Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97479.t1 | XP_013448631.1 | 100 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 4.80E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97479.t1 | Q9ZTN2 | 90.2 | 153 | 15 | 0 | 1 | 153 | 63 | 215 | 6.1e-79 | 294.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97479.t1 | I3SA95 | 100.0 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 3.4e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene97479 | -0.80239 | 5.74E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene97479 | -0.813569 | 2.40E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene97479 | -0.815667 | 8.22E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene97479 | -0.821738 | 3.44E-53 | -1.69E-46 |
| MS.gene050237 | MS.gene97479 | -0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene97479 | 0.82041 | 6.96E-53 | -1.69E-46 |
| MS.gene050680 | MS.gene97479 | -0.819132 | 1.36E-52 | -1.69E-46 |
| MS.gene050750 | MS.gene97479 | -0.815119 | 1.09E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene97479 | -0.822104 | 2.83E-53 | -1.69E-46 |
| MS.gene051924 | MS.gene97479 | 0.806632 | 7.49E-50 | -1.69E-46 |
| MS.gene051926 | MS.gene97479 | 0.814924 | 1.20E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene97479 | -0.81159 | 6.49E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene97479 | 0.86245 | 5.03E-64 | -1.69E-46 |
| MS.gene052426 | MS.gene97479 | -0.816593 | 5.10E-52 | -1.69E-46 |
| MS.gene052965 | MS.gene97479 | 0.838264 | 3.19E-57 | -1.69E-46 |
| MS.gene053006 | MS.gene97479 | -0.800323 | 1.52E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene97479 | -0.807041 | 6.13E-50 | -1.69E-46 |
| MS.gene053188 | MS.gene97479 | -0.811888 | 5.59E-51 | -1.69E-46 |
| MS.gene053216 | MS.gene97479 | -0.800534 | 1.38E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene97479 | -0.818356 | 2.05E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene97479 | 0.803056 | 4.18E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene97479 | -0.816536 | 5.26E-52 | -1.69E-46 |
| MS.gene054537 | MS.gene97479 | -0.802746 | 4.85E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene97479 | -0.81095 | 8.93E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene97479 | -0.84122 | 5.42E-58 | -1.69E-46 |
| MS.gene05510 | MS.gene97479 | -0.824231 | 9.03E-54 | -1.69E-46 |
| MS.gene055230 | MS.gene97479 | -0.806377 | 8.47E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene97479 | -0.851761 | 7.19E-61 | -1.69E-46 |
| MS.gene056979 | MS.gene97479 | -0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene97479 | -0.814 | 1.92E-51 | -1.69E-46 |
| MS.gene057156 | MS.gene97479 | 0.824041 | 1.00E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene97479 | -0.837769 | 4.27E-57 | -1.69E-46 |
| MS.gene058595 | MS.gene97479 | -0.800519 | 1.39E-48 | -1.69E-46 |
| MS.gene059128 | MS.gene97479 | -0.802686 | 4.99E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene97479 | -0.827981 | 1.16E-54 | -1.69E-46 |
