Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90727.t1 | XP_003589334.1 | 98.6 | 627 | 9 | 0 | 77 | 703 | 1 | 627 | 0.00E+00 | 1227.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90727.t1 | Q9SIW1 | 63.1 | 282 | 69 | 6 | 249 | 519 | 117 | 374 | 6.2e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90727.t1 | G7I5U5 | 98.6 | 627 | 9 | 0 | 77 | 703 | 1 | 627 | 0.0e+00 | 1227.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene90727.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050633 | MS.gene90727 | 0.816913 | 4.33E-52 | -1.69E-46 |
| MS.gene050657 | MS.gene90727 | 0.815476 | 9.07E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene90727 | 0.81758 | 3.06E-52 | -1.69E-46 |
| MS.gene051147 | MS.gene90727 | 0.800775 | 1.23E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene90727 | 0.814218 | 1.72E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene90727 | 0.853891 | 1.77E-61 | -1.69E-46 |
| MS.gene052463 | MS.gene90727 | 0.836217 | 1.06E-56 | -1.69E-46 |
| MS.gene052674 | MS.gene90727 | 0.844876 | 5.76E-59 | -1.69E-46 |
| MS.gene052675 | MS.gene90727 | 0.846961 | 1.56E-59 | -1.69E-46 |
| MS.gene052677 | MS.gene90727 | 0.85056 | 1.57E-60 | -1.69E-46 |
| MS.gene052775 | MS.gene90727 | 0.802316 | 5.95E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene90727 | -0.802214 | 6.24E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene90727 | 0.800642 | 1.31E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene90727 | 0.814426 | 1.55E-51 | -1.69E-46 |
| MS.gene054641 | MS.gene90727 | 0.824928 | 6.19E-54 | -1.69E-46 |
| MS.gene055864 | MS.gene90727 | 0.809078 | 2.26E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene90727 | 0.834165 | 3.51E-56 | -1.69E-46 |
| MS.gene056779 | MS.gene90727 | 0.809692 | 1.67E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene90727 | 0.814913 | 1.21E-51 | -1.69E-46 |
| MS.gene058289 | MS.gene90727 | 0.826466 | 2.67E-54 | -1.69E-46 |
| MS.gene058647 | MS.gene90727 | 0.815677 | 8.18E-52 | -1.69E-46 |
| MS.gene060122 | MS.gene90727 | -0.869821 | 2.32E-66 | -1.69E-46 |
| MS.gene060125 | MS.gene90727 | -0.858228 | 9.51E-63 | -1.69E-46 |
| MS.gene060373 | MS.gene90727 | 0.806197 | 9.24E-50 | -1.69E-46 |
| MS.gene060380 | MS.gene90727 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene90727 | 0.859678 | 3.50E-63 | -1.69E-46 |
| MS.gene060932 | MS.gene90727 | 0.827627 | 1.41E-54 | -1.69E-46 |
| MS.gene06121 | MS.gene90727 | 0.801006 | 1.10E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90727.t1 | MTR_1g023050 | 98.565 | 627 | 9 | 0 | 77 | 703 | 1 | 627 | 0.0 | 1293 |
| MS.gene90727.t1 | MTR_3g112300 | 59.476 | 649 | 179 | 21 | 77 | 703 | 1 | 587 | 0.0 | 675 |
| MS.gene90727.t1 | MTR_3g112300 | 67.105 | 456 | 117 | 10 | 77 | 521 | 1 | 434 | 0.0 | 578 |
| MS.gene90727.t1 | MTR_3g112300 | 61.000 | 100 | 28 | 5 | 615 | 703 | 418 | 517 | 7.36e-22 | 100 |
| MS.gene90727.t1 | MTR_3g112300 | 66.425 | 414 | 106 | 10 | 77 | 479 | 1 | 392 | 6.43e-178 | 513 |
| MS.gene90727.t1 | MTR_3g112300 | 64.631 | 393 | 106 | 10 | 77 | 458 | 1 | 371 | 1.68e-161 | 470 |
| MS.gene90727.t1 | MTR_1g057790 | 58.103 | 253 | 91 | 4 | 248 | 493 | 163 | 407 | 1.05e-88 | 291 |
| MS.gene90727.t1 | MTR_7g106320 | 58.364 | 269 | 99 | 4 | 248 | 509 | 173 | 435 | 1.39e-87 | 288 |
| MS.gene90727.t1 | MTR_8g078480 | 53.285 | 274 | 106 | 4 | 249 | 510 | 391 | 654 | 1.95e-86 | 290 |
| MS.gene90727.t1 | MTR_5g018860 | 51.064 | 282 | 114 | 4 | 241 | 510 | 333 | 602 | 2.21e-85 | 285 |
| MS.gene90727.t1 | MTR_4g051532 | 57.836 | 268 | 98 | 4 | 247 | 507 | 218 | 477 | 1.49e-84 | 281 |
| MS.gene90727.t1 | MTR_8g098815 | 51.737 | 259 | 99 | 5 | 249 | 495 | 188 | 432 | 9.42e-77 | 258 |
| MS.gene90727.t1 | MTR_3g112290 | 51.408 | 284 | 93 | 8 | 249 | 511 | 168 | 427 | 8.68e-76 | 251 |
| MS.gene90727.t1 | MTR_7g065050 | 41.234 | 308 | 137 | 8 | 250 | 538 | 141 | 423 | 4.43e-60 | 211 |
| MS.gene90727.t1 | MTR_4g019450 | 43.130 | 262 | 111 | 4 | 249 | 502 | 199 | 430 | 2.41e-58 | 208 |
| MS.gene90727.t1 | MTR_2g095050 | 49.500 | 200 | 82 | 2 | 331 | 511 | 319 | 518 | 9.61e-56 | 201 |
| MS.gene90727.t1 | MTR_1g016490 | 37.548 | 261 | 144 | 5 | 248 | 501 | 245 | 493 | 2.71e-43 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90727.t1 | AT2G16400 | 62.766 | 282 | 70 | 6 | 249 | 519 | 117 | 374 | 5.93e-111 | 344 |
| MS.gene90727.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 155 | 505 | 78 | 424 | 4.18e-108 | 338 |
| MS.gene90727.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 155 | 505 | 78 | 424 | 4.18e-108 | 338 |
| MS.gene90727.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 155 | 505 | 78 | 424 | 4.18e-108 | 338 |
| MS.gene90727.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 155 | 505 | 78 | 424 | 4.18e-108 | 338 |
| MS.gene90727.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 155 | 505 | 78 | 424 | 4.18e-108 | 338 |
| MS.gene90727.t1 | AT1G75410 | 62.132 | 272 | 72 | 5 | 247 | 506 | 168 | 420 | 2.57e-106 | 333 |
| MS.gene90727.t1 | AT1G75410 | 62.132 | 272 | 72 | 5 | 247 | 506 | 168 | 420 | 2.57e-106 | 333 |
| MS.gene90727.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 249 | 558 | 143 | 444 | 7.60e-106 | 333 |
| MS.gene90727.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 249 | 558 | 143 | 444 | 7.60e-106 | 333 |
| MS.gene90727.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 249 | 558 | 143 | 444 | 7.60e-106 | 333 |
