AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92755

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92755.t1 MTR_7g073380 91.497 294 14 2 1 283 1 294 0.0 551
MS.gene92755.t1 MTR_7g073430 88.070 285 30 4 1 283 1 283 0.0 509
MS.gene92755.t1 MTR_0002s1250 40.840 262 130 6 13 264 5 251 3.13e-61 195
MS.gene92755.t1 MTR_8g005750 48.077 208 94 5 14 220 4 198 8.50e-58 186
MS.gene92755.t1 MTR_8g032510 46.009 213 105 5 14 220 7 215 1.78e-56 183
MS.gene92755.t1 MTR_2g075690 40.079 252 117 8 11 231 12 260 1.14e-49 166
MS.gene92755.t1 MTR_2g075700 41.564 243 114 5 17 231 17 259 2.30e-45 155
MS.gene92755.t1 MTR_2g075680 38.224 259 122 6 11 233 12 268 1.10e-42 148
MS.gene92755.t1 MTR_5g067700 39.407 236 108 12 5 238 4 206 1.63e-39 138
MS.gene92755.t1 MTR_3g093830 41.530 183 86 6 21 191 23 196 3.15e-38 137
MS.gene92755.t1 MTR_2g075750 55.446 101 44 1 108 207 13 113 5.04e-35 125
MS.gene92755.t1 MTR_2g075610 54.369 103 46 1 108 209 14 116 6.35e-34 122
MS.gene92755.t1 MTR_7g117200 32.487 197 105 4 12 195 9 190 2.37e-27 108
MS.gene92755.t1 MTR_3g090860 33.503 197 95 5 15 184 7 194 2.07e-26 106
MS.gene92755.t1 MTR_8g027860 51.765 85 33 1 106 182 111 195 3.50e-23 97.4
MS.gene92755.t1 MTR_8g099350 31.863 204 104 7 1 182 1 191 4.38e-21 92.0
MS.gene92755.t1 MTR_5g067680 38.889 108 61 1 75 182 159 261 5.95e-18 83.2
MS.gene92755.t1 MTR_5g073620 46.875 64 34 0 121 184 670 733 1.85e-14 73.9
MS.gene92755.t1 MTR_7g028415 51.667 60 26 1 122 181 92 148 1.92e-14 70.1
MS.gene92755.t1 MTR_7g028710 51.667 60 26 1 122 181 92 148 1.92e-14 70.1
MS.gene92755.t1 MTR_8g092140 40.964 83 39 3 98 180 142 214 3.18e-13 68.2
MS.gene92755.t1 MTR_8g096730 35.088 114 68 3 76 189 26 133 4.28e-13 65.9
MS.gene92755.t1 MTR_7g110720 35.345 116 72 2 66 180 158 271 1.78e-12 67.4
MS.gene92755.t1 MTR_3g095080 41.176 85 37 3 98 181 151 223 2.36e-12 65.9
MS.gene92755.t1 MTR_7g079010 43.077 65 34 1 116 180 134 195 3.99e-12 64.7
MS.gene92755.t1 MTR_1g086790 46.667 60 29 1 122 181 157 213 4.30e-12 65.9
MS.gene92755.t1 MTR_3g095080 41.176 85 37 3 98 181 127 199 4.50e-12 64.7
MS.gene92755.t1 MTR_5g043880 47.458 59 28 1 122 180 123 178 5.01e-12 65.1
MS.gene92755.t1 MTR_2g088000 34.579 107 67 2 98 204 325 428 5.49e-12 66.2
MS.gene92755.t1 MTR_8g007270 33.813 139 62 6 73 205 113 227 5.61e-12 64.3
MS.gene92755.t1 MTR_7g109800 46.667 60 29 1 122 181 144 200 1.25e-11 64.3
MS.gene92755.t1 MTR_3g053330 36.364 99 60 2 106 204 235 330 1.79e-11 64.3
MS.gene92755.t1 MTR_4g094588 47.458 59 28 1 122 180 177 232 3.71e-11 63.2
MS.gene92755.t1 MTR_5g091390 45.763 59 29 1 122 180 156 211 3.93e-11 62.8
MS.gene92755.t1 MTR_8g028565 39.744 78 43 2 106 181 136 211 5.15e-11 62.8