| MS.gene059899 | MS.gene97479 | -0.806972 | 6.34E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene97479 | -0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene97479 | 0.824763 | 6.77E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene97479 | -0.803744 | 3.01E-49 | -1.69E-46 |
| MS.gene060634 | MS.gene97479 | 0.833313 | 5.73E-56 | -1.69E-46 |
| MS.gene060683 | MS.gene97479 | -0.831545 | 1.57E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene97479 | -0.824035 | 1.00E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene97479 | -0.816549 | 5.22E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene97479 | -0.819383 | 1.20E-52 | -1.69E-46 |
| MS.gene061040 | MS.gene97479 | 0.807479 | 4.95E-50 | -1.69E-46 |
| MS.gene061114 | MS.gene97479 | 0.800522 | 1.39E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97479.t1 | MTR_7g056337 | 100.000 | 153 | 0 | 0 | 1 | 153 | 63 | 215 | 2.29e-112 | 317 |
| MS.gene97479.t1 | MTR_8g087430 | 71.242 | 153 | 44 | 0 | 1 | 153 | 63 | 215 | 6.33e-79 | 233 |
| MS.gene97479.t1 | MTR_4g075550 | 34.839 | 155 | 86 | 5 | 12 | 153 | 117 | 269 | 2.14e-22 | 90.1 |
| MS.gene97479.t1 | MTR_3g113920 | 34.783 | 161 | 90 | 5 | 6 | 153 | 111 | 269 | 9.68e-22 | 88.6 |
| MS.gene97479.t1 | MTR_8g012615 | 33.129 | 163 | 94 | 3 | 1 | 150 | 40 | 200 | 6.22e-19 | 79.7 |
| MS.gene97479.t1 | MTR_8g012595 | 31.579 | 152 | 88 | 3 | 12 | 149 | 118 | 267 | 3.51e-16 | 73.6 |
| MS.gene97479.t1 | MTR_8g012605 | 36.036 | 111 | 64 | 3 | 1 | 107 | 107 | 214 | 2.91e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97479.t1 | AT3G25040 | 85.621 | 153 | 22 | 0 | 1 | 153 | 63 | 215 | 9.09e-98 | 281 |
| MS.gene97479.t1 | AT1G29330 | 70.588 | 153 | 45 | 0 | 1 | 153 | 1 | 153 | 1.15e-79 | 233 |
| MS.gene97479.t1 | AT1G29330 | 70.588 | 153 | 45 | 0 | 1 | 153 | 63 | 215 | 1.34e-79 | 234 |
| MS.gene97479.t1 | AT1G75760 | 34.783 | 161 | 90 | 5 | 6 | 153 | 111 | 269 | 2.04e-22 | 90.1 |
| MS.gene97479.t1 | AT1G19970 | 35.484 | 155 | 85 | 5 | 12 | 153 | 117 | 269 | 5.52e-22 | 89.0 |
| MS.gene97479.t1 | AT4G38790 | 33.735 | 166 | 95 | 5 | 1 | 153 | 107 | 270 | 2.28e-21 | 87.4 |
| MS.gene97479.t1 | AT1G75760 | 33.784 | 148 | 84 | 4 | 6 | 141 | 111 | 256 | 1.07e-20 | 85.5 |
| MS.gene97479.t1 | AT3G25160 | 33.333 | 156 | 87 | 5 | 6 | 147 | 113 | 265 | 9.16e-20 | 83.2 |
| MS.gene97479.t1 | AT2G21190 | 31.928 | 166 | 98 | 5 | 1 | 153 | 103 | 266 | 1.45e-19 | 82.8 |
| MS.gene97479.t1 | AT1G75760 | 35.238 | 105 | 63 | 2 | 6 | 107 | 111 | 213 | 7.16e-17 | 74.7 |
| MS.gene97479.t1 | AT1G19970 | 36.364 | 99 | 58 | 2 | 12 | 107 | 117 | 213 | 4.28e-16 | 72.8 |
Find 34 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGAGAAATTCACATTTA+AGG | 0.174751 | 7.4:-48339208 | MS.gene97479:CDS |
| TGTTATGAAGTTGATATTCT+TGG | 0.275463 | 7.4:-48339358 | None:intergenic |
| GGACAATATGTCTTTCTTCT+TGG | 0.280895 | 7.4:-48338954 | MS.gene97479:CDS |
