AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87834

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87834.t1 MTR_8g035520 96.353 329 12 0 1 329 1 329 0.0 653
MS.gene87834.t1 MTR_8g035540 76.489 319 71 1 13 327 1 319 1.31e-179 499
MS.gene87834.t1 MTR_6g464510 51.064 329 147 6 3 325 7 327 2.20e-111 327
MS.gene87834.t1 MTR_6g464280 50.779 321 142 5 14 325 12 325 2.20e-105 311
MS.gene87834.t1 MTR_6g464320 47.546 326 155 5 12 328 11 329 1.20e-97 292
MS.gene87834.t1 MTR_0007s0520 47.289 332 154 6 3 326 8 326 8.91e-97 290
MS.gene87834.t1 MTR_1g102160 45.679 324 159 7 13 326 11 327 2.97e-92 278
MS.gene87834.t1 MTR_1g102170 46.250 320 151 6 10 320 27 334 2.10e-91 276
MS.gene87834.t1 MTR_6g464120 47.386 306 153 4 14 316 17 317 1.14e-90 280
MS.gene87834.t1 MTR_8g035500 42.138 318 178 4 11 324 2 317 3.45e-89 270
MS.gene87834.t1 MTR_1g111280 37.294 303 176 6 21 316 34 329 2.28e-56 187
MS.gene87834.t1 MTR_7g406880 34.877 324 190 7 21 325 29 350 7.63e-52 175
MS.gene87834.t1 MTR_6g065120 35.333 300 171 7 40 327 50 338 1.05e-49 169
MS.gene87834.t1 MTR_6g065430 35.986 289 170 5 40 324 50 327 1.76e-49 168
MS.gene87834.t1 MTR_7g107040 34.076 314 195 7 21 329 15 321 1.76e-48 165
MS.gene87834.t1 MTR_6g065370 34.114 299 175 7 40 327 49 336 4.47e-48 165
MS.gene87834.t1 MTR_0007s0480 50.000 172 77 3 164 327 3 173 2.22e-47 157
MS.gene87834.t1 MTR_6g065110 33.220 295 177 6 42 326 52 336 5.67e-47 162
MS.gene87834.t1 MTR_6g065270 34.641 306 168 8 40 327 47 338 5.87e-47 162
MS.gene87834.t1 MTR_4g050140 34.426 305 191 6 26 326 18 317 2.04e-46 160
MS.gene87834.t1 MTR_6g065400 33.445 299 177 7 40 327 49 336 2.79e-46 160
MS.gene87834.t1 MTR_1g012430 35.870 276 161 9 17 290 9 270 7.04e-46 158
MS.gene87834.t1 MTR_4g086510 34.921 315 183 9 21 325 16 318 1.07e-44 155
MS.gene87834.t1 MTR_3g101420 32.907 313 192 9 21 326 15 316 1.44e-43 152
MS.gene87834.t1 MTR_7g056207 33.758 314 188 8 21 325 48 350 5.74e-43 152
MS.gene87834.t1 MTR_4g086540 32.237 304 170 8 26 325 31 302 3.23e-41 146
MS.gene87834.t1 MTR_1g082210 30.650 323 186 8 25 326 37 342 1.88e-39 142
MS.gene87834.t1 MTR_4g086480 31.731 312 196 8 21 326 20 320 3.16e-39 141
MS.gene87834.t1 MTR_5g005920 31.065 338 211 12 1 322 1 332 1.59e-37 137
MS.gene87834.t1 MTR_6g065340 32.441 299 164 9 40 327 60 331 1.70e-37 137
MS.gene87834.t1 MTR_1g089310 34.043 235 134 5 72 301 114 332 1.64e-34 129
MS.gene87834.t1 MTR_1g089310 33.898 236 133 6 72 301 98 316 1.84e-34 129
MS.gene87834.t1 MTR_4g086470 33.788 293 177 10 38 324 36 317 1.12e-33 126
MS.gene87834.t1 MTR_3g012440 31.752 274 171 6 64 326 74 342 1.78e-33 126
MS.gene87834.t1 MTR_7g093950 28.896 308 186 7 38 325 53 347 3.27e-33 125
MS.gene87834.t1 MTR_3g450680 32.399 321 187 11 21 324 24 331 3.16e-31 120
MS.gene87834.t1 MTR_5g005850 35.714 224 126 7 1 213 1 217 2.62e-30 117
MS.gene87834.t1 MTR_1g105020 30.032 313 203 9 21 325 16 320 1.79e-29 115
MS.gene87834.t1 MTR_5g005900 29.796 245 151 8 4 238 3 236 4.26e-28 111
