Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90411.t1 | XP_003598625.1 | 97.9 | 283 | 6 | 0 | 1 | 283 | 1 | 283 | 3.30E-114 | 421.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90411.t1 | Q9LH89 | 45.5 | 121 | 56 | 2 | 115 | 225 | 251 | 371 | 3.6e-24 | 113.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90411.t1 | G7IYV7 | 97.9 | 283 | 6 | 0 | 1 | 283 | 1 | 283 | 2.4e-114 | 421.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene90411 | 0.802018 | 6.85E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene90411 | 0.820393 | 7.02E-53 | -1.69E-46 |
| MS.gene049669 | MS.gene90411 | 0.802532 | 5.37E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene90411 | 0.80333 | 3.67E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene90411 | 0.810569 | 1.08E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene90411 | 0.810247 | 1.27E-50 | -1.69E-46 |
| MS.gene052464 | MS.gene90411 | 0.821604 | 3.70E-53 | -1.69E-46 |
| MS.gene052586 | MS.gene90411 | 0.807497 | 4.91E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene90411 | 0.806939 | 6.45E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene90411 | 0.801888 | 7.28E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene90411 | 0.811141 | 8.12E-51 | -1.69E-46 |
| MS.gene052965 | MS.gene90411 | -0.833572 | 4.94E-56 | -1.69E-46 |
| MS.gene054072 | MS.gene90411 | 0.801514 | 8.69E-49 | -1.69E-46 |
| MS.gene054083 | MS.gene90411 | 0.800061 | 1.72E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene90411 | 0.815083 | 1.11E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene90411 | 0.804451 | 2.15E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene90411 | 0.826442 | 2.71E-54 | -1.69E-46 |
| MS.gene055225 | MS.gene90411 | 0.805826 | 1.11E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene90411 | 0.882078 | 1.41E-70 | -1.69E-46 |
| MS.gene05595 | MS.gene90411 | 0.808706 | 2.72E-50 | -1.69E-46 |
| MS.gene056779 | MS.gene90411 | 0.801207 | 1.00E-48 | -1.69E-46 |
| MS.gene056873 | MS.gene90411 | 0.802379 | 5.77E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene90411 | 0.806262 | 8.96E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene90411 | 0.887731 | 1.10E-72 | -1.69E-46 |
| MS.gene058146 | MS.gene90411 | 0.816155 | 6.40E-52 | -1.69E-46 |
| MS.gene058223 | MS.gene90411 | -0.804702 | 1.90E-49 | -1.69E-46 |
| MS.gene059511 | MS.gene90411 | 0.851169 | 1.06E-60 | -1.69E-46 |
| MS.gene060011 | MS.gene90411 | 0.808419 | 3.13E-50 | -1.69E-46 |
| MS.gene060520 | MS.gene90411 | 0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene90411 | 0.816216 | 6.20E-52 | -1.69E-46 |
| MS.gene060850 | MS.gene90411 | 0.828883 | 7.02E-55 | -1.69E-46 |
| MS.gene060851 | MS.gene90411 | 0.844851 | 5.85E-59 | -1.69E-46 |