MS.gene92755.t1 MTR_4g122530 37.838 74 42 2 108 180 192 262 9.48e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92755.t1 AT3G56400 41.758 182 81 5 14 182 10 179 1.82e-37 134
MS.gene92755.t1 AT2G40750 37.500 200 92 8 14 182 14 211 3.77e-28 111
MS.gene92755.t1 AT1G66550 35.644 202 109 8 14 212 8 191 1.46e-27 107
MS.gene92755.t1 AT2G46400 34.783 184 90 5 15 189 8 170 1.24e-26 105
MS.gene92755.t1 AT5G01900 34.921 189 95 5 10 187 3 174 3.46e-26 103
MS.gene92755.t1 AT1G66550 33.831 201 109 7 14 212 8 186 7.33e-26 102
MS.gene92755.t1 AT5G22570 32.432 185 103 5 14 191 9 178 4.75e-24 99.0
MS.gene92755.t1 AT4G11070 31.959 194 108 4 12 182 8 200 5.99e-23 96.3
MS.gene92755.t1 AT1G66560 34.302 172 97 5 15 185 9 165 8.85e-23 94.7
MS.gene92755.t1 AT1G66600 34.091 176 94 5 14 185 8 165 4.83e-22 92.4
MS.gene92755.t1 AT2G40740 30.732 205 114 5 16 195 44 245 1.16e-20 89.7
MS.gene92755.t1 AT2G40740 30.732 205 114 5 16 195 53 254 1.38e-20 89.7
MS.gene92755.t1 AT5G24110 32.948 173 90 3 24 182 12 172 6.54e-20 87.8
MS.gene92755.t1 AT4G11070 32.948 173 102 3 12 182 8 168 2.76e-19 85.9
MS.gene92755.t1 AT1G80590 27.823 248 129 8 13 253 7 211 1.16e-18 83.2
MS.gene92755.t1 AT4G23810 45.882 85 38 1 106 182 133 217 1.34e-17 81.6
MS.gene92755.t1 AT1G69310 37.097 124 71 4 69 188 89 209 1.42e-14 72.8
MS.gene92755.t1 AT1G69310 37.097 124 71 4 69 188 89 209 1.42e-14 72.8
MS.gene92755.t1 AT1G69310 37.097 124 71 4 69 188 89 209 1.42e-14 72.8
MS.gene92755.t1 AT5G45260 52.632 57 27 0 124 180 1209 1265 2.09e-13 70.9
MS.gene92755.t1 AT5G41570 40.964 83 44 2 98 180 75 152 1.34e-12 65.1
MS.gene92755.t1 AT5G13080 45.070 71 36 1 122 192 66 133 1.40e-12 64.3
MS.gene92755.t1 AT2G37260 45.833 72 35 2 117 188 344 411 1.85e-12 67.4
MS.gene92755.t1 AT2G37260 45.833 72 35 2 117 188 262 329 2.46e-12 66.6
MS.gene92755.t1 AT2G37260 45.833 72 35 2 117 188 264 331 2.49e-12 66.6
MS.gene92755.t1 AT5G49520 41.791 67 36 1 122 188 220 283 3.94e-12 66.2
MS.gene92755.t1 AT2G46130 45.763 59 29 1 122 180 29 84 4.61e-12 62.0
MS.gene92755.t1 AT1G64000 43.077 65 34 1 116 180 107 168 5.90e-12 63.9
MS.gene92755.t1 AT3G01970 38.202 89 44 2 122 210 64 141 7.86e-12 62.4
MS.gene92755.t1 AT4G04450 33.929 112 71 2 94 204 168 277 1.66e-11 64.7
MS.gene92755.t1 AT2G47260 46.667 60 29 1 122 181 173 229 1.99e-11 63.9
MS.gene92755.t1 AT4G39410 38.542 96 44 4 93 188 201 281 2.32e-11 63.5
MS.gene92755.t1 AT4G04450 33.929 112 71 2 94 204 262 371 2.56e-11 64.3
MS.gene92755.t1 AT2G44745 41.667 84 42 3 98 180 122 199 2.81e-11 62.4
MS.gene92755.t1 AT4G18170 36.538 104 54 4 80 180 132 226 3.13e-11 63.2
MS.gene92755.t1 AT1G62300 44.595 74 38 2 108 180 296 367 4.55e-11 63.5
MS.gene92755.t1 AT1G29860 44.444 63 32 1 122 184 135 194 5.27e-11 62.4

Find 57 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATTGATGAATTGTTAAA+AGG 0.184934 7.4:+31133477 MS.gene92755:CDS