| MS.gene90727.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 249 | 558 | 143 | 444 | 7.60e-106 | 333 |
| MS.gene90727.t1 | AT1G75410 | 58.300 | 247 | 72 | 5 | 245 | 479 | 166 | 393 | 7.03e-85 | 273 |
| MS.gene90727.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 249 | 500 | 240 | 492 | 5.05e-81 | 270 |
| MS.gene90727.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 249 | 500 | 240 | 492 | 5.05e-81 | 270 |
| MS.gene90727.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 249 | 500 | 240 | 492 | 5.05e-81 | 270 |
| MS.gene90727.t1 | AT4G36870 | 52.809 | 267 | 98 | 5 | 249 | 501 | 315 | 567 | 1.15e-80 | 272 |
| MS.gene90727.t1 | AT4G36870 | 52.809 | 267 | 98 | 5 | 249 | 501 | 315 | 567 | 1.15e-80 | 272 |
| MS.gene90727.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 246 | 493 | 189 | 446 | 7.51e-80 | 268 |
| MS.gene90727.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 246 | 493 | 189 | 446 | 7.51e-80 | 268 |
| MS.gene90727.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 246 | 493 | 189 | 446 | 7.51e-80 | 268 |
| MS.gene90727.t1 | AT2G23760 | 43.533 | 317 | 102 | 5 | 249 | 500 | 240 | 544 | 3.94e-71 | 245 |
| MS.gene90727.t1 | AT5G41410 | 48.727 | 275 | 111 | 5 | 249 | 502 | 196 | 461 | 3.89e-68 | 235 |
| MS.gene90727.t1 | AT2G27220 | 45.489 | 266 | 103 | 6 | 247 | 508 | 77 | 304 | 2.68e-66 | 225 |
| MS.gene90727.t1 | AT2G27220 | 45.489 | 266 | 103 | 6 | 247 | 508 | 77 | 304 | 2.68e-66 | 225 |
| MS.gene90727.t1 | AT4G36870 | 49.593 | 246 | 96 | 5 | 249 | 480 | 315 | 546 | 1.11e-64 | 224 |
| MS.gene90727.t1 | AT4G36870 | 49.590 | 244 | 95 | 5 | 249 | 478 | 315 | 544 | 1.31e-63 | 221 |
| MS.gene90727.t1 | AT1G75430 | 42.125 | 273 | 130 | 7 | 248 | 506 | 18 | 276 | 3.18e-63 | 212 |
| MS.gene90727.t1 | AT2G27220 | 43.066 | 274 | 116 | 6 | 247 | 508 | 77 | 322 | 3.40e-63 | 217 |
| MS.gene90727.t1 | AT5G02030 | 43.123 | 269 | 113 | 6 | 250 | 502 | 174 | 418 | 1.37e-55 | 200 |
| MS.gene90727.t1 | AT2G27990 | 45.992 | 237 | 112 | 5 | 292 | 521 | 289 | 516 | 2.60e-53 | 194 |
| MS.gene90727.t1 | AT4G32980 | 39.526 | 253 | 136 | 6 | 250 | 501 | 205 | 441 | 5.31e-43 | 162 |
| MS.gene90727.t1 | AT4G32980 | 39.526 | 253 | 136 | 6 | 250 | 501 | 205 | 441 | 5.31e-43 | 162 |
| MS.gene90727.t1 | AT1G75430 | 34.667 | 225 | 119 | 7 | 248 | 458 | 18 | 228 | 4.73e-31 | 123 |
| MS.gene90727.t1 | AT2G27990 | 40.936 | 171 | 88 | 4 | 292 | 458 | 289 | 450 | 9.97e-27 | 114 |
Find 156 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAATTGTACCTGGTTTC+TGG | 0.152099 | 1.4:-1569743 | None:intergenic |
| TCCTTTGAGTCAATTGAATT+TGG | 0.219438 | 1.4:-1569392 | None:intergenic |
| TTCGAGTGTGGGATGATAAA+AGG | 0.235165 | 1.4:+1570148 | MS.gene90727:CDS |
| TTATGCAGCCATCACCATTT+TGG | 0.238602 | 1.4:-1570401 | None:intergenic |
| TGCATGGCATCTTTGTCTTC+TGG | 0.248717 | 1.4:+1568232 | MS.gene90727:CDS |
| CAAGTTGATTCCATTGTTTA+AGG | 0.268533 | 1.4:+1567790 | MS.gene90727:CDS |
| TGCGGAACGACAGCATTTAT+TGG | 0.269167 | 1.4:+1568594 | MS.gene90727:CDS |
| GAGATAGGTGGATTTGAATA+AGG | 0.271180 | 1.4:-1570372 | None:intergenic |
| TCTTACGCGGAGATGATATC+TGG | 0.303124 | 1.4:+1567890 | MS.gene90727:CDS |
| TTAATGCGAGGGTGCGTCTT+TGG | 0.310569 | 1.4:+1570022 | MS.gene90727:CDS |
| CCAATGATGACATCAATAAA+AGG | 0.314376 | 1.4:+1570541 | MS.gene90727:CDS |
| GATCAGATTGCCCTTCATTA+AGG | 0.326393 | 1.4:-1568312 | None:intergenic |
| CGGTTTGTTTCAAGCCCTTT+CGG | 0.335842 | 1.4:-1568429 | None:intergenic |
| AGTATTGACACAGAGCTTTC+AGG | 0.345023 | 1.4:-1569534 | None:intergenic |
| CCTATCTCAATCAACCAAAA+TGG | 0.345586 | 1.4:+1570387 | MS.gene90727:CDS |
| AATGTGATGGATTCTAGAAT+TGG | 0.353123 | 1.4:+1570306 | MS.gene90727:CDS |
| AACTCTGAAAGTGATGGATT+TGG | 0.353605 | 1.4:+1570513 | MS.gene90727:CDS |
| GAATAACTGCTGATCCTTGC+AGG | 0.353930 | 1.4:-1568339 | None:intergenic |
| AAACACACACAGAGACAAAA+TGG | 0.357782 | 1.4:-1567588 | None:intergenic |
| GAATATGCTGTCTATTGATC+AGG | 0.361084 | 1.4:+1567997 | MS.gene90727:CDS |
| TGTTCATGTTAAACCTTTGT+TGG | 0.369527 | 1.4:-1570344 | None:intergenic |
| TCATCGTCTCTCAGAGCTTT+CGG | 0.386352 | 1.4:-1570123 | None:intergenic |
| GTTGAAGTTTATGACATCTA+TGG | 0.390672 | 1.4:+1567964 | MS.gene90727:CDS |
| CTTTCTGCTCCCTTAAACAA+TGG | 0.392318 | 1.4:-1567800 | None:intergenic |
| GATAAATCATCATAAGTTGT+AGG | 0.393638 | 1.4:-1570435 | None:intergenic |
| TTGTTTGCATTAGAACCATT+AGG | 0.396087 | 1.4:-1568550 | None:intergenic |
| CAAGTATCTTCAGGCCCTAA+TGG | 0.396669 | 1.4:+1568535 | MS.gene90727:CDS |
| CAAAGAAGAGTTTGGTGATT+CGG | 0.398248 | 1.4:+1570068 | MS.gene90727:CDS |
| AGGGCCTGTCTCTTAGCCTT+GGG | 0.402513 | 1.4:+1568095 | MS.gene90727:CDS |
| TATAATCCACATCCTTCAAT+AGG | 0.405384 | 1.4:+1568289 | MS.gene90727:CDS |
| TCAAAGGAGCCTTGGAGAAC+AGG | 0.407571 | 1.4:+1569407 | MS.gene90727:CDS |
| TGTTTGCATTAGAACCATTA+GGG | 0.408633 | 1.4:-1568549 | None:intergenic |
| GGATACATTGTAAGCAAGAT+TGG | 0.408759 | 1.4:-1567845 | None:intergenic |
| CAGGGCCTGTCTCTTAGCCT+TGG | 0.411685 | 1.4:+1568094 | MS.gene90727:CDS |
| ATTCATATCAGGTGGCGAAT+TGG | 0.412122 | 1.4:+1569995 | MS.gene90727:intron |
| GAACAACAAGGTCAAATTGC+AGG | 0.412751 | 1.4:+1570210 | MS.gene90727:CDS |
| CCCGAAGAAAACGCTTGGTT+CGG | 0.414480 | 1.4:-1567866 | None:intergenic |
| GGAAAGCAACAACACAAGTT+TGG | 0.415587 | 1.4:+1570627 | MS.gene90727:CDS |
| CCTTAACTCTCATTACCTTA+AGG | 0.423186 | 1.4:+1568372 | MS.gene90727:CDS |
| GAAGGGGTCTGCATCTCTTA+AGG | 0.423750 | 1.4:+1568195 | MS.gene90727:CDS |