| MS.gene060852 | MS.gene90411 | 0.841718 | 4.01E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90411.t1 | MTR_3g017490 | 96.113 | 283 | 11 | 0 | 1 | 283 | 1 | 283 | 0.0 | 556 |
| MS.gene90411.t1 | MTR_8g038440 | 52.830 | 265 | 102 | 3 | 2 | 263 | 13 | 257 | 5.51e-87 | 260 |
| MS.gene90411.t1 | MTR_7g090230 | 63.816 | 152 | 54 | 1 | 110 | 260 | 273 | 424 | 2.30e-69 | 221 |
| MS.gene90411.t1 | MTR_1g051180 | 60.000 | 160 | 55 | 1 | 110 | 260 | 204 | 363 | 8.07e-67 | 212 |
| MS.gene90411.t1 | MTR_5g083110 | 53.061 | 147 | 67 | 2 | 114 | 260 | 94 | 238 | 4.26e-49 | 163 |
| MS.gene90411.t1 | MTR_3g465550 | 41.509 | 212 | 112 | 6 | 55 | 256 | 19 | 228 | 4.12e-47 | 157 |
| MS.gene90411.t1 | MTR_5g072400 | 41.711 | 187 | 100 | 3 | 81 | 260 | 69 | 253 | 9.49e-46 | 155 |
| MS.gene90411.t1 | MTR_3g071510 | 51.389 | 144 | 68 | 2 | 117 | 260 | 93 | 234 | 2.79e-45 | 153 |
| MS.gene90411.t1 | MTR_7g104720 | 45.946 | 148 | 78 | 1 | 113 | 260 | 259 | 404 | 1.40e-40 | 145 |
| MS.gene90411.t1 | MTR_1g090400 | 46.309 | 149 | 78 | 2 | 113 | 261 | 223 | 369 | 7.54e-40 | 142 |
| MS.gene90411.t1 | MTR_7g106500 | 45.513 | 156 | 74 | 3 | 115 | 261 | 126 | 279 | 8.55e-40 | 140 |
| MS.gene90411.t1 | MTR_8g099665 | 45.223 | 157 | 77 | 3 | 112 | 260 | 212 | 367 | 1.28e-36 | 134 |
| MS.gene90411.t1 | MTR_8g106900 | 45.161 | 155 | 80 | 2 | 112 | 261 | 120 | 274 | 2.43e-36 | 131 |
| MS.gene90411.t1 | MTR_7g010090 | 44.242 | 165 | 73 | 3 | 115 | 260 | 267 | 431 | 3.63e-35 | 131 |
| MS.gene90411.t1 | MTR_6g011640 | 41.618 | 173 | 81 | 6 | 108 | 260 | 224 | 396 | 1.42e-34 | 129 |
| MS.gene90411.t1 | MTR_3g030520 | 38.994 | 159 | 79 | 4 | 121 | 261 | 141 | 299 | 9.49e-25 | 100 |
| MS.gene90411.t1 | MTR_5g048870 | 36.893 | 103 | 60 | 2 | 102 | 199 | 54 | 156 | 1.21e-12 | 64.7 |
| MS.gene90411.t1 | MTR_7g079015 | 34.066 | 91 | 53 | 2 | 155 | 238 | 1 | 91 | 6.83e-11 | 58.5 |
| MS.gene90411.t1 | MTR_1g095960 | 31.068 | 103 | 63 | 3 | 144 | 238 | 16 | 118 | 7.89e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90411.t1 | AT5G13810 | 55.303 | 264 | 97 | 4 | 6 | 261 | 23 | 273 | 3.42e-95 | 282 |
| MS.gene90411.t1 | AT3G57070 | 43.902 | 246 | 124 | 5 | 20 | 260 | 179 | 415 | 1.58e-55 | 185 |
| MS.gene90411.t1 | AT2G41330 | 55.828 | 163 | 70 | 2 | 100 | 260 | 239 | 401 | 1.01e-54 | 182 |
| MS.gene90411.t1 | AT5G58530 | 45.000 | 200 | 94 | 5 | 75 | 261 | 70 | 266 | 7.79e-50 | 166 |
| MS.gene90411.t1 | AT5G39865 | 48.780 | 164 | 66 | 6 | 115 | 260 | 225 | 388 | 2.09e-42 | 150 |
| MS.gene90411.t1 | AT5G06470 | 41.618 | 173 | 86 | 4 | 101 | 261 | 70 | 239 | 2.07e-40 | 140 |
| MS.gene90411.t1 | AT3G28850 | 42.614 | 176 | 71 | 3 | 115 | 260 | 251 | 426 | 1.49e-38 | 140 |