| AGTATTGCCCTGCTTATTGT+TGG | 0.324545 | 7.4:-48339241 | MS.gene97479:CDS |
| AGAAACATTGACAATTTAAC+AGG | 0.337581 | 7.4:-48338975 | MS.gene97479:CDS |
| GACAATATGTCTTTCTTCTT+GGG | 0.345288 | 7.4:-48338953 | MS.gene97479:intron |
| GAGCACTATACATTCTCAAC+TGG | 0.354642 | 7.4:-48338215 | MS.gene97479:CDS |
| TGAATTTCTCATTGATAAGT+AGG | 0.405613 | 7.4:+48339217 | None:intergenic |
| CAGTACCAGTTGAGGAAGTA+TGG | 0.407791 | 7.4:+48339010 | None:intergenic |
| TGGCAACAGCTTCCAAATAC+AGG | 0.408291 | 7.4:+48339030 | None:intergenic |
| GTTATGAAGTTGATATTCTT+GGG | 0.424245 | 7.4:-48339357 | MS.gene97479:CDS |
| TGTTGCCATACTTCCTCAAC+TGG | 0.450840 | 7.4:-48339015 | MS.gene97479:CDS |
| CCGAGCCCCACTTTGTCCAT+TGG | 0.453725 | 7.4:-48338176 | MS.gene97479:CDS |
| ATGCTGGCAAATGAAGCTTC+TGG | 0.490077 | 7.4:+48337851 | None:intergenic |
| AAGTAGGGCCAACAATAAGC+AGG | 0.512666 | 7.4:+48339233 | None:intergenic |
| TAGATCATATGACAAAGATC+AGG | 0.514146 | 7.4:-48339286 | MS.gene97479:CDS |
| CCAATGGACAAAGTGGGGCT+CGG | 0.529481 | 7.4:+48338176 | None:intergenic |
| TACTTATCCAATGGACAAAG+TGG | 0.529817 | 7.4:+48338169 | None:intergenic |
| TATGGAGAATTACACTATGC+TGG | 0.546192 | 7.4:+48337835 | None:intergenic |
| CTTTGTAGCAGTACCAGTTG+AGG | 0.551696 | 7.4:+48339002 | None:intergenic |
| TTTCTATTGTATGGTACATG+AGG | 0.554169 | 7.4:-48339326 | MS.gene97479:CDS |
| TCTTCTACTACTATTTCCAA+AGG | 0.567268 | 7.4:-48337975 | MS.gene97479:intron |
| TGAGAAATTCACATTTAAGG+AGG | 0.576216 | 7.4:-48339205 | MS.gene97479:intron |
| GAATTTCTCATTGATAAGTA+GGG | 0.579233 | 7.4:+48339218 | None:intergenic |
| ACTTATCCAATGGACAAAGT+GGG | 0.585109 | 7.4:+48338170 | None:intergenic |
| TACTAGAAAATAGTGACGGA+AGG | 0.599670 | 7.4:+48339260 | None:intergenic |
| ACAGAATTATACTTATCCAA+TGG | 0.602023 | 7.4:+48338160 | None:intergenic |
| GGCAACAGCTTCCAAATACA+GGG | 0.635959 | 7.4:+48339031 | None:intergenic |
| CTTATCCAATGGACAAAGTG+GGG | 0.636328 | 7.4:+48338171 | None:intergenic |
| TATACATGGAATAGGTGATG+TGG | 0.652075 | 7.4:-48339061 | MS.gene97479:intron |
| AGCACTATACATTCTCAACT+GGG | 0.652774 | 7.4:-48338214 | MS.gene97479:CDS |
| GCAATACTAGAAAATAGTGA+CGG | 0.652982 | 7.4:+48339256 | None:intergenic |
| ATGATCTACGAACAATCTTG+TGG | 0.654874 | 7.4:+48339301 | None:intergenic |
| AGTAGGGCCAACAATAAGCA+GGG | 0.670399 | 7.4:+48339234 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATTAACATAAATAAAA+TGG | + | chr7.4:48339276-48339295 | None:intergenic | 10.0% |
| !! | ATGCAAATATATAATGTTAA+AGG | + | chr7.4:48338287-48338306 | None:intergenic | 15.0% |
| !! | CTATAATAAAAAATAAGCAA+TGG | - | chr7.4:48338854-48338873 | MS.gene97479:intron | 15.0% |
| !! | CTAGATAAATTATAGCTAAT+GGG | - | chr7.4:48338607-48338626 | MS.gene97479:intron | 20.0% |
| !! | TAAAAACATTCAAACATGTA+TGG | + | chr7.4:48338069-48338088 | None:intergenic | 20.0% |
| !! | TAGATAAATTATAGCTAATG+GGG | - | chr7.4:48338608-48338627 | MS.gene97479:intron | 20.0% |
| !!! | AGTTGAAAGTTTTTATTTGT+TGG | - | chr7.4:48338741-48338760 | MS.gene97479:intron | 20.0% |
