Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96613.t1 | KEH32598.1 | 70.7 | 300 | 21 | 3 | 6 | 239 | 352 | 650 | 3.20E-102 | 381.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96613.t1 | Q8RXF8 | 47.6 | 286 | 88 | 4 | 6 | 231 | 354 | 637 | 3.3e-63 | 243.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96613.t1 | A0A072UU32 | 70.7 | 300 | 21 | 3 | 6 | 239 | 352 | 650 | 2.3e-102 | 381.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene96613 | 0.814441 | 1.54E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene96613 | 0.815559 | 8.69E-52 | -1.69E-46 |
| MS.gene050029 | MS.gene96613 | 0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene96613 | 0.844361 | 7.93E-59 | -1.69E-46 |
| MS.gene052037 | MS.gene96613 | 0.800968 | 1.12E-48 | -1.69E-46 |
| MS.gene052447 | MS.gene96613 | 0.872057 | 4.26E-67 | -1.69E-46 |
| MS.gene05329 | MS.gene96613 | 0.84023 | 9.86E-58 | -1.69E-46 |
| MS.gene05415 | MS.gene96613 | 0.813426 | 2.57E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene96613 | 0.81071 | 1.01E-50 | -1.69E-46 |
| MS.gene05531 | MS.gene96613 | 0.802951 | 4.40E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene96613 | 0.805436 | 1.34E-49 | -1.69E-46 |
| MS.gene055952 | MS.gene96613 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene056272 | MS.gene96613 | 0.813986 | 1.94E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene96613 | 0.80435 | 2.25E-49 | -1.69E-46 |
| MS.gene059458 | MS.gene96613 | 0.834527 | 2.85E-56 | -1.69E-46 |
| MS.gene059459 | MS.gene96613 | 0.808215 | 3.45E-50 | -1.69E-46 |
| MS.gene059460 | MS.gene96613 | 0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene059584 | MS.gene96613 | 0.809708 | 1.66E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene96613 | 0.803315 | 3.70E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene96613 | 0.826702 | 2.35E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene96613 | 0.812665 | 3.78E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene96613 | -0.833977 | 3.91E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96613.t1 | MTR_4g129890 | 67.000 | 300 | 32 | 4 | 6 | 239 | 352 | 650 | 9.62e-125 | 368 |
| MS.gene96613.t1 | MTR_4g129310 | 60.000 | 235 | 39 | 3 | 6 | 186 | 376 | 609 | 5.12e-84 | 262 |
| MS.gene96613.t1 | MTR_1g082870 | 48.986 | 296 | 85 | 6 | 6 | 237 | 351 | 644 | 6.86e-83 | 260 |
| MS.gene96613.t1 | MTR_5g034140 | 46.809 | 282 | 90 | 6 | 6 | 230 | 191 | 469 | 7.95e-74 | 233 |
