AlfalfaGEDB | MS.gene92755

M. sativa cultivar XinJiangDaYe / MS.gene92755

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03106.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92755.t1	XP_003623634.1	91.5	294	14	2	1	283	1	294	6.90E-152	546.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92755.t1	K4BIZ9	40.3	181	94	4	14	189	12	183	1.3e-29	131.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92755.t1	G7KY64	91.5	294	14	2	1	283	1	294	4.9e-152	546.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene92755.t1	TF	WRKY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049958	MS.gene92755	0.819753	9.84E-53	-1.69E-46
MS.gene050780	MS.gene92755	0.844225	8.62E-59	-1.69E-46
MS.gene051207	MS.gene92755	0.808345	3.24E-50	-1.69E-46
MS.gene051494	MS.gene92755	0.844023	9.77E-59	-1.69E-46
MS.gene051544	MS.gene92755	0.820799	5.67E-53	-1.69E-46
MS.gene051568	MS.gene92755	0.804156	2.47E-49	-1.69E-46
MS.gene052297	MS.gene92755	0.81894	1.51E-52	-1.69E-46
MS.gene052637	MS.gene92755	0.805523	1.28E-49	-1.69E-46
MS.gene053147	MS.gene92755	0.830929	2.23E-55	-1.69E-46
MS.gene053641	MS.gene92755	0.848812	4.83E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92755.t1	MTR_7g073380	91.497	294	14	2	1	283	1	294	0.0	551
MS.gene92755.t1	MTR_7g073430	88.070	285	30	4	1	283	1	283	0.0	509
MS.gene92755.t1	MTR_0002s1250	40.840	262	130	6	13	264	5	251	3.13e-61	195
MS.gene92755.t1	MTR_8g005750	48.077	208	94	5	14	220	4	198	8.50e-58	186
MS.gene92755.t1	MTR_8g032510	46.009	213	105	5	14	220	7	215	1.78e-56	183
MS.gene92755.t1	MTR_2g075690	40.079	252	117	8	11	231	12	260	1.14e-49	166
MS.gene92755.t1	MTR_2g075700	41.564	243	114	5	17	231	17	259	2.30e-45	155
MS.gene92755.t1	MTR_2g075680	38.224	259	122	6	11	233	12	268	1.10e-42	148
MS.gene92755.t1	MTR_5g067700	39.407	236	108	12	5	238	4	206	1.63e-39	138
MS.gene92755.t1	MTR_3g093830	41.530	183	86	6	21	191	23	196	3.15e-38	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92755.t1	AT3G56400	41.758	182	81	5	14	182	10	179	1.82e-37	134
MS.gene92755.t1	AT2G40750	37.500	200	92	8	14	182	14	211	3.77e-28	111
MS.gene92755.t1	AT1G66550	35.644	202	109	8	14	212	8	191	1.46e-27	107
MS.gene92755.t1	AT2G46400	34.783	184	90	5	15	189	8	170	1.24e-26	105
MS.gene92755.t1	AT5G01900	34.921	189	95	5	10	187	3	174	3.46e-26	103
MS.gene92755.t1	AT1G66550	33.831	201	109	7	14	212	8	186	7.33e-26	102
MS.gene92755.t1	AT5G22570	32.432	185	103	5	14	191	9	178	4.75e-24	99.0
MS.gene92755.t1	AT4G11070	31.959	194	108	4	12	182	8	200	5.99e-23	96.3
MS.gene92755.t1	AT1G66560	34.302	172	97	5	15	185	9	165	8.85e-23	94.7
MS.gene92755.t1	AT1G66600	34.091	176	94	5	14	185	8	165	4.83e-22	92.4

