGATTTTGGCTGCACACG+GGG + chr8.4:61968240-61968259 MS.gene87832:CDS 50.0%
!!! GCGAAGATTTTGGCTGCACA+CGG + chr8.4:61968238-61968257 MS.gene87832:CDS 50.0%
ACTGCATCATCGTAGGCTGC+TGG - chr8.4:61967779-61967798 None:intergenic 55.0%
AGGAAGATGGTGCAGGGTTC+GGG - chr8.4:61967595-61967614 None:intergenic 55.0%
AGTTTGGCAGCGGAGGAAGA+TGG - chr8.4:61967608-61967627 None:intergenic 55.0%
CACTAATTCGCCACCGGAAC+CGG + chr8.4:61967511-61967530 MS.gene87832:CDS 55.0%
CAGCTAATGTGGAGCAGGGA+TGG - chr8.4:61967697-61967716 None:intergenic 55.0%
CGGTGGCGAATTAGTGGGAT+TGG - chr8.4:61967507-61967526 None:intergenic 55.0%
CTAATGTGGAGCAGGGATGG+TGG - chr8.4:61967694-61967713 None:intergenic 55.0%
CTGCATCATCGTAGGCTGCT+GGG - chr8.4:61967778-61967797 None:intergenic 55.0%
CTTTGCCCTCAGGCAAACAC+AGG - chr8.4:61968090-61968109 None:intergenic 55.0%
GACCACATGAGATCACCTGC+TGG - chr8.4:61968067-61968086 None:intergenic 55.0%
GAGGAAGATGGTGCAGGGTT+CGG - chr8.4:61967596-61967615 None:intergenic 55.0%
GGAAGATAAGGGAGGAAGGG+TGG - chr8.4:61967673-61967692 None:intergenic 55.0%
GGTTCCGGTGGCGAATTAGT+GGG - chr8.4:61967512-61967531 None:intergenic 55.0%
GTTCGGGAGGAAGAGACGAA+TGG - chr8.4:61967579-61967598 None:intergenic 55.0%
GTTTGCCTGAGGGCAAAGAC+CGG + chr8.4:61968092-61968111 MS.gene87832:CDS 55.0%
TAAGGGAGGAAGGGTGGTAG+AGG - chr8.4:61967667-61967686 None:intergenic 55.0%
TGGGCAGCTAATGTGGAGCA+GGG - chr8.4:61967701-61967720 None:intergenic 55.0%
TGGTCCCTGTGTTTGCCTGA+GGG + chr8.4:61968082-61968101 MS.gene87832:CDS 55.0%
TTGGGCAGCTAATGTGGAGC+AGG - chr8.4:61967702-61967721 None:intergenic 55.0%
TTTGCCTGAGGGCAAAGACC+GGG + chr8.4:61968093-61968112 MS.gene87832:CDS 55.0%
! TCTTTCGAGAGAGCCGGTTC+CGG - chr8.4:61967527-61967546 None:intergenic 55.0%
!! GGGATGGTGGAAGATAAGGG+AGG - chr8.4:61967681-61967700 None:intergenic 55.0%
AAGATGGTGCAGGGTTCGGG+AGG - chr8.4:61967592-61967611 None:intergenic 60.0%
CAGCGGAGGAAGATGGTGCA+GGG - chr8.4:61967601-61967620 None:intergenic 60.0%
CATCATCGTAGGCTGCTGGG+AGG - chr8.4:61967775-61967794 None:intergenic 60.0%
CGGGAGGAAGAGACGAATGG+AGG - chr8.4:61967576-61967595 None:intergenic 60.0%
CGGTTCCGGTGGCGAATTAG+TGG - chr8.4:61967513-61967532 None:intergenic 60.0%
CTACGGTGGGGATCCATTGG+TGG + chr8.4:61968198-61968217 MS.gene87832:CDS 60.0%
GTGGTCCCTGTGTTTGCCTG+AGG + chr8.4:61968081-61968100 MS.gene87832:CDS 60.0%
TGGCTACGGTGGGGATCCAT+TGG + chr8.4:61968195-61968214 MS.gene87832:CDS 60.0%
! ATTGGAGGATGGTGGCACGG+TGG - chr8.4:61967489-61967508 None:intergenic 60.0%
! GGGATTGGAGGATGGTGGCA+CGG - chr8.4:61967492-61967511 None:intergenic 60.0%
! TTGATGGGAGACAGTGCCGG+AGG + chr8.4:61967890-61967909 MS.gene87832:CDS 60.0%
! TTGGAGGATGGTGGCACGGT+GGG - chr8.4:61967488-61967507 None:intergenic 60.0%
GATGGGGAGTTTGGCAGCGG+AGG - chr8.4:61967615-61967634 None:intergenic 65.0%
GCAGCGGAGGAAGATGGTGC+AGG - chr8.4:61967602-61967621 None:intergenic 65.0%
TGGTCCCGGTCTTTGCCCTC+AGG - chr8.4:61968100-61968119 None:intergenic 65.0%
! TGGAGGATGGTGGCACGGTG+GGG - chr8.4:61967487-61967506 None:intergenic 65.0%
! TTCGAGAGAGCCGGTTCCGG+TGG - chr8.4:61967524-61967543 None:intergenic 65.0%
GCTGCTGGGAGGCGATGCTC+AGG - chr8.4:61967764-61967783 None:intergenic 70.0%
GGCTGCACACGGGGTGCATG+TGG + chr8.4:61968249-61968268 MS.gene87832:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 61967377 61968402 61967377 ID=MS.gene87832
chr8.4 mRNA 61967377 61968402 61967377 ID=MS.gene87832.t1;Parent=MS.gene87832
chr8.4 exon 61967377 61968402 61967377 ID=MS.gene87832.t1.exon1;Parent=MS.gene87832.t1
chr8.4 CDS 61967377 61968402 61967377 ID=cds.MS.gene87832.t1;Parent=MS.gene87832.t1
Gene Sequence