| ATCCTCCTCAACCACAGAAT+TGG | 0.427692 | 1.4:+1570251 | MS.gene90727:CDS |
| ATCATGTTGGCAAGACAAAC+AGG | 0.427985 | 1.4:+1569715 | MS.gene90727:CDS |
| AAGTTGATTCCATTGTTTAA+GGG | 0.429773 | 1.4:+1567791 | MS.gene90727:CDS |
| TTATCAGAGTTGAATAACTT+TGG | 0.446808 | 1.4:+1570453 | MS.gene90727:CDS |
| ACAGCGAAAGTGACGGGAAA+TGG | 0.449081 | 1.4:-1569349 | None:intergenic |
| TGCGCAAATCTCAAACTTGA+AGG | 0.449976 | 1.4:+1568177 | MS.gene90727:CDS |
| TAGTCTAACAAATCAGTATC+TGG | 0.450445 | 1.4:-1570588 | None:intergenic |
| ACGAGTCCGAACTGTGTCCT+TGG | 0.450686 | 1.4:-1568046 | None:intergenic |
| CTTAAGGTAATGAGAGTTAA+GGG | 0.452147 | 1.4:-1568371 | None:intergenic |
| GCATTTGATGACAGTATTGT+CGG | 0.454790 | 1.4:-1569251 | None:intergenic |
| CCTTAAGGTAATGAGAGTTA+AGG | 0.455316 | 1.4:-1568372 | None:intergenic |
| TAGCGAGGTGAAACTGTTGC+CGG | 0.455506 | 1.4:-1568149 | None:intergenic |
| AAATGGTGATGGCTGCATAA+TGG | 0.456126 | 1.4:+1570404 | MS.gene90727:CDS |
| GAAGTTCCTGTGCTGCCTTA+AGG | 0.456385 | 1.4:-1568387 | None:intergenic |
| TCTATCCAATTCTGTGGTTG+AGG | 0.458494 | 1.4:-1570256 | None:intergenic |
| CGAGCAAAACGTACAATGCC+AGG | 0.460386 | 1.4:+1568075 | MS.gene90727:CDS |
| TTGTACATTTCTTCGACCAT+TGG | 0.464693 | 1.4:-1570048 | None:intergenic |
| TTTGACATGGTTGCTGGTTG+CGG | 0.469668 | 1.4:+1569291 | MS.gene90727:CDS |
| GACTATCACTTCACAGACTC+TGG | 0.470328 | 1.4:+1570606 | MS.gene90727:CDS |
| GATTTCAAAACAATGTCAAA+AGG | 0.470576 | 1.4:+1568257 | MS.gene90727:CDS |
| TTAAGGCCTATTGAAGGATG+TGG | 0.474446 | 1.4:-1568295 | None:intergenic |
| CCTTCATTAAGGCCTATTGA+AGG | 0.476704 | 1.4:-1568301 | None:intergenic |
| ATGTGATGGATTCTAGAATT+GGG | 0.476805 | 1.4:+1570307 | MS.gene90727:CDS |
| CGAAAGGGCTTGAAACAAAC+CGG | 0.477844 | 1.4:+1568430 | MS.gene90727:CDS |
| TCGAGTGTGGGATGATAAAA+GGG | 0.478699 | 1.4:+1570149 | MS.gene90727:CDS |
| GAAATGTACAAAGAAGAGTT+TGG | 0.481440 | 1.4:+1570060 | MS.gene90727:CDS |
| GGATTCAAAGTAGTGATCAT+TGG | 0.484660 | 1.4:+1570280 | MS.gene90727:CDS |
| CAATCTATGCAAGTATCTTC+AGG | 0.487753 | 1.4:+1568526 | MS.gene90727:CDS |
| TTGAATAACTTTGGTGTTGG+TGG | 0.488559 | 1.4:+1570462 | MS.gene90727:CDS |
| CCTTCAATAGGCCTTAATGA+AGG | 0.490236 | 1.4:+1568301 | MS.gene90727:CDS |
| CAATTGACTCAAAGGAGCCT+TGG | 0.496196 | 1.4:+1569399 | MS.gene90727:CDS |
| GACAAGTTAATGAATGTTGA+TGG | 0.500544 | 1.4:+1570183 | MS.gene90727:CDS |
| ACGCAAACAGCGAAAGTGAC+GGG | 0.500857 | 1.4:-1569355 | None:intergenic |
| ACAGATTCACTGTAATTATG+AGG | 0.502023 | 1.4:-1567926 | None:intergenic |
| TCCTTTCAATATCAGTATCC+CGG | 0.503550 | 1.4:+1568130 | MS.gene90727:CDS |
| TCAACCACAGAATTGGATAG+AGG | 0.504097 | 1.4:+1570258 | MS.gene90727:CDS |
| AGCAAGAGCAGTGTATGGTT+CGG | 0.505239 | 1.4:-1569319 | None:intergenic |
| TGAGAGTTAAGGGCATTGTT+CGG | 0.506066 | 1.4:-1568361 | None:intergenic |
| GCCAAATTCAATTGACTCAA+AGG | 0.508585 | 1.4:+1569391 | MS.gene90727:CDS |
| GATGCTTCCAAAGATTCTGA+TGG | 0.513635 | 1.4:+1568490 | MS.gene90727:CDS |
| CGCAAAGCAAGAGCAGTGTA+TGG | 0.513848 | 1.4:-1569324 | None:intergenic |
| GAAATAGTTAATGTCCGAAA+GGG | 0.516547 | 1.4:+1568415 | MS.gene90727:CDS |
| CAAGGCTAAGAGACAGGCCC+TGG | 0.521258 | 1.4:-1568093 | None:intergenic |
| ACAAACTCGTGCAACAAATG+TGG | 0.529085 | 1.4:-1570654 | None:intergenic |
| TTGTCCCAAGGCTAAGAGAC+AGG | 0.530080 | 1.4:-1568099 | None:intergenic |
| TGGATCGCTCGTACTAGCAT+TGG | 0.530376 | 1.4:-1568026 | None:intergenic |
| AATAAATGCTGTCGTTCCGC+AGG | 0.530460 | 1.4:-1568592 | None:intergenic |
| GGGCTTGAAACAAACCGGAT+TGG | 0.530868 | 1.4:+1568435 | MS.gene90727:CDS |
| AATCCCTCTATCCAATTCTG+TGG | 0.532847 | 1.4:-1570262 | None:intergenic |
| AACAGGCTTGACCAGAAACC+AGG | 0.533633 | 1.4:+1569732 | MS.gene90727:CDS |
| CGCAAATCTCAAACTTGAAG+GGG | 0.537507 | 1.4:+1568179 | MS.gene90727:CDS |
| TGTTTGCGTGATGCTATTAG+CGG | 0.542554 | 1.4:+1569369 | MS.gene90727:CDS |
| ATAGGGGAACCTACGGATGA+AGG | 0.542920 | 1.4:-1569581 | None:intergenic |
| TTTCACTTGCATTAGAGTTG+AGG | 0.543423 | 1.4:+1570490 | MS.gene90727:CDS |
| ATGGCATCTTTGTCTTCTGG+AGG | 0.543573 | 1.4:+1568235 | MS.gene90727:CDS |
| ATTTCAAAACAATGTCAAAA+GGG | 0.546039 | 1.4:+1568258 | MS.gene90727:CDS |
| AGCGATCCAAGGACACAGTT+CGG | 0.549071 | 1.4:+1568040 | MS.gene90727:CDS |
| AATATGCTGTCTATTGATCA+GGG | 0.561372 | 1.4:+1567998 | MS.gene90727:CDS |
| TCATTACCTTAAGGCAGCAC+AGG | 0.563750 | 1.4:+1568381 | MS.gene90727:CDS |
| AGCGAGGTGAAACTGTTGCC+GGG | 0.566022 | 1.4:-1568148 | None:intergenic |
| TTGAGGAACTCTGAAAGTGA+TGG | 0.567032 | 1.4:+1570507 | MS.gene90727:CDS |
| GCGCAAATCTCAAACTTGAA+GGG | 0.567269 | 1.4:+1568178 | MS.gene90727:CDS |
| CTTCAATAGGCCTTAATGAA+GGG | 0.568757 | 1.4:+1568302 | MS.gene90727:CDS |
| ATCCAATTCTGTGGTTGAGG+AGG | 0.571241 | 1.4:-1570253 | None:intergenic |
| CTGTGTCAATACTCCGTGCA+TGG | 0.572034 | 1.4:+1569544 | MS.gene90727:CDS |
| ATTTGGTATTAGTTATCCGA+AGG | 0.572160 | 1.4:+1569681 | MS.gene90727:intron |
| TCAATCAACCAAAATGGTGA+TGG | 0.572460 | 1.4:+1570393 | MS.gene90727:CDS |
| CAAAACAATGTCAAAAGGGA+GGG | 0.573643 | 1.4:+1568262 | MS.gene90727:CDS |
| ACTGCTGATCCTTGCAGGCA+CGG | 0.574395 | 1.4:-1568334 | None:intergenic |
| CAAACTCGTGCAACAAATGT+GGG | 0.576826 | 1.4:-1570653 | None:intergenic |
| AAGATCCCGAAGAAAACGCT+TGG | 0.576848 | 1.4:-1567871 | None:intergenic |
| CGAATTGGTTTATTAATGCG+AGG | 0.577323 | 1.4:+1570010 | MS.gene90727:CDS |
| TGAAATAGTTAATGTCCGAA+AGG | 0.577336 | 1.4:+1568414 | MS.gene90727:CDS |
