AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88144

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88144.t1 MTR_4g031140 95.253 316 15 0 1 316 1 316 0.0 602
MS.gene88144.t1 MTR_4g030890 85.473 296 43 0 21 316 93 388 0.0 542
MS.gene88144.t1 MTR_3g094650 45.603 307 156 4 6 309 7 305 1.74e-93 281
MS.gene88144.t1 MTR_3g072190 45.574 305 153 4 11 309 4 301 8.54e-92 276
MS.gene88144.t1 MTR_8g076820 47.703 283 146 2 28 308 30 312 1.03e-90 274
MS.gene88144.t1 MTR_3g466200 44.551 312 160 5 11 316 8 312 8.44e-89 269
MS.gene88144.t1 MTR_2g029800 44.966 298 159 3 24 316 25 322 3.70e-88 268
MS.gene88144.t1 MTR_5g074970 44.872 312 160 4 1 307 3 307 4.72e-88 267
MS.gene88144.t1 MTR_2g029740 44.295 298 161 3 24 316 25 322 5.42e-87 266
MS.gene88144.t1 MTR_5g074860 44.620 316 157 6 12 316 9 317 1.85e-86 263
MS.gene88144.t1 MTR_5g021060 45.583 283 152 2 28 308 30 312 3.60e-86 263
MS.gene88144.t1 MTR_5g083860 44.625 307 160 3 6 309 9 308 4.41e-86 262
MS.gene88144.t1 MTR_2g028980 43.333 300 165 3 22 316 23 322 2.46e-85 261
MS.gene88144.t1 MTR_2g029750 43.624 298 163 3 24 316 25 322 2.80e-85 261
MS.gene88144.t1 MTR_7g093370 41.667 312 172 4 7 308 42 353 2.15e-84 259
MS.gene88144.t1 MTR_2g040000 45.704 291 150 3 25 309 26 314 6.76e-84 257
MS.gene88144.t1 MTR_4g122640 44.599 287 155 3 24 308 34 318 1.63e-83 256
MS.gene88144.t1 MTR_4g083710 43.269 312 162 6 7 309 2 307 1.70e-83 256
MS.gene88144.t1 MTR_3g466180 45.515 301 156 2 10 309 13 306 2.93e-83 255
MS.gene88144.t1 MTR_3g094670 44.156 308 161 4 4 308 5 304 4.83e-83 254
MS.gene88144.t1 MTR_1g101830 43.322 307 171 3 11 316 10 314 1.46e-82 253
MS.gene88144.t1 MTR_5g074760 42.453 318 166 6 9 316 3 313 1.64e-82 253
MS.gene88144.t1 MTR_4g029170 44.079 304 160 4 9 309 8 304 1.72e-82 253
MS.gene88144.t1 MTR_2g029815 42.384 302 167 3 14 308 11 312 2.42e-82 253
MS.gene88144.t1 MTR_7g026990 43.377 302 164 1 7 308 10 304 3.95e-82 252
MS.gene88144.t1 MTR_5g074740 43.910 312 161 5 12 316 9 313 4.17e-82 252
MS.gene88144.t1 MTR_3g094630 44.337 309 161 4 4 309 5 305 4.73e-81 249
MS.gene88144.t1 MTR_1g022970 45.139 288 155 2 25 309 43 330 1.09e-80 249
MS.gene88144.t1 MTR_4g029200 44.211 285 151 2 26 309 44 321 2.00e-80 248
MS.gene88144.t1 MTR_4g029190 43.771 297 156 4 16 308 33 322 6.76e-80 247
MS.gene88144.t1 MTR_2g084010 41.615 322 177 4 6 323 3 317 2.30e-79 245
MS.gene88144.t1 MTR_5g074710 42.138 318 170 5 6 316 3 313 3.41e-79 244
MS.gene88144.t1 MTR_2g029830 42.308 286 162 2 26 308 26 311 4.02e-79 245
MS.gene88144.t1 MTR_2g029560 42.230 296 166 3 26 316 22 317 5.19e-79 245
MS.gene88144.t1 MTR_2g084080 41.562 320 173 4 11 323 4 316 6.32e-79 244
MS.gene88144.t1 MTR_4g125940 40.379 317 181 4 8 319 8 321 8.08e-79 244
MS.gene88144.t1 MTR_1g054205 38.291 316 189 4 7 316 3 318 1.02e-78 243
MS.gene88144.t1 MTR_4g029180 44.828 290 148 5 32 316 31 313 1.13e-78 243
MS.gene88144.t1 MTR_2g029860 39.216 306 182 3 7 308 7 312 1.29e-78 244
MS.gene88144.t1 MTR_2g029820 41.275 298 170 3 24 316 25 322 1.50e-78 244
MS.gene88144.t1 MTR_5g049280 41.379 319 174 6 10 316 12 329 3.42e-78 243
MS.gene88144.t1 MTR_4g074995 42.384 302 147 6 16 309 9 291 6.52e-78 241
MS.gene88144.t1 MTR_7g072510 42.140 299 165 2 12 309 4 295 1.70e-77 240
MS.gene88144.t1 MTR_1g025980 41.914 303 172 4 8 308 3 303 2.00e-77 240
MS.gene88144.t1 MTR_2g084110 41.615 322 176 5 6 323 3 316 6.44e-77 238
MS.gene88144.t1 MTR_2g084020 40.373 322 181 4 6 323 3 317 7.64e-77 238
MS.gene88144.t1 MTR_2g084090 40.312 320 179 5 9 323 5 317 9.08e-77 238
MS.gene88144.t1 MTR_2g029910 41.176 289 166 3 24 308 26 314 1.14e-76 239
MS.gene88144.t1 MTR_5g017850 41.472 299 172 3 10 306 9 306 1.44e-76 238
MS.gene88144.t1 MTR_2g029850 40.127 314 183 3 24 332 25 338 1.56e-76 239
MS.gene88144.t1 MTR_3g467600 41.694 307 164 6 11 309 8 307 1.72e-76 238
