AlfalfaGEDB | MS.gene96083

M. sativa cultivar XinJiangDaYe / MS.gene96083

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96083.t1	AES79975.1	84.6	377	37	1	106	482	1	356	2.50E-117	432.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96083.t1	G7L0D1	84.6	377	37	1	106	482	1	356	1.8e-117	432.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene96083	0.808028	3.79E-50	-1.69E-46
MS.gene049824	MS.gene96083	0.833267	5.88E-56	-1.69E-46
MS.gene049825	MS.gene96083	0.833663	4.68E-56	-1.69E-46
MS.gene049873	MS.gene96083	0.820718	5.91E-53	-1.69E-46
MS.gene05016	MS.gene96083	0.801417	9.10E-49	-1.69E-46
MS.gene050807	MS.gene96083	0.813337	2.69E-51	-1.69E-46
MS.gene051700	MS.gene96083	0.803155	3.99E-49	-1.69E-46
MS.gene051719	MS.gene96083	0.817645	2.96E-52	-1.69E-46
MS.gene051720	MS.gene96083	0.805263	1.45E-49	-1.69E-46
MS.gene052133	MS.gene96083	0.817092	3.94E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96083.t1	MTR_7g075370	80.371	377	53	1	106	482	1	356	0.0	597
MS.gene96083.t1	MTR_7g075470	68.684	380	47	4	106	482	1	311	2.25e-168	477
MS.gene96083.t1	MTR_7g075185	83.636	220	25	1	11	230	520	728	1.54e-119	367
MS.gene96083.t1	MTR_7g075420	67.368	95	20	1	1	95	24	107	1.08e-23	95.9
MS.gene96083.t1	MTR_7g075170	59.649	114	27	4	2	115	524	618	1.59e-14	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 116 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATCTTGATAGCGAA+AGG	0.577594	7.4:-30011514	None:intergenic
AAAAGCTAGTGAGGTGCTTG+TGG	0.653025	7.4:+30010906	MS.gene96083:CDS
AAAAGTATAGATACGCTCAA+GGG	0.604119	7.4:+30011252	MS.gene96083:CDS
AAAAGTATATATACGCTCAA+GGG	0.531845	7.4:+30011315	MS.gene96083:CDS
AAAAGTGTAGATACACTCAA+AGG	0.556290	7.4:+30011189	MS.gene96083:CDS
AAAATAGCCAATGATACTCT+TGG	0.432979	7.4:+30011042	MS.gene96083:CDS
AAAGCGTAGATATGCTCAAG+AGG	0.605173	7.4:+30011379	MS.gene96083:CDS
AAAGTATAGATACGCTCAAG+GGG	0.633488	7.4:+30011253	MS.gene96083:CDS
AAAGTATAGATACGCTCAAG+GGG	0.641841	7.4:+30011442	MS.gene96083:CDS
AAAGTATATATACGCTCAAG+GGG	0.615609	7.4:+30011316	MS.gene96083:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGCCAATGATACTCT+TGG	+	chr7.4:30011042-30011061	MS.gene96083:CDS	30.0%
AAAATCAAAAACTGAAACGG+TGG	+	chr7.4:30009776-30009795	MS.gene96083:intron	30.0%
AAAGTATATATACGCTCAAG+GGG	+	chr7.4:30011316-30011335	MS.gene96083:CDS	30.0%
AAAGTGTAGATACACTCAAA+GGG	+	chr7.4:30011190-30011209	MS.gene96083:CDS	30.0%
AAATCTTTATAGGGTGAAAC+TGG	-	chr7.4:30010153-30010172	None:intergenic	30.0%
AACAGACATTATCGAAACAT+CGG	-	chr7.4:30010442-30010461	None:intergenic	30.0%
ACAAATCAAACGATGGAAAT+AGG	-	chr7.4:30011566-30011585	None:intergenic	30.0%
ACAGAAGATAAATTGCAGAA+TGG	-	chr7.4:30009224-30009243	None:intergenic	30.0%
AGTATTTGTAATTAAACCGG+TGG	-	chr7.4:30009616-30009635	None:intergenic	30.0%
ATGGTGCTTGAAATCTTTAT+AGG	-	chr7.4:30010163-30010182	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	30008603	30011632	30008603	ID=MS.gene96083
chr7.4	mRNA	30008603	30011632	30008603	ID=MS.gene96083.t1;Parent=MS.gene96083
chr7.4	exon	30008603	30008605	30008603	ID=MS.gene96083.t1.exon1;Parent=MS.gene96083.t1
chr7.4	CDS	30008603	30008605	30008603	ID=cds.MS.gene96083.t1;Parent=MS.gene96083.t1
chr7.4	exon	30008712	30008798	30008712	ID=MS.gene96083.t1.exon2;Parent=MS.gene96083.t1
chr7.4	CDS	30008712	30008798	30008712	ID=cds.MS.gene96083.t1;Parent=MS.gene96083.t1
chr7.4	exon	30009380	30009599	30009380	ID=MS.gene96083.t1.exon3;Parent=MS.gene96083.t1
chr7.4	CDS	30009380	30009599	30009380	ID=cds.MS.gene96083.t1;Parent=MS.gene96083.t1
chr7.4	exon	30010494	30011632	30010494	ID=MS.gene96083.t1.exon4;Parent=MS.gene96083.t1
chr7.4	CDS	30010494	30011632	30010494	ID=cds.MS.gene96083.t1;Parent=MS.gene96083.t1