| CTTACGCGGAGATGATATCT+GGG | 0.578743 | 1.4:+1567891 | MS.gene90727:CDS |
| AAATGCAAGGTGACCAACAA+AGG | 0.584563 | 1.4:+1570331 | MS.gene90727:CDS |
| GGATACTGATATTGAAAGGA+AGG | 0.586079 | 1.4:-1568127 | None:intergenic |
| TCTAGAATTGGGAAAATGCA+AGG | 0.587723 | 1.4:+1570318 | MS.gene90727:CDS |
| GTATTCCCTCCTGTTCTCCA+AGG | 0.589107 | 1.4:-1569416 | None:intergenic |
| CAACCACAGAATTGGATAGA+GGG | 0.589884 | 1.4:+1570259 | MS.gene90727:CDS |
| TGCATCTCTTAAGGATGATG+AGG | 0.590655 | 1.4:+1568204 | MS.gene90727:CDS |
| ATGCTAGTACGAGCGATCCA+AGG | 0.594612 | 1.4:+1568029 | MS.gene90727:CDS |
| CATAATTACAGTGAATCTGT+AGG | 0.596692 | 1.4:+1567929 | MS.gene90727:CDS |
| CAATCTGATCCGTGCCTGCA+AGG | 0.597181 | 1.4:+1568325 | MS.gene90727:CDS |
| ACTCTAATGCAAGTGAAACA+TGG | 0.600932 | 1.4:-1570485 | None:intergenic |
| GCCGGGATACTGATATTGAA+AGG | 0.601547 | 1.4:-1568131 | None:intergenic |
| AAGGAGCCTTGGAGAACAGG+AGG | 0.601817 | 1.4:+1569410 | MS.gene90727:CDS |
| AACAACAAGGTCAAATTGCA+GGG | 0.603207 | 1.4:+1570211 | MS.gene90727:CDS |
| CACGCAAACAGCGAAAGTGA+CGG | 0.607447 | 1.4:-1569356 | None:intergenic |
| TCAAAACAATGTCAAAAGGG+AGG | 0.609941 | 1.4:+1568261 | MS.gene90727:CDS |
| TGATCATTGGACAAATGTGA+TGG | 0.613913 | 1.4:+1570293 | MS.gene90727:CDS |
| GAGTTGAATAACTTTGGTGT+TGG | 0.616287 | 1.4:+1570459 | MS.gene90727:CDS |
| GAATTGGTTTATTAATGCGA+GGG | 0.617226 | 1.4:+1570011 | MS.gene90727:CDS |
| GGATGATGAGGCTGAGTGCA+TGG | 0.618918 | 1.4:+1568216 | MS.gene90727:CDS |
| GGTGCGTCTTTGGAAACCAA+TGG | 0.625023 | 1.4:+1570032 | MS.gene90727:CDS |
| GGATTCAGAGAAAATCATGT+TGG | 0.625560 | 1.4:+1569702 | MS.gene90727:CDS |
| AATTACAGTGAATCTGTAGG+AGG | 0.626592 | 1.4:+1567932 | MS.gene90727:CDS |
| TAAAAGGCGTAATCAAACAA+TGG | 0.626825 | 1.4:+1570557 | MS.gene90727:CDS |
| GATTTGCGCATTCATTAGCG+AGG | 0.633287 | 1.4:-1568164 | None:intergenic |
| AGACGATGATGTTCGAGTGT+GGG | 0.634657 | 1.4:+1570137 | MS.gene90727:CDS |
| AAGGTTTACCTCATCCAACA+TGG | 0.638250 | 1.4:-1568638 | None:intergenic |
| TTCATGTGAGCTATCGCCTG+CGG | 0.643410 | 1.4:+1568576 | MS.gene90727:CDS |
| GAGACGATGATGTTCGAGTG+TGG | 0.650382 | 1.4:+1570136 | MS.gene90727:CDS |
| AGGAAGGCATCATTGTCCCA+AGG | 0.659671 | 1.4:-1568111 | None:intergenic |
| TGATCGACATAGCGGAGACG+AGG | 0.663796 | 1.4:-1569438 | None:intergenic |
| AGGAGCCTTGGAGAACAGGA+GGG | 0.665826 | 1.4:+1569411 | MS.gene90727:CDS |
| AATGCTCGAAGAGCCATGCA+CGG | 0.666429 | 1.4:-1569557 | None:intergenic |
| GAGCAAAACGTACAATGCCA+GGG | 0.666769 | 1.4:+1568076 | MS.gene90727:CDS |
| TTGGTGTAATGAGACAAGCT+TGG | 0.669718 | 1.4:+1569493 | MS.gene90727:CDS |
| CAAGCTTGGAGACCTCAGAG+AGG | 0.678920 | 1.4:+1569507 | MS.gene90727:CDS |
| AGATTAGGTTTAAAGCAACA+AGG | 0.682566 | 1.4:+1567734 | MS.gene90727:intron |
| ATATGCTGTCTATTGATCAG+GGG | 0.700074 | 1.4:+1567999 | MS.gene90727:CDS |
| GTTGATGGTGCTGAACAACA+AGG | 0.707575 | 1.4:+1570198 | MS.gene90727:CDS |
| CACACACAGAGACAAAATGG+AGG | 0.715982 | 1.4:-1567585 | None:intergenic |
| TAAGCTGCTGATCGACATAG+CGG | 0.719259 | 1.4:-1569446 | None:intergenic |
| CTTTCAGGAAGTCCTCTCTG+AGG | 0.726595 | 1.4:-1569519 | None:intergenic |
| AGAGACAAAATGGAGGTACG+AGG | 0.728962 | 1.4:-1567578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAAAAGTGAAAAATA+AGG | + | chr1.4:1567158-1567177 | MS.gene90727:intron | 10.0% |
| !!! | AATTTGTTTTAAATTTCATT+TGG | + | chr1.4:1569664-1569683 | MS.gene90727:intron | 10.0% |
| !!! | TTTATTAATTTTCCTAATTA+AGG | + | chr1.4:1567671-1567690 | MS.gene90727:intron | 10.0% |
| !!! | TTTTGCTTATAAAAAAAAAT+GGG | + | chr1.4:1567365-1567384 | MS.gene90727:intron | 10.0% |
| !! | AATGAAAAAAAAATGAGTAT+AGG | - | chr1.4:1569602-1569621 | None:intergenic | 15.0% |
| !! | AATGTAAAATGATTTATGTT+TGG | - | chr1.4:1569875-1569894 | None:intergenic | 15.0% |
| !! | ATGAAAAAAAAATGAGTATA+GGG | - | chr1.4:1569601-1569620 | None:intergenic | 15.0% |
| !! | TAATTATTGCTAAAAAAAGA+TGG | + | chr1.4:1567189-1567208 | MS.gene90727:intron | 15.0% |
| !!! | ACTCATTTTTTTTTCATTAA+TGG | + | chr1.4:1569604-1569623 | MS.gene90727:intron | 15.0% |
| !!! | ATTTATATGTTTTATACGTA+TGG | - | chr1.4:1568693-1568712 | None:intergenic | 15.0% |
| !!! | CTTTTGCTTATAAAAAAAAA+TGG | + | chr1.4:1567364-1567383 | MS.gene90727:intron | 15.0% |
| !!! | TTTTCAAATTTATATGTCTT+GGG | + | chr1.4:1566904-1566923 | MS.gene90727:intron | 15.0% |
| !!! | TTTTTCAAATTTATATGTCT+TGG | + | chr1.4:1566903-1566922 | MS.gene90727:intron | 15.0% |
| !! | ATCACTATTTAATTCATATC+AGG | + | chr1.4:1569984-1570003 | MS.gene90727:intron | 20.0% |
| !! | ATTTCAAAACAATGTCAAAA+GGG | + | chr1.4:1568258-1568277 | MS.gene90727:CDS | 20.0% |
| !! | TGAAAAAAAAATGAGTATAG+GGG | - | chr1.4:1569600-1569619 | None:intergenic | 20.0% |
| !!! | AAATGATATAATTTGCTCAT+TGG | + | chr1.4:1566861-1566880 | MS.gene90727:intron | 20.0% |
| ! | AAAACATTCATAATTGTACC+TGG | - | chr1.4:1569753-1569772 | None:intergenic | 25.0% |
| ! | AAACCTTTACACTGTATTAT+TGG | + | chr1.4:1568654-1568673 | MS.gene90727:intron | 25.0% |
| ! | AACCTCAAATTAATTGTTAG+TGG | + | chr1.4:1569168-1569187 | MS.gene90727:intron | 25.0% |
| ! | AATCCAATAATACAGTGTAA+AGG | - | chr1.4:1568660-1568679 | None:intergenic | 25.0% |
| ! | ACTATTTAATTCATATCAGG+TGG | + | chr1.4:1569987-1570006 | MS.gene90727:intron | 25.0% |
| ! | AGTTAAAATAATCCAAAGTG+AGG | - | chr1.4:1567713-1567732 | None:intergenic | 25.0% |
| ! | ATATTACAATAGTGTGTGAA+TGG | + | chr1.4:1568957-1568976 | MS.gene90727:intron | 25.0% |
