AlfalfaGEDB | MS.gene90408

M. sativa cultivar XinJiangDaYe / MS.gene90408

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90408.t1	XP_003595865.1	96.8	250	8	0	1	250	81	330	9.70E-142	512.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90408.t1	A2Q3J0	96.8	250	8	0	1	250	81	330	7.0e-142	512.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049346	MS.gene90408	0.805686	1.18E-49	-1.69E-46
MS.gene049356	MS.gene90408	0.800942	1.14E-48	-1.69E-46
MS.gene049758	MS.gene90408	0.818765	1.65E-52	-1.69E-46
MS.gene050301	MS.gene90408	0.867297	1.52E-65	-1.69E-46
MS.gene050529	MS.gene90408	0.804964	1.68E-49	-1.69E-46
MS.gene050670	MS.gene90408	0.8322	1.08E-55	-1.69E-46
MS.gene05101	MS.gene90408	0.801043	1.08E-48	-1.69E-46
MS.gene05105	MS.gene90408	0.83748	5.07E-57	-1.69E-46
MS.gene052077	MS.gene90408	0.808869	2.51E-50	-1.69E-46
MS.gene052188	MS.gene90408	0.835733	1.41E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90408.t1	MTR_2g062700	96.800	250	8	0	1	250	81	330	4.05e-180	498
MS.gene90408.t1	MTR_4g105140	38.075	239	139	3	8	246	93	322	2.66e-43	151

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90408.t1	AT5G44600	62.195	246	92	1	1	245	88	333	5.38e-107	312
MS.gene90408.t1	AT5G44590	59.274	248	100	1	1	247	74	321	1.11e-101	299
MS.gene90408.t1	AT5G44590	55.263	266	100	2	1	247	74	339	5.07e-97	288
MS.gene90408.t1	AT5G63100	40.756	238	129	6	8	243	94	321	1.79e-37	134

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Find 58 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGACTAATTCCTAC+TGG	0.444949	2.3:-31724867	MS.gene90408:CDS
AAACATACCTCTTGCAGCTG+AGG	0.563965	2.3:+31722193	None:intergenic
AAAGGTCCCATTGCTATCTT+AGG	0.249398	2.3:-31723624	MS.gene90408:CDS
AAAGTGGACTAATTCCTACT+GGG	0.641570	2.3:-31724866	MS.gene90408:intron
AAATAGACGCTTACTTGTCC+AGG	0.498402	2.3:+31720957	None:intergenic
AAATTCTCACCCGTTTCCTT+TGG	0.400929	2.3:+31720066	None:intergenic
AAGAGAATGCCAAAGGAAAC+GGG	0.525414	2.3:-31720075	MS.gene90408:CDS
AAGATAGCAATGGGACCTTT+TGG	0.339083	2.3:+31723627	None:intergenic
AAGTAACATACATACCCAGT+AGG	0.656319	2.3:+31724852	None:intergenic
AATTATCAAATGACGAGGCA+TGG	0.572264	2.3:-31721019	MS.gene90408:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAAAAGCTCATAGGATAG+GGG	+	chr2.3:31723470-31723489	None:intergenic	30.0%
AATCTTTGTTCTTTCAACAG+AGG	+	chr2.3:31723363-31723382	None:intergenic	30.0%
ACAGGAACTTATAAAAGATC+CGG	-	chr2.3:31723090-31723109	MS.gene90408:intron	30.0%
AGAAACAGAGAAAACAAAGT+GGG	+	chr2.3:31720015-31720034	None:intergenic	30.0%
AGTCCATTAGTTAGTTAGAT+TGG	+	chr2.3:31722520-31722539	None:intergenic	30.0%
ATACAATGAAAATGACTCAC+CGG	+	chr2.3:31722380-31722399	None:intergenic	30.0%
ATATATGAACCACACGATAA+AGG	+	chr2.3:31721121-31721140	None:intergenic	30.0%
ATTAATTGGACCAATGGTTA+TGG	-	chr2.3:31723649-31723668	MS.gene90408:CDS	30.0%
ATTGTATTCACTGTGTGATT+GGG	+	chr2.3:31720804-31720823	None:intergenic	30.0%
CTAATAAAAGCTCATAGGAT+AGG	+	chr2.3:31723472-31723491	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	31719951	31725064	31719951	ID=MS.gene90408
chr2.3	mRNA	31719951	31725064	31719951	ID=MS.gene90408.t1;Parent=MS.gene90408
chr2.3	exon	31725016	31725064	31725016	ID=MS.gene90408.t1.exon1;Parent=MS.gene90408.t1
chr2.3	CDS	31725016	31725064	31725016	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1
chr2.3	exon	31724867	31724919	31724867	ID=MS.gene90408.t1.exon2;Parent=MS.gene90408.t1
chr2.3	CDS	31724867	31724919	31724867	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1
chr2.3	exon	31723620	31723679	31723620	ID=MS.gene90408.t1.exon3;Parent=MS.gene90408.t1
chr2.3	CDS	31723620	31723679	31723620	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1
chr2.3	exon	31723428	31723505	31723428	ID=MS.gene90408.t1.exon4;Parent=MS.gene90408.t1
chr2.3	CDS	31723428	31723505	31723428	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1
chr2.3	exon	31722636	31722765	31722636	ID=MS.gene90408.t1.exon5;Parent=MS.gene90408.t1
chr2.3	CDS	31722636	31722765	31722636	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1
chr2.3	exon	31722201	31722253	31722201	ID=MS.gene90408.t1.exon6;Parent=MS.gene90408.t1
chr2.3	CDS	31722201	31722253	31722201	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1
chr2.3	exon	31720971	31721144	31720971	ID=MS.gene90408.t1.exon7;Parent=MS.gene90408.t1
chr2.3	CDS	31720971	31721144	31720971	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1
chr2.3	exon	31719951	31720106	31719951	ID=MS.gene90408.t1.exon8;Parent=MS.gene90408.t1
chr2.3	CDS	31719951	31720106	31719951	ID=cds.MS.gene90408.t1;Parent=MS.gene90408.t1