TTCAAGAAAGTGGCCAATTA+AGG 0.251647 7.4:-31135543 None:intergenic
GGTGATATTGATAACATTAA+TGG 0.251913 7.4:+31133543 MS.gene92755:CDS
TTCTTTGCAGGAACTATTAC+AGG 0.255514 7.4:+31135131 MS.gene92755:intron
TCCATTTCTCTCAGTGAAAA+AGG 0.266907 7.4:+31135363 MS.gene92755:CDS
GATTATTGTTCAAGAACAAT+AGG 0.331883 7.4:-31133626 None:intergenic
CAAGAGTACTTCCATTGTTA+AGG 0.344618 7.4:+31133710 MS.gene92755:CDS
CTTTACAAAACAACCTACTA+TGG 0.350539 7.4:+31135223 MS.gene92755:CDS
TGTATGATGATGTCCTTAAT+TGG 0.353206 7.4:+31135530 MS.gene92755:CDS
ACATCATCATACATGATATC+AGG 0.372411 7.4:-31135520 None:intergenic
TTTAAAAGATCTTCAGCAAC+TGG 0.373083 7.4:-31133576 None:intergenic
ATAAATATACCTTGGGAAAT+CGG 0.385972 7.4:-31134737 None:intergenic
CTCTAAAGAATCCTCAGATT+TGG 0.392364 7.4:-31133679 None:intergenic
TCTAATTAATTTCAAGAAAG+TGG 0.395509 7.4:-31135553 None:intergenic
GGTCATCAATGGAGAAAGTA+TGG 0.401550 7.4:+31134694 MS.gene92755:CDS
CTTGATTCTCATGATCAGTT+AGG 0.404590 7.4:+31135487 MS.gene92755:CDS
GGAGAATCCTCTATGATCTC+AGG 0.407384 7.4:-31135274 None:intergenic
CAGTCTTGTTTGGCTGGTGT+TGG 0.412342 7.4:-31135340 None:intergenic
ATTATTGTTCAAGAACAATA+GGG 0.414455 7.4:-31133625 None:intergenic
CCTTCAAATGATTACCTCTC+TGG 0.419974 7.4:+31135418 MS.gene92755:CDS
GAGAAATGGACAGTCTTGTT+TGG 0.445787 7.4:-31135350 None:intergenic
AGTCTTGTTTGGCTGGTGTT+GGG 0.452762 7.4:-31135339 None:intergenic
AGGTAATCATTTGAAGGAGG+AGG 0.457187 7.4:-31135412 None:intergenic
CCAGAGAGGTAATCATTTGA+AGG 0.470477 7.4:-31135418 None:intergenic
TGATTGATGAATTGTTAAAA+GGG 0.474553 7.4:+31133478 MS.gene92755:CDS
CAGAAAAGTTTCACAAACAT+GGG 0.477292 7.4:+31134642 MS.gene92755:intron
AATGGACAGTCTTGTTTGGC+TGG 0.477532 7.4:-31135346 None:intergenic
AGAAATATTCTGAATGAAAG+TGG 0.485810 7.4:+31133522 MS.gene92755:CDS
TCAGAAAAGTTTCACAAACA+TGG 0.494934 7.4:+31134641 MS.gene92755:intron
CTAGCTCATGGTAGTGGTCG+TGG 0.509082 7.4:+31133450 MS.gene92755:CDS
ACAAGTGTGATGGCCATAGT+AGG 0.510474 7.4:-31135236 None:intergenic
AACAATAATCCTACTTCTGA+GGG 0.511593 7.4:+31133639 MS.gene92755:CDS
TCTGATCGTCCCGTGGAAGA+TGG 0.520055 7.4:+31134673 MS.gene92755:CDS
GAAAATCTAGCTCATGGTAG+TGG 0.526481 7.4:+31133444 MS.gene92755:CDS
CCGTGGAAGATGGTCATCAA+TGG 0.528577 7.4:+31134683 MS.gene92755:CDS
AGCTAAGGAACATGGAAGAC+TGG 0.529377 7.4:-31135303 None:intergenic
GTAGAGGCTGTTACAAAAGA+AGG 0.531049 7.4:+31133736 MS.gene92755:CDS
GTTGTCAAAGCTAAGGAACA+TGG 0.540400 7.4:-31135311 None:intergenic
AAATCAGAGCCCTCAGAAGT+AGG 0.544337 7.4:-31133648 None:intergenic
GAACAATAATCCTACTTCTG+AGG 0.546015 7.4:+31133638 MS.gene92755:CDS
GGAAAGAGTTGTCAAAGCTA+AGG 0.561012 7.4:-31135318 None:intergenic
TGCACTCACAAACATGATCA+AGG 0.563442 7.4:+31135154 MS.gene92755:CDS