MS.gene87834.t1 MTR_8g040860 30.408 319 198 11 21 328 24 329 1.01e-27 110
MS.gene87834.t1 MTR_1g104930 40.642 187 102 5 21 204 20 200 5.80e-27 108
MS.gene87834.t1 MTR_6g022710 29.167 288 160 8 78 325 159 442 1.89e-25 106
MS.gene87834.t1 MTR_7g051020 33.962 318 184 14 21 324 20 325 3.50e-25 103
MS.gene87834.t1 MTR_1g104933 40.764 157 87 3 50 204 46 198 7.03e-22 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87834.t1 AT2G45600 54.688 320 133 4 14 329 9 320 1.46e-121 353
MS.gene87834.t1 AT2G45610 46.505 329 167 4 1 325 1 324 6.85e-103 305
MS.gene87834.t1 AT5G62180 44.379 338 165 9 1 327 1 326 2.45e-87 265
MS.gene87834.t1 AT1G68620 38.971 272 154 7 13 282 24 285 2.05e-52 176
MS.gene87834.t1 AT5G16080 37.201 293 173 5 21 309 36 321 4.24e-52 175
MS.gene87834.t1 AT5G06570 36.735 294 171 8 21 304 18 306 2.64e-40 144
MS.gene87834.t1 AT5G06570 36.735 294 171 8 21 304 18 306 2.64e-40 144
MS.gene87834.t1 AT5G06570 36.735 294 171 8 21 304 33 321 2.98e-40 144
MS.gene87834.t1 AT5G06570 36.735 294 171 8 21 304 33 321 2.98e-40 144
MS.gene87834.t1 AT5G23530 30.769 312 185 10 25 324 34 326 5.19e-38 138
MS.gene87834.t1 AT3G63010 31.003 329 182 10 25 328 37 345 2.37e-37 137
MS.gene87834.t1 AT1G47480 31.847 314 190 9 23 329 18 314 2.55e-37 136
MS.gene87834.t1 AT5G27320 30.897 301 169 8 25 303 37 320 1.50e-35 132
MS.gene87834.t1 AT3G48690 33.482 224 141 4 21 240 13 232 5.63e-35 130
MS.gene87834.t1 AT1G49640 35.789 190 113 3 21 208 14 196 5.44e-34 127
MS.gene87834.t1 AT3G48700 34.222 225 130 5 27 240 19 236 3.00e-33 125
MS.gene87834.t1 AT3G05120 30.584 291 174 7 25 299 37 315 1.07e-31 122
MS.gene87834.t1 AT1G49660 35.233 193 122 3 17 207 8 199 4.40e-30 117
MS.gene87834.t1 AT1G49650 34.225 187 120 3 21 206 69 253 1.23e-29 117
MS.gene87834.t1 AT1G19190 33.871 186 119 3 22 204 14 198 1.32e-29 115
MS.gene87834.t1 AT2G03550 36.066 183 113 2 22 204 14 192 5.64e-29 114
MS.gene87834.t1 AT5G14310 30.479 292 156 8 78 325 150 438 5.39e-27 110
MS.gene87834.t1 AT3G27320 28.014 282 124 5 48 250 58 339 2.83e-24 102
MS.gene87834.t1 AT3G27320 31.401 207 108 3 78 250 165 371 5.68e-24 102

Find 109 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTACAACAATCGGTATT+TGG 0.173341 8.4:-61989458 None:intergenic
AAAGGAGCTAGTGAAGATTT+TGG 0.262688 8.4:+61989968 MS.gene87834:CDS
TATATCACATCCGAAACTTT+TGG 0.276208 8.4:-61989873 None:intergenic
CTGCCGAGGTGCTTTGTTAA+TGG 0.290098 8.4:+61989915 MS.gene87834:CDS
GAAGAAGGCGGTGGATGGTT+TGG 0.298827 8.4:-61989333 None:intergenic
TTTAGATAAAACAGTTTGAT+TGG 0.326527 8.4:-61989262 None:intergenic
CTTGATTTCGAGGAATTCAT+AGG 0.332300 8.4:-61989175 None:intergenic
CATAAGATCACTTGCTGATA+AGG 0.336937 8.4:-61989799 None:intergenic
AAGAAGGCGGTGGATGGTTT+GGG 0.338643 8.4:-61989332 None:intergenic
GGCTACAACAATCGGTATTT+GGG 0.352791 8.4:-61989457 None:intergenic
AGGTGTTTGTGGTTGTGTTT+AGG 0.378698 8.4:-61989293 None:intergenic
TCGGAGGATGGTGGCACGGT+GGG 0.395070 8.4:-61989237 None:intergenic