MS.gene88144.t1 MTR_2g029730 43.007 286 160 2 26 308 23 308 1.96e-76 238
MS.gene88144.t1 MTR_5g014100 44.406 286 148 4 32 308 30 313 7.57e-76 236
MS.gene88144.t1 MTR_4g074990 40.984 305 153 5 9 309 7 288 1.44e-75 234
MS.gene88144.t1 MTR_2g084000 40.203 296 168 3 15 308 13 301 1.18e-74 233
MS.gene88144.t1 MTR_7g072480 42.282 298 164 2 12 308 8 298 1.28e-73 230
MS.gene88144.t1 MTR_3g072190 46.667 240 120 2 71 309 2 234 1.68e-73 228
MS.gene88144.t1 MTR_5g017860 40.134 299 176 3 10 306 9 306 3.23e-73 229
MS.gene88144.t1 MTR_1g115900 40.468 299 166 4 11 305 10 300 2.75e-72 227
MS.gene88144.t1 MTR_4g133800 41.463 287 158 6 31 315 44 322 1.16e-71 226
MS.gene88144.t1 MTR_0155s0040 39.550 311 170 6 14 316 7 307 4.03e-71 224
MS.gene88144.t1 MTR_4g125940 42.537 268 146 4 57 319 2 266 6.18e-71 222
MS.gene88144.t1 MTR_1g077000 38.871 319 176 6 7 316 11 319 7.37e-71 223
MS.gene88144.t1 MTR_8g075100 40.690 290 167 4 22 309 20 306 7.96e-71 223
MS.gene88144.t1 MTR_5g022870 39.604 303 179 4 8 308 2 302 1.95e-70 222
MS.gene88144.t1 MTR_4g046713 37.829 304 186 3 7 308 6 308 1.30e-69 220
MS.gene88144.t1 MTR_7g029030 38.585 311 182 5 10 316 7 312 1.68e-69 219
MS.gene88144.t1 MTR_4g074980 43.137 255 131 3 12 258 5 253 2.78e-69 217
MS.gene88144.t1 MTR_4g087965 39.252 321 163 9 9 305 12 324 2.80e-68 217
MS.gene88144.t1 MTR_4g074980 38.742 302 152 5 12 309 5 277 1.16e-67 214
MS.gene88144.t1 MTR_1g009750 36.709 316 187 6 13 316 6 320 1.77e-67 214
MS.gene88144.t1 MTR_5g016010 37.979 287 174 3 24 306 23 309 9.40e-67 213
MS.gene88144.t1 MTR_7g086820 38.676 287 158 5 26 306 18 292 2.43e-66 211
MS.gene88144.t1 MTR_3g092990 36.452 310 193 3 1 308 1 308 9.15e-66 210
MS.gene88144.t1 MTR_2g088770 37.662 308 186 6 5 309 4 308 1.64e-65 209
MS.gene88144.t1 MTR_7g107520 37.716 289 175 4 22 309 19 303 5.43e-65 208
MS.gene88144.t1 MTR_2g008710 40.143 279 161 4 10 287 9 282 8.02e-65 207
MS.gene88144.t1 MTR_2g437770 39.446 289 162 6 32 316 54 333 5.69e-64 206
MS.gene88144.t1 MTR_1g038680 42.321 293 162 6 31 316 32 324 7.56e-64 205
MS.gene88144.t1 MTR_8g062780 36.538 312 191 4 11 316 6 316 1.95e-63 204
MS.gene88144.t1 MTR_4g114210 36.825 315 185 7 13 319 7 315 3.49e-63 203
MS.gene88144.t1 MTR_5g074860 37.658 316 140 6 12 316 9 278 5.28e-63 202
MS.gene88144.t1 MTR_1g086320 38.125 320 191 5 11 323 13 332 2.37e-62 202
MS.gene88144.t1 MTR_7g086870 36.207 290 162 5 26 308 20 293 2.44e-62 201
MS.gene88144.t1 MTR_0286s0010 37.580 314 185 7 10 316 17 326 8.47e-62 200
MS.gene88144.t1 MTR_6g008075 37.580 314 185 7 10 316 17 326 8.47e-62 200
MS.gene88144.t1 MTR_1g086490 37.576 330 192 5 11 326 13 342 8.37e-61 198
MS.gene88144.t1 MTR_1g090760 36.013 311 193 5 12 316 12 322 2.60e-60 196
MS.gene88144.t1 MTR_4g031040 59.195 174 28 2 87 260 1 131 4.38e-60 189
MS.gene88144.t1 MTR_4g132490 34.228 298 190 3 23 316 24 319 1.63e-59 194
MS.gene88144.t1 MTR_5g033470 38.062 289 165 5 28 306 73 357 2.38e-59 195
MS.gene88144.t1 MTR_2g029830 40.756 238 138 2 74 308 6 243 2.78e-59 192
MS.gene88144.t1 MTR_6g043280 37.370 289 168 7 32 316 45 324 9.13e-59 192
MS.gene88144.t1 MTR_6g043460 35.161 310 179 8 12 308 10 310 2.85e-58 191
MS.gene88144.t1 MTR_6g043240 37.193 285 164 7 28 309 42 314 7.29e-58 191
MS.gene88144.t1 MTR_6g027440 34.516 310 197 4 10 319 3 306 1.79e-57 189
MS.gene88144.t1 MTR_2g067440 35.220 318 173 4 22 308 54 369 3.02e-56 187
MS.gene88144.t1 MTR_4g095450 35.052 291 180 4 20 306 19 304 3.07e-56 186
MS.gene88144.t1 MTR_1g009750 34.076 314 181 7 13 316 6 303 3.70e-56 185
MS.gene88144.t1 MTR_2g078280 35.583 326 176 5 16 308 64 388 1.06e-55 186
MS.gene88144.t1 MTR_4g127670 35.616 292 179 5 31 316 27 315 1.11e-55 184
MS.gene88144.t1 MTR_3g092990 34.516 310 188 4 1 308 1 297 1.41e-55 184