GAGAATCCTCTATGATCTCA+GGG 0.568526 7.4:-31135273 None:intergenic
CCATTGATGACCATCTTCCA+CGG 0.575191 7.4:-31134683 None:intergenic
GCAAGATTCTACAAGTGTGA+TGG 0.576779 7.4:-31135246 None:intergenic
GCCTCTACGTTCCTTAACAA+TGG 0.594370 7.4:-31133721 None:intergenic
AGTTTCACAAACATGGGAGA+AGG 0.598123 7.4:+31134648 MS.gene92755:CDS
ACAAGTGCAACAAATTCAAG+AGG 0.601952 7.4:+31135192 MS.gene92755:CDS
AACATGGAAGACTGGTCACA+AGG 0.611016 7.4:-31135295 None:intergenic
CATTGATGACCATCTTCCAC+GGG 0.612085 7.4:-31134682 None:intergenic
TTTGCAACTCACCAAATCTG+AGG 0.616026 7.4:+31133668 MS.gene92755:CDS
GCAAAGCCCTGAGATCATAG+AGG 0.632964 7.4:+31135267 MS.gene92755:CDS
TCTTGCACACCGATTTCCCA+AGG 0.637507 7.4:+31134728 MS.gene92755:CDS
GAGAGGTAATCATTTGAAGG+AGG 0.645608 7.4:-31135415 None:intergenic
TCCATTGTTAAGGAACGTAG+AGG 0.656442 7.4:+31133720 MS.gene92755:CDS
GAAGGAGTCTGATCGTCCCG+TGG 0.657169 7.4:+31134666 MS.gene92755:CDS
CATCAAAAGTGAGTCCAGAG+AGG 0.707648 7.4:-31135432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATAAATAAAAATGAG+AGG - chr7.4:31134455-31134474 None:intergenic 15.0%
!! CAAAATAAATAAAAATGAGA+GGG - chr7.4:31134454-31134473 None:intergenic 15.0%
!! TTAATTTCTTTACATCTTAA+AGG + chr7.4:31134946-31134965 MS.gene92755:intron 15.0%
!!! TTTTGATAAGAGAAAATTAT+TGG - chr7.4:31134253-31134272 None:intergenic 15.0%
!! ATATAGAATTATAGATGTGT+TGG - chr7.4:31133890-31133909 None:intergenic 20.0%
!! ATATTACTCATATGTTGTAA+AGG - chr7.4:31134173-31134192 None:intergenic 20.0%
!! ATGATGAACAATAATTGATA+GGG - chr7.4:31134381-31134400 None:intergenic 20.0%
!! ATTATTGTTCAAGAACAATA+GGG - chr7.4:31133628-31133647 None:intergenic 20.0%
!! GACAATCTTAAAAGTAAAAT+GGG - chr7.4:31134784-31134803 None:intergenic 20.0%
!! TACAACATATGAGTAATATT+GGG + chr7.4:31134174-31134193 MS.gene92755:intron 20.0%
!! TATAGAATTATAGATGTGTT+GGG - chr7.4:31133889-31133908 None:intergenic 20.0%
!! TATTAAGAAAGAAGAATTAG+AGG - chr7.4:31135073-31135092 None:intergenic 20.0%
!! TGAAAAAGAATTGCATAATT+GGG - chr7.4:31134624-31134643 None:intergenic 20.0%
!! TGAATATTTATATTCTTTGC+AGG + chr7.4:31135119-31135138 MS.gene92755:intron 20.0%
!! TGACAATCTTAAAAGTAAAA+TGG - chr7.4:31134785-31134804 None:intergenic 20.0%
!! TGATTGATGAATTGTTAAAA+GGG + chr7.4:31133478-31133497 MS.gene92755:CDS 20.0%
!! TTACAACATATGAGTAATAT+TGG + chr7.4:31134173-31134192 MS.gene92755:intron 20.0%
!! TTCAAATAGTGAAATTTGAT+TGG - chr7.4:31134814-31134833 None:intergenic 20.0%
!!! AATTTTAGATGTATGAAAAG+TGG - chr7.4:31133913-31133932 None:intergenic 20.0%
!!! ATAAGAGAAAATTATTGGTT+AGG - chr7.4:31134248-31134267 None:intergenic 20.0%
!!! TAAAATGTTAAATGAGTTGA+AGG + chr7.4:31134993-31135012 MS.gene92755:intron 20.0%
!!! TGTTGTGTTTTTTTTTTTTG+TGG + chr7.4:31134472-31134491 MS.gene92755:intron 20.0%
