Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98839.t1 | RHN52802.1 | 97.8 | 319 | 6 | 1 | 14 | 331 | 208 | 526 | 1.30E-173 | 619 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98839.t1 | A0A396HHI6 | 97.8 | 319 | 6 | 1 | 14 | 331 | 208 | 526 | 9.2e-174 | 619.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene98839 | 0.854163 | 1.48E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene98839 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene04918 | MS.gene98839 | 0.811805 | 5.83E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene98839 | 0.847329 | 1.24E-59 | -1.69E-46 |
| MS.gene049499 | MS.gene98839 | 0.811331 | 7.38E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene98839 | 0.8261 | 3.27E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene98839 | 0.815933 | 7.17E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene98839 | 0.822949 | 1.80E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene98839 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene98839 | 0.80194 | 7.10E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene98839 | 0.818046 | 2.40E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene98839 | 0.835294 | 1.82E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene98839 | 0.854906 | 9.01E-62 | -1.69E-46 |
| MS.gene052516 | MS.gene98839 | 0.821317 | 4.31E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene98839 | 0.816575 | 5.15E-52 | -1.69E-46 |
| MS.gene052582 | MS.gene98839 | 0.803307 | 3.71E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene98839 | 0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene98839 | 0.826653 | 2.41E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene98839 | 0.85025 | 1.92E-60 | -1.69E-46 |
| MS.gene053296 | MS.gene98839 | 0.81079 | 9.68E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene98839 | 0.802268 | 6.08E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene98839 | 0.821173 | 4.65E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene98839 | 0.914609 | 1.57E-84 | -1.69E-46 |
| MS.gene054651 | MS.gene98839 | 0.839767 | 1.30E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene98839 | 0.841644 | 4.19E-58 | -1.69E-46 |
| MS.gene054991 | MS.gene98839 | 0.800248 | 1.58E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene98839 | 0.815032 | 1.14E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene98839 | 0.807236 | 5.58E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene98839 | 0.825832 | 3.78E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene98839 | 0.802294 | 6.01E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene98839 | 0.804575 | 2.02E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene98839 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene98839 | 0.804408 | 2.19E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene98839 | 0.868213 | 7.72E-66 | -1.69E-46 |