MS.gene88144.t1 MTR_2g077990 35.583 326 176 5 16 308 64 388 3.56e-54 182
MS.gene88144.t1 MTR_1g066380 33.217 286 181 3 26 307 25 304 6.08e-53 177
MS.gene88144.t1 MTR_2g078610 34.969 326 178 5 16 308 64 388 1.95e-52 178
MS.gene88144.t1 MTR_2g099175 33.333 288 181 4 28 309 36 318 7.20e-52 174
MS.gene88144.t1 MTR_1g066640 32.168 286 184 3 26 307 25 304 7.46e-52 174
MS.gene88144.t1 MTR_2g008160 36.424 302 180 8 24 319 20 315 1.03e-50 171
MS.gene88144.t1 MTR_4g132110 32.143 280 180 3 32 307 36 309 2.73e-50 171
MS.gene88144.t1 MTR_1g066710 32.491 277 177 4 26 298 25 295 2.98e-50 170
MS.gene88144.t1 MTR_1g066680 32.986 288 178 5 26 307 25 303 5.00e-50 169
MS.gene88144.t1 MTR_4g132110 30.573 314 195 6 11 307 7 314 4.66e-48 165
MS.gene88144.t1 MTR_2g008730 35.842 279 149 5 10 287 9 258 1.35e-47 162
MS.gene88144.t1 MTR_3g105790 33.022 321 198 8 5 316 2 314 3.27e-47 162
MS.gene88144.t1 MTR_2g067450 38.938 226 134 3 22 245 5 228 1.62e-45 157
MS.gene88144.t1 MTR_0147s0010 31.023 303 174 5 28 309 77 365 1.85e-42 151
MS.gene88144.t1 MTR_1g066380 33.333 231 144 3 72 298 3 227 5.03e-40 141
MS.gene88144.t1 MTR_3g072210 40.000 195 103 4 139 331 55 237 6.45e-39 138
MS.gene88144.t1 MTR_2g008160 40.805 174 99 3 24 197 20 189 9.06e-39 136
MS.gene88144.t1 MTR_3g072260 48.485 132 64 1 8 135 2 133 9.81e-39 134
MS.gene88144.t1 MTR_2g008160 32.119 302 158 8 24 319 20 280 8.88e-38 136
MS.gene88144.t1 MTR_5g074700 38.009 221 113 6 101 316 5 206 2.12e-36 130
MS.gene88144.t1 MTR_7g072490 35.897 234 90 4 74 307 2 175 1.55e-35 128
MS.gene88144.t1 MTR_2g029880 36.994 173 94 3 140 308 9 170 1.19e-30 115
MS.gene88144.t1 MTR_3g105790 34.361 227 136 6 99 316 16 238 1.59e-29 113
MS.gene88144.t1 MTR_7g086790 34.555 191 104 6 75 265 17 186 1.32e-24 99.4
MS.gene88144.t1 MTR_5g058120 35.616 146 82 3 164 308 7 141 6.24e-20 87.8
MS.gene88144.t1 MTR_2g077980 31.008 258 137 7 90 308 11 266 8.20e-20 88.2
MS.gene88144.t1 MTR_6g048160 55.556 72 28 2 66 137 21 88 2.70e-19 81.6
MS.gene88144.t1 MTR_2g078560 30.288 208 113 3 133 308 95 302 6.09e-19 86.3
MS.gene88144.t1 MTR_4g114220 47.619 84 34 2 54 137 29 102 4.17e-18 80.1
MS.gene88144.t1 MTR_1g089005 34.127 126 76 2 20 139 7 131 9.98e-17 76.6
MS.gene88144.t1 MTR_7g086810 32.500 120 55 2 26 145 4 97 5.40e-16 76.6
MS.gene88144.t1 MTR_7g086785 30.216 139 91 2 74 212 4 136 2.77e-13 66.6
MS.gene88144.t1 MTR_3g462850 34.328 134 78 5 192 316 9 141 3.22e-13 66.6
MS.gene88144.t1 MTR_3g107060 31.098 164 89 6 43 198 91 238 1.08e-12 68.2
MS.gene88144.t1 MTR_2g029930 33.333 108 43 3 14 106 1 94 6.33e-12 62.0
MS.gene88144.t1 MTR_4g012865 38.356 73 36 1 28 91 77 149 6.56e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88144.t1 AT2G22420 71.475 305 87 0 12 316 7 311 9.87e-168 470
MS.gene88144.t1 AT5G06720 43.949 314 164 4 15 316 12 325 2.94e-90 273
MS.gene88144.t1 AT2G18150 42.500 320 171 4 10 316 9 328 3.64e-89 271
MS.gene88144.t1 AT4G36430 46.290 283 150 2 28 308 30 312 1.22e-88 269
MS.gene88144.t1 AT5G06730 42.540 315 169 4 16 318 14 328 2.71e-88 269
MS.gene88144.t1 AT5G66390 45.230 283 153 2 28 308 33 315 9.67e-88 267
MS.gene88144.t1 AT5G19890 44.062 320 169 5 3 316 4 319 2.51e-87 266
MS.gene88144.t1 AT5G05340 42.904 303 159 4 23 319 25 319 3.15e-85 260
MS.gene88144.t1 AT2G18140 46.479 284 150 2 27 308 34 317 3.64e-85 260
MS.gene88144.t1 AT4G16270 46.021 289 152 4 31 316 53 340 3.83e-84 258
MS.gene88144.t1 AT3G50990 43.509 285 159 2 26 308 39 323 3.09e-83 256
MS.gene88144.t1 AT4G08780 42.574 303 167 4 21 316 17 319 4.85e-83 255
MS.gene88144.t1 AT2G38390 43.189 301 165 4 24 318 27 327 1.52e-82 254
MS.gene88144.t1 AT5G58400 43.548 310 164 4 3 308 5 307 2.37e-82 253
MS.gene88144.t1 AT4G08770 42.574 303 167 4 21 316 17 319 4.23e-82 253
MS.gene88144.t1 AT1G44970 44.948 287 155 2 26 309 43 329 6.11e-82 252