| !!! | TCTTGTTTAATTGTTATCAT+TGG | - | chr7.4:48339067-48339086 | MS.gene97479:intron | 20.0% |
| ! | AAAGCTAAAACAAGTTCAAA+TGG | + | chr7.4:48338902-48338921 | None:intergenic | 25.0% |
| ! | AAGCTAAAACAAGTTCAAAT+GGG | + | chr7.4:48338901-48338920 | None:intergenic | 25.0% |
| ! | AATTAGCAGCTATTATATTC+TGG | - | chr7.4:48338339-48338358 | MS.gene97479:intron | 25.0% |
| ! | ACAGAATTATACTTATCCAA+TGG | + | chr7.4:48339046-48339065 | None:intergenic | 25.0% |
| ! | ACTGTAATGTTTAACAATGA+TGG | + | chr7.4:48339121-48339140 | None:intergenic | 25.0% |
| ! | AGAAACATTGACAATTTAAC+AGG | - | chr7.4:48338228-48338247 | MS.gene97479:intron | 25.0% |
| ! | ATATATTTGCATGATTTCTG+TGG | - | chr7.4:48338295-48338314 | MS.gene97479:intron | 25.0% |
| ! | ATCATTGTTAAACATTACAG+TGG | - | chr7.4:48339120-48339139 | MS.gene97479:intron | 25.0% |
| ! | CAATGAGAAATTCACATTTA+AGG | - | chr7.4:48337995-48338014 | MS.gene97479:CDS | 25.0% |
| ! | CCATTAGCTATAATTTATCT+AGG | + | chr7.4:48338609-48338628 | None:intergenic | 25.0% |
| ! | CCTAGATAAATTATAGCTAA+TGG | - | chr7.4:48338606-48338625 | MS.gene97479:intron | 25.0% |
| ! | GAATTTCTCATTGATAAGTA+GGG | + | chr7.4:48337988-48338007 | None:intergenic | 25.0% |
| ! | TACTATTTCCAAAGGTAAAT+TGG | - | chr7.4:48339236-48339255 | MS.gene97479:CDS | 25.0% |
| ! | TATAATTTATCTAGGTGAGT+TGG | + | chr7.4:48338601-48338620 | None:intergenic | 25.0% |
| ! | TGAATTTCTCATTGATAAGT+AGG | + | chr7.4:48337989-48338008 | None:intergenic | 25.0% |
| ! | TTTCATGTAACATGTTGTAT+AGG | - | chr7.4:48338559-48338578 | MS.gene97479:intron | 25.0% |
| !!! | TTGAACTTGTTTTAGCTTTT+AGG | - | chr7.4:48338903-48338922 | MS.gene97479:intron | 25.0% |
| AAACTGCTTATACATGGAAT+AGG | - | chr7.4:48338134-48338153 | MS.gene97479:intron | 30.0% | |
| AACCTTAATAAGCAGAACTT+TGG | + | chr7.4:48338799-48338818 | None:intergenic | 30.0% | |
| ATGGTAACTTTGTATATCAG+AGG | - | chr7.4:48338873-48338892 | MS.gene97479:intron | 30.0% | |
| CAACTCAAGATCATAATAGA+AGG | + | chr7.4:48338726-48338745 | None:intergenic | 30.0% | |
| GACAATATGTCTTTCTTCTT+GGG | - | chr7.4:48338250-48338269 | MS.gene97479:intron | 30.0% | |
| GCAATACTAGAAAATAGTGA+CGG | + | chr7.4:48337950-48337969 | None:intergenic | 30.0% | |
| TAGATCATATGACAAAGATC+AGG | - | chr7.4:48337917-48337936 | MS.gene97479:intron | 30.0% | |
| TCTTCTACTACTATTTCCAA+AGG | - | chr7.4:48339228-48339247 | MS.gene97479:CDS | 30.0% | |
| TGAAAATATTGCCTTGTAGT+TGG | - | chr7.4:48339321-48339340 | MS.gene97479:CDS | 30.0% | |
| TGAGAAATTCACATTTAAGG+AGG | - | chr7.4:48337998-48338017 | MS.gene97479:CDS | 30.0% | |
| TTTCTATTGTATGGTACATG+AGG | - | chr7.4:48337877-48337896 | MS.gene97479:intron | 30.0% | |
| ! | ATTCCATGTATAAGCAGTTT+TGG | + | chr7.4:48338134-48338153 | None:intergenic | 30.0% |
| ! | GAAGCTCATTTTCTATTGTA+TGG | - | chr7.4:48337868-48337887 | MS.gene97479:intron | 30.0% |
| ! | TTCCATGTATAAGCAGTTTT+GGG | + | chr7.4:48338133-48338152 | None:intergenic | 30.0% |