!!! TTATTTGAACTTTTAAGATG+AGG + chr7.4:31134093-31134112 MS.gene92755:intron 20.0%
!!! TTTTCCTTTTTTTTCTTCTT+CGG + chr7.4:31133983-31134002 MS.gene92755:intron 20.0%
! AAACTCGTATAAATATACCT+TGG - chr7.4:31134748-31134767 None:intergenic 25.0%
! AACTCGTATAAATATACCTT+GGG - chr7.4:31134747-31134766 None:intergenic 25.0%
! ACAACATATGAGTAATATTG+GGG + chr7.4:31134175-31134194 MS.gene92755:intron 25.0%
! AGAAATATTCTGAATGAAAG+TGG + chr7.4:31133522-31133541 MS.gene92755:CDS 25.0%
! AGTAAAAAGAGTTGAATATG+TGG - chr7.4:31133795-31133814 None:intergenic 25.0%
! ATAAATATACCTTGGGAAAT+CGG - chr7.4:31134740-31134759 None:intergenic 25.0%
! ATAGTGAAATTTGATTGGAT+TGG - chr7.4:31134809-31134828 None:intergenic 25.0%
! CTGAAAAAGAATTGCATAAT+TGG - chr7.4:31134625-31134644 None:intergenic 25.0%
! GAAAAACCATAGGTTAAAAT+AGG - chr7.4:31133843-31133862 None:intergenic 25.0%
! GATGATGAACAATAATTGAT+AGG - chr7.4:31134382-31134401 None:intergenic 25.0%
! GATTATTGTTCAAGAACAAT+AGG - chr7.4:31133629-31133648 None:intergenic 25.0%
! GTGATTGATGAATTGTTAAA+AGG + chr7.4:31133477-31133496 MS.gene92755:CDS 25.0%
!! AAAAATGAAAATCTAGCTCA+TGG + chr7.4:31133438-31133457 MS.gene92755:CDS 25.0%
!! GGTGATATTGATAACATTAA+TGG + chr7.4:31133543-31133562 MS.gene92755:CDS 25.0%
!! TTTCATAGTCTTACATTGAT+TGG + chr7.4:31134564-31134583 MS.gene92755:intron 25.0%
!! TTTTTCATACACACTATTCA+TGG + chr7.4:31133857-31133876 MS.gene92755:intron 25.0%
!!! GATTGGTTTTGAGTTTTTTT+TGG + chr7.4:31134581-31134600 MS.gene92755:intron 25.0%
AACAATAATCCTACTTCTGA+GGG + chr7.4:31133639-31133658 MS.gene92755:CDS 30.0%
AATTGATAGGGTCCAATATT+AGG - chr7.4:31134369-31134388 None:intergenic 30.0%
ACATCATCATACATGATATC+AGG - chr7.4:31135523-31135542 None:intergenic 30.0%
ATTGATAGGGTCCAATATTA+GGG - chr7.4:31134368-31134387 None:intergenic 30.0%
CAGAAAAGTTTCACAAACAT+GGG + chr7.4:31134642-31134661 MS.gene92755:intron 30.0%
CTTTACAAAACAACCTACTA+TGG + chr7.4:31135223-31135242 MS.gene92755:CDS 30.0%
CTTTCCGAAGAAGAAAAAAA+AGG - chr7.4:31133990-31134009 None:intergenic 30.0%
TAGTGTGTATGAAAAACCAT+AGG - chr7.4:31133853-31133872 None:intergenic 30.0%
TCAGAAAAGTTTCACAAACA+TGG + chr7.4:31134641-31134660 MS.gene92755:intron 30.0%
TTTAAAAGATCTTCAGCAAC+TGG - chr7.4:31133579-31133598 None:intergenic 30.0%
! AGTTGCTGAAGATCTTTTAA+AGG + chr7.4:31133578-31133597 MS.gene92755:CDS 30.0%
! GTTGTTTCCTCTAGTTATTA+TGG + chr7.4:31134510-31134529 MS.gene92755:intron 30.0%
! TCCTCTAGTTATTATGGTTT+TGG + chr7.4:31134516-31134535 MS.gene92755:intron 30.0%
! TGTATGATGATGTCCTTAAT+TGG + chr7.4:31135530-31135549 MS.gene92755:CDS 30.0%
!! GTGACTTTAGTGTATTTTAG+AGG - chr7.4:31134311-31134330 None:intergenic 30.0%
!! TAGTAGGTTGTTTTGTAAAG+AGG - chr7.4:31135223-31135242 None:intergenic 30.0%