MS.gene88144.t1 AT5G19880 43.354 316 171 5 9 316 6 321 1.47e-81 251
MS.gene88144.t1 AT3G32980 43.986 291 158 3 23 308 26 316 4.98e-81 250
MS.gene88144.t1 AT2G38380 42.857 301 166 4 24 318 27 327 8.07e-81 249
MS.gene88144.t1 AT5G51890 41.214 313 180 3 6 316 4 314 1.86e-80 248
MS.gene88144.t1 AT3G49110 43.103 290 160 3 24 308 29 318 4.40e-80 248
MS.gene88144.t1 AT1G14540 40.594 303 172 3 10 310 3 299 2.66e-78 242
MS.gene88144.t1 AT3G49120 41.581 291 165 3 23 308 27 317 3.60e-78 243
MS.gene88144.t1 AT1G68850 38.889 324 180 5 11 316 4 327 1.25e-77 241
MS.gene88144.t1 AT1G49570 43.750 288 158 3 25 308 45 332 1.74e-77 241
MS.gene88144.t1 AT5G42180 40.000 305 180 3 8 311 3 305 4.47e-77 239
MS.gene88144.t1 AT5G58390 42.525 301 162 4 12 308 5 298 2.88e-76 237
MS.gene88144.t1 AT1G14550 40.000 320 176 7 13 323 8 320 4.54e-75 234
MS.gene88144.t1 AT2G35380 44.333 300 158 5 28 318 30 329 5.15e-75 234
MS.gene88144.t1 AT5G17820 37.700 313 182 6 7 316 3 305 8.48e-72 225
MS.gene88144.t1 AT5G17820 37.539 317 185 6 3 316 52 358 4.38e-71 225
MS.gene88144.t1 AT3G49960 39.404 302 178 4 10 306 8 309 2.14e-70 222
MS.gene88144.t1 AT4G33420 41.176 289 158 5 32 318 41 319 2.44e-68 217
MS.gene88144.t1 AT5G64120 38.312 308 172 7 13 308 9 310 5.20e-68 216
MS.gene88144.t1 AT5G39580 37.658 316 187 7 12 323 9 318 6.09e-68 216
MS.gene88144.t1 AT4G33420 41.176 289 158 5 32 318 88 366 1.12e-67 216
MS.gene88144.t1 AT4G37520 38.596 285 171 3 26 306 25 309 1.38e-67 215
MS.gene88144.t1 AT3G03670 36.278 317 190 4 7 316 2 313 1.88e-67 214
MS.gene88144.t1 AT5G67400 39.024 287 171 3 24 306 23 309 9.60e-67 213
MS.gene88144.t1 AT4G37530 38.966 290 173 3 21 306 20 309 1.13e-66 213
MS.gene88144.t1 AT2G41480 38.050 318 179 7 15 319 11 323 2.05e-66 212
MS.gene88144.t1 AT1G71695 40.000 285 160 5 28 308 44 321 2.73e-66 213
MS.gene88144.t1 AT1G05260 38.721 297 177 5 16 309 14 308 8.64e-66 210
MS.gene88144.t1 AT4G11290 36.615 325 198 7 6 323 2 325 1.70e-65 209
MS.gene88144.t1 AT3G01190 41.456 316 166 10 8 316 10 313 1.87e-65 209
MS.gene88144.t1 AT4G37520 37.895 285 170 4 26 306 25 306 1.45e-64 207
MS.gene88144.t1 AT3G21770 38.721 297 175 5 17 309 18 311 1.94e-64 207
MS.gene88144.t1 AT2G34060 38.690 336 173 12 8 316 9 338 8.12e-64 206
MS.gene88144.t1 AT1G77100 38.487 304 172 7 9 306 5 299 1.05e-63 205
MS.gene88144.t1 AT5G15180 39.604 303 170 7 28 323 32 328 9.20e-63 202
MS.gene88144.t1 AT1G05240 38.832 291 169 6 32 316 30 317 7.68e-62 200
MS.gene88144.t1 AT1G05250 38.832 291 169 6 32 316 30 317 7.68e-62 200
MS.gene88144.t1 AT3G28200 37.966 295 170 5 28 316 21 308 2.46e-61 198
MS.gene88144.t1 AT4G30170 36.552 290 168 5 25 306 24 305 2.88e-61 199
MS.gene88144.t1 AT4G17690 39.189 296 168 6 27 316 25 314 3.33e-61 198
MS.gene88144.t1 AT5G47000 38.095 315 181 6 11 316 13 322 8.82e-61 197
MS.gene88144.t1 AT4G37530 39.615 260 153 3 21 276 20 279 1.78e-60 195
MS.gene88144.t1 AT5G14130 34.185 313 181 5 7 306 10 310 2.01e-60 196
MS.gene88144.t1 AT5G14130 34.185 313 181 5 7 306 51 351 5.85e-60 197
MS.gene88144.t1 AT1G30870 39.116 294 165 7 32 319 55 340 9.34e-60 196
MS.gene88144.t1 AT1G24110 33.657 309 197 5 14 316 8 314 2.72e-59 194
MS.gene88144.t1 AT4G25980 37.329 292 173 5 23 308 21 308 2.84e-59 193
MS.gene88144.t1 AT2G18980 34.043 329 190 6 1 316 1 315 3.20e-59 193
MS.gene88144.t1 AT5G40150 38.989 277 161 3 32 305 36 307 3.71e-59 193
MS.gene88144.t1 AT3G17070 34.603 315 192 4 2 305 7 318 7.12e-57 187
MS.gene88144.t1 AT4G33870 34.194 310 167 3 32 305 72 380 2.31e-56 188
MS.gene88144.t1 AT5G64110 38.768 276 160 5 12 284 16 285 3.72e-56 186
MS.gene88144.t1 AT4G26010 36.949 295 169 7 26 316 20 301 4.33e-56 185
MS.gene88144.t1 AT4G26010 36.949 295 169 7 26 316 48 329 4.81e-56 186
MS.gene88144.t1 AT5G64100 34.356 326 185 9 10 316 8 323 8.35e-56 185