CTTTGATAACTGCTTCTTGA+TGG 0.402538 8.4:+61989614 MS.gene87834:CDS
AAGCATTAATTGAGTACGTT+AGG 0.420290 8.4:+61990072 MS.gene87834:CDS
ATAAGCCCTTGGATCTTAAG+AGG 0.421207 8.4:-61989702 None:intergenic
GGGAGCTTAGCTGCGGAAGA+AGG 0.436075 8.4:-61989348 None:intergenic
GTATTGTAATCCAAAAGTTT+CGG 0.440947 8.4:+61989863 MS.gene87834:CDS
GGAAGGAGATGGAGGAAGGA+TGG 0.441614 8.4:-61989410 None:intergenic
TTAGATAAAACAGTTTGATT+GGG 0.442247 8.4:-61989261 None:intergenic
ATTAATGCTTGTGCCTTAGC+AGG 0.443498 8.4:-61990059 None:intergenic
TGGCTACGGTGGGGATCCCT+TGG 0.444444 8.4:+61989935 MS.gene87834:CDS
CAGGGTTGAGCTTGATTTCG+AGG 0.446420 8.4:-61989185 None:intergenic
AAAGTTTCGGATGTGATATA+CGG 0.451670 8.4:+61989876 MS.gene87834:CDS
ATCGGAGGATGGTGGCACGG+TGG 0.453890 8.4:-61989238 None:intergenic
ATTCTCTACTTCCATGGTGG+TGG 0.458108 8.4:+61989375 MS.gene87834:CDS
GATGCGAATGGAGGTGTTTG+TGG 0.458927 8.4:-61989304 None:intergenic
CGTTAGGAAATTTATTTCCT+CGG 0.460385 8.4:+61990088 MS.gene87834:CDS
TTTCTTGTGAGGGAACCGTC+AGG 0.462902 8.4:-61989204 None:intergenic
TATCAGCAAGTGATCTTATG+TGG 0.466303 8.4:+61989802 MS.gene87834:CDS
ATAAGATCACTTGCTGATAA+GGG 0.469063 8.4:-61989798 None:intergenic
CTACGGTGGGGATCCCTTGG+TGG 0.471238 8.4:+61989938 MS.gene87834:CDS
CCTCTCATTCTCTACTTCCA+TGG 0.472077 8.4:+61989369 MS.gene87834:CDS
GTGGGGATCCCTTGGTGGAT+AGG 0.478308 8.4:+61989943 MS.gene87834:CDS
GCAGCAGGGAGACGGTGCTC+TGG 0.489342 8.4:-61989501 None:intergenic
CGGAGGATGGTGGCACGGTG+GGG 0.494269 8.4:-61989236 None:intergenic
GACGTTGTCGTTTCTTGTGA+GGG 0.494899 8.4:-61989214 None:intergenic
AGGTGCTTTGTTAATGGCTA+CGG 0.498754 8.4:+61989921 MS.gene87834:CDS
GTGATATACGGTGAGAAGAT+CGG 0.499961 8.4:+61989888 MS.gene87834:CDS
CGGTATTTGGGCGGCGAAGG+TGG 0.500026 8.4:-61989445 None:intergenic
TTTGCCTGAGGGCAAAGATC+GGG 0.502336 8.4:+61989833 MS.gene87834:CDS
GAGCATTCATTATAAGCCCT+TGG 0.503256 8.4:-61989713 None:intergenic
ACAGCGTCATCATAGGCAGC+AGG 0.503505 8.4:-61989516 None:intergenic
AATCGGTATTTGGGCGGCGA+AGG 0.504867 8.4:-61989448 None:intergenic
CTCTCTCCTCTTAAGATCCA+AGG 0.508284 8.4:+61989696 MS.gene87834:CDS
TTCTTGATGGGAAGTAGTGC+AGG 0.508384 8.4:+61989627 MS.gene87834:CDS
TGAGGATGGGTTTCATGCTG+TGG 0.514157 8.4:+61990025 MS.gene87834:CDS
TCCCTTGGTGGATAGGCAAA+AGG 0.515897 8.4:+61989950 MS.gene87834:CDS
TGGTGGAAGGAGATGGAGGA+AGG 0.515934 8.4:-61989414 None:intergenic
TCAACTGAGGCTACAACAAT+CGG 0.516064 8.4:-61989465 None:intergenic
GAAGCTCGGATTCTGTCCTC+TGG 0.518185 8.4:-61989752 None:intergenic
ATCCAAGTGTCTCTGATCCA+TGG 0.519484 8.4:+61989574 MS.gene87834:CDS
TAAAACAGTTTGATTGGGAT+CGG 0.521222 8.4:-61989256 None:intergenic
TGAATCAACAGCGTCATCAT+AGG 0.525186 8.4:-61989523 None:intergenic
TTTGATAACTGCTTCTTGAT+GGG 0.528311 8.4:+61989615 MS.gene87834:CDS
TGCTTTGTTAATGGCTACGG+TGG 0.528480 8.4:+61989924 MS.gene87834:CDS
TGATCCCGATCTTTGCCCTC+AGG 0.528666 8.4:-61989837 None:intergenic
CTTTGCCTGAGGGCAAAGAT+CGG 0.530032 8.4:+61989832 MS.gene87834:CDS