| MS.gene96613.t1 | MTR_5g034580 | 46.071 | 280 | 90 | 5 | 6 | 225 | 327 | 605 | 8.69e-68 | 220 |
| MS.gene96613.t1 | MTR_5g040690 | 40.149 | 269 | 100 | 5 | 6 | 214 | 350 | 617 | 5.34e-52 | 178 |
| MS.gene96613.t1 | MTR_5g034660 | 42.339 | 248 | 96 | 7 | 6 | 214 | 53 | 292 | 9.63e-51 | 168 |
| MS.gene96613.t1 | MTR_4g123543 | 62.857 | 140 | 32 | 4 | 106 | 228 | 35 | 171 | 6.83e-49 | 159 |
| MS.gene96613.t1 | MTR_7g094810 | 35.254 | 295 | 127 | 8 | 6 | 237 | 344 | 637 | 2.86e-47 | 165 |
| MS.gene96613.t1 | MTR_7g094810 | 47.407 | 135 | 66 | 3 | 106 | 237 | 509 | 641 | 2.42e-36 | 135 |
| MS.gene96613.t1 | MTR_7g094810 | 55.670 | 97 | 43 | 0 | 6 | 102 | 344 | 440 | 1.08e-32 | 125 |
| MS.gene96613.t1 | MTR_7g094810 | 55.670 | 97 | 43 | 0 | 6 | 102 | 344 | 440 | 4.14e-33 | 125 |
| MS.gene96613.t1 | MTR_7g094810 | 55.670 | 97 | 43 | 0 | 6 | 102 | 344 | 440 | 1.07e-32 | 125 |
| MS.gene96613.t1 | MTR_7g094810 | 55.670 | 97 | 43 | 0 | 6 | 102 | 344 | 440 | 1.13e-32 | 124 |
| MS.gene96613.t1 | MTR_1g072280 | 54.639 | 97 | 44 | 0 | 6 | 102 | 348 | 444 | 1.36e-29 | 116 |
| MS.gene96613.t1 | MTR_1g072280 | 37.273 | 110 | 67 | 2 | 106 | 215 | 509 | 616 | 9.49e-18 | 82.4 |
| MS.gene96613.t1 | MTR_4g129880 | 92.000 | 50 | 3 | 1 | 191 | 239 | 67 | 116 | 1.37e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene96613.t1 | AT3G63150 | 39.189 | 296 | 114 | 7 | 6 | 237 | 350 | 643 | 1.58e-59 | 198 |
| MS.gene96613.t1 | AT5G27540 | 43.956 | 273 | 93 | 5 | 6 | 219 | 354 | 625 | 4.41e-55 | 187 |
| MS.gene96613.t1 | AT5G27540 | 43.956 | 273 | 93 | 5 | 6 | 219 | 354 | 625 | 4.41e-55 | 187 |
| MS.gene96613.t1 | AT3G05310 | 36.213 | 301 | 120 | 10 | 6 | 237 | 206 | 503 | 8.98e-46 | 159 |
| MS.gene96613.t1 | AT3G05310 | 36.213 | 301 | 120 | 10 | 6 | 237 | 351 | 648 | 9.25e-45 | 159 |
| MS.gene96613.t1 | AT3G05310 | 36.918 | 279 | 107 | 9 | 6 | 218 | 206 | 481 | 4.55e-42 | 149 |
Find 47 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCAGGTTTCATTTAAAA+TGG | 0.236225 | 6.3:+57530074 | MS.gene96613:CDS |
| AATACTGTTCTGCTTGTTTC+AGG | 0.254696 | 6.3:+57530635 | MS.gene96613:CDS |
| ATTCCAATCAGTTTGTTGTT+AGG | 0.333971 | 6.3:+57530497 | MS.gene96613:CDS |
| CATCTTTAGCAGCAACTATA+AGG | 0.336248 | 6.3:-57530053 | None:intergenic |
| GCGGATGAGAGTGCAATTAC+AGG | 0.381789 | 6.3:+57529138 | MS.gene96613:CDS |
| TGGCTGCACAAGAATCTACT+AGG | 0.420449 | 6.3:+57530094 | MS.gene96613:CDS |