| ! | CTACAAGTTATAATCAATTC+TGG | - | chr1.4:1569111-1569130 | None:intergenic | 25.0% |
| ! | CTTAACAACTTTAAGCTTAT+GGG | + | chr1.4:1568725-1568744 | MS.gene90727:intron | 25.0% |
| ! | GATAAATCATCATAAGTTGT+AGG | - | chr1.4:1570438-1570457 | None:intergenic | 25.0% |
| ! | GATTTCAAAACAATGTCAAA+AGG | + | chr1.4:1568257-1568276 | MS.gene90727:CDS | 25.0% |
| ! | GTAATCAGAAGTTTAGTAAA+TGG | - | chr1.4:1568814-1568833 | None:intergenic | 25.0% |
| ! | TGACTTCAAAAACTACAATA+GGG | + | chr1.4:1567488-1567507 | MS.gene90727:intron | 25.0% |
| ! | TGCTATTAAAGACCTTAATT+AGG | - | chr1.4:1567686-1567705 | None:intergenic | 25.0% |
| ! | TTATCAGAGTTGAATAACTT+TGG | + | chr1.4:1570453-1570472 | MS.gene90727:CDS | 25.0% |
| ! | TTATTGCTAAAAAAAGATGG+TGG | + | chr1.4:1567192-1567211 | MS.gene90727:intron | 25.0% |
| ! | TTGAGGTTAAAAGTCAATTA+TGG | - | chr1.4:1569156-1569175 | None:intergenic | 25.0% |
| !! | AAGTTGATTCCATTGTTTAA+GGG | + | chr1.4:1567791-1567810 | MS.gene90727:CDS | 25.0% |
| !!! | ACAGTTGATTTTAACACATT+TGG | + | chr1.4:1569058-1569077 | MS.gene90727:intron | 25.0% |
| !!! | GGATTATTTTAACTCAGATT+AGG | + | chr1.4:1567719-1567738 | MS.gene90727:intron | 25.0% |
| !!! | TATTTTAGTAATCTTGTTGC+TGG | + | chr1.4:1567761-1567780 | MS.gene90727:CDS | 25.0% |
| AAAGAGAAATAGTACCTTTC+AGG | - | chr1.4:1567074-1567093 | None:intergenic | 30.0% | |
| AAATAGTACCTTTCAGGATA+GGG | - | chr1.4:1567068-1567087 | None:intergenic | 30.0% | |
| AATATGCTGTCTATTGATCA+GGG | + | chr1.4:1567998-1568017 | MS.gene90727:CDS | 30.0% | |
| ACAGATTCACTGTAATTATG+AGG | - | chr1.4:1567929-1567948 | None:intergenic | 30.0% | |
| ACGATTCAACCAAATAGAAA+GGG | - | chr1.4:1568915-1568934 | None:intergenic | 30.0% | |
| AGGTTAAAAGTCAATTATGG+AGG | - | chr1.4:1569153-1569172 | None:intergenic | 30.0% | |
| ATTTATCTTACCTTTGCATG+AGG | + | chr1.4:1569014-1569033 | MS.gene90727:intron | 30.0% | |
| ATTTGGTATTAGTTATCCGA+AGG | + | chr1.4:1569681-1569700 | MS.gene90727:intron | 30.0% | |
| CAAGTTATAATCAATTCTGG+AGG | - | chr1.4:1569108-1569127 | None:intergenic | 30.0% | |
| CACTGTATTATTGGATTACA+AGG | + | chr1.4:1568663-1568682 | MS.gene90727:intron | 30.0% | |
| CATAATTACAGTGAATCTGT+AGG | + | chr1.4:1567929-1567948 | MS.gene90727:CDS | 30.0% | |
| CCAATGATGACATCAATAAA+AGG | + | chr1.4:1570541-1570560 | MS.gene90727:CDS | 30.0% | |
| CTTAAGGTAATGAGAGTTAA+GGG | - | chr1.4:1568374-1568393 | None:intergenic | 30.0% | |
| GAAATAGTTAATGTCCGAAA+GGG | + | chr1.4:1568415-1568434 | MS.gene90727:CDS | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | + | chr1.4:1570060-1570079 | MS.gene90727:CDS | 30.0% | |
| GACAAGTTAATGAATGTTGA+TGG | + | chr1.4:1570183-1570202 | MS.gene90727:CDS | 30.0% | |
| GCTTAACAACTTTAAGCTTA+TGG | + | chr1.4:1568724-1568743 | MS.gene90727:intron | 30.0% | |
| GTATTCTGATTAAGATCCAA+GGG | + | chr1.4:1569795-1569814 | MS.gene90727:intron | 30.0% | |
| GTGACTTCAAAAACTACAAT+AGG | + | chr1.4:1567487-1567506 | MS.gene90727:intron | 30.0% | |
| GTTGAAGTTTATGACATCTA+TGG | + | chr1.4:1567964-1567983 | MS.gene90727:CDS | 30.0% | |
| TAACATACACTTTAAGTGTC+AGG | - | chr1.4:1569829-1569848 | None:intergenic | 30.0% | |
| TACACAAACTCTGTTTCAAA+GGG | + | chr1.4:1567248-1567267 | MS.gene90727:intron | 30.0% | |
| TAGTATGTAACAAACGATTG+AGG | + | chr1.4:1568874-1568893 | MS.gene90727:intron | 30.0% | |
| TAGTCTAACAAATCAGTATC+TGG | - | chr1.4:1570591-1570610 | None:intergenic | 30.0% | |
| TATAATCCACATCCTTCAAT+AGG | + | chr1.4:1568289-1568308 | MS.gene90727:CDS | 30.0% | |
| TCCTTTGAGTCAATTGAATT+TGG | - | chr1.4:1569395-1569414 | None:intergenic | 30.0% | |
| TGAAATAGTTAATGTCCGAA+AGG | + | chr1.4:1568414-1568433 | MS.gene90727:CDS | 30.0% | |
| TGTTCATGTTAAACCTTTGT+TGG | - | chr1.4:1570347-1570366 | None:intergenic | 30.0% | |
| TGTTTGCATTAGAACCATTA+GGG | - | chr1.4:1568552-1568571 | None:intergenic | 30.0% | |
| TTGTTTGCATTAGAACCATT+AGG | - | chr1.4:1568553-1568572 | None:intergenic | 30.0% | |
| ! | AACAAAACTTTTGTCCATGT+TGG | + | chr1.4:1568624-1568643 | MS.gene90727:CDS | 30.0% |
| ! | AGATTAGGTTTAAAGCAACA+AGG | + | chr1.4:1567734-1567753 | MS.gene90727:intron | 30.0% |
| ! | AGATTTTCCATCAGAATCTT+TGG | - | chr1.4:1568500-1568519 | None:intergenic | 30.0% |
| ! | ATCAATTTTACCTCATGCAA+AGG | - | chr1.4:1569027-1569046 | None:intergenic | 30.0% |
| ! | ATGATTTTCTCTGAATCCTT+CGG | - | chr1.4:1569700-1569719 | None:intergenic | 30.0% |
| ! | CACCACTAACAATTAATTTG+AGG | - | chr1.4:1569173-1569192 | None:intergenic | 30.0% |
| ! | CCTTTTATTGATGTCATCAT+TGG | - | chr1.4:1570544-1570563 | None:intergenic | 30.0% |
| ! | GAATTGGTTTATTAATGCGA+GGG | + | chr1.4:1570011-1570030 | MS.gene90727:CDS | 30.0% |
| ! | TAAAAGGCGTAATCAAACAA+TGG | + | chr1.4:1570557-1570576 | MS.gene90727:CDS | 30.0% |
| ! | TAAGTCATATTCCTGTCTTT+TGG | + | chr1.4:1569948-1569967 | MS.gene90727:intron | 30.0% |
| ! | TAATAGCATTTTCCTCACTT+TGG | + | chr1.4:1567698-1567717 | MS.gene90727:intron | 30.0% |
| ! | TGAGGTAAAATTGATTCTGA+AGG | + | chr1.4:1569032-1569051 | MS.gene90727:intron | 30.0% |
| !! | AATGTGATGGATTCTAGAAT+TGG | + | chr1.4:1570306-1570325 | MS.gene90727:CDS | 30.0% |
| !! | ATGTGATGGATTCTAGAATT+GGG | + | chr1.4:1570307-1570326 | MS.gene90727:CDS | 30.0% |
| !! | CAAGTTGATTCCATTGTTTA+AGG | + | chr1.4:1567790-1567809 | MS.gene90727:CDS | 30.0% |
| !! | GATATAATTTGCTCATTGGT+TGG | + | chr1.4:1566865-1566884 | MS.gene90727:intron | 30.0% |
| !!! | ACTTTGTTGTTTTTCCAATC+CGG | - | chr1.4:1568452-1568471 | None:intergenic | 30.0% |