AGATGGAGGAAGGATGGTAG+CGG 0.533188 8.4:-61989404 None:intergenic
ACAACATTGGTGGAAGGAGA+TGG 0.537016 8.4:-61989421 None:intergenic
TCCACGTTGTCTCTAATCCA+TGG 0.538847 8.4:-61989591 None:intergenic
GCTTTGTTAATGGCTACGGT+GGG 0.539699 8.4:+61989925 MS.gene87834:CDS
CATCATAGGCAGCAGGGAGA+CGG 0.539880 8.4:-61989509 None:intergenic
CTGCGGAAGAAGGCGGTGGA+TGG 0.542195 8.4:-61989338 None:intergenic
CCATGGAAGTAGAGAATGAG+AGG 0.543683 8.4:-61989369 None:intergenic
GGACGTTGTCGTTTCTTGTG+AGG 0.544412 8.4:-61989215 None:intergenic
ACGCTGTTGATTCACTGCTC+TGG 0.544781 8.4:+61989532 MS.gene87834:CDS
CGGCGAAGGTGGAACAACAT+TGG 0.547001 8.4:-61989434 None:intergenic
TTCTTGTGAGGGAACCGTCA+GGG 0.551838 8.4:-61989203 None:intergenic
TTGATTTCGAGGAATTCATA+GGG 0.554513 8.4:-61989174 None:intergenic
AGAAGATCGGACGGCTGCCG+AGG 0.559266 8.4:+61989901 MS.gene87834:CDS
GTTTGATTGGGATCGGAGGA+TGG 0.560295 8.4:-61989249 None:intergenic
GTGGGCTCTATCTTTGCCTG+AGG 0.562373 8.4:+61989821 MS.gene87834:CDS
CGAAGGTGGAACAACATTGG+TGG 0.568199 8.4:-61989431 None:intergenic
GGGATCGGAGGATGGTGGCA+CGG 0.570716 8.4:-61989241 None:intergenic
AAGGCGGTGGATGGTTTGGG+AGG 0.574865 8.4:-61989329 None:intergenic
TGGGCTCTATCTTTGCCTGA+GGG 0.574915 8.4:+61989822 MS.gene87834:CDS
GGAGGCACGTGGGGTGCACG+TGG 0.576950 8.4:+61989989 MS.gene87834:CDS
ATCGTTAATGAAACGAAGCT+CGG 0.583980 8.4:-61989766 None:intergenic
ATCCATGGATCAGAGACACT+TGG 0.585274 8.4:-61989576 None:intergenic
GTTTGGGAGGAAGATGCGAA+TGG 0.591093 8.4:-61989316 None:intergenic
GGAACTCTTTGATCCTGCTA+AGG 0.595599 8.4:+61990046 MS.gene87834:CDS
TGGGAGGAAGATGCGAATGG+AGG 0.596067 8.4:-61989313 None:intergenic
AACAGTTTGATTGGGATCGG+AGG 0.597036 8.4:-61989253 None:intergenic
GACGGTGCTCTGGTGTGAGA+CGG 0.599030 8.4:-61989491 None:intergenic
ATCAGCAAGTGATCTTATGT+GGG 0.600680 8.4:+61989803 MS.gene87834:CDS
TCTCTCCTCTTAAGATCCAA+GGG 0.605883 8.4:+61989697 MS.gene87834:CDS
GAGGAATTCATAGGGATCGA+TGG 0.607240 8.4:-61989166 None:intergenic
CTCATTCTCTACTTCCATGG+TGG 0.607938 8.4:+61989372 MS.gene87834:CDS
GGTAACATAGCGTATTTCGC+AGG 0.611649 8.4:+61989651 MS.gene87834:CDS
AGCTTAGCTGCGGAAGAAGG+CGG 0.614328 8.4:-61989345 None:intergenic
TCTTAAGAGGAGAGAGATCG+AGG 0.616358 8.4:-61989689 None:intergenic
CTTTGTTAATGGCTACGGTG+GGG 0.624764 8.4:+61989926 MS.gene87834:CDS
CAGCGTCATCATAGGCAGCA+GGG 0.627063 8.4:-61989515 None:intergenic
GGTGGAACAACATTGGTGGA+AGG 0.628176 8.4:-61989427 None:intergenic
GAAATCAAGCTCAACCCTGA+CGG 0.629353 8.4:+61989189 MS.gene87834:CDS
TTAGCTGCGGAAGAAGGCGG+TGG 0.632038 8.4:-61989342 None:intergenic
ACATTGGTGGAAGGAGATGG+AGG 0.648420 8.4:-61989418 None:intergenic
CATGGAAGTAGAGAATGAGA+GGG 0.650043 8.4:-61989368 None:intergenic
TGATTGGGATCGGAGGATGG+TGG 0.653749 8.4:-61989246 None:intergenic
GAATTCATAGGGATCGATGG+TGG 0.658016 8.4:-61989163 None:intergenic
AGCGGAAGAAACCACCACCA+TGG 0.663365 8.4:-61989386 None:intergenic
TACAACAATCGGTATTTGGG+CGG 0.668880 8.4:-61989454 None:intergenic
TTGATGGGAAGTAGTGCAGG+TGG 0.669706 8.4:+61989630 MS.gene87834:CDS