MS.gene88144.t1 AT4G21960 34.375 288 173 5 23 302 24 303 1.06e-55 184
MS.gene88144.t1 AT2G24800 36.242 298 181 5 26 319 29 321 4.65e-54 180
MS.gene88144.t1 AT2G39040 35.294 306 186 7 28 323 46 349 1.21e-53 179
MS.gene88144.t1 AT5G22410 37.037 297 172 7 28 316 28 317 3.01e-53 178
MS.gene88144.t1 AT1G34510 35.294 306 167 9 11 308 9 291 2.77e-52 175
MS.gene88144.t1 AT2G35380 42.739 241 129 5 87 318 1 241 3.32e-51 170
MS.gene88144.t1 AT2G37130 31.973 294 189 5 19 307 21 308 1.53e-50 171
MS.gene88144.t1 AT2G37130 32.740 281 178 5 32 307 3 277 5.19e-50 169
MS.gene88144.t1 AT4G31760 33.882 304 187 7 8 305 10 305 1.35e-49 168
MS.gene88144.t1 AT2G43480 34.982 283 170 5 32 306 39 315 2.94e-48 165
MS.gene88144.t1 AT5G24070 32.517 286 179 5 32 309 39 318 1.80e-45 158
MS.gene88144.t1 AT5G39580 38.916 203 115 4 12 214 9 202 3.33e-44 152
MS.gene88144.t1 AT3G17070 35.060 251 153 4 65 309 13 259 1.14e-42 149
MS.gene88144.t1 AT4G25980 42.197 173 96 3 23 195 66 234 2.95e-39 140
MS.gene88144.t1 AT2G24800 39.175 194 108 4 26 213 29 218 6.55e-34 125
MS.gene88144.t1 AT3G42570 35.789 95 60 1 100 193 53 147 1.26e-14 70.9
MS.gene88144.t1 AT4G08390 25.279 269 150 9 62 311 127 363 2.62e-13 70.5
MS.gene88144.t1 AT4G08390 25.279 269 150 9 62 311 127 363 2.62e-13 70.5
MS.gene88144.t1 AT4G08390 25.279 269 150 9 62 311 127 363 2.62e-13 70.5
MS.gene88144.t1 AT4G08390 25.279 269 150 9 62 311 126 362 2.73e-13 70.5

Find 54 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCAATTGATCCTGTATTT+AGG 0.134391 4.3:+69061374 MS.gene88144:CDS
ATAACTGATGCAACACTTCT+TGG 0.239498 4.3:-69059981 None:intergenic
TGTTGAAGGAATGTTGAAAT+TGG 0.241814 4.3:+69061609 MS.gene88144:CDS
CCTAATCTCACTTCCCAATT+AGG 0.252124 4.3:-69061136 None:intergenic
CAACCAAGTCCTTGAAATAT+TGG 0.258540 4.3:-69061480 None:intergenic
TGCAATTGATCCTGTATTTA+GGG 0.261821 4.3:+69061375 MS.gene88144:CDS
TGCAGACAGGAGGACCTAAT+TGG 0.285329 4.3:+69061122 MS.gene88144:intron
AACTATGCTTGGAGAGAAAT+TGG 0.290246 4.3:+69060332 MS.gene88144:CDS
CTCACAAACCCCTTTGTTTG+AGG 0.337581 4.3:-69061547 None:intergenic
TGAAGTTGTTGATGAGGTTA+AGG 0.359802 4.3:+69060386 MS.gene88144:CDS
GGAAGTGAGATTAGGAAGAT+TGG 0.383464 4.3:+69061144 MS.gene88144:CDS
AAGGACTTGGTTGGTGGAAG+GGG 0.412024 4.3:+69061490 MS.gene88144:CDS
TTGTGCTGATATCATAATCA+TGG 0.414358 4.3:+69060443 MS.gene88144:CDS
GTTGAAGGAATGTTGAAATT+GGG 0.420650 4.3:+69061610 MS.gene88144:CDS
CTAAATACAGGATCAATTGC+AGG 0.420661 4.3:-69061373 None:intergenic
TCAAGTTCTTCCCTAAATAC+AGG 0.427013 4.3:-69061385 None:intergenic
TTTCGATAACCAATATTTCA+AGG 0.438590 4.3:+69061471 MS.gene88144:CDS
CAAGGACTTGGTTGGTGGAA+GGG 0.442363 4.3:+69061489 MS.gene88144:CDS
GACAACTCTGCAACTTCACC+AGG 0.451206 4.3:-69061652 None:intergenic
GCAGACAGGAGGACCTAATT+GGG 0.460309 4.3:+69061123 MS.gene88144:intron
AAAGAGCTTGTAGCACTCTC+AGG 0.463139 4.3:+69061271 MS.gene88144:CDS
CCTAATTGGGAAGTGAGATT+AGG 0.463783 4.3:+69061136 MS.gene88144:CDS
TAACCAATATTTCAAGGACT+TGG 0.464692 4.3:+69061477 MS.gene88144:CDS
AGGGTCAGGCTTTCCGCTAT+CGG 0.466648 4.3:-69061353 None:intergenic
AGAGCAGTGGCATTAGATCT+TGG 0.483837 4.3:-69061214 None:intergenic
ACAGGATCAATTGCAGGGTC+AGG 0.489409 4.3:-69061367 None:intergenic
TCTTTATCTTGTCTTCAGAC+AGG 0.490611 4.3:-69061695 None:intergenic
GCTTTAGAGAAGGCTTGTCC+TGG 0.494063 4.3:+69060411 MS.gene88144:CDS
TCAAGGACTTGGTTGGTGGA+AGG 0.501873 4.3:+69061488 MS.gene88144:CDS
CAATATTTCAAGGACTTGGT+TGG 0.502030 4.3:+69061481 MS.gene88144:CDS
AATTTCTCTCCAAGCATAGT+TGG 0.513582 4.3:-69060330 None:intergenic
GTGGCATTAGATCTTGGACT+TGG 0.525131 4.3:-69061208 None:intergenic
ATCATTTGAAGTTGTTGATG+AGG 0.525248 4.3:+69060380 MS.gene88144:CDS
GATGTTGATCAAAATAAGAC+AGG 0.529807 4.3:+69061424 MS.gene88144:CDS
ACATCAGCGGATCTTCGACC+TGG 0.537774 4.3:+69059885 MS.gene88144:CDS