| MS.gene90411.t1 | AT1G32760 | 49.689 | 161 | 73 | 4 | 109 | 261 | 154 | 314 | 2.24e-38 | 137 |
| MS.gene90411.t1 | AT4G10630 | 46.584 | 161 | 74 | 4 | 113 | 261 | 174 | 334 | 2.26e-38 | 138 |
| MS.gene90411.t1 | AT3G11773 | 46.479 | 142 | 73 | 3 | 120 | 261 | 12 | 150 | 3.90e-36 | 127 |
| MS.gene90411.t1 | AT5G03870 | 44.667 | 150 | 82 | 1 | 113 | 261 | 235 | 384 | 2.57e-35 | 130 |
| MS.gene90411.t1 | AT1G64500 | 43.421 | 152 | 78 | 3 | 117 | 260 | 214 | 365 | 3.86e-34 | 127 |
| MS.gene90411.t1 | AT5G01420 | 43.333 | 150 | 82 | 3 | 113 | 261 | 254 | 401 | 7.65e-32 | 122 |
| MS.gene90411.t1 | AT3G11773 | 47.321 | 112 | 56 | 3 | 150 | 261 | 92 | 200 | 5.41e-26 | 102 |
Find 63 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGGTTTAGGGTTT+GGG | 0.218316 | 3.1:+10764876 | MS.gene90411:CDS |
| TGTCCTTGTTGCGCCTGTTC+TGG | 0.268180 | 3.1:+10766312 | MS.gene90411:CDS |
| CTGCCTCAAGTGTTCGTTAG+AGG | 0.365217 | 3.1:+10766063 | MS.gene90411:CDS |
| CCACGTGCGGCTTCCAAGTT+AGG | 0.365963 | 3.1:+10764709 | MS.gene90411:CDS |
| ATGAAGCGGGGATGTTGTTT+CGG | 0.377055 | 3.1:+10764761 | MS.gene90411:CDS |
| TGCTTTCAGAAAAGAATTGC+AGG | 0.391887 | 3.1:+10764927 | MS.gene90411:CDS |
| ATTAAGTCTCTATTTGAAAC+TGG | 0.396574 | 3.1:+10766111 | MS.gene90411:CDS |
| CTTGGAAGCCGCACGTGGTT+CGG | 0.416891 | 3.1:-10764704 | None:intergenic |
| TTGAAACTGGTGAATTGAAA+AGG | 0.417136 | 3.1:+10766124 | MS.gene90411:CDS |
| TTAGGTCAGAAGCCGCGTTC+TGG | 0.417750 | 3.1:+10764727 | MS.gene90411:CDS |
| GGGGATGTTGTTTCGGTTGG+CGG | 0.419111 | 3.1:+10764768 | MS.gene90411:CDS |
| TGATGAAAGAGATGTTTCTA+TGG | 0.421139 | 3.1:+10764900 | MS.gene90411:CDS |
| CGGTCTAGAAATTCGTTGAA+TGG | 0.435296 | 3.1:-10764526 | None:intergenic |
| AGCGGGGATGTTGTTTCGGT+TGG | 0.440075 | 3.1:+10764765 | MS.gene90411:CDS |
| TCAGAAGCCGCGTTCTGGTT+CGG | 0.442103 | 3.1:+10764732 | MS.gene90411:CDS |
| GCCGCACGTGGTTCGGAAGA+AGG | 0.443209 | 3.1:-10764697 | None:intergenic |
| AACAAAGCCAGGCTTCATCT+TGG | 0.443746 | 3.1:-10766163 | None:intergenic |
| ACAAAGCCAGGCTTCATCTT+GGG | 0.451900 | 3.1:-10766162 | None:intergenic |
| ACGCGGCTTCTGACCTAACT+TGG | 0.455974 | 3.1:-10764722 | None:intergenic |
| AAGCAAATTCTACGGTTCAA+TGG | 0.458730 | 3.1:+10764561 | MS.gene90411:CDS |
| AGGGATAAGAAGAACGTTTG+AGG | 0.460025 | 3.1:+10764831 | MS.gene90411:CDS |
| CAACTTTCGCAAACAAAGCC+AGG | 0.474869 | 3.1:-10766174 | None:intergenic |
| ACAGAACATCATTCCAGAAC+AGG | 0.474894 | 3.1:-10766325 | None:intergenic |
| ATTGTTGCTGCAGTCTGTGA+TGG | 0.475824 | 3.1:+10766023 | MS.gene90411:intron |
| GCGAAAGTTGTGGCGATGCT+AGG | 0.476444 | 3.1:+10766187 | MS.gene90411:CDS |
| ATCATCTCTACGTGGAAGAA+TGG | 0.484954 | 3.1:+10764594 | MS.gene90411:CDS |
| GTAGAATTTGCTTAACGAAC+CGG | 0.485771 | 3.1:-10764551 | None:intergenic |