| AAACACACACAGAGACAAAA+TGG | - | chr1.4:1567591-1567610 | None:intergenic | 35.0% | |
| AACAACAAGGTCAAATTGCA+GGG | + | chr1.4:1570211-1570230 | MS.gene90727:CDS | 35.0% | |
| AAGTGAGAAGAAGGAAGAAA+GGG | - | chr1.4:1567020-1567039 | None:intergenic | 35.0% | |
| AATTACAGTGAATCTGTAGG+AGG | + | chr1.4:1567932-1567951 | MS.gene90727:CDS | 35.0% | |
| ACATATTGCCCCTTTCTATT+TGG | + | chr1.4:1568903-1568922 | MS.gene90727:intron | 35.0% | |
| ACTCTAATGCAAGTGAAACA+TGG | - | chr1.4:1570488-1570507 | None:intergenic | 35.0% | |
| AGCAGTGAATTGGTTACAAA+AGG | + | chr1.4:1568850-1568869 | MS.gene90727:intron | 35.0% | |
| ATATGCTGTCTATTGATCAG+GGG | + | chr1.4:1567999-1568018 | MS.gene90727:CDS | 35.0% | |
| CAAAACAATGTCAAAAGGGA+GGG | + | chr1.4:1568262-1568281 | MS.gene90727:CDS | 35.0% | |
| CAATCTATGCAAGTATCTTC+AGG | + | chr1.4:1568526-1568545 | MS.gene90727:CDS | 35.0% | |
| CCTATCTCAATCAACCAAAA+TGG | + | chr1.4:1570387-1570406 | MS.gene90727:CDS | 35.0% | |
| CCTTAACTCTCATTACCTTA+AGG | + | chr1.4:1568372-1568391 | MS.gene90727:CDS | 35.0% | |
| CCTTAAGGTAATGAGAGTTA+AGG | - | chr1.4:1568375-1568394 | None:intergenic | 35.0% | |
| CGATTCAACCAAATAGAAAG+GGG | - | chr1.4:1568914-1568933 | None:intergenic | 35.0% | |
| CGTATTCTGATTAAGATCCA+AGG | + | chr1.4:1569794-1569813 | MS.gene90727:intron | 35.0% | |
| CTTCAATAGGCCTTAATGAA+GGG | + | chr1.4:1568302-1568321 | MS.gene90727:CDS | 35.0% | |
| GAAATAGTACCTTTCAGGAT+AGG | - | chr1.4:1567069-1567088 | None:intergenic | 35.0% | |
| GAATATGCTGTCTATTGATC+AGG | + | chr1.4:1567997-1568016 | MS.gene90727:CDS | 35.0% | |
| GACGATTCAACCAAATAGAA+AGG | - | chr1.4:1568916-1568935 | None:intergenic | 35.0% | |
| GGATACATTGTAAGCAAGAT+TGG | - | chr1.4:1567848-1567867 | None:intergenic | 35.0% | |
| GGATACTGATATTGAAAGGA+AGG | - | chr1.4:1568130-1568149 | None:intergenic | 35.0% | |
| GGATTCAAAGTAGTGATCAT+TGG | + | chr1.4:1570280-1570299 | MS.gene90727:CDS | 35.0% | |
| GGATTCAGAGAAAATCATGT+TGG | + | chr1.4:1569702-1569721 | MS.gene90727:CDS | 35.0% | |
| GTACACAAACTCTGTTTCAA+AGG | + | chr1.4:1567247-1567266 | MS.gene90727:intron | 35.0% | |
| TCAAAACAATGTCAAAAGGG+AGG | + | chr1.4:1568261-1568280 | MS.gene90727:CDS | 35.0% | |
| TCAATCAACCAAAATGGTGA+TGG | + | chr1.4:1570393-1570412 | MS.gene90727:CDS | 35.0% | |
| TCATAATTGTACCTGGTTTC+TGG | - | chr1.4:1569746-1569765 | None:intergenic | 35.0% | |
| TCCTTTCAATATCAGTATCC+CGG | + | chr1.4:1568130-1568149 | MS.gene90727:CDS | 35.0% | |
| TGATCATTGGACAAATGTGA+TGG | + | chr1.4:1570293-1570312 | MS.gene90727:CDS | 35.0% | |
| TTGTACATTTCTTCGACCAT+TGG | - | chr1.4:1570051-1570070 | None:intergenic | 35.0% | |
| TTTCACTTGCATTAGAGTTG+AGG | + | chr1.4:1570490-1570509 | MS.gene90727:CDS | 35.0% | |
| ! | AAAAAAGATGGTGGTGATGA+TGG | + | chr1.4:1567201-1567220 | MS.gene90727:intron | 35.0% |
| ! | CAAAGAAGAGTTTGGTGATT+CGG | + | chr1.4:1570068-1570087 | MS.gene90727:CDS | 35.0% |
| ! | CGAATTGGTTTATTAATGCG+AGG | + | chr1.4:1570010-1570029 | MS.gene90727:CDS | 35.0% |
| ! | GAGATAGGTGGATTTGAATA+AGG | - | chr1.4:1570375-1570394 | None:intergenic | 35.0% |
| ! | GAGTTGAATAACTTTGGTGT+TGG | + | chr1.4:1570459-1570478 | MS.gene90727:CDS | 35.0% |
| ! | GCATTTGATGACAGTATTGT+CGG | - | chr1.4:1569254-1569273 | None:intergenic | 35.0% |
| ! | GCCAAATTCAATTGACTCAA+AGG | + | chr1.4:1569391-1569410 | MS.gene90727:CDS | 35.0% |
| ! | TCTAGAATTGGGAAAATGCA+AGG | + | chr1.4:1570318-1570337 | MS.gene90727:CDS | 35.0% |
| ! | TGTTGTGTCATCTTTTGACA+TGG | + | chr1.4:1569278-1569297 | MS.gene90727:CDS | 35.0% |
| !! | AACTCTGAAAGTGATGGATT+TGG | + | chr1.4:1570513-1570532 | MS.gene90727:CDS | 35.0% |
| !! | TTGAATAACTTTGGTGTTGG+TGG | + | chr1.4:1570462-1570481 | MS.gene90727:CDS | 35.0% |
| !! | TTTTGGTTGATTGAGATAGG+TGG | - | chr1.4:1570387-1570406 | None:intergenic | 35.0% |
| !!! | CCATTTTGGTTGATTGAGAT+AGG | - | chr1.4:1570390-1570409 | None:intergenic | 35.0% |
| AAAGACAAGAATCCACAGTG+TGG | - | chr1.4:1566952-1566971 | None:intergenic | 40.0% | |
| AAAGGGAAGAAGAGGTTAAG+AGG | - | chr1.4:1567003-1567022 | None:intergenic | 40.0% | |
| AAATGCAAGGTGACCAACAA+AGG | + | chr1.4:1570331-1570350 | MS.gene90727:CDS | 40.0% | |
| AAGACAAGAATCCACAGTGT+GGG | - | chr1.4:1566951-1566970 | None:intergenic | 40.0% | |
| AAGGTTTACCTCATCCAACA+TGG | - | chr1.4:1568641-1568660 | None:intergenic | 40.0% | |
| AATCCCTCTATCCAATTCTG+TGG | - | chr1.4:1570265-1570284 | None:intergenic | 40.0% | |
| AATGAGTATAGGGGAACCTA+CGG | - | chr1.4:1569591-1569610 | None:intergenic | 40.0% | |
| ACAAACTCGTGCAACAAATG+TGG | - | chr1.4:1570657-1570676 | None:intergenic | 40.0% | |
| ATCATGTTGGCAAGACAAAC+AGG | + | chr1.4:1569715-1569734 | MS.gene90727:CDS | 40.0% | |
| ATTCATATCAGGTGGCGAAT+TGG | + | chr1.4:1569995-1570014 | MS.gene90727:intron | 40.0% | |
| CAAACTCGTGCAACAAATGT+GGG | - | chr1.4:1570656-1570675 | None:intergenic | 40.0% | |
| CAACCACAGAATTGGATAGA+GGG | + | chr1.4:1570259-1570278 | MS.gene90727:CDS | 40.0% | |
| CAGTAGCAATAGCAGTGAAT+TGG | + | chr1.4:1568840-1568859 | MS.gene90727:intron | 40.0% | |
| CCTTCAATAGGCCTTAATGA+AGG | + | chr1.4:1568301-1568320 | MS.gene90727:CDS | 40.0% | |
| CCTTCATTAAGGCCTATTGA+AGG | - | chr1.4:1568304-1568323 | None:intergenic | 40.0% | |
| CGCAAATCTCAAACTTGAAG+GGG | + | chr1.4:1568179-1568198 | MS.gene90727:CDS | 40.0% | |
| CTTTCTGCTCCCTTAAACAA+TGG | - | chr1.4:1567803-1567822 | None:intergenic | 40.0% | |
| GAAAAGGTGAAGTGAGAAGA+AGG | - | chr1.4:1567029-1567048 | None:intergenic | 40.0% | |