AATGAGAGGGAGCTTAGCTG+CGG 0.679381 8.4:-61989355 None:intergenic
TATACGGTGAGAAGATCGGA+CGG 0.716166 8.4:+61989892 MS.gene87834:CDS
TGTGAGACGGTGATCAACTG+AGG 0.747102 8.4:-61989478 None:intergenic
TAGCCATTAACAAAGCACCT+CGG 0.752093 8.4:-61989918 None:intergenic
TCCATGGATTAGAGACAACG+TGG 0.752565 8.4:+61989590 MS.gene87834:CDS
AGAGGACTAAGTATCAACCG+AGG 0.760941 8.4:-61990105 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGATAAAACAGTTTGATT+GGG - chr8.4:61989264-61989283 None:intergenic 20.0%
!! TTTAGATAAAACAGTTTGAT+TGG - chr8.4:61989265-61989284 None:intergenic 20.0%
! GTATTGTAATCCAAAAGTTT+CGG + chr8.4:61989863-61989882 MS.gene87834:CDS 25.0%
!!! ATAATGAATGCTCCATTTTT+TGG + chr8.4:61989723-61989742 MS.gene87834:CDS 25.0%
AAAGTTTCGGATGTGATATA+CGG + chr8.4:61989876-61989895 MS.gene87834:CDS 30.0%
AAGCATTAATTGAGTACGTT+AGG + chr8.4:61990072-61990091 MS.gene87834:CDS 30.0%
CGTTAGGAAATTTATTTCCT+CGG + chr8.4:61990088-61990107 MS.gene87834:CDS 30.0%
TAAAACAGTTTGATTGGGAT+CGG - chr8.4:61989259-61989278 None:intergenic 30.0%
TTGATTTCGAGGAATTCATA+GGG - chr8.4:61989177-61989196 None:intergenic 30.0%
! ATAAGATCACTTGCTGATAA+GGG - chr8.4:61989801-61989820 None:intergenic 30.0%
! TATATCACATCCGAAACTTT+TGG - chr8.4:61989876-61989895 None:intergenic 30.0%
! TTTGATAACTGCTTCTTGAT+GGG + chr8.4:61989615-61989634 MS.gene87834:CDS 30.0%
ATCAGCAAGTGATCTTATGT+GGG + chr8.4:61989803-61989822 MS.gene87834:CDS 35.0%
ATCGTTAATGAAACGAAGCT+CGG - chr8.4:61989769-61989788 None:intergenic 35.0%
CTTGATTTCGAGGAATTCAT+AGG - chr8.4:61989178-61989197 None:intergenic 35.0%
TATCAGCAAGTGATCTTATG+TGG + chr8.4:61989802-61989821 MS.gene87834:CDS 35.0%
! AAAGGAGCTAGTGAAGATTT+TGG + chr8.4:61989968-61989987 MS.gene87834:CDS 35.0%
! CATAAGATCACTTGCTGATA+AGG - chr8.4:61989802-61989821 None:intergenic 35.0%
! CTTTGATAACTGCTTCTTGA+TGG + chr8.4:61989614-61989633 MS.gene87834:CDS 35.0%
!!! AGTCTGTTTTTTGTGAGGAT+GGG + chr8.4:61990012-61990031 MS.gene87834:CDS 35.0%
!!! ATGAATGCTCCATTTTTTGG+TGG + chr8.4:61989726-61989745 MS.gene87834:CDS 35.0%
!!! TGAATGCTCCATTTTTTGGT+GGG + chr8.4:61989727-61989746 MS.gene87834:CDS 35.0%
AGGCTACAACAATCGGTATT+TGG - chr8.4:61989461-61989480 None:intergenic 40.0%
AGGTGTTTGTGGTTGTGTTT+AGG - chr8.4:61989296-61989315 None:intergenic 40.0%
ATAAGCCCTTGGATCTTAAG+AGG - chr8.4:61989705-61989724 None:intergenic 40.0%
ATTAATGCTTGTGCCTTAGC+AGG - chr8.4:61990062-61990081 None:intergenic 40.0%
CATGGAAGTAGAGAATGAGA+GGG - chr8.4:61989371-61989390 None:intergenic 40.0%
GAGCATTCATTATAAGCCCT+TGG - chr8.4:61989716-61989735 None:intergenic 40.0%
GGCTACAACAATCGGTATTT+GGG - chr8.4:61989460-61989479 None:intergenic 40.0%
GTGATATACGGTGAGAAGAT+CGG + chr8.4:61989888-61989907 MS.gene87834:CDS 40.0%
TACAACAATCGGTATTTGGG+CGG - chr8.4:61989457-61989476 None:intergenic 40.0%
TCAACTGAGGCTACAACAAT+CGG - chr8.4:61989468-61989487 None:intergenic 40.0%
TCTCTCCTCTTAAGATCCAA+GGG + chr8.4:61989697-61989716 MS.gene87834:CDS 40.0%