>MS.gene87832

ATGGCAGAACCAAATTCACCTAATTCCAAACAAAGCACAATGGATCCCTATGAATTCCTCAAAATCAAACTAAACCCTGATGGTTCACTAACAAGAAACTACATTGTCCCCACCGTGCCACCATCCTCCAATCCCACTAATTCGCCACCGGAACCGGCTCTCTCGAAAGATATTCCCTTAAACGCCGCTGCAAAAACCTCCATTCGTCTCTTCCTCCCGAACCCTGCACCATCTTCCTCCGCTGCCAAACTCCCCATCATTCTCTACTTCCATGGTGGTGGTTTCATCCTCTACCACCCTTCCTCCCTTATCTTCCACCATCCCTGCTCCACATTAGCTGCCCAAATTCCTGCCATTGTTGCCTCTGTTGATTATCGTCTCTCGCCTGAGCATCGCCTCCCAGCAGCCTACGATGATGCAGTTGATTCTCTTCTTTGGCTCCAATCCCAAGCTCAAAATCCAACGGAATCTGATCCATGGATCAGAGACCATGTGGACTTTGATAAATGTTTCTTGATGGGAGACAGTGCCGGAGGTAATATAGCCTATTTCACGGGTCTACGTGCTCTCGACCTTGATCTCTCTCCCGTTAAGATTCGAGGGATCATAATGAAATATCCATTTTTTAGTGGAGTTCAGAGGACTGAATCCGAGCTTCGTTTGGTTAACGATCGTATATTGCCATTACCAGCAGGTGATCTCATGTGGTCCCTGTGTTTGCCTGAGGGCAAAGACCGGGACCACGAGTATTGCAATCCAACAACTTTGGATCACGTATACGGTGAAAAGATCGGACGGTTGCCAAGGTGCTTTGTTAATGGCTACGGTGGGGATCCATTGGTGGATAAGCAAAAGGAGCTAGCGAAGATTTTGGCTGCACACGGGGTGCATGTGGAGTCCTGTTTTGATGAGGATGGGTATCATGCTGTTGAAATCTTTGATCATTCTAAGGCACAAGTTTTGCTTGATAATGTTAAGAAATTTATACTCTCTGCTGTTTCTGTTGCTCCTCAATCCTCTATGTAA
Protein sequence

>MS.gene87832.t1

MAEPNSPNSKQSTMDPYEFLKIKLNPDGSLTRNYIVPTVPPSSNPTNSPPEPALSKDIPLNAAAKTSIRLFLPNPAPSSSAAKLPIILYFHGGGFILYHPSSLIFHHPCSTLAAQIPAIVASVDYRLSPEHRLPAAYDDAVDSLLWLQSQAQNPTESDPWIRDHVDFDKCFLMGDSAGGNIAYFTGLRALDLDLSPVKIRGIIMKYPFFSGVQRTESELRLVNDRILPLPAGDLMWSLCLPEGKDRDHEYCNPTTLDHVYGEKIGRLPRCFVNGYGGDPLVDKQKELAKILAAHGVHVESCFDEDGYHAVEIFDHSKAQVLLDNVKKFILSAVSVAPQSSM