| AGGGTTGTTGAAAAGATGCT+TGG | 0.515319 | 3.1:+10766263 | MS.gene90411:CDS |
| ACCTTCTTCCGAACCACGTG+CGG | 0.515628 | 3.1:+10764696 | MS.gene90411:CDS |
| TGCTTGGAGTGCAATGAGAA+TGG | 0.530091 | 3.1:+10766279 | MS.gene90411:CDS |
| AACGAATTTCTAGACCGGTC+CGG | 0.532633 | 3.1:+10764532 | MS.gene90411:CDS |
| GTGAGAATTGCAGTGGGAGT+AGG | 0.533959 | 3.1:+10766220 | MS.gene90411:CDS |
| GGCTTTGTTTGCGAAAGTTG+TGG | 0.541080 | 3.1:+10766177 | MS.gene90411:CDS |
| ATTTGCTTAACGAACCGGAC+CGG | 0.549932 | 3.1:-10764546 | None:intergenic |
| GGTTGGCGGATGCTGATGAT+CGG | 0.555952 | 3.1:+10764782 | MS.gene90411:CDS |
| GGTTCGGAAGAAGATGAAGC+GGG | 0.564755 | 3.1:+10764748 | MS.gene90411:CDS |
| TGTATTTGACGAGTTTGAGA+GGG | 0.565359 | 3.1:+10764812 | MS.gene90411:CDS |
| GTTAGAGGAAAGTACATTGG+TGG | 0.572212 | 3.1:+10766078 | MS.gene90411:CDS |
| TTGTTGCTGCAGTCTGTGAT+GGG | 0.579187 | 3.1:+10766024 | MS.gene90411:intron |
| GGTTCGTTAAGCAAATTCTA+CGG | 0.596106 | 3.1:+10764553 | MS.gene90411:CDS |
| TTCGTTAGAGGAAAGTACAT+TGG | 0.597968 | 3.1:+10766075 | MS.gene90411:CDS |
| TCTTCTTCCGAACCAGAACG+CGG | 0.600432 | 3.1:-10764739 | None:intergenic |
| ACGTGTGCATCGTGTTTGAT+CGG | 0.601162 | 3.1:-10764480 | None:intergenic |
| GTGTATTTGACGAGTTTGAG+AGG | 0.605361 | 3.1:+10764811 | MS.gene90411:CDS |
| CATTCAACGAATTTCTAGAC+CGG | 0.610493 | 3.1:+10764527 | MS.gene90411:CDS |
| CTCCCACTGCAATTCTCACA+AGG | 0.613824 | 3.1:-10766216 | None:intergenic |
| TACCTTGTGAGAATTGCAGT+GGG | 0.615095 | 3.1:+10766214 | MS.gene90411:CDS |
| ATACCTTGTGAGAATTGCAG+TGG | 0.616068 | 3.1:+10766213 | MS.gene90411:CDS |
| AAATTATTCGATGAGGACGA+AGG | 0.616456 | 3.1:+10766243 | MS.gene90411:CDS |
| TGGTTCGGAAGAAGATGAAG+CGG | 0.617340 | 3.1:+10764747 | MS.gene90411:CDS |
| AATTATTCGATGAGGACGAA+GGG | 0.626444 | 3.1:+10766244 | MS.gene90411:CDS |
| ATTCCAGAACAGGCGCAACA+AGG | 0.629811 | 3.1:-10766315 | None:intergenic |
| GGATGCTGATGATCGGATTG+TGG | 0.634382 | 3.1:+10764789 | MS.gene90411:CDS |
| CCTAACTTGGAAGCCGCACG+TGG | 0.637777 | 3.1:-10764709 | None:intergenic |
| GAATTGAAAAGGATTCTCGA+AGG | 0.645661 | 3.1:+10766135 | MS.gene90411:CDS |
| GCTGCAGTCTGTGATGGGTG+AGG | 0.646757 | 3.1:+10766029 | MS.gene90411:intron |
| TTTCCTCTAACGAACACTTG+AGG | 0.653351 | 3.1:-10766066 | None:intergenic |
| GCAATGAGAATGGACTTGTA+AGG | 0.683440 | 3.1:+10766289 | MS.gene90411:CDS |
| TTCTGTGAGTATGAAAACGA+GGG | 0.688210 | 3.1:+10766342 | MS.gene90411:CDS |
| GTTCGGAAGAAGATGAAGCG+GGG | 0.708724 | 3.1:+10764749 | MS.gene90411:CDS |
| GTTCTGTGAGTATGAAAACG+AGG | 0.730092 | 3.1:+10766341 | MS.gene90411:CDS |
| GAGTAGGAAATTATTCGATG+AGG | 0.731014 | 3.1:+10766236 | MS.gene90411:CDS |
| TCAATGAAATCATCTCTACG+TGG | 0.778466 | 3.1:+10764586 | MS.gene90411:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAAAACTATGTTTTATAT+TGG | - | chr3.1:10765943-10765962 | None:intergenic | 10.0% |