| MS.gene057102 | MS.gene98839 | 0.807686 | 4.48E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene98839 | 0.827343 | 1.65E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene98839 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene98839 | 0.804924 | 1.71E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene98839 | 0.807841 | 4.15E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene98839 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene98839 | 0.80722 | 5.62E-50 | -1.69E-46 |
| MS.gene05897 | MS.gene98839 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene98839 | 0.825265 | 5.15E-54 | -1.69E-46 |
| MS.gene059625 | MS.gene98839 | 0.815803 | 7.67E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene98839 | 0.80474 | 1.87E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene98839 | 0.80781 | 4.21E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene98839 | 0.82481 | 6.60E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene98839 | 0.825545 | 4.42E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene98839 | 0.808114 | 3.63E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98839.t1 | MTR_6g084440 | 98.095 | 315 | 5 | 1 | 15 | 328 | 209 | 523 | 0.0 | 644 |
| MS.gene98839.t1 | MTR_6g084440 | 97.460 | 315 | 5 | 2 | 15 | 328 | 209 | 521 | 0.0 | 636 |
| MS.gene98839.t1 | MTR_8g104270 | 64.392 | 337 | 96 | 7 | 3 | 328 | 158 | 481 | 2.52e-130 | 383 |
| MS.gene98839.t1 | MTR_4g005350 | 41.346 | 208 | 105 | 6 | 105 | 297 | 115 | 320 | 2.75e-38 | 141 |
| MS.gene98839.t1 | MTR_7g010160 | 29.365 | 252 | 149 | 8 | 96 | 325 | 412 | 656 | 4.37e-19 | 88.6 |
| MS.gene98839.t1 | MTR_5g040600 | 28.755 | 233 | 133 | 8 | 110 | 322 | 597 | 816 | 1.61e-18 | 87.0 |
| MS.gene98839.t1 | MTR_8g467380 | 30.435 | 161 | 105 | 3 | 170 | 325 | 587 | 745 | 5.37e-13 | 70.1 |
| MS.gene98839.t1 | MTR_8g467390 | 26.047 | 215 | 130 | 7 | 106 | 296 | 126 | 335 | 1.87e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98839.t1 | AT1G73850 | 63.082 | 279 | 78 | 6 | 64 | 322 | 273 | 546 | 3.08e-112 | 339 |
| MS.gene98839.t1 | AT1G73850 | 63.082 | 279 | 78 | 6 | 64 | 322 | 273 | 546 | 3.08e-112 | 339 |
| MS.gene98839.t1 | AT3G20260 | 40.566 | 212 | 106 | 7 | 105 | 298 | 117 | 326 | 1.03e-33 | 129 |
| MS.gene98839.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 170 | 295 | 349 | 481 | 3.88e-17 | 82.8 |
| MS.gene98839.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 170 | 295 | 349 | 481 | 3.95e-17 | 82.8 |