TATTTCAAGGACTTGGTTGG+TGG 0.538804 4.3:+69061484 MS.gene88144:CDS
TAATTTGTGAAGGGGTGTGA+TGG 0.542064 4.3:+69060285 MS.gene88144:intron
AAATCACAGGAGTTGCATCA+AGG 0.548807 4.3:-69061450 None:intergenic
GATGATACACCAACTATGCT+TGG 0.551588 4.3:+69060321 MS.gene88144:CDS
GGTTAAGGAGGCTTTAGAGA+AGG 0.553738 4.3:+69060401 MS.gene88144:CDS
AGTTGTTGATGAGGTTAAGG+AGG 0.556139 4.3:+69060389 MS.gene88144:CDS
TCCCTTTCATTGCAGACAGG+AGG 0.569641 4.3:+69061112 MS.gene88144:intron
GACTTGCAGTCTGATAAGCC+TGG 0.576693 4.3:+69061634 MS.gene88144:CDS
TCTTCAGACAGGATATGAGC+AGG 0.583752 4.3:-69061684 None:intergenic
CTCTCAGGATCACACTCTAT+CGG 0.590516 4.3:+69061286 MS.gene88144:CDS
TATTGGTTATCGAAAATCAC+AGG 0.593232 4.3:-69061463 None:intergenic
CATCAGCGGATCTTCGACCT+GGG 0.594622 4.3:+69059886 MS.gene88144:CDS
GAAGAGATTAATGAGAGCAG+TGG 0.625249 4.3:-69061227 None:intergenic
TAAATACAGGATCAATTGCA+GGG 0.640618 4.3:-69061372 None:intergenic
TGGAAGGGGATTTCTCAACT+CGG 0.657592 4.3:+69061504 MS.gene88144:CDS
TCAGCACAAGAAACAACACC+AGG 0.669733 4.3:-69060429 None:intergenic
CATAATCATAGTAACATCAG+CGG 0.678749 4.3:+69059872 MS.gene88144:CDS
CTATACAATCAATCCGATAG+CGG 0.681244 4.3:+69061340 MS.gene88144:CDS
GAAGATCAGAAACATAAACA+TGG 0.722748 4.3:-69059841 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAAAAAATAATAATA+GGG - chr4.3:69060194-69060213 None:intergenic 0.0%
!! TTTATTTAAAAAATAATAAT+AGG - chr4.3:69060195-69060214 None:intergenic 0.0%
!!! ATAATTGCAATAAAATTTTT+TGG + chr4.3:69060138-69060157 MS.gene88144:intron 10.0%
!!! TAATTTTATGATTTATGAAA+AGG + chr4.3:69060514-69060533 MS.gene88144:intron 10.0%
!!! TGATAAAATAAATCTATTTT+AGG + chr4.3:69060760-69060779 MS.gene88144:intron 10.0%
!!! TTTATAAAATGATTTTTCTT+TGG + chr4.3:69060248-69060267 MS.gene88144:intron 10.0%
!! AATGAAAGGGAAATAAAAAT+AGG - chr4.3:69061103-69061122 None:intergenic 20.0%
!! ATGAAAGGGAAATAAAAATA+GGG - chr4.3:69061102-69061121 None:intergenic 20.0%
!! CTAATTTATATGGACAATAT+TGG - chr4.3:69060893-69060912 None:intergenic 20.0%
! AGCTACAAATTAGATCAATA+TGG - chr4.3:69060839-69060858 None:intergenic 25.0%
! ATATGGACAATATTGGAAAA+GGG - chr4.3:69060886-69060905 None:intergenic 25.0%
! GGTAATGTGTCTAATTTATA+TGG - chr4.3:69060903-69060922 None:intergenic 25.0%
! TATATGGACAATATTGGAAA+AGG - chr4.3:69060887-69060906 None:intergenic 25.0%
! TTTCGATAACCAATATTTCA+AGG + chr4.3:69061471-69061490 MS.gene88144:CDS 25.0%
!!! ATGAGTTGTTTAATTTGTGA+AGG + chr4.3:69060275-69060294 MS.gene88144:intron 25.0%
!!! GTTGTTTTTCAATCATGTTT+CGG + chr4.3:69061317-69061336 MS.gene88144:CDS 25.0%
!!! TATGGTAAACATTTTAGCAT+TGG - chr4.3:69060821-69060840 None:intergenic 25.0%
!!! TGAGTTGTTTAATTTGTGAA+GGG + chr4.3:69060276-69060295 MS.gene88144:intron 25.0%
!!! TTTTTCAAAGCATTTGTTGA+AGG + chr4.3:69061595-69061614 MS.gene88144:CDS 25.0%
ACAGTTTGATCTCGAATTTA+AGG + chr4.3:69060977-69060996 MS.gene88144:intron 30.0%
CATAATCATAGTAACATCAG+CGG + chr4.3:69059872-69059891 MS.gene88144:CDS 30.0%
GAAGATCAGAAACATAAACA+TGG - chr4.3:69059844-69059863 None:intergenic 30.0%
GATGTTGATCAAAATAAGAC+AGG + chr4.3:69061424-69061443 MS.gene88144:CDS 30.0%
GTTGAAGGAATGTTGAAATT+GGG + chr4.3:69061610-69061629 MS.gene88144:CDS 30.0%
TAAATACAGGATCAATTGCA+GGG - chr4.3:69061375-69061394 None:intergenic 30.0%
TAACCAATATTTCAAGGACT+TGG + chr4.3:69061477-69061496 MS.gene88144:CDS 30.0%
TACCGAGAAGAAAATAGATT+TGG + chr4.3:69060919-69060938 MS.gene88144:intron 30.0%
TGCAATTGATCCTGTATTTA+GGG + chr4.3:69061375-69061394 MS.gene88144:CDS 30.0%
TGTTGAAGGAATGTTGAAAT+TGG + chr4.3:69061609-69061628 MS.gene88144:CDS 30.0%
! ATCATTTGAAGTTGTTGATG+AGG + chr4.3:69060380-69060399 MS.gene88144:CDS 30.0%
! CACCAAATCTATTTTCTTCT+CGG - chr4.3:69060924-69060943 None:intergenic 30.0%
! GGATCTCATTAATTTGAGAT+CGG - chr4.3:69061049-69061068 None:intergenic 30.0%