Gene Sequence

>MS.gene96083

ATGGTATAATATTCTAATTAATATTTTGATTCTGCGACATCATATATGGTTCTGATGCTTATTGTTTTTGATATTTGTTGCTTTGACAAATATTGGATGTGGTGTTCAGTCTGAAGCTGGTGAAAAACAAGTGATTGCTCCAACATCTGCTACAGGACAATCTCAACCAAAAAGTGGTGCGAAATTATCGAAAGAGGTTAATAGCGATTATTTGCTGGCTGAAAATATAAACATTGCTATTTTGGTGTTTAGCATATAAACATTGCTATTTTGGTGTTTGGCACACAAATAAAATAAAGCAGACGTTATCTTTTTATTCTGTTCTCTCTTTGCCCTTTTTAGTGTGACCAAAATGCATGCTATATTAGAGTCTTATTGATGTTAGAGAATGTTTTCTATTTTCACTTTTATTTCTAATTATGAAATTTTTTACTTTTTTCTCGTTTTCAAGATTTGTACTAGAAAGAGTGAAAATAATTTTTTTATTGCACAACTATTTATTTGTTTTCACTGTATCATTTACAAATCTTTAGAACAGGAACCAAAGTGAAATAAAAACAAAAATGTTTTGTAACTGAAAGTGAATACATGAAATAAAAACAAAAATGTTTTCGAAAACCATTCTGCAATTTATCTTCTGTCTTGTTCTGTTTTATTTTTAACATTTGTCGGACATTAAAACAGAATTTATTGTGTTAAAATTACATTACACATTTATGAATGAACTGATAAATATTTTAATCTTCTGGATTTTGTTTTTATCTAAAAAATAAACAGGAGGAAATAAAAAGGGCACAGGATGCTGAAAGAGAAAAGAGAGCAGCTGCTAGGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTACAGAGAGAAGAATGGCTGCCCTCAAAAGTCAGGCTTATACTACAACCACTTCAGCTAATAGCCTTTCAGAGGCCAATGAATGTGGTTTAGTCGGGGATACAACATCCTTTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTTCTTTCCACCGGTTTAATTACAAATACTGCAGCACCTCATGCATGCATATACACAGATATCCTAGAAGATGGATGGCAATGTATTTTCCCAGAATTACTGTAATTCTTTTGCAAGTTAAGATTGCTCCCAAAATCTATTTTTTAATTACATGCTAAATTTTTAGCGAAAAAATCAAAAACTGAAACGGTGGAAGGAATGATTGGTAAAAATCAGTTAGAACATTCCTTCACCATGCTTTTCTAAACATGAACATAGTAAAATGACCAAAATGCACATGACATTGTTCCTGAATGGTTTTTCTTATTGTTCAACAAAGCACACGCTCTCCATTGCTGAGATTAGATGCTCCATCAGCCGATAAGATCCAGATCTGAGGACCTCCTTGATTGGCTAGGGATGAAAGCTCCGCTACAAAATCAGCGAGCACTTAGGATTTTATGCTTCCCCTTGGGACTAAGACTATATCATATTCAGACAATGAAACCGATCATGCAACCGTTCTGCCTTTTAGTGCAAGATGCTTACAGTGATTAATCCCCCACCAGTTTCACCCTATAAAGATTTCAAGCACCATTTTTTTTTTTAATTAGAAACAATAATTCTTGTATCGAAATCATTTTTGATAACTCAGGATGGCACAAGTTTCCTTTGTATTGGGAGAGGGAACCTGCCTATCTCAAAGGCTTTGATTATGATAAGTTAATCGAATCCGAGAGACATGCAGCAAAATTCTTAGAGACTTTTGTTCCCGTAAGTTGTAAGGACTTGATAGATAATGAATTTGATGCTGATGGACTCCAGAATTTACTTCATAATTTTTTTTTTTTTTGCCGATGTTTCGATAATGTCTGTTTTAAGCTTGTGCATTTGCATGTTGTTATGTAGGAAGAATGTCTCCTCTAAATGAAGCCGAGTTCAAGACCTATTTGGCAAAGGCTAGAGAAAAGAGAGCCTCAGTTTTGCAATTTGGTGCTGCTGAAGCAAAATTGGACGTTAGTGGTGTTACAATCCGCAGGCTCAAGAGAAAAGGTGGGGGAAACTCAAAGGAGGGATCACCGTCACTTTCAGACACAGAACCTATTGCTGTACCACCTTTGAACAATGTGACCGCTGCATGCGGTTCTAAGGTGGTTCTTCCTTCACCTAGGAAAAGGATTAAGAAGGAGAAGACTTGTGTCCCAATGGAAGGGACTGATATAACATCGCTGTGGGACAGGAGGTTTGATGGAATGGGTTTTGTGGACAGCAATCTAAGCTTCACGAAAGATGTGCAGGAGGTGAAGGAGTCTGGGTTGGAAAAAGCTAGTGAGGTGCTTGTGGCGTACAGCCTTCGCTCTGCTTTACTTGGGAAGGTGATTACGGACCAATTCAGAGCTGTACTGGGACATGAAAGAAACTGCCGAGATGAACTGAATTCAACCAAAGAAAAATTGAAAATAGCCAATGATACTCTTGGAGATATGAAGAAACAAATATTGAAGGTAAATAAGAGATTGGAGGAAGAACAGACTGCTCTGACTCAGTTGGAGAAAAAGACTGAAAATAACGAGGTTTTTGAGGAGGAGGTTGTTGGCTTGAATAAAAGTGTAGATACACTCAAAGGGAAATCTGCTGCGAAGGATATGGAAATTGAGGATTTGAAGAAAAGTATAGATACGCTCAAGGGGCAGTCTGCTGCGAAGGATATGGAAATTGAGGATTTGAAGAAAAGTATATATACGCTCAAGGGGCAATCTGCTGCGAAGGATATGGAAATTGAGGATTTGAAGAAAAGCGTAGATATGCTCAAGAGGCAATCCGCAACAAAAGATATGGAAATTGAGGATTTGAAGCAAAGTATAGATACGCTCAAGGGGCAATCCGCAGCGAAGGATATGGAAATTGAGGATTTGAAGGTAGACGCTGCCTTTCGCTATCAAGATGGTTTTGATAAGGCCATAGAACAAGTTCACATCCTATTTCCATCGTTTGATTTGTCGGAGGCTGACGCTATGAAGTCTGTGGTTGATGGAAAACTAGTATAA

Protein sequence

>MS.gene96083.t1

MSEAGEKQVIAPTSATGQSQPKSGAKLSKEEEIKRAQDAEREKRAAARDAEREKRAAATERRMAALKSQAYTTTTSANSLSEANECGLVGDTTSFSCCNSSLAGRMSPLNEAEFKTYLAKAREKRASVLQFGAAEAKLDVSGVTIRRLKRKGGGNSKEGSPSLSDTEPIAVPPLNNVTAACGSKVVLPSPRKRIKKEKTCVPMEGTDITSLWDRRFDGMGFVDSNLSFTKDVQEVKESGLEKASEVLVAYSLRSALLGKVITDQFRAVLGHERNCRDELNSTKEKLKIANDTLGDMKKQILKVNKRLEEEQTALTQLEKKTENNEVFEEEVVGLNKSVDTLKGKSAAKDMEIEDLKKSIDTLKGQSAAKDMEIEDLKKSIYTLKGQSAAKDMEIEDLKKSVDMLKRQSATKDMEIEDLKQSIDTLKGQSAAKDMEIEDLKVDAAFRYQDGFDKAIEQVHILFPSFDLSEADAMKSVVDGKLV