Gene Sequence

>MS.gene90408

ATGATTGTTGATACCCCTAAATCTACTATGCTTCTCCTTGATTCTTCTCGTACGACAACAACCCACTTTGTTTTCTCTGTTTCTATGTCTTAATTCTTCATTCAAGTTTCAAATTTTTCTTCATGCTTCAACTTTGTTGTTGCAGATAATGTTCATAGCATTCTTTATAAGGACAAAAAGTGGACTAATTCCTACTGGGTATGTATGTTACTTTCAAATATTTGTTTTTATTTTATCTATCTAGAGTTTTATGTATTTGCGTTTGTTACATTTTAAATACAATCATTAACTTACTTGACACAATAGGAGTTTATGATTTGAGAATTTTTTTTGGCATAACTGAATAAGCCTATTATCAGCAATGATGATAATGACACTGTATGTCTCATTGTCTAATTCTCTTACAATTTGGGTCGAATTTAATTCAACCCTACAAAACCGGCTCGACTCCAAACTTTGTAAGCATGCTTAGGCGGCTTTCGGCGGACCTCAATTAAGGTGTTGGAGGTTGTATTGAAGGTAACCCACATGCGCAATTAGGCGGCTTTGGGCGGACCTCAATTAAGGTGGAATTCGCAAAAGTTGTCAATTGTATTAATCTCGTTCTTGGGCGGAAGACAAGAATATAAATTTAGAATTCACTGTGAGAAAATGTAAGCAGAGGAAGTGAAAATGAGAGAATCTGAATGAATTGAGAGTGATTACATGAGTAGAATTTATAACTATTAGCTAGCTAGTATCAAGACAGTTTGTACCGTGAGAAGCTGTTACAGCTGCGAGTAGCAGCATCTGTTACTAGCGAAGTAGCTAGACTGTGATCCTTTGATGGGATCAGGATGATGGCCAAGCCCCCAATCACACAGTGAATACAATGACACAAGTACGGCAGCTAGTATATTCCTAATATATATAGCTGACATATTTAGTACTGTAAAACTAAAGTATAGGTGCAATAATCATATCTCATCATCATCATTTTACTTTAGTTTCTAAAATTCAGCTCCTAGTCAAAAAAAAAAAAAAAAATAATATTGTCAAGAACTCCTAGTCAAATTATAAGTTACTGTAAAGATGCTTCTTTTACTTGTTACACATGAAAGTAGTGAAATGAGAAGCTGACGATCGCTATTCCTTTAACCCCGTTGACATAATGTTAGAAATTTGACACCTTTATCGTGTGGTTCATATATGGTGTTACATTGATTTGTCTTCGGTTATCATATGATCTTTGAGAATGAAGATATTCACATACAACTCTATAATTTTTATCATTCCTAAATGTTGATACTTATAAGTTATGTAGCTGTATCTTATTTCTGCGTTGACATTTACATGATAGATGAATTATTCATCACAAGGGTTTCTGAACTTTTTGCATTAAACAGGATGAGTTTGCCAGCTTACCAGCCATTGTTCCAAAAGGTCCCATTGCTATCTTAGGTTTGGTAATTTCTTAATCTTAAGATGGAGTATATTATCTTGGTCAATTTATAAGGAATTGAATTCCTTAAATGTCAATTATGTTATAAGTAATATCATACTGTTTTTTAAATCTTTAGGGTGGTGGAACTGCTGCTCATCTGATGCTTGAATTGTGGCCGGCATTGCAACTCGAAGGCTGGGAGATTGATGACATTGTAAGTTGTAACATATGCTTCTTTTCTGTCATAAGATTCTTGTTAATTTACCACCTGAACTATTTGATGCGTCAGTTTTATTTTTCAATTCTATCTCTGCTATGGTGATGTTGAGCCGATAACTTTTTTAATTACATAAAACCGCAAGTTCTACAAGAAAGTTAATAGCAGATTGAGACTTTATAGTCAGCTATAACATTCGAGTAAAAATAAAATAACAAACATGAAATTTGTTCTTGGATATGATTAAGTATTTTTATCTGCTGTTGTGCTGTAAATTCAAATTGTCCACTAGTGCTTTGGAATTTGAGTATAGATTATAGAAGGTACTTTCATTGGTAGTCAAACTATAGCTGACATGGTAAAATTAAATAACTTGGTCTACATTCTCCAAGTCAGTCTTAATACCATGTTCATGTTCAAATACTCTACAATTTTTATGGTTTTCCCTTCATATCTAATAAATATTTTTTATATGAAGATGCCAGGTGCCTTTTTCTTCTGTTTTAGGCAATATGAATTTATGATCAATGCTTTCAATCAAATTCCAATGTCTTGTTGATTGTTATCTTACTATCATATTTGCACATTGATTAGATCCATAATGCGGATGTTCTCACTTCTCACCCAAATTTTATTTTCTCGGAAAACCAAATATTTAGTTGATCGATAAAGCAAGAGATTATTTTGGCTTATCTGATCTGGAGAAGACAAACAAAGATGGCGGCATTCTAAATGTTCATATTGGTGATGCCTTCATTCCATCAGAGGATTTGCACAGAAGATATGCCGGTGAGTCATTTTCATTGTATATTATCTTGTTTATAGAAATAGCTTATACATAAGCACTTATATGATAAATGATTAATTAAGTTGTTTATCCAAACGGGGCTTGTGTTTTTAACCAGTGCCCCTACCTAACTAGCTAACCAATCTAACTAACTAATGGACTATTGTTGTTCTTATTCCGCCACATCTTAACATAATGGAACGGTGAAGCACAATTCAACTGGTAACATTAATGCATCATTGAATGGTTGAGTGGACCACGTGAATGGATCCTTATTTTATGCAGTAGGAGTAAACCATACAGAAATCACCTTTCTCTTTGACTATTTAATGGGGTTATTATTCTGATAGTCTTAGCTAACTTATACATGTGAACAATTTCCAGGAATTGTGGTTGACTTGTTCTCTGACGGAAAAGTTTTACCTCAGCTGCAAGAGGTATGTTTCAGATTTGCAAGTTCTAGGTCATTATAAAATTGTTCTTGGAAAGATGACAACTTTTGGTCATTGTCGTTATCGTAACAGTCGTGTGAAATTTAACTTAACATCAATAATAATATAAATTGGAATTGGCCCTTTATATGTTTTTACTTGTTCTTCCTAGTAACTCAGCTATAAGCCAATTTTCTTCGTGAGATACAGTTTAGGTCATTCATTTATATGGTATAGGAAGATCAGAGTTTGTGGAACTCGTATACTCATGTGAGTTTTTGACAGGAACTTATAAAAGATCCGGTATATTTTGTTAATTGCAGGGTCGTTGTGTCTGTATATCTCTTCACATGATATGATCATGTAGAAAGCTCACATGAGAGGATCCAAATCTGAGGTTAATGGGAATAAAATATGGAACCAGACTCTAGATAGTCATCAGAAAACATGGTTGATATTATGGAAAAATAGAAAAGTGAAGATGGATGACAAACAAAAACAGCATAATTCCACTACTACAGTGGAAGTTACAGAAATCACAAGTTTTTCTGCCTCTGTTGAAAGAACAAAGATTAGGAATTATATTAAAAAAAATGTTATATATTGTTTTCTTGTGATTTACAATGTACCTTATCTTGATAACTGCATAAAAGGGCCCCCCCTATCCTATGAGCTTTTATTAGTTTGCAATCTATACTTCTATATAACAATTTAGTAATGCACAAACAGTTATTTTGGTGTTTGCCTCTTATTCGAAAATCAAGGTGTATTTGCCTATTACTTTCTCTAATTATGTTTCAACGTATTTCTCCTAGAACATTTATGAGCTTAAGCAAAAAAATTAATTGGACCAATGGTTATGGAATCATAATACAGAAATTAGTCTTGTAAATGTTCCAAAATAGAAGTTTGAGTCTAGCAACTTCTGCTTGTAATCTGCATAACTGATTAACTTGTTTTTTTTCCTTGAGAAATCAAAGGTATGAAAGTGATTAAAAAGTTAACTTTTATCATCGCAGGCATGGTTGCATTATGTTTGATAGTTCTTTATTTGTCTGACAGGTTAGTACTTGGTTGGAATTACATGATAGATTGATGGCCAATGGTCGTTTTATGGTGAACTGCGGCGGGATCGATGGGGTGGATGGAAGTACTGATCCAAAAAAATTATCAAATGACGAGGCATGGTTATTAAATGCTGCAATCAAAGCATTATCCAAAGCATTTCCTGGACAAGTAAGCGTCTATTTCTAGTTCTTCATTATTTCTTCCATTTCACTGTTATACTACTTCCTAAGAATATGAGCTAAACAAAATTTGTAATCTTTATATGGGATATAAAAAGCCAGAAAGTAAACAGATGCTAGTCCCTATTCTAACACATGAAGTTTTTGAAAAGAAACTTGTAATCTTTATATGAGATATAAGGGTAAGCATATAAGAGCACTCATGCAGGTTTGTAAATACAAAACGTTTTATTATTGGACCATTTTGATTTTCCAATTTAAATTGATTAGACATTGCATAGAAAAGTTTGTCATGTTTTTAAGTGAATCACTAACTTAGTTCTTGAAATTGTATGAGTCGAACAATTCAATCTCTGAAATTAATGAAATTCCAAAATAATCTATGAAACTAAAAAGAGTGCTGTCAATGTCAAATATCGGCCATGGCAGCACCTTGGCGGATATTGGTGGTGGCTTTTGATCTGTCCGCCATGCCCAATTTCAGCCGACACGTCGGGATTTTCGGCCATAATCCGATATGATGACGCCACAAAGCGGCCGGAATGGCAGGATTTTGGCTCTCTGCCATCGACAAAACTGACTAAAAACCTCGCTCCCATTAGTCCTTTTGGTCAGTTTATTTAGACCGGTAAAACGTCCCAAAAAGACTAATGCAATCAATGGCTTTCAATTTTAGTACAATTTTGAAATGTTAATTTCAGGGATCAAATTGTCTGACCCTTACAATTTTAGGGACTAAATTGATAACTAAATCAATACCTGTTGTATTAATACCAACTTCACATCCTTTCCTTTATTATGTGACTTTTTTAATGTCATATTTGACAAAGCTCGATCTGTTTTCATTTCTCAGCTATGTTGGAAGAGAATGCCAAAGGAAACGGGTGAGAATTTTATGGCACTTACAGGACCCTTACCTGATCTAAAATCTTGGTCTGCTAATGTCCCATCTCCTTTAAGCACAGGAGTGATGGATTGGAGACCTTGTGAAATAGTTTCTAGAATTTGA

Protein sequence

>MS.gene90408.t1

MIVDTPKSTMLLLDSSHNVHSILYKDKKWTNSYWDEFASLPAIVPKGPIAILGLGGGTAAHLMLELWPALQLEGWEIDDILIDKARDYFGLSDLEKTNKDGGILNVHIGDAFIPSEDLHRRYAGIVVDLFSDGKVLPQLQEVSTWLELHDRLMANGRFMVNCGGIDGVDGSTDPKKLSNDEAWLLNAAIKALSKAFPGQLCWKRMPKETGENFMALTGPLPDLKSWSANVPSPLSTGVMDWRPCEIVSRI