| !!! | AATATTAACAAGTTTTCAAA+AGG | - | chr3.1:10765878-10765897 | None:intergenic | 15.0% |
| !!! | TTACAATTTTTTTCAACTTA+TGG | + | chr3.1:10765294-10765313 | MS.gene90411:intron | 15.0% |
| !! | AAAATGAACAAGAATAAAGA+AGG | - | chr3.1:10764960-10764979 | None:intergenic | 20.0% |
| !! | AATTGTAACCATCTTTAAAT+CGG | - | chr3.1:10765282-10765301 | None:intergenic | 20.0% |
| !! | GGAAATATTTAATGCATATT+TGG | + | chr3.1:10764991-10765010 | MS.gene90411:intron | 20.0% |
| !!! | AATTTTTACCGATTTAAAGA+TGG | + | chr3.1:10765271-10765290 | MS.gene90411:intron | 20.0% |
| ! | AACATGCATTAAGAAAATTG+TGG | - | chr3.1:10765100-10765119 | None:intergenic | 25.0% |
| ! | AATTCAGCAAAATCAATATG+TGG | - | chr3.1:10765574-10765593 | None:intergenic | 25.0% |
| ! | ACAAAAAATCGTATGTATGT+CGG | - | chr3.1:10765211-10765230 | None:intergenic | 25.0% |
| ! | ACATGCATTAAGAAAATTGT+GGG | - | chr3.1:10765099-10765118 | None:intergenic | 25.0% |
| ! | ACTTTAAATGCAGAATTTAG+AGG | - | chr3.1:10765511-10765530 | None:intergenic | 25.0% |
| ! | ATTCAGCAAAATCAATATGT+GGG | - | chr3.1:10765573-10765592 | None:intergenic | 25.0% |
| ! | CTACTAAAAATCAAAACTCA+AGG | - | chr3.1:10765430-10765449 | None:intergenic | 25.0% |
| ! | GACAAAATTAAGACAAAACA+TGG | - | chr3.1:10765998-10766017 | None:intergenic | 25.0% |
| ! | TGATTGTTGATGCATAATAA+AGG | + | chr3.1:10765478-10765497 | MS.gene90411:intron | 25.0% |
| !! | ATTAAGTCTCTATTTGAAAC+TGG | + | chr3.1:10766111-10766130 | MS.gene90411:CDS | 25.0% |
| !! | TGTTCATTTTATGACATGTA+CGG | + | chr3.1:10764970-10764989 | MS.gene90411:intron | 25.0% |
| !!! | ACATACATACGATTTTTTGT+TGG | + | chr3.1:10765211-10765230 | MS.gene90411:intron | 25.0% |
| !!! | AGTTTTGATTTTTAGTAGAC+AGG | + | chr3.1:10765432-10765451 | MS.gene90411:intron | 25.0% |
| !!! | CTGTTAAGATGATTTTGAAA+GGG | + | chr3.1:10764863-10764882 | MS.gene90411:CDS | 25.0% |
| !!! | GTTTTGATTTTTAGTAGACA+GGG | + | chr3.1:10765433-10765452 | MS.gene90411:intron | 25.0% |
| !!! | TATGTCCCAGTTTTTTTTTT+TGG | + | chr3.1:10765401-10765420 | MS.gene90411:intron | 25.0% |
| AAATAGCAAAGCTATGAACT+TGG | + | chr3.1:10765684-10765703 | MS.gene90411:intron | 30.0% | |
| AATAGCAAAGCTATGAACTT+GGG | + | chr3.1:10765685-10765704 | MS.gene90411:intron | 30.0% | |
| AGGAGACCAAAAAAAAAAAC+TGG | - | chr3.1:10765410-10765429 | None:intergenic | 30.0% | |
| ATGAACTTGGGAAATTGATT+TGG | + | chr3.1:10765697-10765716 | MS.gene90411:intron | 30.0% | |
| ATTAAGACAAAACATGGACA+TGG | - | chr3.1:10765992-10766011 | None:intergenic | 30.0% | |
| CAACTTATGGTGAAAAATGA+GGG | + | chr3.1:10765307-10765326 | MS.gene90411:intron | 30.0% | |
| GAACAAGAATAAAGAAGGTT+TGG | - | chr3.1:10764955-10764974 | None:intergenic | 30.0% | |
