AlfalfaGEDB | MS.gene90922

M. sativa cultivar XinJiangDaYe / MS.gene90922

KEGG: K08237
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90922.t1	XP_024630350.1	90.6	470	44	0	1	470	1	470	5.20E-245	856.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90922.t1	Q9AR73	48.8	469	234	4	1	467	1	465	1.1e-129	464.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90922.t1	A0A072TSC3	90.6	470	44	0	1	470	16	485	3.7e-245	856.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049283	MS.gene90922	0.809343	1.98E-50	-1.69E-46
MS.gene049499	MS.gene90922	0.804078	2.57E-49	-1.69E-46
MS.gene049983	MS.gene90922	0.813461	2.53E-51	-1.69E-46
MS.gene050238	MS.gene90922	0.806167	9.38E-50	-1.69E-46
MS.gene050414	MS.gene90922	0.811035	8.56E-51	-1.69E-46
MS.gene050562	MS.gene90922	0.802502	5.44E-49	-1.69E-46
MS.gene051279	MS.gene90922	0.851271	9.89E-61	-1.69E-46
MS.gene051821	MS.gene90922	0.81317	2.93E-51	-1.69E-46
MS.gene051823	MS.gene90922	0.820105	8.18E-53	-1.69E-46
MS.gene052016	MS.gene90922	0.830516	2.81E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90922.t1	MTR_0184s0040	90.638	470	44	0	1	470	16	485	0.0	878
MS.gene90922.t1	MTR_0078s0190	90.638	470	44	0	1	470	16	485	0.0	878
MS.gene90922.t1	MTR_0078s0010	85.532	470	67	1	1	469	1	470	0.0	819
MS.gene90922.t1	MTR_7g047030	83.686	472	74	2	1	470	1	471	0.0	797
MS.gene90922.t1	MTR_7g047270	83.686	472	74	2	1	470	1	471	0.0	797
MS.gene90922.t1	MTR_0078s0060	82.839	472	77	3	1	470	1	470	0.0	775
MS.gene90922.t1	MTR_8g009067	56.503	469	203	1	1	469	1	468	0.0	541
MS.gene90922.t1	MTR_8g008970	55.224	469	209	1	1	469	1	468	0.0	537
MS.gene90922.t1	MTR_8g008970	50.000	282	123	3	188	468	527	791	1.04e-81	269
MS.gene90922.t1	MTR_8g009073	55.106	470	206	2	1	468	1	467	0.0	532

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90922.t1	AT4G01070	47.537	467	241	4	2	466	4	468	5.65e-156	451
MS.gene90922.t1	AT1G01420	46.004	463	245	5	6	466	8	467	1.82e-149	435
MS.gene90922.t1	AT1G01420	46.004	463	245	5	6	466	11	470	2.52e-149	435
MS.gene90922.t1	AT1G01390	47.009	468	244	4	2	467	4	469	5.74e-146	426
MS.gene90922.t1	AT1G01390	47.009	468	244	4	2	467	21	486	6.02e-146	426
MS.gene90922.t1	AT4G01070	46.110	347	181	5	2	346	4	346	2.87e-100	305
MS.gene90922.t1	AT3G50740	37.344	482	275	12	4	468	5	476	1.78e-98	305
MS.gene90922.t1	AT5G66690	36.059	477	282	12	4	468	5	470	3.55e-96	298
MS.gene90922.t1	AT5G26310	35.639	477	284	11	4	468	5	470	2.72e-94	293
MS.gene90922.t1	AT2G18570	34.034	476	282	13	6	464	5	465	4.09e-88	277

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Find 77 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCCTTGTAACTTTAT+AGG	0.215117	7.3:+56372869	None:intergenic
AAAGATTCATTTGGGTTGTG+AGG	0.546895	7.3:-56372475	MS.gene90922:CDS
AAAGTACAAAAGCTGAAGAA+GGG	0.573723	7.3:+56372957	None:intergenic
AAATATGATTAAGTGTGTGA+TGG	0.613599	7.3:-56372111	MS.gene90922:CDS
AACAATGGCCAAGCTACTAT+TGG	0.445439	7.3:+56372236	None:intergenic
AACCAACAAGACTTACCTCA+AGG	0.611556	7.3:-56373154	MS.gene90922:CDS
AACTTTGGAGAGTATACAAG+AGG	0.593353	7.3:-56372264	MS.gene90922:CDS
AAGATTCATTTGGGTTGTGA+GGG	0.542374	7.3:-56372474	MS.gene90922:CDS
AAGATTGAGTTTATGTTTGG+TGG	0.409693	7.3:+56373190	None:intergenic
AAGGCTTGATTCTGCCATCA+TGG	0.472439	7.3:-56372355	MS.gene90922:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTACAAAAGCTGAAGAA+GGG	+	chr7.3:56372381-56372400	None:intergenic	30.0%
AAGATTGAGTTTATGTTTGG+TGG	+	chr7.3:56372148-56372167	None:intergenic	30.0%
AAGTGACATGAAAATTTGGA+TGG	+	chr7.3:56372066-56372085	None:intergenic	30.0%
ACGTGCAAAAAATATGCATT+TGG	-	chr7.3:56372561-56372580	MS.gene90922:CDS	30.0%
ATATGAAGATGATGACATTG+TGG	-	chr7.3:56373185-56373204	MS.gene90922:CDS	30.0%
ATGCAAGTGACATGAAAATT+TGG	+	chr7.3:56372070-56372089	None:intergenic	30.0%
CAAGAACCTATAAAGTTACA+AGG	-	chr7.3:56372460-56372479	MS.gene90922:CDS	30.0%
TCAAGTAACAATGATGTTGT+TGG	-	chr7.3:56372703-56372722	MS.gene90922:CDS	30.0%
TGCTTAAGTATTTCAACTTG+AGG	+	chr7.3:56373009-56373028	None:intergenic	30.0%
TTGGAACGAACAAAAGAAAA+AGG	-	chr7.3:56372961-56372980	MS.gene90922:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	56371971	56373386	56371971	ID=MS.gene90922
chr7.3	mRNA	56371971	56373386	56371971	ID=MS.gene90922.t1;Parent=MS.gene90922
chr7.3	exon	56371971	56373386	56371971	ID=MS.gene90922.t1.exon1;Parent=MS.gene90922.t1
chr7.3	CDS	56371971	56373386	56371971	ID=cds.MS.gene90922.t1;Parent=MS.gene90922.t1