| MS.gene98839.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 170 | 295 | 349 | 481 | 3.95e-17 | 82.8 |
| MS.gene98839.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 170 | 295 | 349 | 481 | 3.95e-17 | 82.8 |
| MS.gene98839.t1 | AT5G39785 | 39.259 | 135 | 71 | 4 | 170 | 295 | 349 | 481 | 4.39e-17 | 82.4 |
| MS.gene98839.t1 | AT1G69610 | 28.641 | 206 | 131 | 6 | 106 | 297 | 270 | 473 | 1.89e-15 | 77.4 |
| MS.gene98839.t1 | AT1G69610 | 28.641 | 206 | 131 | 6 | 106 | 297 | 314 | 517 | 2.28e-15 | 77.4 |
| MS.gene98839.t1 | AT1G69610 | 28.641 | 206 | 131 | 6 | 106 | 297 | 315 | 518 | 2.46e-15 | 77.4 |
Find 53 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCGTAAGATTCCCATTT+TGG | 0.147178 | 6.1:-73975961 | None:intergenic |
| TCAATTATTTGTAGAGATTC+TGG | 0.189000 | 6.1:+73975907 | MS.gene98839:CDS |
| TAACATGGGAAGCACTTAAT+TGG | 0.198782 | 6.1:+73976875 | MS.gene98839:CDS |
| GTAATTGTACCTCGATATTC+AGG | 0.210210 | 6.1:-73977087 | None:intergenic |
| CAAGAAGAAGTTGTCCAAAA+TGG | 0.218903 | 6.1:+73975947 | MS.gene98839:CDS |
| AGCTTCATTTCTTGTGATAA+TGG | 0.291025 | 6.1:+73977871 | MS.gene98839:CDS |
| GATGATCAGAAGGAGAATAT+TGG | 0.307291 | 6.1:+73977827 | MS.gene98839:CDS |
| GTAGCTCCAAGGTCAATTTC+AGG | 0.324497 | 6.1:+73976751 | MS.gene98839:CDS |
| CACTATTGGCTCAACATCTA+AGG | 0.332326 | 6.1:+73975864 | MS.gene98839:CDS |
| GCAGCCTCCAATTCACAATA+TGG | 0.342594 | 6.1:-73976832 | None:intergenic |
| ATGATCAGAAGGAGAATATT+GGG | 0.345161 | 6.1:+73977828 | MS.gene98839:CDS |
| GAGAATGAACCTTATGAGTT+TGG | 0.345523 | 6.1:+73977006 | MS.gene98839:CDS |
| GGATTGTGACTTATATCTTC+TGG | 0.349354 | 6.1:-73976811 | None:intergenic |
| AACTGTTGCGCAATTGTTGC+TGG | 0.354425 | 6.1:-73976949 | None:intergenic |
| ATCAACATTTGAAGCTCGTT+TGG | 0.363092 | 6.1:-73976917 | None:intergenic |
| GCACAAAAGCTTCATGAAAC+TGG | 0.382594 | 6.1:+73976030 | MS.gene98839:CDS |
| AAAGATGATGAAGAGATATA+TGG | 0.394408 | 6.1:+73975832 | MS.gene98839:CDS |
| TCACAATCCATATTGTGAAT+TGG | 0.401197 | 6.1:+73976825 | MS.gene98839:CDS |
| TGTGATTGGTCCTACACAAT+TGG | 0.408052 | 6.1:+73975780 | MS.gene98839:CDS |
| AAGAAATGTCATTTCTAGAA+AGG | 0.415445 | 6.1:+73976001 | MS.gene98839:CDS |
| TATGGTGATACAACCACTAT+TGG | 0.420091 | 6.1:+73975850 | MS.gene98839:CDS |
| TTTAAAAGACGGATTAATGT+TGG | 0.441489 | 6.1:-73977998 | None:intergenic |
| TTTAAAGAAAGTTAATCAAA+AGG | 0.445739 | 6.1:+73978015 | MS.gene98839:CDS |
| AAGAAGAAGTTGTCCAAAAT+GGG | 0.445917 | 6.1:+73975948 | MS.gene98839:CDS |
| TTTCTTGTGATAATGGAAGA+TGG | 0.449843 | 6.1:+73977878 | MS.gene98839:CDS |
| AAAAGCTTAGTAGAAAACTA+TGG | 0.452269 | 6.1:+73973889 | MS.gene98839:CDS |
| CTTAGATGTTGAGCCAATAG+TGG | 0.464943 | 6.1:-73975863 | None:intergenic |