| GGAGACCAAAAAAAAAAACT+GGG | - | chr3.1:10765409-10765428 | None:intergenic | 30.0% | |
| TCAACTTATGGTGAAAAATG+AGG | + | chr3.1:10765306-10765325 | MS.gene90411:intron | 30.0% | |
| TCTGATATCAAATTAACAGC+AGG | + | chr3.1:10765811-10765830 | MS.gene90411:intron | 30.0% | |
| TTAAGACAAAACATGGACAT+GGG | - | chr3.1:10765991-10766010 | None:intergenic | 30.0% | |
| TTGAAACTGGTGAATTGAAA+AGG | + | chr3.1:10766124-10766143 | MS.gene90411:CDS | 30.0% | |
| ! | GCTGTTAAGATGATTTTGAA+AGG | + | chr3.1:10764862-10764881 | MS.gene90411:CDS | 30.0% |
| ! | TGATGAAAGAGATGTTTCTA+TGG | + | chr3.1:10764900-10764919 | MS.gene90411:CDS | 30.0% |
| !! | AGATGATTTTGAAAGGGTTT+AGG | + | chr3.1:10764869-10764888 | MS.gene90411:CDS | 30.0% |
| !! | GATGATTTTGAAAGGGTTTA+GGG | + | chr3.1:10764870-10764889 | MS.gene90411:CDS | 30.0% |
| !! | GTTTTAAATTGTTCTTGTGG+TGG | + | chr3.1:10765455-10765474 | MS.gene90411:intron | 30.0% |
| !!! | AGGGTTTTAAATTGTTCTTG+TGG | + | chr3.1:10765452-10765471 | MS.gene90411:intron | 30.0% |
| AAATTATTCGATGAGGACGA+AGG | + | chr3.1:10766243-10766262 | MS.gene90411:CDS | 35.0% | |
| AAGCAAATTCTACGGTTCAA+TGG | + | chr3.1:10764561-10764580 | MS.gene90411:CDS | 35.0% | |
| AATTATTCGATGAGGACGAA+GGG | + | chr3.1:10766244-10766263 | MS.gene90411:CDS | 35.0% | |
| ATGTGACAATGTTCATATCG+AGG | + | chr3.1:10765640-10765659 | MS.gene90411:intron | 35.0% | |
| CAAATTAACAGCAGGAAAAC+CGG | + | chr3.1:10765819-10765838 | MS.gene90411:intron | 35.0% | |
| GAATTGAAAAGGATTCTCGA+AGG | + | chr3.1:10766135-10766154 | MS.gene90411:CDS | 35.0% | |
| GAGTAGGAAATTATTCGATG+AGG | + | chr3.1:10766236-10766255 | MS.gene90411:CDS | 35.0% | |
| GGTTCGTTAAGCAAATTCTA+CGG | + | chr3.1:10764553-10764572 | MS.gene90411:CDS | 35.0% | |
| TCAATGAAATCATCTCTACG+TGG | + | chr3.1:10764586-10764605 | MS.gene90411:CDS | 35.0% | |
| TGCTTTCAGAAAAGAATTGC+AGG | + | chr3.1:10764927-10764946 | MS.gene90411:CDS | 35.0% | |
| TGTATTTGACGAGTTTGAGA+GGG | + | chr3.1:10764812-10764831 | MS.gene90411:CDS | 35.0% | |
| TTACGATGGATATGTTAGAG+CGG | + | chr3.1:10765125-10765144 | MS.gene90411:intron | 35.0% | |
| TTCTGTGAGTATGAAAACGA+GGG | + | chr3.1:10766342-10766361 | MS.gene90411:CDS | 35.0% | |
| ! | CATTCAACGAATTTCTAGAC+CGG | + | chr3.1:10764527-10764546 | MS.gene90411:CDS | 35.0% |
| ! | GTAGAATTTGCTTAACGAAC+CGG | - | chr3.1:10764554-10764573 | None:intergenic | 35.0% |
| ! | TTCGTTAGAGGAAAGTACAT+TGG | + | chr3.1:10766075-10766094 | MS.gene90411:CDS | 35.0% |
| ! | TTTGAAAGGGTTTAGGGTTT+GGG | + | chr3.1:10764876-10764895 | MS.gene90411:CDS | 35.0% |
| !! | ATGCATGTTTGTTGTTACGA+TGG | + | chr3.1:10765111-10765130 | MS.gene90411:intron | 35.0% |
| !! | TTTTGAAAGGGTTTAGGGTT+TGG | + | chr3.1:10764875-10764894 | MS.gene90411:CDS | 35.0% |
