Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91337.t1 | XP_013469962.1 | 97.6 | 704 | 17 | 0 | 21 | 724 | 163 | 866 | 0.00E+00 | 1184.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91337.t1 | B6EUA9 | 51.6 | 715 | 280 | 12 | 18 | 722 | 147 | 805 | 1.4e-143 | 511.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91337.t1 | A0A072W136 | 97.6 | 704 | 17 | 0 | 21 | 724 | 163 | 866 | 0.0e+00 | 1184.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene91337 | 0.810618 | 1.05E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene91337 | 0.81165 | 6.30E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene91337 | 0.80743 | 5.08E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene91337 | 0.820826 | 5.59E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene91337 | 0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene91337 | 0.807668 | 4.52E-50 | -1.69E-46 |
| MS.gene050799 | MS.gene91337 | 0.814302 | 1.65E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene91337 | 0.809283 | 2.04E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene91337 | 0.831603 | 1.52E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene91337 | 0.81641 | 5.61E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene91337 | 0.827807 | 1.28E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene91337 | 0.808571 | 2.90E-50 | -1.69E-46 |
| MS.gene053966 | MS.gene91337 | 0.812973 | 3.24E-51 | -1.69E-46 |
| MS.gene053967 | MS.gene91337 | 0.823028 | 1.73E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene91337 | 0.815459 | 9.15E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene91337 | 0.83229 | 1.03E-55 | -1.69E-46 |
| MS.gene055166 | MS.gene91337 | 0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene91337 | 0.805301 | 1.43E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene91337 | 0.803792 | 2.94E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene91337 | 0.818685 | 1.72E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene91337 | 0.808529 | 2.96E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene91337 | 0.801321 | 9.51E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene91337 | 0.801435 | 9.02E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene91337 | 0.829201 | 5.88E-55 | -1.69E-46 |
| MS.gene058008 | MS.gene91337 | 0.802876 | 4.56E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene91337 | 0.827754 | 1.31E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene91337 | 0.812952 | 3.27E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene91337 | 0.839658 | 1.39E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene91337 | 0.813733 | 2.20E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene91337 | 0.818908 | 1.53E-52 | -1.69E-46 |
| MS.gene059272 | MS.gene91337 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene91337 | 0.813109 | 3.02E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 11162 | gene | 6651 | 19188 | 6651 | ID=MS.gene91337 |
| 11162 | mRNA | 6651 | 19188 | 6651 | ID=MS.gene91337.t1;Parent=MS.gene91337 |
| 11162 | exon | 19014 | 19188 | 19014 | ID=MS.gene91337.t1.exon1;Parent=MS.gene91337.t1 |
| 11162 | CDS | 19014 | 19188 | 19014 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 18849 | 18925 | 18849 | ID=MS.gene91337.t1.exon2;Parent=MS.gene91337.t1 |
| 11162 | CDS | 18849 | 18925 | 18849 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 18169 | 18238 | 18169 | ID=MS.gene91337.t1.exon3;Parent=MS.gene91337.t1 |
| 11162 | CDS | 18169 | 18238 | 18169 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 15767 | 15819 | 15767 | ID=MS.gene91337.t1.exon4;Parent=MS.gene91337.t1 |
| 11162 | CDS | 15767 | 15819 | 15767 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 15620 | 15677 | 15620 | ID=MS.gene91337.t1.exon5;Parent=MS.gene91337.t1 |
| 11162 | CDS | 15620 | 15677 | 15620 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 15142 | 15506 | 15142 | ID=MS.gene91337.t1.exon6;Parent=MS.gene91337.t1 |
| 11162 | CDS | 15142 | 15506 | 15142 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 14976 | 15048 | 14976 | ID=MS.gene91337.t1.exon7;Parent=MS.gene91337.t1 |
| 11162 | CDS | 14976 | 15048 | 14976 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 14794 | 14889 | 14794 | ID=MS.gene91337.t1.exon8;Parent=MS.gene91337.t1 |
| 11162 | CDS | 14794 | 14889 | 14794 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 14607 | 14675 | 14607 | ID=MS.gene91337.t1.exon9;Parent=MS.gene91337.t1 |
| 11162 | CDS | 14607 | 14675 | 14607 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 14413 | 14490 | 14413 | ID=MS.gene91337.t1.exon10;Parent=MS.gene91337.t1 |
| 11162 | CDS | 14413 | 14490 | 14413 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 13535 | 13621 | 13535 | ID=MS.gene91337.t1.exon11;Parent=MS.gene91337.t1 |
| 11162 | CDS | 13535 | 13621 | 13535 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 13406 | 13440 | 13406 | ID=MS.gene91337.t1.exon12;Parent=MS.gene91337.t1 |
| 11162 | CDS | 13406 | 13440 | 13406 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 13173 | 13278 | 13173 | ID=MS.gene91337.t1.exon13;Parent=MS.gene91337.t1 |
| 11162 | CDS | 13173 | 13278 | 13173 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 12499 | 12579 | 12499 | ID=MS.gene91337.t1.exon14;Parent=MS.gene91337.t1 |
| 11162 | CDS | 12499 | 12579 | 12499 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 12318 | 12410 | 12318 | ID=MS.gene91337.t1.exon15;Parent=MS.gene91337.t1 |
| 11162 | CDS | 12318 | 12410 | 12318 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 11964 | 12017 | 11964 | ID=MS.gene91337.t1.exon16;Parent=MS.gene91337.t1 |
| 11162 | CDS | 11964 | 12017 | 11964 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 11752 | 11868 | 11752 | ID=MS.gene91337.t1.exon17;Parent=MS.gene91337.t1 |
| 11162 | CDS | 11752 | 11868 | 11752 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 11480 | 11578 | 11480 | ID=MS.gene91337.t1.exon18;Parent=MS.gene91337.t1 |
| 11162 | CDS | 11480 | 11578 | 11480 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 10962 | 11009 | 10962 | ID=MS.gene91337.t1.exon19;Parent=MS.gene91337.t1 |
| 11162 | CDS | 10962 | 11009 | 10962 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 10797 | 10889 | 10797 | ID=MS.gene91337.t1.exon20;Parent=MS.gene91337.t1 |
| 11162 | CDS | 10797 | 10889 | 10797 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 8352 | 8459 | 8352 | ID=MS.gene91337.t1.exon21;Parent=MS.gene91337.t1 |
| 11162 | CDS | 8352 | 8459 | 8352 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 8197 | 8261 | 8197 | ID=MS.gene91337.t1.exon22;Parent=MS.gene91337.t1 |
| 11162 | CDS | 8197 | 8261 | 8197 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 7916 | 8018 | 7916 | ID=MS.gene91337.t1.exon23;Parent=MS.gene91337.t1 |
| 11162 | CDS | 7916 | 8018 | 7916 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 6905 | 7171 | 6905 | ID=MS.gene91337.t1.exon24;Parent=MS.gene91337.t1 |
| 11162 | CDS | 6905 | 7171 | 6905 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| 11162 | exon | 6651 | 6782 | 6651 | ID=MS.gene91337.t1.exon25;Parent=MS.gene91337.t1 |
| 11162 | CDS | 6651 | 6782 | 6651 | ID=cds.MS.gene91337.t1;Parent=MS.gene91337.t1 |
| Gene Sequence |
| Protein sequence |