TGAATCAACAGCGTCATCAT+AGG - chr8.4:61989526-61989545 None:intergenic 40.0%
! AGGTGCTTTGTTAATGGCTA+CGG + chr8.4:61989921-61989940 MS.gene87834:CDS 40.0%
! TAGCCATTAACAAAGCACCT+CGG - chr8.4:61989921-61989940 None:intergenic 40.0%
!!! ATCGATGGTGGAGTTTTGTT+TGG - chr8.4:61989154-61989173 None:intergenic 40.0%
!!! ATGGTGGAGTTTTGTTTGGA+AGG - chr8.4:61989150-61989169 None:intergenic 40.0%
!!! GAATGCTCCATTTTTTGGTG+GGG + chr8.4:61989728-61989747 MS.gene87834:CDS 40.0%
!!! GAGTCTGTTTTTTGTGAGGA+TGG + chr8.4:61990011-61990030 MS.gene87834:CDS 40.0%
AACAGTTTGATTGGGATCGG+AGG - chr8.4:61989256-61989275 None:intergenic 45.0%
ACAACATTGGTGGAAGGAGA+TGG - chr8.4:61989424-61989443 None:intergenic 45.0%
ATCCAAGTGTCTCTGATCCA+TGG + chr8.4:61989574-61989593 MS.gene87834:CDS 45.0%
ATCCATGGATCAGAGACACT+TGG - chr8.4:61989579-61989598 None:intergenic 45.0%
ATTCTCTACTTCCATGGTGG+TGG + chr8.4:61989375-61989394 MS.gene87834:CDS 45.0%
CCATGGAAGTAGAGAATGAG+AGG - chr8.4:61989372-61989391 None:intergenic 45.0%
CCTCTCATTCTCTACTTCCA+TGG + chr8.4:61989369-61989388 MS.gene87834:CDS 45.0%
CTCATTCTCTACTTCCATGG+TGG + chr8.4:61989372-61989391 MS.gene87834:CDS 45.0%
CTCTCTCCTCTTAAGATCCA+AGG + chr8.4:61989696-61989715 MS.gene87834:CDS 45.0%
CTTTGTTAATGGCTACGGTG+GGG + chr8.4:61989926-61989945 MS.gene87834:CDS 45.0%
GAAATCAAGCTCAACCCTGA+CGG + chr8.4:61989189-61989208 MS.gene87834:CDS 45.0%
GAATTCATAGGGATCGATGG+TGG - chr8.4:61989166-61989185 None:intergenic 45.0%
GAGGAATTCATAGGGATCGA+TGG - chr8.4:61989169-61989188 None:intergenic 45.0%
GGAACTCTTTGATCCTGCTA+AGG + chr8.4:61990046-61990065 MS.gene87834:CDS 45.0%
GGTAACATAGCGTATTTCGC+AGG + chr8.4:61989651-61989670 MS.gene87834:CDS 45.0%
TATACGGTGAGAAGATCGGA+CGG + chr8.4:61989892-61989911 MS.gene87834:CDS 45.0%
TCCACGTTGTCTCTAATCCA+TGG - chr8.4:61989594-61989613 None:intergenic 45.0%
TCTTAAGAGGAGAGAGATCG+AGG - chr8.4:61989692-61989711 None:intergenic 45.0%
TTCTTGATGGGAAGTAGTGC+AGG + chr8.4:61989627-61989646 MS.gene87834:CDS 45.0%
! AGACACTTGGATTTTGCGCT+TGG - chr8.4:61989566-61989585 None:intergenic 45.0%
! GACACTTGGATTTTGCGCTT+GGG - chr8.4:61989565-61989584 None:intergenic 45.0%
! GACGTTGTCGTTTCTTGTGA+GGG - chr8.4:61989217-61989236 None:intergenic 45.0%
! GCTTTGTTAATGGCTACGGT+GGG + chr8.4:61989925-61989944 MS.gene87834:CDS 45.0%
! GGAGCTAGTGAAGATTTTGG+AGG + chr8.4:61989971-61989990 MS.gene87834:CDS 45.0%
! TCCTTTTGCCTATCCACCAA+GGG - chr8.4:61989954-61989973 None:intergenic 45.0%
! TGCTTTGTTAATGGCTACGG+TGG + chr8.4:61989924-61989943 MS.gene87834:CDS 45.0%
!! TCCATGGATTAGAGACAACG+TGG + chr8.4:61989590-61989609 MS.gene87834:CDS 45.0%
!! TGAAGATTTTGGAGGCACGT+GGG + chr8.4:61989979-61989998 MS.gene87834:CDS 45.0%
!!! CGTGGAGTCTGTTTTTTGTG+AGG + chr8.4:61990007-61990026 MS.gene87834:CDS 45.0%
AAGAAGGCGGTGGATGGTTT+GGG - chr8.4:61989335-61989354 None:intergenic 50.0%
AATGAGAGGGAGCTTAGCTG+CGG - chr8.4:61989358-61989377 None:intergenic 50.0%
ACATTGGTGGAAGGAGATGG+AGG - chr8.4:61989421-61989440 None:intergenic 50.0%