| TCAGGGACTAGGAGCAACTT+TGG | 0.470020 | 6.1:-73977069 | None:intergenic |
| CTCATTCTAGCATAAATCTC+TGG | 0.472752 | 6.1:-73977036 | None:intergenic |
| TTATTTCTCTCCAATTGTGT+AGG | 0.473744 | 6.1:-73975790 | None:intergenic |
| CATCTAAGGACTCTTCTGAT+TGG | 0.477906 | 6.1:+73975878 | MS.gene98839:CDS |
| TTGCACAAATTTGCTTAACA+TGG | 0.498853 | 6.1:+73976860 | MS.gene98839:CDS |
| TTATGCTAGAATGAGGCATA+TGG | 0.512293 | 6.1:+73977044 | MS.gene98839:CDS |
| GGTCTCCTACCAAACTCATA+AGG | 0.512862 | 6.1:-73977015 | None:intergenic |
| GATTAACTTTCTTTAAAAGA+CGG | 0.520863 | 6.1:-73978009 | None:intergenic |
| CAATCCATATTGTGAATTGG+AGG | 0.524173 | 6.1:+73976828 | MS.gene98839:CDS |
| ATTCTCCCTGAAATTGACCT+TGG | 0.525426 | 6.1:-73976757 | None:intergenic |
| TCGTAGAAATCAAAGAGGCT+TGG | 0.527566 | 6.1:+73977970 | MS.gene98839:CDS |
| ATGAACCTTATGAGTTTGGT+AGG | 0.530017 | 6.1:+73977010 | MS.gene98839:CDS |
| CGAGCTTCAAATGTTGATGT+TGG | 0.530856 | 6.1:+73976922 | MS.gene98839:CDS |
| TAGCTCCAAGGTCAATTTCA+GGG | 0.532390 | 6.1:+73976752 | MS.gene98839:CDS |
| AGAATCAGATGATGATCAGA+AGG | 0.565291 | 6.1:+73977817 | MS.gene98839:intron |
| CAGAGATTTATGCTAGAATG+AGG | 0.571884 | 6.1:+73977037 | MS.gene98839:CDS |
| AACATTCATGAATTTCCTCA+AGG | 0.579977 | 6.1:+73977907 | MS.gene98839:CDS |
| TAATTGTACCTCGATATTCA+GGG | 0.581514 | 6.1:-73977086 | None:intergenic |
| TGCACAAATTTGCTTAACAT+GGG | 0.586140 | 6.1:+73976861 | MS.gene98839:CDS |
| GTTTCTCTTTATCAGCCTTG+AGG | 0.587313 | 6.1:-73977922 | None:intergenic |
| TACCTCGATATTCAGGGACT+AGG | 0.588940 | 6.1:-73977080 | None:intergenic |
| TTCTACGAAAGTAAGATGCA+AGG | 0.609967 | 6.1:-73977955 | None:intergenic |
| TACTTTCGTAGAAATCAAAG+AGG | 0.610424 | 6.1:+73977965 | MS.gene98839:CDS |
| GATCTATCAAAGTAGCTCCA+AGG | 0.637964 | 6.1:+73976740 | MS.gene98839:CDS |
| CTCCTAGTCCCTGAATATCG+AGG | 0.670680 | 6.1:+73977078 | MS.gene98839:CDS |
| TAAGATGCAAGGATCTGACA+TGG | 0.678566 | 6.1:-73977944 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACATATTTAAGATAATTA+AGG | - | chr6.1:73974295-73974314 | None:intergenic | 10.0% |
| !!! | TCTTCAAATATATTTTTATT+TGG | + | chr6.1:73976429-73976448 | MS.gene98839:intron | 10.0% |
| !!! | TTATTTGAAATTTTAATAAG+TGG | - | chr6.1:73977370-73977389 | None:intergenic | 10.0% |
| !! | AAAACTATGGTAAAAAAAAT+TGG | + | chr6.1:73973902-73973921 | MS.gene98839:intron | 15.0% |
| !! | AAATATCAGAAAATTAAGAA+AGG | - | chr6.1:73976067-73976086 | None:intergenic | 15.0% |
| !! | AACAAATATATATCTATACA+TGG | + | chr6.1:73974107-73974126 | MS.gene98839:intron | 15.0% |
| !! | ACAAATATATATCTATACAT+GGG | + | chr6.1:73974108-73974127 | MS.gene98839:intron | 15.0% |
| !! | AGCATTATTAAAAAATTTGT+AGG | + | chr6.1:73977581-73977600 | MS.gene98839:intron | 15.0% |