| ! | TTTATTTGTTGGAACGAAAC+TGG | - | chr7.4:48338752-48338771 | MS.gene97479:intron | 30.0% |
| ACTTATCCAATGGACAAAGT+GGG | + | chr7.4:48339036-48339055 | None:intergenic | 35.0% | |
| AGCACTATACATTCTCAACT+GGG | - | chr7.4:48338989-48339008 | MS.gene97479:CDS | 35.0% | |
| AGCCAAAGTTCTGCTTATTA+AGG | - | chr7.4:48338794-48338813 | MS.gene97479:intron | 35.0% | |
| ATAAAATGGACCTGACAAGT+AGG | + | chr7.4:48339262-48339281 | None:intergenic | 35.0% | |
| ATGATCTACGAACAATCTTG+TGG | + | chr7.4:48337905-48337924 | None:intergenic | 35.0% | |
| GGACAATATGTCTTTCTTCT+TGG | - | chr7.4:48338249-48338268 | MS.gene97479:intron | 35.0% | |
| GGCTTCAAGATCATAATAGA+AGG | + | chr7.4:48338778-48338797 | None:intergenic | 35.0% | |
| TACTTATCCAATGGACAAAG+TGG | + | chr7.4:48339037-48339056 | None:intergenic | 35.0% | |
| TATACATGGAATAGGTGATG+TGG | - | chr7.4:48338142-48338161 | MS.gene97479:intron | 35.0% | |
| TTGAAACTGATCAATGAGAC+TGG | - | chr7.4:48338700-48338719 | MS.gene97479:intron | 35.0% | |
| TTGGTTTATGCTCTTTAGAC+TGG | - | chr7.4:48339086-48339105 | MS.gene97479:intron | 35.0% | |
| TTTCAATGAAGCCAACAAAC+AGG | + | chr7.4:48338686-48338705 | None:intergenic | 35.0% | |
| ! | CATTACTTCTTTTGCAGCAT+GGG | - | chr7.4:48339169-48339188 | MS.gene97479:intron | 35.0% |
| ! | TACTAGAAAATAGTGACGGA+AGG | + | chr7.4:48337946-48337965 | None:intergenic | 35.0% |
| AATGGAAGGAAGTCAGAACA+AGG | + | chr7.4:48339153-48339172 | None:intergenic | 40.0% | |
| AGACCAACCTTCCAGTTATT+TGG | + | chr7.4:48338390-48338409 | None:intergenic | 40.0% | |
| AGTATTGCCCTGCTTATTGT+TGG | - | chr7.4:48337962-48337981 | MS.gene97479:intron | 40.0% | |
| CAAGTAGGCCAATTTACCTT+TGG | + | chr7.4:48339247-48339266 | None:intergenic | 40.0% | |
| CCATGCTGCAAAAGAAGTAA+TGG | + | chr7.4:48339171-48339190 | None:intergenic | 40.0% | |
| CTGATCAACAGCCAAATAAC+TGG | - | chr7.4:48338376-48338395 | MS.gene97479:intron | 40.0% | |
| CTTATCCAATGGACAAAGTG+GGG | + | chr7.4:48339035-48339054 | None:intergenic | 40.0% | |
| CTTTCTTCTTGGGTAAGCTA+TGG | - | chr7.4:48338260-48338279 | MS.gene97479:intron | 40.0% | |
| CTTTGTCTGTGAAATGCAGT+GGG | - | chr7.4:48338961-48338980 | MS.gene97479:CDS | 40.0% | |
| GAGCACTATACATTCTCAAC+TGG | - | chr7.4:48338988-48339007 | MS.gene97479:CDS | 40.0% | |
| GCTCAAAACTAAGACGAACA+AGG | + | chr7.4:48339298-48339317 | None:intergenic | 40.0% | |
| GTCCCAAAACTGCTTATACA+TGG | - | chr7.4:48338128-48338147 | MS.gene97479:intron | 40.0% | |
| TAGCTAATGGGGACAACAAA+AGG | - | chr7.4:48338619-48338638 | MS.gene97479:intron | 40.0% | |
| TCAACAGCCAAATAACTGGA+AGG | - | chr7.4:48338380-48338399 | MS.gene97479:intron | 40.0% | |
| TGGTTGTTCTTCCAACTACA+AGG | + | chr7.4:48339335-48339354 | None:intergenic | 40.0% | |
| ! | CCATTACTTCTTTTGCAGCA+TGG | - | chr7.4:48339168-48339187 | MS.gene97479:intron | 40.0% |
| ! | GCTGCAAAAGAAGTAATGGA+AGG | + | chr7.4:48339167-48339186 | None:intergenic | 40.0% |
| ! | GTGAGTTGGATTGACAACTT+TGG | + | chr7.4:48338587-48338606 | None:intergenic | 40.0% |