!!! AGTTGACCTATTTTAACCTA+TGG + chr7.4:31133834-31133853 MS.gene92755:intron 30.0%
ACAAGTGCAACAAATTCAAG+AGG + chr7.4:31135192-31135211 MS.gene92755:CDS 35.0%
ACATATGAGTAATATTGGGG+TGG + chr7.4:31134178-31134197 MS.gene92755:intron 35.0%
ATATGAGTAATATTGGGGTG+GGG + chr7.4:31134180-31134199 MS.gene92755:intron 35.0%
ATTTCTCTCAGTGAAAAAGG+AGG + chr7.4:31135366-31135385 MS.gene92755:CDS 35.0%
CATATGAGTAATATTGGGGT+GGG + chr7.4:31134179-31134198 MS.gene92755:intron 35.0%
CTTGATTCTCATGATCAGTT+AGG + chr7.4:31135487-31135506 MS.gene92755:CDS 35.0%
GAACAATAATCCTACTTCTG+AGG + chr7.4:31133638-31133657 MS.gene92755:CDS 35.0%
GCCAAAACCATAATAACTAG+AGG - chr7.4:31134520-31134539 None:intergenic 35.0%
TATCCACTACATGTGATGAA+AGG + chr7.4:31134412-31134431 MS.gene92755:intron 35.0%
TCCATTTCTCTCAGTGAAAA+AGG + chr7.4:31135363-31135382 MS.gene92755:CDS 35.0%
TTCTTTGCAGGAACTATTAC+AGG + chr7.4:31135131-31135150 MS.gene92755:intron 35.0%
! CTCTAAAGAATCCTCAGATT+TGG - chr7.4:31133682-31133701 None:intergenic 35.0%
!! CAAGAGTACTTCCATTGTTA+AGG + chr7.4:31133710-31133729 MS.gene92755:CDS 35.0%
!! CACTTTTGATGATCCAGAAA+AGG + chr7.4:31135444-31135463 MS.gene92755:CDS 35.0%
!! TAGGTTGTTTTGTAAAGAGG+TGG - chr7.4:31135220-31135239 None:intergenic 35.0%
!! TCCTTTTTCACTGAGAGAAA+TGG - chr7.4:31135367-31135386 None:intergenic 35.0%
AGGTAATCATTTGAAGGAGG+AGG - chr7.4:31135415-31135434 None:intergenic 40.0%
AGTCCTTTCATCACATGTAG+TGG - chr7.4:31134418-31134437 None:intergenic 40.0%
AGTGAAAAAGGAGGATTGCA+AGG + chr7.4:31135375-31135394 MS.gene92755:CDS 40.0%
AGTTTCACAAACATGGGAGA+AGG + chr7.4:31134648-31134667 MS.gene92755:CDS 40.0%
ATAGGGTCCAATATTAGGGT+GGG - chr7.4:31134364-31134383 None:intergenic 40.0%
CCAGAGAGGTAATCATTTGA+AGG - chr7.4:31135421-31135440 None:intergenic 40.0%
CCTTCAAATGATTACCTCTC+TGG + chr7.4:31135418-31135437 MS.gene92755:CDS 40.0%
GAGAATCCTCTATGATCTCA+GGG - chr7.4:31135276-31135295 None:intergenic 40.0%
GAGAGGTAATCATTTGAAGG+AGG - chr7.4:31135418-31135437 None:intergenic 40.0%
GCAAGATTCTACAAGTGTGA+TGG - chr7.4:31135249-31135268 None:intergenic 40.0%
GGAAAGAGTTGTCAAAGCTA+AGG - chr7.4:31135321-31135340 None:intergenic 40.0%
GGTCATCAATGGAGAAAGTA+TGG + chr7.4:31134694-31134713 MS.gene92755:CDS 40.0%
GTAGAGGCTGTTACAAAAGA+AGG + chr7.4:31133736-31133755 MS.gene92755:CDS 40.0%
GTTGTCAAAGCTAAGGAACA+TGG - chr7.4:31135314-31135333 None:intergenic 40.0%
TAGGAGAGAGATAGAGACAA+AGG - chr7.4:31134229-31134248 None:intergenic 40.0%
TCCATTGTTAAGGAACGTAG+AGG + chr7.4:31133720-31133739 MS.gene92755:CDS 40.0%
TGCACTCACAAACATGATCA+AGG + chr7.4:31135154-31135173 MS.gene92755:CDS 40.0%
TTTGCAACTCACCAAATCTG+AGG + chr7.4:31133668-31133687 MS.gene92755:CDS 40.0%
! GAAAATCTAGCTCATGGTAG+TGG + chr7.4:31133444-31133463 MS.gene92755:CDS 40.0%