| !! | CAAGTTCTATTAAAATATTA+TGG | + | chr6.1:73977141-73977160 | MS.gene98839:intron | 15.0% |
| !! | CATTATTAAAAAATTTGTAG+GGG | + | chr6.1:73977583-73977602 | MS.gene98839:intron | 15.0% |
| !! | GAAGAAATAATATTATAATG+TGG | - | chr6.1:73976414-73976433 | None:intergenic | 15.0% |
| !! | GCATTATTAAAAAATTTGTA+GGG | + | chr6.1:73977582-73977601 | MS.gene98839:intron | 15.0% |
| !! | TTATAATTGGAATATGATAA+GGG | + | chr6.1:73974449-73974468 | MS.gene98839:intron | 15.0% |
| !! | TTTAAAGAAAGTTAATCAAA+AGG | + | chr6.1:73978015-73978034 | MS.gene98839:CDS | 15.0% |
| !!! | CATAATATTTTAATAGAACT+TGG | - | chr6.1:73977143-73977162 | None:intergenic | 15.0% |
| !! | AAAAATTGTAACTAAGTAGT+TGG | + | chr6.1:73976526-73976545 | MS.gene98839:intron | 20.0% |
| !! | AAAAGTGAAAAACAATTAGA+AGG | + | chr6.1:73974474-73974493 | MS.gene98839:intron | 20.0% |
| !! | ATTGAAAAACTATTTAACTG+TGG | - | chr6.1:73977494-73977513 | None:intergenic | 20.0% |
| !! | CTAAATTATGACCTTAATTA+AGG | + | chr6.1:73974250-73974269 | MS.gene98839:intron | 20.0% |
| !! | CTTATAATTGGAATATGATA+AGG | + | chr6.1:73974448-73974467 | MS.gene98839:intron | 20.0% |
| !! | CTTATCATATTCCAATTATA+AGG | - | chr6.1:73974450-73974469 | None:intergenic | 20.0% |
| !! | GCAGAAAAATATATTGATAT+TGG | + | chr6.1:73975700-73975719 | MS.gene98839:intron | 20.0% |
| !! | TAGATATATATTTGTTTGCA+TGG | - | chr6.1:73974103-73974122 | None:intergenic | 20.0% |
| !!! | ATATTTTAATAGAACTTGGA+AGG | - | chr6.1:73977139-73977158 | None:intergenic | 20.0% |
| !!! | GATTAACTTTCTTTAAAAGA+CGG | - | chr6.1:73978012-73978031 | None:intergenic | 20.0% |
| !!! | GTTAAATAGTTTTTCAATTG+TGG | + | chr6.1:73977496-73977515 | MS.gene98839:intron | 20.0% |
| !!! | TAGATTTTATTCTAAGAGAA+GGG | + | chr6.1:73974357-73974376 | MS.gene98839:intron | 20.0% |
| !!! | TTTCTAGATATGTGATTTTT+TGG | + | chr6.1:73977433-73977452 | MS.gene98839:intron | 20.0% |
| ! | AAAAGCTTAGTAGAAAACTA+TGG | + | chr6.1:73973889-73973908 | MS.gene98839:CDS | 25.0% |
| ! | AAAGATGATGAAGAGATATA+TGG | + | chr6.1:73975832-73975851 | MS.gene98839:CDS | 25.0% |
| ! | AATATTATTCCCAACATACA+AGG | + | chr6.1:73974330-73974349 | MS.gene98839:intron | 25.0% |
| ! | AATGAACTAAACCTCTTTAA+AGG | + | chr6.1:73973969-73973988 | MS.gene98839:intron | 25.0% |
| ! | ATAGTAACAATAAGTCTCAA+AGG | + | chr6.1:73975070-73975089 | MS.gene98839:intron | 25.0% |
| ! | ATATCTAGAAATTATGTCCT+TGG | - | chr6.1:73977424-73977443 | None:intergenic | 25.0% |
| ! | ATATGTCCTAGAAATTTATG+TGG | - | chr6.1:73974398-73974417 | None:intergenic | 25.0% |
| ! | ATTATGTTTGGTATTTGTGT+CGG | + | chr6.1:73975610-73975629 | MS.gene98839:intron | 25.0% |
| ! | ATTCTATTCCAATTGAAAAG+AGG | + | chr6.1:73975301-73975320 | MS.gene98839:intron | 25.0% |