| GAACAACAAGGTCAAATTGC+AGG | + | chr1.4:1570210-1570229 | MS.gene90727:CDS | 40.0% | |
| GAAGTGAGAAGAAGGAAGAA+AGG | - | chr1.4:1567021-1567040 | None:intergenic | 40.0% | |
| GATCAGATTGCCCTTCATTA+AGG | - | chr1.4:1568315-1568334 | None:intergenic | 40.0% | |
| GATGCTTCCAAAGATTCTGA+TGG | + | chr1.4:1568490-1568509 | MS.gene90727:CDS | 40.0% | |
| GCGCAAATCTCAAACTTGAA+GGG | + | chr1.4:1568178-1568197 | MS.gene90727:CDS | 40.0% | |
| GGAAAGCAACAACACAAGTT+TGG | + | chr1.4:1570627-1570646 | MS.gene90727:CDS | 40.0% | |
| TCAACCACAGAATTGGATAG+AGG | + | chr1.4:1570258-1570277 | MS.gene90727:CDS | 40.0% | |
| TCGAGTGTGGGATGATAAAA+GGG | + | chr1.4:1570149-1570168 | MS.gene90727:CDS | 40.0% | |
| TCTATCCAATTCTGTGGTTG+AGG | - | chr1.4:1570259-1570278 | None:intergenic | 40.0% | |
| TGCATCTCTTAAGGATGATG+AGG | + | chr1.4:1568204-1568223 | MS.gene90727:CDS | 40.0% | |
| TGCGCAAATCTCAAACTTGA+AGG | + | chr1.4:1568177-1568196 | MS.gene90727:CDS | 40.0% | |
| TGTTTGCGTGATGCTATTAG+CGG | + | chr1.4:1569369-1569388 | MS.gene90727:CDS | 40.0% | |
| TTAAGGCCTATTGAAGGATG+TGG | - | chr1.4:1568298-1568317 | None:intergenic | 40.0% | |
| TTCGAGTGTGGGATGATAAA+AGG | + | chr1.4:1570148-1570167 | MS.gene90727:CDS | 40.0% | |
| TTGGTGTAATGAGACAAGCT+TGG | + | chr1.4:1569493-1569512 | MS.gene90727:CDS | 40.0% | |
| ! | ACTTTTGTCCATGTTGGATG+AGG | + | chr1.4:1568630-1568649 | MS.gene90727:CDS | 40.0% |
| ! | CAACAAAGTTTTCGTGATGC+TGG | + | chr1.4:1568463-1568482 | MS.gene90727:CDS | 40.0% |
| ! | TCATCTTTTGACATGGTTGC+TGG | + | chr1.4:1569285-1569304 | MS.gene90727:CDS | 40.0% |
| ! | TTATGCAGCCATCACCATTT+TGG | - | chr1.4:1570404-1570423 | None:intergenic | 40.0% |
| ! | TTGAGGAACTCTGAAAGTGA+TGG | + | chr1.4:1570507-1570526 | MS.gene90727:CDS | 40.0% |
| !! | AAATGGTGATGGCTGCATAA+TGG | + | chr1.4:1570404-1570423 | MS.gene90727:CDS | 40.0% |
| !! | AGTATTGACACAGAGCTTTC+AGG | - | chr1.4:1569537-1569556 | None:intergenic | 40.0% |
| !! | GTGTCAGGTTATTTTACCCT+TGG | - | chr1.4:1569814-1569833 | None:intergenic | 40.0% |
| !! | TGAGAGTTAAGGGCATTGTT+CGG | - | chr1.4:1568364-1568383 | None:intergenic | 40.0% |
| AAGATCCCGAAGAAAACGCT+TGG | - | chr1.4:1567874-1567893 | None:intergenic | 45.0% | |
| AATAAATGCTGTCGTTCCGC+AGG | - | chr1.4:1568595-1568614 | None:intergenic | 45.0% | |
| AATATGACTTAGTGCGCGTC+TGG | - | chr1.4:1569939-1569958 | None:intergenic | 45.0% | |
| AGACAAGAATCCACAGTGTG+GGG | - | chr1.4:1566950-1566969 | None:intergenic | 45.0% | |
| AGACGATGATGTTCGAGTGT+GGG | + | chr1.4:1570137-1570156 | MS.gene90727:CDS | 45.0% | |
| AGCAAGAGCAGTGTATGGTT+CGG | - | chr1.4:1569322-1569341 | None:intergenic | 45.0% | |
| ATCCAATTCTGTGGTTGAGG+AGG | - | chr1.4:1570256-1570275 | None:intergenic | 45.0% | |
| ATCCTCCTCAACCACAGAAT+TGG | + | chr1.4:1570251-1570270 | MS.gene90727:CDS | 45.0% | |
| ATGGCATCTTTGTCTTCTGG+AGG | + | chr1.4:1568235-1568254 | MS.gene90727:CDS | 45.0% | |
| CAAAAAGCTCTTCAGCAGCT+TGG | + | chr1.4:1569474-1569493 | MS.gene90727:CDS | 45.0% | |
| CAAGTATCTTCAGGCCCTAA+TGG | + | chr1.4:1568535-1568554 | MS.gene90727:CDS | 45.0% | |
| CACACACAGAGACAAAATGG+AGG | - | chr1.4:1567588-1567607 | None:intergenic | 45.0% | |
| CGAAAGGGCTTGAAACAAAC+CGG | + | chr1.4:1568430-1568449 | MS.gene90727:CDS | 45.0% | |
| CTTACGCGGAGATGATATCT+GGG | + | chr1.4:1567891-1567910 | MS.gene90727:CDS | 45.0% | |
| GAAGGAAGAAAGGGAAGAAG+AGG | - | chr1.4:1567011-1567030 | None:intergenic | 45.0% | |
| GAATAACTGCTGATCCTTGC+AGG | - | chr1.4:1568342-1568361 | None:intergenic | 45.0% | |
| GACTATCACTTCACAGACTC+TGG | + | chr1.4:1570606-1570625 | MS.gene90727:CDS | 45.0% | |
| GAGCAAAACGTACAATGCCA+GGG | + | chr1.4:1568076-1568095 | MS.gene90727:CDS | 45.0% | |
| GATTTGCGCATTCATTAGCG+AGG | - | chr1.4:1568167-1568186 | None:intergenic | 45.0% | |
| GCAAGTAGCAACCAAAAGAC+AGG | - | chr1.4:1569962-1569981 | None:intergenic | 45.0% | |
| GCCGGGATACTGATATTGAA+AGG | - | chr1.4:1568134-1568153 | None:intergenic | 45.0% | |
| TAAGCTGCTGATCGACATAG+CGG | - | chr1.4:1569449-1569468 | None:intergenic | 45.0% | |
| TCATCGTCTCTCAGAGCTTT+CGG | - | chr1.4:1570126-1570145 | None:intergenic | 45.0% | |
| TCATTACCTTAAGGCAGCAC+AGG | + | chr1.4:1568381-1568400 | MS.gene90727:CDS | 45.0% | |
| TCTTACGCGGAGATGATATC+TGG | + | chr1.4:1567890-1567909 | MS.gene90727:CDS | 45.0% | |
| TGCATGGCATCTTTGTCTTC+TGG | + | chr1.4:1568232-1568251 | MS.gene90727:CDS | 45.0% | |
| TGCGGAACGACAGCATTTAT+TGG | + | chr1.4:1568594-1568613 | MS.gene90727:CDS | 45.0% | |
| ! | AGAGACAAAATGGAGGTACG+AGG | - | chr1.4:1567581-1567600 | None:intergenic | 45.0% |
| ! | CAATTGACTCAAAGGAGCCT+TGG | + | chr1.4:1569399-1569418 | MS.gene90727:CDS | 45.0% |
| ! | CGGTTTGTTTCAAGCCCTTT+CGG | - | chr1.4:1568432-1568451 | None:intergenic | 45.0% |
| ! | GTTTTCTTCGGGATCTTACG+CGG | + | chr1.4:1567877-1567896 | MS.gene90727:CDS | 45.0% |
| ! | TCCGAACCAAGCGTTTTCTT+CGG | + | chr1.4:1567865-1567884 | MS.gene90727:CDS | 45.0% |
| ! | TTTGACATGGTTGCTGGTTG+CGG | + | chr1.4:1569291-1569310 | MS.gene90727:CDS | 45.0% |
| !! | GTTGATGGTGCTGAACAACA+AGG | + | chr1.4:1570198-1570217 | MS.gene90727:CDS | 45.0% |
| !! | ATTTGAAAAATATATATATT+TGG | - | chr1.4:1566893-1566912 | None:intergenic | 5.0% |
| AACAGGCTTGACCAGAAACC+AGG | + | chr1.4:1569732-1569751 | MS.gene90727:CDS | 50.0% | |
| AAGAATCCACAGTGTGGGGA+AGG | - | chr1.4:1566946-1566965 | None:intergenic | 50.0% | |
| AATGCTCGAAGAGCCATGCA+CGG | - | chr1.4:1569560-1569579 | None:intergenic | 50.0% | |