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Find 57 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGAGCCCTCAGAAGT+AGG	0.544337	7.4:-31133648	None:intergenic
AACAATAATCCTACTTCTGA+GGG	0.511593	7.4:+31133639	MS.gene92755:CDS
AACATGGAAGACTGGTCACA+AGG	0.611016	7.4:-31135295	None:intergenic
AATGGACAGTCTTGTTTGGC+TGG	0.477532	7.4:-31135346	None:intergenic
ACAAGTGCAACAAATTCAAG+AGG	0.601952	7.4:+31135192	MS.gene92755:CDS
ACAAGTGTGATGGCCATAGT+AGG	0.510474	7.4:-31135236	None:intergenic
ACATCATCATACATGATATC+AGG	0.372411	7.4:-31135520	None:intergenic
AGAAATATTCTGAATGAAAG+TGG	0.485810	7.4:+31133522	MS.gene92755:CDS
AGCTAAGGAACATGGAAGAC+TGG	0.529377	7.4:-31135303	None:intergenic
AGGTAATCATTTGAAGGAGG+AGG	0.457187	7.4:-31135412	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATAATCCTACTTCTGA+GGG	+	chr7.4:31133639-31133658	MS.gene92755:CDS	30.0%
AATTGATAGGGTCCAATATT+AGG	-	chr7.4:31134369-31134388	None:intergenic	30.0%
ACATCATCATACATGATATC+AGG	-	chr7.4:31135523-31135542	None:intergenic	30.0%
ATTGATAGGGTCCAATATTA+GGG	-	chr7.4:31134368-31134387	None:intergenic	30.0%
CAGAAAAGTTTCACAAACAT+GGG	+	chr7.4:31134642-31134661	MS.gene92755:intron	30.0%
CTTTACAAAACAACCTACTA+TGG	+	chr7.4:31135223-31135242	MS.gene92755:CDS	30.0%
CTTTCCGAAGAAGAAAAAAA+AGG	-	chr7.4:31133990-31134009	None:intergenic	30.0%
TAGTGTGTATGAAAAACCAT+AGG	-	chr7.4:31133853-31133872	None:intergenic	30.0%
TCAGAAAAGTTTCACAAACA+TGG	+	chr7.4:31134641-31134660	MS.gene92755:intron	30.0%
TTTAAAAGATCTTCAGCAAC+TGG	-	chr7.4:31133579-31133598	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	31133435	31135564	31133435	ID=MS.gene92755
chr7.4	mRNA	31133435	31135564	31133435	ID=MS.gene92755.t1;Parent=MS.gene92755
chr7.4	exon	31133435	31133757	31133435	ID=MS.gene92755.t1.exon1;Parent=MS.gene92755.t1
chr7.4	CDS	31133435	31133757	31133435	ID=cds.MS.gene92755.t1;Parent=MS.gene92755.t1
chr7.4	exon	31134645	31134749	31134645	ID=MS.gene92755.t1.exon2;Parent=MS.gene92755.t1
chr7.4	CDS	31134645	31134749	31134645	ID=cds.MS.gene92755.t1;Parent=MS.gene92755.t1
chr7.4	exon	31135141	31135564	31135141	ID=MS.gene92755.t1.exon3;Parent=MS.gene92755.t1
chr7.4	CDS	31135141	31135564	31135141	ID=cds.MS.gene92755.t1;Parent=MS.gene92755.t1