| ! | GTGGACATTTTCCCTGTATT+TGG | - | chr7.4:48338161-48338180 | MS.gene97479:intron | 40.0% |
| AAGTAGGGCCAACAATAAGC+AGG | + | chr7.4:48337973-48337992 | None:intergenic | 45.0% | |
| AGTAGGGCCAACAATAAGCA+GGG | + | chr7.4:48337972-48337991 | None:intergenic | 45.0% | |
| ATGCTGGCAAATGAAGCTTC+TGG | + | chr7.4:48339355-48339374 | None:intergenic | 45.0% | |
| CAGCCAAATAACTGGAAGGT+TGG | - | chr7.4:48338384-48338403 | MS.gene97479:intron | 45.0% | |
| CAGTACCAGTTGAGGAAGTA+TGG | + | chr7.4:48338196-48338215 | None:intergenic | 45.0% | |
| CTTTGTAGCAGTACCAGTTG+AGG | + | chr7.4:48338204-48338223 | None:intergenic | 45.0% | |
| GCATAGAACGAGCTTAGTAG+TGG | - | chr7.4:48338428-48338447 | MS.gene97479:intron | 45.0% | |
| GCTTTGTCTGTGAAATGCAG+TGG | - | chr7.4:48338960-48338979 | MS.gene97479:CDS | 45.0% | |
| GGCAACAGCTTCCAAATACA+GGG | + | chr7.4:48338175-48338194 | None:intergenic | 45.0% | |
| TGGCAACAGCTTCCAAATAC+AGG | + | chr7.4:48338176-48338195 | None:intergenic | 45.0% | |
| TGTTGCCATACTTCCTCAAC+TGG | - | chr7.4:48338188-48338207 | MS.gene97479:CDS | 45.0% | |
| ! | CTTTTGCAGCATGGGTTTCT+GGG | - | chr7.4:48339177-48339196 | MS.gene97479:intron | 45.0% |
| ! | GGTAAATTGGCCTACTTGTC+AGG | - | chr7.4:48339249-48339268 | MS.gene97479:CDS | 45.0% |
| ! | TCTTTTGCAGCATGGGTTTC+TGG | - | chr7.4:48339176-48339195 | MS.gene97479:intron | 45.0% |
| !! | TTAGTTTGCAGTAGTGCTCG+TGG | - | chr7.4:48338655-48338674 | MS.gene97479:intron | 45.0% |
| TCGTGGACAAGCCTGTTTGT+TGG | - | chr7.4:48338672-48338691 | MS.gene97479:intron | 50.0% | |
| CCAATGGACAAAGTGGGGCT+CGG | + | chr7.4:48339030-48339049 | None:intergenic | 55.0% | |
| CCGAGCCCCACTTTGTCCAT+TGG | - | chr7.4:48339027-48339046 | MS.gene97479:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 48337849 | 48339376 | 48337849 | ID=MS.gene97479 |
| chr7.4 | mRNA | 48337849 | 48339376 | 48337849 | ID=MS.gene97479.t1;Parent=MS.gene97479 |
| chr7.4 | exon | 48339206 | 48339376 | 48339206 | ID=MS.gene97479.t1.exon1;Parent=MS.gene97479.t1 |
| chr7.4 | CDS | 48339206 | 48339376 | 48339206 | ID=cds.MS.gene97479.t1;Parent=MS.gene97479.t1 |
| chr7.4 | exon | 48338954 | 48339069 | 48338954 | ID=MS.gene97479.t1.exon2;Parent=MS.gene97479.t1 |
| chr7.4 | CDS | 48338954 | 48339069 | 48338954 | ID=cds.MS.gene97479.t1;Parent=MS.gene97479.t1 |
| chr7.4 | exon | 48338172 | 48338245 | 48338172 | ID=MS.gene97479.t1.exon3;Parent=MS.gene97479.t1 |
| chr7.4 | CDS | 48338172 | 48338245 | 48338172 | ID=cds.MS.gene97479.t1;Parent=MS.gene97479.t1 |
| chr7.4 | exon | 48337976 | 48338039 | 48337976 | ID=MS.gene97479.t1.exon4;Parent=MS.gene97479.t1 |
| chr7.4 | CDS | 48337976 | 48338039 | 48337976 | ID=cds.MS.gene97479.t1;Parent=MS.gene97479.t1 |
| chr7.4 | exon | 48337849 | 48337885 | 48337849 | ID=MS.gene97479.t1.exon5;Parent=MS.gene97479.t1 |
| chr7.4 | CDS | 48337849 | 48337885 | 48337849 | ID=cds.MS.gene97479.t1;Parent=MS.gene97479.t1 |
| Gene Sequence |
| Protein sequence |