! TAACACTGAGCTTGTATTTT+TGG - chr4.3:69061252-69061271 None:intergenic 30.0%
! TATTGGTTATCGAAAATCAC+AGG - chr4.3:69061466-69061485 None:intergenic 30.0%
! TTGTGCTGATATCATAATCA+TGG + chr4.3:69060443-69060462 MS.gene88144:CDS 30.0%
!! GAGTTGTTTAATTTGTGAAG+GGG + chr4.3:69060277-69060296 MS.gene88144:intron 30.0%
!! TTCACTTTTCCTCAAACAAA+GGG + chr4.3:69061538-69061557 MS.gene88144:CDS 30.0%
!! TTTCACTTTTCCTCAAACAA+AGG + chr4.3:69061537-69061556 MS.gene88144:CDS 30.0%
!!! TTATTTTGATCAACATCTCG+AGG - chr4.3:69061421-69061440 None:intergenic 30.0%
AACTATGCTTGGAGAGAAAT+TGG + chr4.3:69060332-69060351 MS.gene88144:CDS 35.0%
AATTTCTCTCCAAGCATAGT+TGG - chr4.3:69060333-69060352 None:intergenic 35.0%
ATAACTGATGCAACACTTCT+TGG - chr4.3:69059984-69060003 None:intergenic 35.0%
CAACCAAGTCCTTGAAATAT+TGG - chr4.3:69061483-69061502 None:intergenic 35.0%
CTAAATACAGGATCAATTGC+AGG - chr4.3:69061376-69061395 None:intergenic 35.0%
CTATACAATCAATCCGATAG+CGG + chr4.3:69061340-69061359 MS.gene88144:CDS 35.0%
CTGCAATTGATCCTGTATTT+AGG + chr4.3:69061374-69061393 MS.gene88144:CDS 35.0%
TCAAGTTCTTCCCTAAATAC+AGG - chr4.3:69061388-69061407 None:intergenic 35.0%
TGGAGAAACACACAAAAGAT+TGG - chr4.3:69060801-69060820 None:intergenic 35.0%
TTGAATATGCAGTCTCAGTA+AGG - chr4.3:69061076-69061095 None:intergenic 35.0%
! CAATATTTCAAGGACTTGGT+TGG + chr4.3:69061481-69061500 MS.gene88144:CDS 35.0%
! CTCATTAATTTGAGATCGGA+TGG - chr4.3:69061045-69061064 None:intergenic 35.0%
! TGAAGTTGTTGATGAGGTTA+AGG + chr4.3:69060386-69060405 MS.gene88144:CDS 35.0%
!! TCACTTTTCCTCAAACAAAG+GGG + chr4.3:69061539-69061558 MS.gene88144:CDS 35.0%
!!! CATGTTTTTGAGTAATACCC+AGG - chr4.3:69059906-69059925 None:intergenic 35.0%
!!! CTGACAATTGTTTTAGCTTG+TGG - chr4.3:69059930-69059949 None:intergenic 35.0%
AAATCACAGGAGTTGCATCA+AGG - chr4.3:69061453-69061472 None:intergenic 40.0%
ATTTCCCTTTCATTGCAGAC+AGG + chr4.3:69061109-69061128 MS.gene88144:intron 40.0%
CCTAATCTCACTTCCCAATT+AGG - chr4.3:69061139-69061158 None:intergenic 40.0%
CCTAATTGGGAAGTGAGATT+AGG + chr4.3:69061136-69061155 MS.gene88144:CDS 40.0%
GAAGAGATTAATGAGAGCAG+TGG - chr4.3:69061230-69061249 None:intergenic 40.0%
GATGATACACCAACTATGCT+TGG + chr4.3:69060321-69060340 MS.gene88144:CDS 40.0%
GGAAGTGAGATTAGGAAGAT+TGG + chr4.3:69061144-69061163 MS.gene88144:CDS 40.0%
! AGTTGTTGATGAGGTTAAGG+AGG + chr4.3:69060389-69060408 MS.gene88144:CDS 40.0%
! TAATTTGTGAAGGGGTGTGA+TGG + chr4.3:69060285-69060304 MS.gene88144:intron 40.0%
! TATTTCAAGGACTTGGTTGG+TGG + chr4.3:69061484-69061503 MS.gene88144:CDS 40.0%
AAAGAGCTTGTAGCACTCTC+AGG + chr4.3:69061271-69061290 MS.gene88144:CDS 45.0%
AGAGCAGTGGCATTAGATCT+TGG - chr4.3:69061217-69061236 None:intergenic 45.0%
ATGCAGTCTCAGTAAGGATC+TGG - chr4.3:69061070-69061089 None:intergenic 45.0%
CTCTCAGGATCACACTCTAT+CGG + chr4.3:69061286-69061305 MS.gene88144:CDS 45.0%
GTGGCATTAGATCTTGGACT+TGG - chr4.3:69061211-69061230 None:intergenic 45.0%
TCAGCACAAGAAACAACACC+AGG - chr4.3:69060432-69060451 None:intergenic 45.0%
TCCTCCTGTCTGCAATGAAA+GGG - chr4.3:69061116-69061135 None:intergenic 45.0%
TCTTCAGACAGGATATGAGC+AGG - chr4.3:69061687-69061706 None:intergenic 45.0%
TGGAAGGGGATTTCTCAACT+CGG + chr4.3:69061504-69061523 MS.gene88144:CDS 45.0%
! CTCACAAACCCCTTTGTTTG+AGG - chr4.3:69061550-69061569 None:intergenic 45.0%
!! GGTTAAGGAGGCTTTAGAGA+AGG + chr4.3:69060401-69060420 MS.gene88144:CDS 45.0%
!!! TTTTTAAATAAAATAATGAT+AGG + chr4.3:69060203-69060222 MS.gene88144:intron 5.0%
ACAGGATCAATTGCAGGGTC+AGG - chr4.3:69061370-69061389 None:intergenic 50.0%
GACAACTCTGCAACTTCACC+AGG - chr4.3:69061655-69061674 None:intergenic 50.0%
GACTTGCAGTCTGATAAGCC+TGG + chr4.3:69061634-69061653 MS.gene88144:CDS 50.0%
GCAGACAGGAGGACCTAATT+GGG + chr4.3:69061123-69061142 MS.gene88144:intron 50.0%