| ACCTTTCAGGATAGGGAGAG+AGG | - | chr1.4:1567061-1567080 | None:intergenic | 50.0% | |
| ACGCAAACAGCGAAAGTGAC+GGG | - | chr1.4:1569358-1569377 | None:intergenic | 50.0% | |
| AGAGAGGAAGAGGAGGGAAA+AGG | - | chr1.4:1567045-1567064 | None:intergenic | 50.0% | |
| AGCGATCCAAGGACACAGTT+CGG | + | chr1.4:1568040-1568059 | MS.gene90727:CDS | 50.0% | |
| ATAGGGAGAGAGGAAGAGGA+GGG | - | chr1.4:1567051-1567070 | None:intergenic | 50.0% | |
| ATAGGGGAACCTACGGATGA+AGG | - | chr1.4:1569584-1569603 | None:intergenic | 50.0% | |
| ATGCTAGTACGAGCGATCCA+AGG | + | chr1.4:1568029-1568048 | MS.gene90727:CDS | 50.0% | |
| CACGCAAACAGCGAAAGTGA+CGG | - | chr1.4:1569359-1569378 | None:intergenic | 50.0% | |
| CCCGAAGAAAACGCTTGGTT+CGG | - | chr1.4:1567869-1567888 | None:intergenic | 50.0% | |
| CGAGCAAAACGTACAATGCC+AGG | + | chr1.4:1568075-1568094 | MS.gene90727:CDS | 50.0% | |
| CGAGCATTTCCTTCATCCGT+AGG | + | chr1.4:1569572-1569591 | MS.gene90727:intron | 50.0% | |
| CGCAAAGCAAGAGCAGTGTA+TGG | - | chr1.4:1569327-1569346 | None:intergenic | 50.0% | |
| CTGTGTCAATACTCCGTGCA+TGG | + | chr1.4:1569544-1569563 | MS.gene90727:CDS | 50.0% | |
| CTTTCAGGAAGTCCTCTCTG+AGG | - | chr1.4:1569522-1569541 | None:intergenic | 50.0% | |
| GAAGGGGTCTGCATCTCTTA+AGG | + | chr1.4:1568195-1568214 | MS.gene90727:CDS | 50.0% | |
| GAAGTTCCTGTGCTGCCTTA+AGG | - | chr1.4:1568390-1568409 | None:intergenic | 50.0% | |
| GAGACGATGATGTTCGAGTG+TGG | + | chr1.4:1570136-1570155 | MS.gene90727:CDS | 50.0% | |
| GGGCTTGAAACAAACCGGAT+TGG | + | chr1.4:1568435-1568454 | MS.gene90727:CDS | 50.0% | |
| GTATTCCCTCCTGTTCTCCA+AGG | - | chr1.4:1569419-1569438 | None:intergenic | 50.0% | |
| TAGCGAGGTGAAACTGTTGC+CGG | - | chr1.4:1568152-1568171 | None:intergenic | 50.0% | |
| TCAAAGGAGCCTTGGAGAAC+AGG | + | chr1.4:1569407-1569426 | MS.gene90727:CDS | 50.0% | |
| TCCTCTCTCCCTATCCTGAA+AGG | + | chr1.4:1567057-1567076 | MS.gene90727:intron | 50.0% | |
| TGGATCGCTCGTACTAGCAT+TGG | - | chr1.4:1568029-1568048 | None:intergenic | 50.0% | |
| TTCATGTGAGCTATCGCCTG+CGG | + | chr1.4:1568576-1568595 | MS.gene90727:CDS | 50.0% | |
| TTGTCCCAAGGCTAAGAGAC+AGG | - | chr1.4:1568102-1568121 | None:intergenic | 50.0% | |
| ! | ACAGCGAAAGTGACGGGAAA+TGG | - | chr1.4:1569352-1569371 | None:intergenic | 50.0% |
| ! | CCGAACCAAGCGTTTTCTTC+GGG | + | chr1.4:1567866-1567885 | MS.gene90727:CDS | 50.0% |
| ! | GGTGCGTCTTTGGAAACCAA+TGG | + | chr1.4:1570032-1570051 | MS.gene90727:CDS | 50.0% |
| ! | TTAATGCGAGGGTGCGTCTT+TGG | + | chr1.4:1570022-1570041 | MS.gene90727:CDS | 50.0% |
| !! | AGGAAGGCATCATTGTCCCA+AGG | - | chr1.4:1568114-1568133 | None:intergenic | 50.0% |
| AAGGAGCCTTGGAGAACAGG+AGG | + | chr1.4:1569410-1569429 | MS.gene90727:CDS | 55.0% | |
| ACGAGTCCGAACTGTGTCCT+TGG | - | chr1.4:1568049-1568068 | None:intergenic | 55.0% | |
| ACTGCTGATCCTTGCAGGCA+CGG | - | chr1.4:1568337-1568356 | None:intergenic | 55.0% | |
| AGCGAGGTGAAACTGTTGCC+GGG | - | chr1.4:1568151-1568170 | None:intergenic | 55.0% | |
| AGGAGCCTTGGAGAACAGGA+GGG | + | chr1.4:1569411-1569430 | MS.gene90727:CDS | 55.0% | |
| CAAGCTTGGAGACCTCAGAG+AGG | + | chr1.4:1569507-1569526 | MS.gene90727:CDS | 55.0% | |
| CAATCTGATCCGTGCCTGCA+AGG | + | chr1.4:1568325-1568344 | MS.gene90727:CDS | 55.0% | |
| CAGGATAGGGAGAGAGGAAG+AGG | - | chr1.4:1567055-1567074 | None:intergenic | 55.0% | |
| GATAGGGAGAGAGGAAGAGG+AGG | - | chr1.4:1567052-1567071 | None:intergenic | 55.0% | |
| GGATGATGAGGCTGAGTGCA+TGG | + | chr1.4:1568216-1568235 | MS.gene90727:CDS | 55.0% | |
| TGTGGGGAAGGTCAGACAAG+TGG | - | chr1.4:1566934-1566953 | None:intergenic | 55.0% | |
| ! | AGGGCCTGTCTCTTAGCCTT+GGG | + | chr1.4:1568095-1568114 | MS.gene90727:CDS | 55.0% |
| ! | TGATCGACATAGCGGAGACG+AGG | - | chr1.4:1569441-1569460 | None:intergenic | 55.0% |
| CAAGGCTAAGAGACAGGCCC+TGG | - | chr1.4:1568096-1568115 | None:intergenic | 60.0% | |
| CAGGGCCTGTCTCTTAGCCT+TGG | + | chr1.4:1568094-1568113 | MS.gene90727:CDS | 60.0% | |
| GTCTGACCTTCCCCACACTG+TGG | + | chr1.4:1566937-1566956 | MS.gene90727:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 1566830 | 1570683 | 1566830 | ID=MS.gene90727 |
| chr1.4 | mRNA | 1566830 | 1570683 | 1566830 | ID=MS.gene90727.t1;Parent=MS.gene90727 |
| chr1.4 | exon | 1566830 | 1566838 | 1566830 | ID=MS.gene90727.t1.exon1;Parent=MS.gene90727.t1 |
| chr1.4 | CDS | 1566830 | 1566838 | 1566830 | ID=cds.MS.gene90727.t1;Parent=MS.gene90727.t1 |
| chr1.4 | exon | 1567568 | 1567662 | 1567568 | ID=MS.gene90727.t1.exon2;Parent=MS.gene90727.t1 |
| chr1.4 | CDS | 1567568 | 1567662 | 1567568 | ID=cds.MS.gene90727.t1;Parent=MS.gene90727.t1 |
| chr1.4 | exon | 1567736 | 1568651 | 1567736 | ID=MS.gene90727.t1.exon3;Parent=MS.gene90727.t1 |
| chr1.4 | CDS | 1567736 | 1568651 | 1567736 | ID=cds.MS.gene90727.t1;Parent=MS.gene90727.t1 |
| chr1.4 | exon | 1569237 | 1569589 | 1569237 | ID=MS.gene90727.t1.exon4;Parent=MS.gene90727.t1 |
| chr1.4 | CDS | 1569237 | 1569589 | 1569237 | ID=cds.MS.gene90727.t1;Parent=MS.gene90727.t1 |
| chr1.4 | exon | 1569693 | 1569753 | 1569693 | ID=MS.gene90727.t1.exon5;Parent=MS.gene90727.t1 |
| chr1.4 | CDS | 1569693 | 1569753 | 1569693 | ID=cds.MS.gene90727.t1;Parent=MS.gene90727.t1 |
| chr1.4 | exon | 1570006 | 1570683 | 1570006 | ID=MS.gene90727.t1.exon6;Parent=MS.gene90727.t1 |
| chr1.4 | CDS | 1570006 | 1570683 | 1570006 | ID=cds.MS.gene90727.t1;Parent=MS.gene90727.t1 |
| Gene Sequence |
| Protein sequence |