AGATGGAGGAAGGATGGTAG+CGG - chr8.4:61989407-61989426 None:intergenic 50.0%
CAGGGTTGAGCTTGATTTCG+AGG - chr8.4:61989188-61989207 None:intergenic 50.0%
CGAAGGTGGAACAACATTGG+TGG - chr8.4:61989434-61989453 None:intergenic 50.0%
CTCTGGACCCCACCAAAAAA+TGG - chr8.4:61989738-61989757 None:intergenic 50.0%
CTTTGCCTGAGGGCAAAGAT+CGG + chr8.4:61989832-61989851 MS.gene87834:CDS 50.0%
GGTGGAACAACATTGGTGGA+AGG - chr8.4:61989430-61989449 None:intergenic 50.0%
GTTTGATTGGGATCGGAGGA+TGG - chr8.4:61989252-61989271 None:intergenic 50.0%
GTTTGGGAGGAAGATGCGAA+TGG - chr8.4:61989319-61989338 None:intergenic 50.0%
TGGGCTCTATCTTTGCCTGA+GGG + chr8.4:61989822-61989841 MS.gene87834:CDS 50.0%
TGTGAGACGGTGATCAACTG+AGG - chr8.4:61989481-61989500 None:intergenic 50.0%
TTCTTGTGAGGGAACCGTCA+GGG - chr8.4:61989206-61989225 None:intergenic 50.0%
TTGATGGGAAGTAGTGCAGG+TGG + chr8.4:61989630-61989649 MS.gene87834:CDS 50.0%
TTTCTTGTGAGGGAACCGTC+AGG - chr8.4:61989207-61989226 None:intergenic 50.0%
TTTGCCTGAGGGCAAAGATC+GGG + chr8.4:61989833-61989852 MS.gene87834:CDS 50.0%
! CTCCTTTTGCCTATCCACCA+AGG - chr8.4:61989955-61989974 None:intergenic 50.0%
! CTGCCGAGGTGCTTTGTTAA+TGG + chr8.4:61989915-61989934 MS.gene87834:CDS 50.0%
! GGACGTTGTCGTTTCTTGTG+AGG - chr8.4:61989218-61989237 None:intergenic 50.0%
! TCCCTTGGTGGATAGGCAAA+AGG + chr8.4:61989950-61989969 MS.gene87834:CDS 50.0%
! TGAGGATGGGTTTCATGCTG+TGG + chr8.4:61990025-61990044 MS.gene87834:CDS 50.0%
!! ACGCTGTTGATTCACTGCTC+TGG + chr8.4:61989532-61989551 MS.gene87834:CDS 50.0%
!! GAAGATTTTGGAGGCACGTG+GGG + chr8.4:61989980-61989999 MS.gene87834:CDS 50.0%
!! GATGCGAATGGAGGTGTTTG+TGG - chr8.4:61989307-61989326 None:intergenic 50.0%
!! GTGAAGATTTTGGAGGCACG+TGG + chr8.4:61989978-61989997 MS.gene87834:CDS 50.0%
!!! CATTTTTTGGTGGGGTCCAG+AGG + chr8.4:61989736-61989755 MS.gene87834:CDS 50.0%
AATCGGTATTTGGGCGGCGA+AGG - chr8.4:61989451-61989470 None:intergenic 55.0%
ACAGCGTCATCATAGGCAGC+AGG - chr8.4:61989519-61989538 None:intergenic 55.0%
AGCGGAAGAAACCACCACCA+TGG - chr8.4:61989389-61989408 None:intergenic 55.0%
AGCTTAGCTGCGGAAGAAGG+CGG - chr8.4:61989348-61989367 None:intergenic 55.0%
CAGCGTCATCATAGGCAGCA+GGG - chr8.4:61989518-61989537 None:intergenic 55.0%
CATCATAGGCAGCAGGGAGA+CGG - chr8.4:61989512-61989531 None:intergenic 55.0%
CGGCGAAGGTGGAACAACAT+TGG - chr8.4:61989437-61989456 None:intergenic 55.0%
GAAGAAGGCGGTGGATGGTT+TGG - chr8.4:61989336-61989355 None:intergenic 55.0%
GAAGCTCGGATTCTGTCCTC+TGG - chr8.4:61989755-61989774 None:intergenic 55.0%
GGAAGGAGATGGAGGAAGGA+TGG - chr8.4:61989413-61989432 None:intergenic 55.0%
GTGGGCTCTATCTTTGCCTG+AGG + chr8.4:61989821-61989840 MS.gene87834:CDS 55.0%
TGATCCCGATCTTTGCCCTC+AGG - chr8.4:61989840-61989859 None:intergenic 55.0%
TGATTGGGATCGGAGGATGG+TGG - chr8.4:61989249-61989268 None:intergenic 55.0%
TGGGAGGAAGATGCGAATGG+AGG - chr8.4:61989316-61989335 None:intergenic 55.0%
TGGTGGAAGGAGATGGAGGA+AGG - chr8.4:61989417-61989436 None:intergenic 55.0%