| !!! | CATACGATTTTTTGTTGGTC+TGG | + | chr3.1:10765216-10765235 | MS.gene90411:intron | 35.0% |
| AAAAATACGCTGCCACTGTA+TGG | - | chr3.1:10765847-10765866 | None:intergenic | 40.0% | |
| ACAGAACATCATTCCAGAAC+AGG | - | chr3.1:10766328-10766347 | None:intergenic | 40.0% | |
| AGGGATAAGAAGAACGTTTG+AGG | + | chr3.1:10764831-10764850 | MS.gene90411:CDS | 40.0% | |
| AGGGTTGTTGAAAAGATGCT+TGG | + | chr3.1:10766263-10766282 | MS.gene90411:CDS | 40.0% | |
| ATACCTTGTGAGAATTGCAG+TGG | + | chr3.1:10766213-10766232 | MS.gene90411:CDS | 40.0% | |
| ATCATCTCTACGTGGAAGAA+TGG | + | chr3.1:10764594-10764613 | MS.gene90411:CDS | 40.0% | |
| CGGTCTAGAAATTCGTTGAA+TGG | - | chr3.1:10764529-10764548 | None:intergenic | 40.0% | |
| GTGTATTTGACGAGTTTGAG+AGG | + | chr3.1:10764811-10764830 | MS.gene90411:CDS | 40.0% | |
| GTTCTGTGAGTATGAAAACG+AGG | + | chr3.1:10766341-10766360 | MS.gene90411:CDS | 40.0% | |
| TACCTTGTGAGAATTGCAGT+GGG | + | chr3.1:10766214-10766233 | MS.gene90411:CDS | 40.0% | |
| TTTCCTCTAACGAACACTTG+AGG | - | chr3.1:10766069-10766088 | None:intergenic | 40.0% | |
| ! | AATTCTTTTGTCGTCGTCGT+TGG | - | chr3.1:10764649-10764668 | None:intergenic | 40.0% |
| ! | CTGCATTTAAAGTTGTCACG+AGG | + | chr3.1:10765518-10765537 | MS.gene90411:intron | 40.0% |
| ! | GCAATGAGAATGGACTTGTA+AGG | + | chr3.1:10766289-10766308 | MS.gene90411:CDS | 40.0% |
| ! | GTTAGAGGAAAGTACATTGG+TGG | + | chr3.1:10766078-10766097 | MS.gene90411:CDS | 40.0% |
| AACAAAGCCAGGCTTCATCT+TGG | - | chr3.1:10766166-10766185 | None:intergenic | 45.0% | |
| ACAAAGCCAGGCTTCATCTT+GGG | - | chr3.1:10766165-10766184 | None:intergenic | 45.0% | |
| ACGTGTGCATCGTGTTTGAT+CGG | - | chr3.1:10764483-10764502 | None:intergenic | 45.0% | |
| ATTGTTGCTGCAGTCTGTGA+TGG | + | chr3.1:10766023-10766042 | MS.gene90411:intron | 45.0% | |
| ATTTGCTTAACGAACCGGAC+CGG | - | chr3.1:10764549-10764568 | None:intergenic | 45.0% | |
| CAACTTTCGCAAACAAAGCC+AGG | - | chr3.1:10766177-10766196 | None:intergenic | 45.0% | |
| TGCTTGGAGTGCAATGAGAA+TGG | + | chr3.1:10766279-10766298 | MS.gene90411:CDS | 45.0% | |
| TTGTTGCTGCAGTCTGTGAT+GGG | + | chr3.1:10766024-10766043 | MS.gene90411:intron | 45.0% | |
| ! | AACGAATTTCTAGACCGGTC+CGG | + | chr3.1:10764532-10764551 | MS.gene90411:CDS | 45.0% |
| ! | ATGAAGCGGGGATGTTGTTT+CGG | + | chr3.1:10764761-10764780 | MS.gene90411:CDS | 45.0% |
| ! | TGGTTCGGAAGAAGATGAAG+CGG | + | chr3.1:10764747-10764766 | MS.gene90411:CDS | 45.0% |
| !! | GGCTTTGTTTGCGAAAGTTG+TGG | + | chr3.1:10766177-10766196 | MS.gene90411:CDS | 45.0% |
| !! | ATTAAAAAAAAAAAAAGAAT+TGG | - | chr3.1:10765363-10765382 | None:intergenic | 5.0% |
| ATTCCAGAACAGGCGCAACA+AGG | - | chr3.1:10766318-10766337 | None:intergenic | 50.0% | |