Gene Sequence

>MS.gene90922

ATGGCAAAAAAAACCCACATAGCTGTTATTCCAAGTCCTGGTTTCAGCCACTTAGTCCCAATAGTAGAATTCACCAAAAGATTAGTCACAAACCATCCAAATTTTCATGTCACTTGCATCATTCCTTCACTTGGTTCACCGCCAGATTCATCAAAATCCTATCTTCAAACAATTCCACCAAACATAAACTCAATCTTTCTTCCACCAATCAACCAACAAGACTTACCTCAAGGAGTATATCCAGCAATCCTGATTCAACAAACTGTTACACTCTCTCTACCATCAATTCATCAAGCTCTCAAATCATTGAATTCAAAAGCACCTTTAGCGGCTATAATTGCTGATATTTTTGCACTAGAAACAATAGGTTTTGCAAAAGAGTTCAACTCTTTGTTTTTTCTTTACTTCCCTTCTTCAGCTTTTGTACTTTCACTTGTTTTACATATGCCAAAACTTGATGAAGAGGTTTCATGTGAATACAAAGAATTACAAGAACCTATAAAGTTACAAGGATGTTTACCAATCAATGGTATTGATCTTCCAACACCAACAAAAGATAGATCAAGCGTAGCTTACAAAATGCTTCTTCAACGTGCAAAAAATATGCATTTGGTTGATGGAATCTTGTTTAATAGCTTCTTAGAATTAGAATCAAGTGCTATAAAAGCATTGGAACAAAAGGGTGATGGAAAAATCAGCTTTTTTCCTGTGGGACCCATTACACAAATAGGGTCAAGTAACAATGATGTTGTTGGTGATGAACATGAATGTTTGAAATGGTTGAAAAACCAACCACAAAATTCTGTTTTGTATGTTTCTTTTGGAAGTGGTGGAACACTTTCTCAAAGACAAATCAATGAACTAGCTTTTGGTTTGGAATTGAGTGGTCAAAGATTCATTTGGGTTGTGAGGGCACCAAGTGATTCAGTTAGTGCTGCTTATCTTGAAATTACTAGTGAAGATCCTTTGAAATTTTTACCAAAAGGGTTTTTGGAACGAACAAAAGAAAAAGGCTTGATTCTGCCATCATGGGCTCCTCAAGTTGAAATACTTAAGCAAAATTCAGTTGGTGCATTTTTAAGTCATTGTGGTTGGAATTCAACTTTGGAGAGTATACAAGAGGGGGTGCCAATAGTAGCTTGGCCATTGTTTGCGGAACAAGCAACGAATGTTGTTATGTTATGTGATGGTCTTAAAGTGGCTTTAAGGTTGAAATATGAAGATGATGACATTGTGGTAAAGGAGAAAATTGAAAATATGATTAAGTGTGTGATGGAAGGAGAAGAAGGTAAGCGAATGCGTGAAAGAATGAAGAGTTTAAAAGAATATGCTGCTAATGCACTAAAAGATGGTGGTTCTTCAATACAGACTTTGTCACACCTGGCTAGTCAATGGGAAAATTTTGGTGGGAATTAG

Protein sequence

>MS.gene90922.t1

MAKKTHIAVIPSPGFSHLVPIVEFTKRLVTNHPNFHVTCIIPSLGSPPDSSKSYLQTIPPNINSIFLPPINQQDLPQGVYPAILIQQTVTLSLPSIHQALKSLNSKAPLAAIIADIFALETIGFAKEFNSLFFLYFPSSAFVLSLVLHMPKLDEEVSCEYKELQEPIKLQGCLPINGIDLPTPTKDRSSVAYKMLLQRAKNMHLVDGILFNSFLELESSAIKALEQKGDGKISFFPVGPITQIGSSNNDVVGDEHECLKWLKNQPQNSVLYVSFGSGGTLSQRQINELAFGLELSGQRFIWVVRAPSDSVSAAYLEITSEDPLKFLPKGFLERTKEKGLILPSWAPQVEILKQNSVGAFLSHCGWNSTLESIQEGVPIVAWPLFAEQATNVVMLCDGLKVALRLKYEDDDIVVKEKIENMIKCVMEGEEGKRMRERMKSLKEYAANALKDGGSSIQTLSHLASQWENFGGN