GTCCTCCTGTCTGCAATGAA+AGG - chr4.3:69061117-69061136 None:intergenic 50.0%
TCCCTTTCATTGCAGACAGG+AGG + chr4.3:69061112-69061131 MS.gene88144:intron 50.0%
TGCAGACAGGAGGACCTAAT+TGG + chr4.3:69061122-69061141 MS.gene88144:intron 50.0%
!! AAGGACTTGGTTGGTGGAAG+GGG + chr4.3:69061490-69061509 MS.gene88144:CDS 50.0%
!! CAAGGACTTGGTTGGTGGAA+GGG + chr4.3:69061489-69061508 MS.gene88144:CDS 50.0%
!! GCTTTAGAGAAGGCTTGTCC+TGG + chr4.3:69060411-69060430 MS.gene88144:CDS 50.0%
!! TCAAGGACTTGGTTGGTGGA+AGG + chr4.3:69061488-69061507 MS.gene88144:CDS 50.0%
ACATCAGCGGATCTTCGACC+TGG + chr4.3:69059885-69059904 MS.gene88144:CDS 55.0%
AGGGTCAGGCTTTCCGCTAT+CGG - chr4.3:69061356-69061375 None:intergenic 55.0%
CATCAGCGGATCTTCGACCT+GGG + chr4.3:69059886-69059905 MS.gene88144:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 69059816 69061714 69059816 ID=MS.gene88144
chr4.3 mRNA 69059816 69061714 69059816 ID=MS.gene88144.t1;Parent=MS.gene88144
chr4.3 exon 69059816 69060034 69059816 ID=MS.gene88144.t1.exon1;Parent=MS.gene88144.t1
chr4.3 CDS 69059816 69060034 69059816 ID=cds.MS.gene88144.t1;Parent=MS.gene88144.t1
chr4.3 exon 69060297 69060488 69060297 ID=MS.gene88144.t1.exon2;Parent=MS.gene88144.t1
chr4.3 CDS 69060297 69060488 69060297 ID=cds.MS.gene88144.t1;Parent=MS.gene88144.t1
chr4.3 exon 69061127 69061714 69061127 ID=MS.gene88144.t1.exon3;Parent=MS.gene88144.t1
chr4.3 CDS 69061127 69061714 69061127 ID=cds.MS.gene88144.t1;Parent=MS.gene88144.t1
Gene Sequence

>MS.gene88144

ATGGTTCAAAACAAAACTAAAAGTACCATGTTTATGTTTCTGATCTTCATCATAAACATAATCATAGTAACATCAGCGGATCTTCGACCTGGGTATTACTCAAAAACATGTCCACAAGCTAAAACAATTGTCAGAGATGTTATGAGAAATGCTCTTAAAAAAGAACCAAGAAGTGTTGCATCAGTTATGAGATTTCAATTTCATGATTGCTTTGTTAATGTATGTTCTCTCTTTACTCTTTCTTACAATCAAAATTCTATGTTTTCAATCAGTTATTTTTTAGATTTATATATCTCTTTAATCTCTACAAATATTTTGTCACATAATTGCAATAAAATTTTTTGGTCAAAGATTTAAAATAAAATATGTAAAGCGCCCTATTATTATTTTTTAAATAAAATAATGATAGGAATTAAAATATATTTATTTTTATTTATAAAATGATTTTTCTTTGGCTGAATGAGTTGTTTAATTTGTGAAGGGGTGTGATGGTTCTGTGTTGCTTGATGATACACCAACTATGCTTGGAGAGAAATTGGCTCTTTCAAATATAAATTCACTCAGATCATTTGAAGTTGTTGATGAGGTTAAGGAGGCTTTAGAGAAGGCTTGTCCTGGTGTTGTTTCTTGTGCTGATATCATAATCATGGCTTCTAGAGATGCTGTAGCACTTGTTTGTATTTCTCTATATCTTACAATAATTTTATGATTTATGAAAAGGAAAAAAAAATTTACTAATGAATTTGACTCTTTTTTATTGTTTGTTTATTTACTCTTCATTATTTAAAAAAAATAAATATGACTCTTCTAGAAAATCAATAATTAGTATTTTAATCTTTTTATTGTATGTGCACATAATATTTACAATTGATTTATTAGTATTGCAAAAAAAAAATTTGATTTATTAGTTTGACAGTTGAGATTATTTATTTTATCACAGAAAGTGATAAAATAAATCTATTTTAGGTTTTCAAAATTATCACCAATCTTTTGTGTGTTTCTCCAATGCTAAAATGTTTACCATATTGATCTAATTTGTAGCTATCTTTTTTTGTTGAATTATTTTTCCCTTTTCCAATATTGTCCATATAAATTAGACACATTACCGAGAAGAAAATAGATTTGGTGCAAAAATTGTGTCGCATATAGTTTTTATTCTCAACAGTTTGATCTCGAATTTAAGGACGACGTCTTTTAAATCTTATTTTGTTATTGTGTAATCTGAGCCATCCGATCTCAAATTAATGAGATCCAGATCCTTACTGAGACTGCATATTCAAATTCCCTATTTTTATTTCCCTTTCATTGCAGACAGGAGGACCTAATTGGGAAGTGAGATTAGGAAGATTGGACAGCTTAACAGCAAGTCAAGATAACTCAAGTAATATCATGCCAAGTCCAAGATCTAATGCCACTGCTCTCATTAATCTCTTCCAAAAATACAAGCTCAGTGTTAAAGAGCTTGTAGCACTCTCAGGATCACACTCTATCGGCAAAGCTCGTTGTTTTTCAATCATGTTTCGGCTATACAATCAATCCGATAGCGGAAAGCCTGACCCTGCAATTGATCCTGTATTTAGGGAAGAACTTGACAAGCTATGTCCTCGAGATGTTGATCAAAATAAGACAGGAAACCTTGATGCAACTCCTGTGATTTTCGATAACCAATATTTCAAGGACTTGGTTGGTGGAAGGGGATTTCTCAACTCGGATCAAACACTTTTCACTTTTCCTCAAACAAAGGGGTTTGTGAGTTTGTTTAGTGAAGATCAAAGCGAGTTTTTCAAAGCATTTGTTGAAGGAATGTTGAAATTGGGTGACTTGCAGTCTGATAAGCCTGGTGAAGTTGCAGAGTTGTCAATGCTCGTCCTGCTCATATCCTGTCTGAAGACAAGATAA
Protein sequence

>MS.gene88144.t1

MVQNKTKSTMFMFLIFIINIIIVTSADLRPGYYSKTCPQAKTIVRDVMRNALKKEPRSVASVMRFQFHDCFVNGCDGSVLLDDTPTMLGEKLALSNINSLRSFEVVDEVKEALEKACPGVVSCADIIIMASRDAVALTGGPNWEVRLGRLDSLTASQDNSSNIMPSPRSNATALINLFQKYKLSVKELVALSGSHSIGKARCFSIMFRLYNQSDSGKPDPAIDPVFREELDKLCPRDVDQNKTGNLDATPVIFDNQYFKDLVGGRGFLNSDQTLFTFPQTKGFVSLFSEDQSEFFKAFVEGMLKLGDLQSDKPGEVAELSMLVLLISCLKTR