| GCTGGTCATGGAGAAGATTC+CGG | 0.432969 | 6.3:+57530012 | MS.gene96613:CDS |
| CTCATCCGCAGCATCCTTGT+AGG | 0.440652 | 6.3:-57529124 | None:intergenic |
| TTACCTAACAACAAACTGAT+TGG | 0.443356 | 6.3:-57530500 | None:intergenic |
| AACAACAAACTGATTGGAAT+AGG | 0.448574 | 6.3:-57530494 | None:intergenic |
| AGCATCCTTGTAGGGAGGTC+CGG | 0.454806 | 6.3:-57529115 | None:intergenic |
| TGGAGAAGATTCCGGCTTTG+AGG | 0.455390 | 6.3:+57530020 | MS.gene96613:CDS |
| AGCATTCCTGAAACTGATGT+TGG | 0.470176 | 6.3:+57530578 | MS.gene96613:CDS |
| GAGTAGCAGCTGTTACAATT+CGG | 0.477253 | 6.3:-57530541 | None:intergenic |
| TTTAATTTCAGTCCTTGGAC+CGG | 0.506591 | 6.3:+57529096 | MS.gene96613:CDS |
| GTTTCAGGAATGCTTAAATG+AGG | 0.514546 | 6.3:-57530569 | None:intergenic |
| CTGCTTTACATTGGTTACAC+TGG | 0.516213 | 6.3:+57529495 | MS.gene96613:CDS |
| GTGAAGAATCTGCTTTACAT+TGG | 0.528184 | 6.3:+57529486 | MS.gene96613:CDS |
| CTCGTAGAAATCGCTGGTCA+TGG | 0.529554 | 6.3:+57530000 | MS.gene96613:CDS |
| CATCTGCTATCCGCGTGACT+AGG | 0.534191 | 6.3:+57529526 | MS.gene96613:CDS |
| GCAAGAAGGCACCTCAAAGC+CGG | 0.540652 | 6.3:-57530031 | None:intergenic |
| AGTTGCTGCTAAAGATGACC+AGG | 0.545197 | 6.3:+57530059 | MS.gene96613:CDS |
| TATTGCAGTTGGAGCTGCAA+TGG | 0.549909 | 6.3:+57530834 | MS.gene96613:intron |
| TTGTAGGGAGGTCCGGTCCA+AGG | 0.550794 | 6.3:-57529108 | None:intergenic |
| AGATCGCAAATTGCAACTCT+CGG | 0.551031 | 6.3:+57529560 | MS.gene96613:CDS |
| TAGTCGAGACATGGGAGTAG+AGG | 0.554773 | 6.3:+57530469 | MS.gene96613:CDS |
| TCATCCGCAGCATCCTTGTA+GGG | 0.559132 | 6.3:-57529123 | None:intergenic |
| AAACTTCTCGTAGAAATCGC+TGG | 0.560055 | 6.3:+57529994 | MS.gene96613:CDS |
| GGAGCTGCAATGGCATTCGT+TGG | 0.560148 | 6.3:+57530844 | MS.gene96613:CDS |
| GTCACGCGGATAGCAGATGA+TGG | 0.567232 | 6.3:-57529522 | None:intergenic |
| TGAGCCTCGTGTACAACTTG+CGG | 0.570983 | 6.3:-57530607 | None:intergenic |
| TTAGGTATGATGAGTCCTCA+TGG | 0.591531 | 6.3:+57529959 | MS.gene96613:intron |
| CTGCTATCCGCGTGACTAGG+AGG | 0.594111 | 6.3:+57529529 | MS.gene96613:CDS |
| TTGGACCGGACCTCCCTACA+AGG | 0.594336 | 6.3:+57529110 | MS.gene96613:CDS |
| GCAGCAACTATAAGGCAAGA+AGG | 0.602791 | 6.3:-57530045 | None:intergenic |
| TTTCAGGAATGCTTAAATGA+GGG | 0.604932 | 6.3:-57530568 | None:intergenic |
| ACCTCCCTACAAGGATGCTG+CGG | 0.612470 | 6.3:+57529119 | MS.gene96613:CDS |
| GGCTGCACAAGAATCTACTA+GGG | 0.614201 | 6.3:+57530095 | MS.gene96613:CDS |
| ATTGCAGGTTAGTCGAGACA+TGG | 0.623944 | 6.3:+57530460 | MS.gene96613:intron |