| ! | CTAACGTTCAAGATATATTA+TGG | + | chr6.1:73976159-73976178 | MS.gene98839:intron | 25.0% |
| ! | GTAGCAATAATAATAACCTT+TGG | - | chr6.1:73974819-73974838 | None:intergenic | 25.0% |
| ! | GTCAACATTGTACAAAAAAT+TGG | - | chr6.1:73974518-73974537 | None:intergenic | 25.0% |
| ! | TAATAATGCTTCACACTAAT+GGG | - | chr6.1:73977571-73977590 | None:intergenic | 25.0% |
| ! | TATGTGAGATATATGATATG+TGG | + | chr6.1:73974158-73974177 | MS.gene98839:intron | 25.0% |
| ! | TCAATTATTTGTAGAGATTC+TGG | + | chr6.1:73975907-73975926 | MS.gene98839:CDS | 25.0% |
| ! | TTAATAATGCTTCACACTAA+TGG | - | chr6.1:73977572-73977591 | None:intergenic | 25.0% |
| ! | TTAGTAGCTGATATAGTTTA+TGG | + | chr6.1:73975024-73975043 | MS.gene98839:intron | 25.0% |
| ! | TTGTGTAAACACCTTATAAT+TGG | + | chr6.1:73974436-73974455 | MS.gene98839:intron | 25.0% |
| !! | AAGAAATGTCATTTCTAGAA+AGG | + | chr6.1:73976001-73976020 | MS.gene98839:CDS | 25.0% |
| !! | AATGAAGCTGATGATATTTT+AGG | - | chr6.1:73977860-73977879 | None:intergenic | 25.0% |
| !! | AATTATAAGGTGTTTACACA+AGG | - | chr6.1:73974437-73974456 | None:intergenic | 25.0% |
| !! | ATTATAAGGTGTTTACACAA+GGG | - | chr6.1:73974436-73974455 | None:intergenic | 25.0% |
| !! | ATTTAAGATAATTAAGGCCA+TGG | - | chr6.1:73974289-73974308 | None:intergenic | 25.0% |
| !! | TAGGATTTGTTCCTTAATTA+AGG | - | chr6.1:73974264-73974283 | None:intergenic | 25.0% |
| !! | TCTACTAAGCTTTTTATCAA+AGG | - | chr6.1:73973883-73973902 | None:intergenic | 25.0% |
| !! | TCTTTTATAAATCATGACCA+AGG | + | chr6.1:73977404-73977423 | MS.gene98839:intron | 25.0% |
| !!! | CTAGATTTTATTCTAAGAGA+AGG | + | chr6.1:73974356-73974375 | MS.gene98839:intron | 25.0% |
| !!! | GATTTTTTGGAGGAAAAAAT+AGG | + | chr6.1:73977446-73977465 | MS.gene98839:intron | 25.0% |
| !!! | TTTAAAAGACGGATTAATGT+TGG | - | chr6.1:73978001-73978020 | None:intergenic | 25.0% |
| AACATTCATGAATTTCCTCA+AGG | + | chr6.1:73977907-73977926 | MS.gene98839:CDS | 30.0% | |
| AAGAAGAAGTTGTCCAAAAT+GGG | + | chr6.1:73975948-73975967 | MS.gene98839:CDS | 30.0% | |
| AATAATGCTTCACACTAATG+GGG | - | chr6.1:73977570-73977589 | None:intergenic | 30.0% | |
| AATGAGAAAAGAAACTAGAG+AGG | - | chr6.1:73974846-73974865 | None:intergenic | 30.0% | |
| ACATAAATGAAATGGACACA+TGG | - | chr6.1:73975571-73975590 | None:intergenic | 30.0% | |
| AGCTTCATTTCTTGTGATAA+TGG | + | chr6.1:73977871-73977890 | MS.gene98839:CDS | 30.0% | |
| AGTAGCTACTAATGAAGTTA+AGG | - | chr6.1:73974789-73974808 | None:intergenic | 30.0% | |
| ATGATCAGAAGGAGAATATT+GGG | + | chr6.1:73977828-73977847 | MS.gene98839:CDS | 30.0% | |
| ATTATATATTGCCAACCCAT+TGG | + | chr6.1:73977527-73977546 | MS.gene98839:intron | 30.0% | |