! GATAGTGTGACATCCTTTTC+TGG - chr7.4:31135460-31135479 None:intergenic 40.0%
! GGCTTTAGTGACTTTGTGTT+GGG - chr7.4:31134342-31134361 None:intergenic 40.0%
!! GAGAAATGGACAGTCTTGTT+TGG - chr7.4:31135353-31135372 None:intergenic 40.0%
!!! CGGTGTGCAAGATCTTTTTT+TGG - chr7.4:31134720-31134739 None:intergenic 40.0%
AAATCAGAGCCCTCAGAAGT+AGG - chr7.4:31133651-31133670 None:intergenic 45.0%
ACAAGTGTGATGGCCATAGT+AGG - chr7.4:31135239-31135258 None:intergenic 45.0%
AGCTAAGGAACATGGAAGAC+TGG - chr7.4:31135306-31135325 None:intergenic 45.0%
CATCAAAAGTGAGTCCAGAG+AGG - chr7.4:31135435-31135454 None:intergenic 45.0%
CTAAAGCCCCACCCTAATAT+TGG + chr7.4:31134354-31134373 MS.gene92755:intron 45.0%
GACTTTGTGTTGGGTGACTT+TGG - chr7.4:31134333-31134352 None:intergenic 45.0%
GATAGGGTCCAATATTAGGG+TGG - chr7.4:31134365-31134384 None:intergenic 45.0%
GCCTCTACGTTCCTTAACAA+TGG - chr7.4:31133724-31133743 None:intergenic 45.0%
GGAGAATCCTCTATGATCTC+AGG - chr7.4:31135277-31135296 None:intergenic 45.0%
TAGGGTCCAATATTAGGGTG+GGG - chr7.4:31134363-31134382 None:intergenic 45.0%
! AACATGGAAGACTGGTCACA+AGG - chr7.4:31135298-31135317 None:intergenic 45.0%
! CATTGATGACCATCTTCCAC+GGG - chr7.4:31134685-31134704 None:intergenic 45.0%
! CCATTGATGACCATCTTCCA+CGG - chr7.4:31134686-31134705 None:intergenic 45.0%
! GGGCTTTAGTGACTTTGTGT+TGG - chr7.4:31134343-31134362 None:intergenic 45.0%
!! AATGGACAGTCTTGTTTGGC+TGG - chr7.4:31135349-31135368 None:intergenic 45.0%
!! AGTCTTGTTTGGCTGGTGTT+GGG - chr7.4:31135342-31135361 None:intergenic 45.0%
CCGTGGAAGATGGTCATCAA+TGG + chr7.4:31134683-31134702 MS.gene92755:CDS 50.0%
GCAAAGCCCTGAGATCATAG+AGG + chr7.4:31135267-31135286 MS.gene92755:CDS 50.0%
!! CAGTCTTGTTTGGCTGGTGT+TGG - chr7.4:31135343-31135362 None:intergenic 50.0%
!! TCTTGCACACCGATTTCCCA+AGG + chr7.4:31134728-31134747 MS.gene92755:CDS 50.0%
TCTGATCGTCCCGTGGAAGA+TGG + chr7.4:31134673-31134692 MS.gene92755:CDS 55.0%
! GGCTTCCGTGACTTTGGCTT+CGG + chr7.4:31134201-31134220 MS.gene92755:intron 55.0%
!! AGGCACCGAAGCCAAAGTCA+CGG - chr7.4:31134209-31134228 None:intergenic 55.0%
!! CTAGCTCATGGTAGTGGTCG+TGG + chr7.4:31133450-31133469 MS.gene92755:CDS 55.0%
GAAGGAGTCTGATCGTCCCG+TGG + chr7.4:31134666-31134685 MS.gene92755:CDS 60.0%
GGGTGGGGCTTCCGTGACTT+TGG + chr7.4:31134195-31134214 MS.gene92755:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 31133435 31135564 31133435 ID=MS.gene92755
chr7.4 mRNA 31133435 31135564 31133435 ID=MS.gene92755.t1;Parent=MS.gene92755
chr7.4 exon 31133435 31133757 31133435 ID=MS.gene92755.t1.exon1;Parent=MS.gene92755.t1
chr7.4 CDS 31133435 31133757 31133435 ID=cds.MS.gene92755.t1;Parent=MS.gene92755.t1
chr7.4 exon 31134645 31134749 31134645 ID=MS.gene92755.t1.exon2;Parent=MS.gene92755.t1