| GTATGATGAGTCCTCATGGA+GGG | 0.643290 | 6.3:+57529963 | MS.gene96613:CDS |
| TCCGCAGCATCCTTGTAGGG+AGG | 0.647535 | 6.3:-57529120 | None:intergenic |
| TAGCAGCTGTTACAATTCGG+AGG | 0.659396 | 6.3:-57530538 | None:intergenic |
| TTGCAGGTTAGTCGAGACAT+GGG | 0.668809 | 6.3:+57530461 | MS.gene96613:intron |
| TTTAGATGATGCCCTCCATG+AGG | 0.709956 | 6.3:-57529974 | None:intergenic |
| AAAGCCGCAAGTTGTACACG+AGG | 0.712111 | 6.3:+57530603 | MS.gene96613:CDS |
| GGTATGATGAGTCCTCATGG+AGG | 0.721624 | 6.3:+57529962 | MS.gene96613:intron |
| AACTTCGCCTCCTAGTCACG+CGG | 0.726874 | 6.3:-57529536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTACTAAATATTCATTTT+AGG | + | chr6.3:57529941-57529960 | MS.gene96613:intron | 15.0% |
| !! | ACATGAAATTACATATAACT+TGG | - | chr6.3:57529852-57529871 | None:intergenic | 20.0% |
| !! | ATAAAAGACTTCTCAAATTA+AGG | - | chr6.3:57529292-57529311 | None:intergenic | 20.0% |
| !! | ATAATTCATACTAAGTACAT+GGG | + | chr6.3:57529892-57529911 | MS.gene96613:intron | 20.0% |
| !! | TAAAAGACTTCTCAAATTAA+GGG | - | chr6.3:57529291-57529310 | None:intergenic | 20.0% |
| !! | TAACACATGATATAAAATTG+AGG | - | chr6.3:57529331-57529350 | None:intergenic | 20.0% |
| !! | TATAATTCATACTAAGTACA+TGG | + | chr6.3:57529891-57529910 | MS.gene96613:intron | 20.0% |
| !! | TTAATTCATAATATTGCAGT+TGG | + | chr6.3:57530823-57530842 | MS.gene96613:intron | 20.0% |
| !!! | GAATTATAATTGGCTTATTT+AGG | + | chr6.3:57530728-57530747 | MS.gene96613:intron | 20.0% |
| !!! | TAATTCAGTGTTTTGTTTTT+GGG | + | chr6.3:57529592-57529611 | MS.gene96613:CDS | 20.0% |
| !!! | TATTGAAATCTTTTATTCGA+TGG | + | chr6.3:57529640-57529659 | MS.gene96613:CDS | 20.0% |
| ! | ATCATTAAATATGTGCTTGA+TGG | + | chr6.3:57530389-57530408 | MS.gene96613:intron | 25.0% |
| ! | GCTTGAAAGAGAATTATAAT+TGG | + | chr6.3:57530718-57530737 | MS.gene96613:intron | 25.0% |
| ! | GGATTGTAAATTTCAGAATA+TGG | - | chr6.3:57529722-57529741 | None:intergenic | 25.0% |
| ! | TATGTAATTTCATGTCCATT+TGG | + | chr6.3:57529857-57529876 | MS.gene96613:intron | 25.0% |
| ! | TCAGTAAAATTCAACAAAGA+GGG | - | chr6.3:57529222-57529241 | None:intergenic | 25.0% |
| ! | TTCAGTAAAATTCAACAAAG+AGG | - | chr6.3:57529223-57529242 | None:intergenic | 25.0% |
| !! | ACTTTATGTTTTATGTACAG+TGG | + | chr6.3:57529430-57529449 | MS.gene96613:intron | 25.0% |
| !! | ATTTTACTGAACAATGTTTG+TGG | + | chr6.3:57529232-57529251 | MS.gene96613:intron | 25.0% |