| CTCCCACTGCAATTCTCACA+AGG | - | chr3.1:10766219-10766238 | None:intergenic | 50.0% | |
| CTGCCTCAAGTGTTCGTTAG+AGG | + | chr3.1:10766063-10766082 | MS.gene90411:CDS | 50.0% | |
| GGAAAACCGGATCCATACAG+TGG | + | chr3.1:10765832-10765851 | MS.gene90411:intron | 50.0% | |
| GGATGCTGATGATCGGATTG+TGG | + | chr3.1:10764789-10764808 | MS.gene90411:CDS | 50.0% | |
| GGTTCGGAAGAAGATGAAGC+GGG | + | chr3.1:10764748-10764767 | MS.gene90411:CDS | 50.0% | |
| GTGAGAATTGCAGTGGGAGT+AGG | + | chr3.1:10766220-10766239 | MS.gene90411:CDS | 50.0% | |
| GTTCGGAAGAAGATGAAGCG+GGG | + | chr3.1:10764749-10764768 | MS.gene90411:CDS | 50.0% | |
| TCTTCTTCCGAACCAGAACG+CGG | - | chr3.1:10764742-10764761 | None:intergenic | 50.0% | |
| ! | GGTTTTCCCAAGATGAAGCC+TGG | + | chr3.1:10766156-10766175 | MS.gene90411:CDS | 50.0% |
| ACCTTCTTCCGAACCACGTG+CGG | + | chr3.1:10764696-10764715 | MS.gene90411:CDS | 55.0% | |
| ACGCGGCTTCTGACCTAACT+TGG | - | chr3.1:10764725-10764744 | None:intergenic | 55.0% | |
| ACGCTGCCACTGTATGGATC+CGG | - | chr3.1:10765841-10765860 | None:intergenic | 55.0% | |
| GCGAAAGTTGTGGCGATGCT+AGG | + | chr3.1:10766187-10766206 | MS.gene90411:CDS | 55.0% | |
| TGTCCTTGTTGCGCCTGTTC+TGG | + | chr3.1:10766312-10766331 | MS.gene90411:CDS | 55.0% | |
| TTAGGTCAGAAGCCGCGTTC+TGG | + | chr3.1:10764727-10764746 | MS.gene90411:CDS | 55.0% | |
| ! | GGTTGGCGGATGCTGATGAT+CGG | + | chr3.1:10764782-10764801 | MS.gene90411:CDS | 55.0% |
| ! | TCAGAAGCCGCGTTCTGGTT+CGG | + | chr3.1:10764732-10764751 | MS.gene90411:CDS | 55.0% |
| !! | AGCGGGGATGTTGTTTCGGT+TGG | + | chr3.1:10764765-10764784 | MS.gene90411:CDS | 55.0% |
| !! | GGGGATGTTGTTTCGGTTGG+CGG | + | chr3.1:10764768-10764787 | MS.gene90411:CDS | 55.0% |
| CCACGTGCGGCTTCCAAGTT+AGG | + | chr3.1:10764709-10764728 | MS.gene90411:CDS | 60.0% | |
| CCTAACTTGGAAGCCGCACG+TGG | - | chr3.1:10764712-10764731 | None:intergenic | 60.0% | |
| CTTGGAAGCCGCACGTGGTT+CGG | - | chr3.1:10764707-10764726 | None:intergenic | 60.0% | |
| !! | GCTGCAGTCTGTGATGGGTG+AGG | + | chr3.1:10766029-10766048 | MS.gene90411:intron | 60.0% |
| ! | GCCGCACGTGGTTCGGAAGA+AGG | - | chr3.1:10764700-10764719 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 10764457 | 10766395 | 10764457 | ID=MS.gene90411 |
| chr3.1 | mRNA | 10764457 | 10766395 | 10764457 | ID=MS.gene90411.t1;Parent=MS.gene90411 |
| chr3.1 | exon | 10764457 | 10764948 | 10764457 | ID=MS.gene90411.t1.exon1;Parent=MS.gene90411.t1 |
| chr3.1 | CDS | 10764457 | 10764948 | 10764457 | ID=cds.MS.gene90411.t1;Parent=MS.gene90411.t1 |
| chr3.1 | exon | 10766036 | 10766395 | 10766036 | ID=MS.gene90411.t1.exon2;Parent=MS.gene90411.t1 |
| chr3.1 | CDS | 10766036 | 10766395 | 10766036 | ID=cds.MS.gene90411.t1;Parent=MS.gene90411.t1 |
| Gene Sequence |
| Protein sequence |