chr7.4 CDS 31134645 31134749 31134645 ID=cds.MS.gene92755.t1;Parent=MS.gene92755.t1
chr7.4 exon 31135141 31135564 31135141 ID=MS.gene92755.t1.exon3;Parent=MS.gene92755.t1
chr7.4 CDS 31135141 31135564 31135141 ID=cds.MS.gene92755.t1;Parent=MS.gene92755.t1
Gene Sequence

>MS.gene92755

ATGAAAAATGAAAATCTAGCTCATGGTAGTGGTCGTGGAAAAGTGATTGATGAATTGTTAAAAGGGCGTGAACTTGCAAACAAACTTAGAAATATTCTGAATGAAAGTGGTGATATTGATAACATTAATGGATCAACAACACCAGTTGCTGAAGATCTTTTAAAGGAAGTGCTTACAACTTTTACTAATTCCCTATTGTTCTTGAACAATAATCCTACTTCTGAGGGCTCTGATTTGCAACTCACCAAATCTGAGGATTCTTTAGAGAGTAATTGCAAGAGTACTTCCATTGTTAAGGAACGTAGAGGCTGTTACAAAAGAAGGTATTTTTTTTTTTACTAATTACTAATTTTGCTTCCACATATTCAACTCTTTTTACTATATGAGATCTATATAAATAGTTGACCTATTTTAACCTATGGTTTTTCATACACACTATTCATGGATCTCTCCCAACACATCTATAATTCTATATCCACTTTTCATACATCTAAAATTTTTATATGATTTTTTTTATTCATACATGCATAGTTTTATATATATAGTGTTTTTCCTTTTTTTTCTTCTTCGGAAAGTATTTTATTTTAGCTGATTTTTTAATTTTATTTTTCTTCTCTTATTTTTCTTCTCTTATTTCTTGACTTATATAATTTCAATTTTATTTGAACTTTTAAGATGAGGTAATGTATAGTTTGTTCTTTAGTATGATTAGCGATTATAATTGCTAATTAATGTCCTTTACAACATATGAGTAATATTGGGGTGGGGCTTCCGTGACTTTGGCTTCGGTGCCTTTGTCTCTATCTCTCTCCTAACCAATAATTTTCTCTTATCAAAATAATTTATTTTAATCATTCAATCATCACTCTCTTTCCTCTAAAATACACTAAAGTCACCAAAGTCACCCAACACAAAGTCACTAAAGCCCCACCCTAATATTGGACCCTATCAATTATTGTTCATCATCATTGTCATCATATCCACTACATGTGATGAAAGGACTATGTTGCAATTATCCCTCTCATTTTTATTTATTTTGTTGTGTTTTTTTTTTTTGTGGTGCTTTATTTATTTTGTTGTTTCCTCTAGTTATTATGGTTTTGGCTGACACAGTAAAATTATTTGATTGTTTCATAGTCTTACATTGATTGGTTTTGAGTTTTTTTTGGTAAACTTATAAAACTTACCCAATTATGCAATTCTTTTTCAGAAAAGTTTCACAAACATGGGAGAAGGAGTCTGATCGTCCCGTGGAAGATGGTCATCAATGGAGAAAGTATGGCCAAAAAAAGATCTTGCACACCGATTTCCCAAGGTATATTTATACGAGTTTAATTAAGTACAAACCCATTTTACTTTTAAGATTGTCATCCAATCCAATCAAATTTCACTATTTGAACACATTATCATGTTAACTGATTTTTAAATTAATTAATTTAATTACTACGATGTCGAGATTTGATTTAATAATTAATTAGTAAAATGATTTATAATATCAATGTATATATAATTTAATTTCTTTACATCTTAAAGGATTGAGTCGATCAACTGATTTGAATAAAATGTTAAATGAGTTGAAGGAGTATCTTAGTTCAAATTTTAAAACTTATATTTAGTTTTACACAAAAAAAAATTCCTCTAATTCTTCTTTCTTAATATCTCTTCTATATGCTAAGAAGCTAAATGAATATTTATATTCTTTGCAGGAACTATTACAGGTGCACTCACAAACATGATCAAGGTTGCAAAGCAACAAAACAAGTGCAACAAATTCAAGAGGAACCACCTCTTTACAAAACAACCTACTATGGCCATCACACTTGTAGAATCTTGCAAAGCCCTGAGATCATAGAGGATTCTCCTTGTGACCAGTCTTCCATGTTCCTTAGCTTTGACAACTCTTTCCCAACACCAGCCAAACAAGACTGTCCATTTCTCTCAGTGAAAAAGGAGGATTGCAAGGAAGAGATTGTTCATCCTCCTCCTTCAAATGATTACCTCTCTGGACTCACTTTTGATGATCCAGAAAAGGATGTCACACTATCATCAACACTTGATTCTCATGATCAGTTAGGTGTCAACATTCCTGATATCATGTATGATGATGTCCTTAATTGGCCACTTTCTTGA
Protein sequence

>MS.gene92755.t1

MKNENLAHGSGRGKVIDELLKGRELANKLRNILNESGDIDNINGSTTPVAEDLLKEVLTTFTNSLLFLNNNPTSEGSDLQLTKSEDSLESNCKSTSIVKERRGCYKRRKVSQTWEKESDRPVEDGHQWRKYGQKKILHTDFPRNYYRCTHKHDQGCKATKQVQQIQEEPPLYKTTYYGHHTCRILQSPEIIEDSPCDQSSMFLSFDNSFPTPAKQDCPFLSVKKEDCKEEIVHPPPSNDYLSGLTFDDPEKDVTLSSTLDSHDQLGVNIPDIMYDDVLNWPLS