| CACTAGACACATAAATGAAA+TGG | - | chr6.1:73975579-73975598 | None:intergenic | 30.0% | |
| GTTTCATCTAGTAACCTTAT+TGG | - | chr6.1:73973995-73974014 | None:intergenic | 30.0% | |
| TAAGGTTACTAGATGAAACA+AGG | + | chr6.1:73973996-73974015 | MS.gene98839:intron | 30.0% | |
| TAATTGTACCTCGATATTCA+GGG | - | chr6.1:73977089-73977108 | None:intergenic | 30.0% | |
| TACAAACTTTCAGTTGAAGT+TGG | - | chr6.1:73975186-73975205 | None:intergenic | 30.0% | |
| TACTTTCGTAGAAATCAAAG+AGG | + | chr6.1:73977965-73977984 | MS.gene98839:CDS | 30.0% | |
| TAGATTGACGAATACATGTT+TGG | - | chr6.1:73974196-73974215 | None:intergenic | 30.0% | |
| TCACAATCCATATTGTGAAT+TGG | + | chr6.1:73976825-73976844 | MS.gene98839:CDS | 30.0% | |
| TTGAAGTAGAAAAGAGAAAG+AGG | - | chr6.1:73974750-73974769 | None:intergenic | 30.0% | |
| TTGTATAGGTTAACTGTGAT+AGG | - | chr6.1:73975339-73975358 | None:intergenic | 30.0% | |
| TTTGTACAATGTTGACACAT+AGG | + | chr6.1:73974522-73974541 | MS.gene98839:intron | 30.0% | |
| ! | GTCTCAAAATCTGAAACAAT+TGG | - | chr6.1:73975225-73975244 | None:intergenic | 30.0% |
| ! | TGCACAAATTTGCTTAACAT+GGG | + | chr6.1:73976861-73976880 | MS.gene98839:CDS | 30.0% |
| ! | TTATTTCTCTCCAATTGTGT+AGG | - | chr6.1:73975793-73975812 | None:intergenic | 30.0% |
| ! | TTGCACAAATTTGCTTAACA+TGG | + | chr6.1:73976860-73976879 | MS.gene98839:CDS | 30.0% |
| !! | CTAAGTCATCACTTTTGTAT+AGG | - | chr6.1:73975353-73975372 | None:intergenic | 30.0% |
| !! | TTTCTTGTGATAATGGAAGA+TGG | + | chr6.1:73977878-73977897 | MS.gene98839:CDS | 30.0% |
| !!! | ATCAAGTCTACTTTTTTTCC+TGG | + | chr6.1:73974583-73974602 | MS.gene98839:intron | 30.0% |
| !!! | CTAGATATGTGATTTTTTGG+AGG | + | chr6.1:73977436-73977455 | MS.gene98839:intron | 30.0% |
| AAGGAACAAATCCTAAACCA+TGG | + | chr6.1:73974269-73974288 | MS.gene98839:intron | 35.0% | |
| ACTTAAGAACGAAACTTCAG+GGG | + | chr6.1:73976571-73976590 | MS.gene98839:intron | 35.0% | |
| AGAATCAGATGATGATCAGA+AGG | + | chr6.1:73977817-73977836 | MS.gene98839:intron | 35.0% | |
| ATGAACCTTATGAGTTTGGT+AGG | + | chr6.1:73977010-73977029 | MS.gene98839:CDS | 35.0% | |
| CAAGAAGAAGTTGTCCAAAA+TGG | + | chr6.1:73975947-73975966 | MS.gene98839:CDS | 35.0% | |
| CAATCCATATTGTGAATTGG+AGG | + | chr6.1:73976828-73976847 | MS.gene98839:CDS | 35.0% | |
| CACTTAAGAACGAAACTTCA+GGG | + | chr6.1:73976570-73976589 | MS.gene98839:intron | 35.0% | |
| CAGAGATTTATGCTAGAATG+AGG | + | chr6.1:73977037-73977056 | MS.gene98839:CDS | 35.0% | |
| CTCATTCTAGCATAAATCTC+TGG | - | chr6.1:73977039-73977058 | None:intergenic | 35.0% | |
| GAGAATGAACCTTATGAGTT+TGG | + | chr6.1:73977006-73977025 | MS.gene98839:CDS | 35.0% | |
| GAGAGTGACAAAAACTATGA+TGG | + | chr6.1:73975375-73975394 | MS.gene98839:intron | 35.0% | |