GACGGTGCTCTGGTGTGAGA+CGG - chr8.4:61989494-61989513 None:intergenic 60.0%
GGGAGCTTAGCTGCGGAAGA+AGG - chr8.4:61989351-61989370 None:intergenic 60.0%
TTAGCTGCGGAAGAAGGCGG+TGG - chr8.4:61989345-61989364 None:intergenic 60.0%
! AAGGCGGTGGATGGTTTGGG+AGG - chr8.4:61989332-61989351 None:intergenic 60.0%
! GTGGGGATCCCTTGGTGGAT+AGG + chr8.4:61989943-61989962 MS.gene87834:CDS 60.0%
AGAAGATCGGACGGCTGCCG+AGG + chr8.4:61989901-61989920 MS.gene87834:CDS 65.0%
CGGTATTTGGGCGGCGAAGG+TGG - chr8.4:61989448-61989467 None:intergenic 65.0%
CTACGGTGGGGATCCCTTGG+TGG + chr8.4:61989938-61989957 MS.gene87834:CDS 65.0%
CTGCGGAAGAAGGCGGTGGA+TGG - chr8.4:61989341-61989360 None:intergenic 65.0%
TGGCTACGGTGGGGATCCCT+TGG + chr8.4:61989935-61989954 MS.gene87834:CDS 65.0%
! ATCGGAGGATGGTGGCACGG+TGG - chr8.4:61989241-61989260 None:intergenic 65.0%
! GGGATCGGAGGATGGTGGCA+CGG - chr8.4:61989244-61989263 None:intergenic 65.0%
! TCGGAGGATGGTGGCACGGT+GGG - chr8.4:61989240-61989259 None:intergenic 65.0%
GCAGCAGGGAGACGGTGCTC+TGG - chr8.4:61989504-61989523 None:intergenic 70.0%
! CGGAGGATGGTGGCACGGTG+GGG - chr8.4:61989239-61989258 None:intergenic 70.0%
! GGAGGCACGTGGGGTGCACG+TGG + chr8.4:61989989-61990008 MS.gene87834:CDS 75.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 61989132 61990121 61989132 ID=MS.gene87834
chr8.4 mRNA 61989132 61990121 61989132 ID=MS.gene87834.t1;Parent=MS.gene87834
chr8.4 exon 61989132 61990121 61989132 ID=MS.gene87834.t1.exon1;Parent=MS.gene87834.t1
chr8.4 CDS 61989132 61990121 61989132 ID=cds.MS.gene87834.t1;Parent=MS.gene87834.t1
Gene Sequence

>MS.gene87834

ATGGCAGAATCATCACCTTCCAAACAAAACTCCACCATCGATCCCTATGAATTCCTCGAAATCAAGCTCAACCCTGACGGTTCCCTCACAAGAAACGACAACGTCCCCACCGTGCCACCATCCTCCGATCCCAATCAAACTGTTTTATCTAAAGATATCATCCTAAACACAACCACAAACACCTCCATTCGCATCTTCCTCCCAAACCATCCACCGCCTTCTTCCGCAGCTAAGCTCCCTCTCATTCTCTACTTCCATGGTGGTGGTTTCTTCCGCTACCATCCTTCCTCCATCTCCTTCCACCAATGTTGTTCCACCTTCGCCGCCCAAATACCGATTGTTGTAGCCTCAGTTGATCACCGTCTCACACCAGAGCACCGTCTCCCTGCTGCCTATGATGACGCTGTTGATTCACTGCTCTGGCTCAGAGCCCAAGCGCAAAATCCAAGTGTCTCTGATCCATGGATTAGAGACAACGTGGACTTTGATAACTGCTTCTTGATGGGAAGTAGTGCAGGTGGTAACATAGCGTATTTCGCAGGTCTACGCGCTCTTGACCTCGATCTCTCTCCTCTTAAGATCCAAGGGCTTATAATGAATGCTCCATTTTTTGGTGGGGTCCAGAGGACAGAATCCGAGCTTCGTTTCATTAACGATTATATACTACCCTTATCAGCAAGTGATCTTATGTGGGCTCTATCTTTGCCTGAGGGCAAAGATCGGGATCACGTGTATTGTAATCCAAAAGTTTCGGATGTGATATACGGTGAGAAGATCGGACGGCTGCCGAGGTGCTTTGTTAATGGCTACGGTGGGGATCCCTTGGTGGATAGGCAAAAGGAGCTAGTGAAGATTTTGGAGGCACGTGGGGTGCACGTGGAGTCTGTTTTTTGTGAGGATGGGTTTCATGCTGTGGAACTCTTTGATCCTGCTAAGGCACAAGCATTAATTGAGTACGTTAGGAAATTTATTTCCTCGGTTGATACTTAG
Protein sequence

>MS.gene87834.t1

MAESSPSKQNSTIDPYEFLEIKLNPDGSLTRNDNVPTVPPSSDPNQTVLSKDIILNTTTNTSIRIFLPNHPPPSSAAKLPLILYFHGGGFFRYHPSSISFHQCCSTFAAQIPIVVASVDHRLTPEHRLPAAYDDAVDSLLWLRAQAQNPSVSDPWIRDNVDFDNCFLMGSSAGGNIAYFAGLRALDLDLSPLKIQGLIMNAPFFGGVQRTESELRFINDYILPLSASDLMWALSLPEGKDRDHVYCNPKVSDVIYGEKIGRLPRCFVNGYGGDPLVDRQKELVKILEARGVHVESVFCEDGFHAVELFDPAKAQALIEYVRKFISSVDT