Gene Sequence

>MS.gene92755

ATGAAAAATGAAAATCTAGCTCATGGTAGTGGTCGTGGAAAAGTGATTGATGAATTGTTAAAAGGGCGTGAACTTGCAAACAAACTTAGAAATATTCTGAATGAAAGTGGTGATATTGATAACATTAATGGATCAACAACACCAGTTGCTGAAGATCTTTTAAAGGAAGTGCTTACAACTTTTACTAATTCCCTATTGTTCTTGAACAATAATCCTACTTCTGAGGGCTCTGATTTGCAACTCACCAAATCTGAGGATTCTTTAGAGAGTAATTGCAAGAGTACTTCCATTGTTAAGGAACGTAGAGGCTGTTACAAAAGAAGGTATTTTTTTTTTTACTAATTACTAATTTTGCTTCCACATATTCAACTCTTTTTACTATATGAGATCTATATAAATAGTTGACCTATTTTAACCTATGGTTTTTCATACACACTATTCATGGATCTCTCCCAACACATCTATAATTCTATATCCACTTTTCATACATCTAAAATTTTTATATGATTTTTTTTATTCATACATGCATAGTTTTATATATATAGTGTTTTTCCTTTTTTTTCTTCTTCGGAAAGTATTTTATTTTAGCTGATTTTTTAATTTTATTTTTCTTCTCTTATTTTTCTTCTCTTATTTCTTGACTTATATAATTTCAATTTTATTTGAACTTTTAAGATGAGGTAATGTATAGTTTGTTCTTTAGTATGATTAGCGATTATAATTGCTAATTAATGTCCTTTACAACATATGAGTAATATTGGGGTGGGGCTTCCGTGACTTTGGCTTCGGTGCCTTTGTCTCTATCTCTCTCCTAACCAATAATTTTCTCTTATCAAAATAATTTATTTTAATCATTCAATCATCACTCTCTTTCCTCTAAAATACACTAAAGTCACCAAAGTCACCCAACACAAAGTCACTAAAGCCCCACCCTAATATTGGACCCTATCAATTATTGTTCATCATCATTGTCATCATATCCACTACATGTGATGAAAGGACTATGTTGCAATTATCCCTCTCATTTTTATTTATTTTGTTGTGTTTTTTTTTTTTGTGGTGCTTTATTTATTTTGTTGTTTCCTCTAGTTATTATGGTTTTGGCTGACACAGTAAAATTATTTGATTGTTTCATAGTCTTACATTGATTGGTTTTGAGTTTTTTTTGGTAAACTTATAAAACTTACCCAATTATGCAATTCTTTTTCAGAAAAGTTTCACAAACATGGGAGAAGGAGTCTGATCGTCCCGTGGAAGATGGTCATCAATGGAGAAAGTATGGCCAAAAAAAGATCTTGCACACCGATTTCCCAAGGTATATTTATACGAGTTTAATTAAGTACAAACCCATTTTACTTTTAAGATTGTCATCCAATCCAATCAAATTTCACTATTTGAACACATTATCATGTTAACTGATTTTTAAATTAATTAATTTAATTACTACGATGTCGAGATTTGATTTAATAATTAATTAGTAAAATGATTTATAATATCAATGTATATATAATTTAATTTCTTTACATCTTAAAGGATTGAGTCGATCAACTGATTTGAATAAAATGTTAAATGAGTTGAAGGAGTATCTTAGTTCAAATTTTAAAACTTATATTTAGTTTTACACAAAAAAAAATTCCTCTAATTCTTCTTTCTTAATATCTCTTCTATATGCTAAGAAGCTAAATGAATATTTATATTCTTTGCAGGAACTATTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTGCAACAAATTCAAGAGGAACCACCTCTTTACAAAACAACCTACTATGGCCATCACACTTGTAGAATCTTGCAAAGCCCTGAGATCATAGAGGATTCTCCTTGTGACCAGTCTTCCATGTTCCTTAGCTTTGACAACTCTTTCCCAACACCAGCCAAACAAGACTGTCCATTTCTCTCAGTGAAAAAGGAGGATTGCAAGGAAGAGATTGTTCATCCTCCTCCTTCAAATGATTACCTCTCTGGACTCACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCAGTTAGGTGTCAACATTCCTGATATCATGTATGATGATGTCCTTAATTGGCCACTTTCTTGA

Protein sequence

>MS.gene92755.t1

MKNENLAHGSGRGKVIDELLKGRELANKLRNILNESGDIDNINGSTTPVAEDLLKEVLTTFTNSLLFLNNNPTSEGSDLQLTKSEDSLESNCKSTSIVKERRGCYKRRKVSQTWEKESDRPVEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQQIQEEPPLYKTTYYGHHTCRILQSPEIIEDSPCDQSSMFLSFDNSFPTPAKQDCPFLSVKKEDCKEEIVHPPPSNDYLSGLTFDDPEKDVTLSSTLDSHDQLGVNIPDIMYDDVLNWPLS