| !! | CTTTATGTTTTATGTACAGT+GGG | + | chr6.3:57529431-57529450 | MS.gene96613:intron | 25.0% |
| !! | GGTATTTTCATTATACGTTA+AGG | + | chr6.3:57529661-57529680 | MS.gene96613:intron | 25.0% |
| !! | TTTTACTGAACAATGTTTGT+GGG | + | chr6.3:57529233-57529252 | MS.gene96613:intron | 25.0% |
| !!! | GTAATTCAGTGTTTTGTTTT+TGG | + | chr6.3:57529591-57529610 | MS.gene96613:CDS | 25.0% |
| !!! | TGATTTTTAATTTCAGTCCT+TGG | + | chr6.3:57529091-57529110 | MS.gene96613:CDS | 25.0% |
| AACAACAAACTGATTGGAAT+AGG | - | chr6.3:57530497-57530516 | None:intergenic | 30.0% | |
| AACCATCCAACAATTATCTA+CGG | - | chr6.3:57530167-57530186 | None:intergenic | 30.0% | |
| TATACACAATCGATACCAAA+TGG | - | chr6.3:57529875-57529894 | None:intergenic | 30.0% | |
| TGACCAGGTTTCATTTAAAA+TGG | + | chr6.3:57530074-57530093 | MS.gene96613:CDS | 30.0% | |
| TGTTGTTGAATTCATATTGC+AGG | + | chr6.3:57529696-57529715 | MS.gene96613:intron | 30.0% | |
| TTACCTAACAACAAACTGAT+TGG | - | chr6.3:57530503-57530522 | None:intergenic | 30.0% | |
| TTTCAGGAATGCTTAAATGA+GGG | - | chr6.3:57530571-57530590 | None:intergenic | 30.0% | |
| ! | ACTTGATGCATTTTTGTCAA+AGG | + | chr6.3:57529167-57529186 | MS.gene96613:CDS | 30.0% |
| ! | TTTTATCTGCAATAACGCAA+TGG | + | chr6.3:57529383-57529402 | MS.gene96613:intron | 30.0% |
| !! | ATTCCAATCAGTTTGTTGTT+AGG | + | chr6.3:57530497-57530516 | MS.gene96613:CDS | 30.0% |
| AACGAAGACAACAGAAAACA+AGG | - | chr6.3:57530359-57530378 | None:intergenic | 35.0% | |
| AATACTGTTCTGCTTGTTTC+AGG | + | chr6.3:57530635-57530654 | MS.gene96613:CDS | 35.0% | |
| AATTTACAATCCAACCAACG+AGG | + | chr6.3:57529730-57529749 | MS.gene96613:intron | 35.0% | |
| ATACTGCCGTAGATAATTGT+TGG | + | chr6.3:57530158-57530177 | MS.gene96613:intron | 35.0% | |
| CATCTTTAGCAGCAACTATA+AGG | - | chr6.3:57530056-57530075 | None:intergenic | 35.0% | |
| CTAAGTACATGGGACAATAT+TGG | + | chr6.3:57529902-57529921 | MS.gene96613:intron | 35.0% | |
| CTATCTAGATTCTAGTGCAA+TGG | - | chr6.3:57530263-57530282 | None:intergenic | 35.0% | |
| GACTAACCTGCAATATACAT+TGG | - | chr6.3:57530454-57530473 | None:intergenic | 35.0% | |
| GTGAAGAATCTGCTTTACAT+TGG | + | chr6.3:57529486-57529505 | MS.gene96613:CDS | 35.0% | |
| GTTTCAGGAATGCTTAAATG+AGG | - | chr6.3:57530572-57530591 | None:intergenic | 35.0% | |
| ! | CTTTTTCCAACATCAGTTTC+AGG | - | chr6.3:57530587-57530606 | None:intergenic | 35.0% |
| ! | GGCTTATTTAGGCTTTGATT+CGG | + | chr6.3:57530739-57530758 | MS.gene96613:intron | 35.0% |
| ! | TCTGCTTGTTTCAGGTATAT+AGG | + | chr6.3:57530643-57530662 | MS.gene96613:intron | 35.0% |
| ! | TTTAATTTCAGTCCTTGGAC+CGG | + | chr6.3:57529096-57529115 | MS.gene96613:CDS | 35.0% |
| !! | CAGCCATTTTAAATGAAACC+TGG | - | chr6.3:57530080-57530099 | None:intergenic | 35.0% |
| AAACTTCTCGTAGAAATCGC+TGG | + | chr6.3:57529994-57530013 | MS.gene96613:CDS | 40.0% | |
| AACAGAATAACGATCCTCGT+TGG | - | chr6.3:57529747-57529766 | None:intergenic | 40.0% | |
| AACTTGGAAGCTCATAGATG+AGG | - | chr6.3:57529836-57529855 | None:intergenic | 40.0% | |
| AGATCGCAAATTGCAACTCT+CGG | + | chr6.3:57529560-57529579 | MS.gene96613:CDS | 40.0% | |
| AGCATTCCTGAAACTGATGT+TGG | + | chr6.3:57530578-57530597 | MS.gene96613:CDS | 40.0% | |
| ATACTGCAAAGCCTGATGTT+CGG | + | chr6.3:57530286-57530305 | MS.gene96613:intron | 40.0% | |
| CCAGCAAACTGTAAAACACT+CGG | - | chr6.3:57530317-57530336 | None:intergenic | 40.0% | |
| GAGTAGCAGCTGTTACAATT+CGG | - | chr6.3:57530544-57530563 | None:intergenic | 40.0% | |
| GATGTGCCAATGTATATTGC+AGG | + | chr6.3:57530445-57530464 | MS.gene96613:intron | 40.0% | |
| GATTCTAGTGCAATGGCTAT+AGG | - | chr6.3:57530256-57530275 | None:intergenic | 40.0% | |
| TAAGTCACTGTGAGTTTGCA+TGG | + | chr6.3:57529786-57529805 | MS.gene96613:intron | 40.0% | |
| TAGTGCAATGGCTATAGGAA+AGG | - | chr6.3:57530251-57530270 | None:intergenic | 40.0% | |
| TGCCGTAGATAATTGTTGGA+TGG | + | chr6.3:57530162-57530181 | MS.gene96613:intron | 40.0% | |
| TTAGGTATGATGAGTCCTCA+TGG | + | chr6.3:57529959-57529978 | MS.gene96613:intron | 40.0% | |
| TTCTGCTCAAAAAAATGCGC+AGG | + | chr6.3:57530879-57530898 | MS.gene96613:CDS | 40.0% | |
| ! | CTGCTTTACATTGGTTACAC+TGG | + | chr6.3:57529495-57529514 | MS.gene96613:CDS | 40.0% |
| !! | CGAGTGTTTTACAGTTTGCT+GGG | + | chr6.3:57530315-57530334 | MS.gene96613:intron | 40.0% |
| !!! | TGTTTTGTTTTTGGGCCCAA+GGG | + | chr6.3:57529600-57529619 | MS.gene96613:CDS | 40.0% |
| ACCCAACTCCACAATCTCTA+CGG | - | chr6.3:57530220-57530239 | None:intergenic | 45.0% | |
| AGTTGCTGCTAAAGATGACC+AGG | + | chr6.3:57530059-57530078 | MS.gene96613:CDS | 45.0% | |
| CAAAGAGGGAATAGAGACCA+AGG | - | chr6.3:57529208-57529227 | None:intergenic | 45.0% | |
| CAATGTTTGTGGGAGAGTGA+TGG | + | chr6.3:57529243-57529262 | MS.gene96613:intron | 45.0% | |
| GAATAACGATCCTCGTTGGT+TGG | - | chr6.3:57529743-57529762 | None:intergenic | 45.0% | |
| GCAGCAACTATAAGGCAAGA+AGG | - | chr6.3:57530048-57530067 | None:intergenic | 45.0% | |
| GGCTGCACAAGAATCTACTA+GGG | + | chr6.3:57530095-57530114 | MS.gene96613:CDS | 45.0% | |
| GTATGATGAGTCCTCATGGA+GGG | + | chr6.3:57529963-57529982 | MS.gene96613:CDS | 45.0% | |
| TAGCAGCTGTTACAATTCGG+AGG | - | chr6.3:57530541-57530560 | None:intergenic | 45.0% | |
| TATTGCAGTTGGAGCTGCAA+TGG | + | chr6.3:57530834-57530853 | MS.gene96613:intron | 45.0% | |
| TGGCTGCACAAGAATCTACT+AGG | + | chr6.3:57530094-57530113 | MS.gene96613:CDS | 45.0% | |
| TTTAGATGATGCCCTCCATG+AGG | - | chr6.3:57529977-57529996 | None:intergenic | 45.0% | |
| ! | ATTGCAGGTTAGTCGAGACA+TGG | + | chr6.3:57530460-57530479 | MS.gene96613:intron | 45.0% |
| ! | CCGAGTGTTTTACAGTTTGC+TGG | + | chr6.3:57530314-57530333 | MS.gene96613:intron | 45.0% |
| ! | GAAGATTTTCCAGCACCCTT+GGG | - | chr6.3:57529618-57529637 | None:intergenic | 45.0% |
| ! | GGTGCTCAAGTCTTATACCT+TGG | + | chr6.3:57529188-57529207 | MS.gene96613:intron | 45.0% |
| ! | TGAAGATTTTCCAGCACCCT+TGG | - | chr6.3:57529619-57529638 | None:intergenic | 45.0% |
| ! | TTGCAGGTTAGTCGAGACAT+GGG | + | chr6.3:57530461-57530480 | MS.gene96613:intron | 45.0% |
| !!! | GAGAGTGATGGACTTTTCGA+GGG | + | chr6.3:57529255-57529274 | MS.gene96613:intron | 45.0% |
| !!! | GTGTTTTGTTTTTGGGCCCA+AGG | + | chr6.3:57529599-57529618 | MS.gene96613:CDS | 45.0% |
| AAAGCCGCAAGTTGTACACG+AGG | + | chr6.3:57530603-57530622 | MS.gene96613:CDS | 50.0% | |
| CTCGTAGAAATCGCTGGTCA+TGG | + | chr6.3:57530000-57530019 | MS.gene96613:CDS | 50.0% | |
| GCATACTGCCGTAGAGATTG+TGG | + | chr6.3:57530209-57530228 | MS.gene96613:intron | 50.0% | |
| GCCGTAGAGATTGTGGAGTT+GGG | + | chr6.3:57530216-57530235 | MS.gene96613:intron | 50.0% | |
| GCTGGTCATGGAGAAGATTC+CGG | + | chr6.3:57530012-57530031 | MS.gene96613:CDS | 50.0% | |
| GGTATGATGAGTCCTCATGG+AGG | + | chr6.3:57529962-57529981 | MS.gene96613:intron | 50.0% | |
| TAGTCGAGACATGGGAGTAG+AGG | + | chr6.3:57530469-57530488 | MS.gene96613:CDS | 50.0% | |
| TCATCCGCAGCATCCTTGTA+GGG | - | chr6.3:57529126-57529145 | None:intergenic | 50.0% | |
| TGAGCCTCGTGTACAACTTG+CGG | - | chr6.3:57530610-57530629 | None:intergenic | 50.0% | |
| TGCCGTAGAGATTGTGGAGT+TGG | + | chr6.3:57530215-57530234 | MS.gene96613:intron | 50.0% | |
| TGGAGAAGATTCCGGCTTTG+AGG | + | chr6.3:57530020-57530039 | MS.gene96613:CDS | 50.0% | |
| ! | GCGGATGAGAGTGCAATTAC+AGG | + | chr6.3:57529138-57529157 | MS.gene96613:CDS | 50.0% |
| !!! | GGAGAGTGATGGACTTTTCG+AGG | + | chr6.3:57529254-57529273 | MS.gene96613:intron | 50.0% |
| AACTTCGCCTCCTAGTCACG+CGG | - | chr6.3:57529539-57529558 | None:intergenic | 55.0% | |
| ACCTCCCTACAAGGATGCTG+CGG | + | chr6.3:57529119-57529138 | MS.gene96613:CDS | 55.0% | |
| ACTCGGCTATGCCGAACATC+AGG | - | chr6.3:57530300-57530319 | None:intergenic | 55.0% | |
| AGCATCCTTGTAGGGAGGTC+CGG | - | chr6.3:57529118-57529137 | None:intergenic | 55.0% | |
| CATCTGCTATCCGCGTGACT+AGG | + | chr6.3:57529526-57529545 | MS.gene96613:CDS | 55.0% | |
| CTCATCCGCAGCATCCTTGT+AGG | - | chr6.3:57529127-57529146 | None:intergenic | 55.0% | |
| GGAGCTGCAATGGCATTCGT+TGG | + | chr6.3:57530844-57530863 | MS.gene96613:CDS | 55.0% | |
| GTCACGCGGATAGCAGATGA+TGG | - | chr6.3:57529525-57529544 | None:intergenic | 55.0% | |
| !! | GCAAGAAGGCACCTCAAAGC+CGG | - | chr6.3:57530034-57530053 | None:intergenic | 55.0% |
| CTGCTATCCGCGTGACTAGG+AGG | + | chr6.3:57529529-57529548 | MS.gene96613:CDS | 60.0% | |
| TCCGCAGCATCCTTGTAGGG+AGG | - | chr6.3:57529123-57529142 | None:intergenic | 60.0% | |
| TTGGACCGGACCTCCCTACA+AGG | + | chr6.3:57529110-57529129 | MS.gene96613:CDS | 60.0% | |
| TTGTAGGGAGGTCCGGTCCA+AGG | - | chr6.3:57529111-57529130 | None:intergenic | 60.0% | |
| !! | GTTTTTGGGCCCAAGGGTGC+TGG | + | chr6.3:57529606-57529625 | MS.gene96613:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 57529090 | 57530909 | 57529090 | ID=MS.gene96613 |
| chr6.3 | mRNA | 57529090 | 57530909 | 57529090 | ID=MS.gene96613.t1;Parent=MS.gene96613 |
| chr6.3 | exon | 57529090 | 57529188 | 57529090 | ID=MS.gene96613.t1.exon1;Parent=MS.gene96613.t1 |
| chr6.3 | CDS | 57529090 | 57529188 | 57529090 | ID=cds.MS.gene96613.t1;Parent=MS.gene96613.t1 |
| chr6.3 | exon | 57529450 | 57529661 | 57529450 | ID=MS.gene96613.t1.exon2;Parent=MS.gene96613.t1 |
| chr6.3 | CDS | 57529450 | 57529661 | 57529450 | ID=cds.MS.gene96613.t1;Parent=MS.gene96613.t1 |
| chr6.3 | exon | 57529963 | 57530116 | 57529963 | ID=MS.gene96613.t1.exon3;Parent=MS.gene96613.t1 |
| chr6.3 | CDS | 57529963 | 57530116 | 57529963 | ID=cds.MS.gene96613.t1;Parent=MS.gene96613.t1 |
| chr6.3 | exon | 57530467 | 57530656 | 57530467 | ID=MS.gene96613.t1.exon4;Parent=MS.gene96613.t1 |
| chr6.3 | CDS | 57530467 | 57530656 | 57530467 | ID=cds.MS.gene96613.t1;Parent=MS.gene96613.t1 |
| chr6.3 | exon | 57530842 | 57530909 | 57530842 | ID=MS.gene96613.t1.exon5;Parent=MS.gene96613.t1 |
| chr6.3 | CDS | 57530842 | 57530909 | 57530842 | ID=cds.MS.gene96613.t1;Parent=MS.gene96613.t1 |
| Gene Sequence |
| Protein sequence |