| GATAATTAAGGCCATGGTTT+AGG | - | chr6.1:73974283-73974302 | None:intergenic | 35.0% | |
| GATGATCAGAAGGAGAATAT+TGG | + | chr6.1:73977827-73977846 | MS.gene98839:CDS | 35.0% | |
| GGATTGTGACTTATATCTTC+TGG | - | chr6.1:73976814-73976833 | None:intergenic | 35.0% | |
| GTAATTGTACCTCGATATTC+AGG | - | chr6.1:73977090-73977109 | None:intergenic | 35.0% | |
| GTAGCTACTCTTTATTCCAA+AGG | + | chr6.1:73974800-73974819 | MS.gene98839:intron | 35.0% | |
| GTAGCTGATATAGTTTATGG+TGG | + | chr6.1:73975027-73975046 | MS.gene98839:intron | 35.0% | |
| GTCCTAGAAATTTATGTGGT+GGG | - | chr6.1:73974394-73974413 | None:intergenic | 35.0% | |
| GTCTGTGTCAGTATTATGTT+TGG | + | chr6.1:73975598-73975617 | MS.gene98839:intron | 35.0% | |
| TATAGGTTAACTGTGATAGG+AGG | - | chr6.1:73975336-73975355 | None:intergenic | 35.0% | |
| TATGGTGATACAACCACTAT+TGG | + | chr6.1:73975850-73975869 | MS.gene98839:CDS | 35.0% | |
| TCACTTAAGAACGAAACTTC+AGG | + | chr6.1:73976569-73976588 | MS.gene98839:intron | 35.0% | |
| TGTCCTAGAAATTTATGTGG+TGG | - | chr6.1:73974395-73974414 | None:intergenic | 35.0% | |
| TGTTATGTTCGTGTCAGTAT+CGG | + | chr6.1:73975641-73975660 | MS.gene98839:intron | 35.0% | |
| TTAATAAGCTGAATCTCTCG+CGG | + | chr6.1:73976098-73976117 | MS.gene98839:intron | 35.0% | |
| TTATGCTAGAATGAGGCATA+TGG | + | chr6.1:73977044-73977063 | MS.gene98839:CDS | 35.0% | |
| TTCAACAACCGAAGTTTCAT+TGG | - | chr6.1:73976312-73976331 | None:intergenic | 35.0% | |
| TTCTACGAAAGTAAGATGCA+AGG | - | chr6.1:73977958-73977977 | None:intergenic | 35.0% | |
| TTGTCTCTCCAATGAAACTT+CGG | + | chr6.1:73976301-73976320 | MS.gene98839:intron | 35.0% | |
| ! | AACCTCTTTAAAGGCCAATA+AGG | + | chr6.1:73973978-73973997 | MS.gene98839:intron | 35.0% |
| ! | ATCAACATTTGAAGCTCGTT+TGG | - | chr6.1:73976920-73976939 | None:intergenic | 35.0% |
| ! | TGTCGACAAGTTGAACATTA+TGG | - | chr6.1:73976267-73976286 | None:intergenic | 35.0% |
| !! | AACCTTATTGGCCTTTAAAG+AGG | - | chr6.1:73973983-73974002 | None:intergenic | 35.0% |
| !! | AATCTAGTAGCCTTGTATGT+TGG | - | chr6.1:73974343-73974362 | None:intergenic | 35.0% |
| !! | AGAGCTTCTTCTTTAGAACA+TGG | - | chr6.1:73974682-73974701 | None:intergenic | 35.0% |
| !! | ATCTAGTAGCCTTGTATGTT+GGG | - | chr6.1:73974342-73974361 | None:intergenic | 35.0% |
| !! | TAACATGGGAAGCACTTAAT+TGG | + | chr6.1:73976875-73976894 | MS.gene98839:CDS | 35.0% |
| !!! | GATGAGAGTGTTTTTGTGAT+TGG | + | chr6.1:73975766-73975785 | MS.gene98839:CDS | 35.0% |
| !!! | TTGAGAGTGTTTTATCTCGA+CGG | + | chr6.1:73976344-73976363 | MS.gene98839:intron | 35.0% |
| ATTCTCCCTGAAATTGACCT+TGG | - | chr6.1:73976760-73976779 | None:intergenic | 40.0% | |
| CATCTAAGGACTCTTCTGAT+TGG | + | chr6.1:73975878-73975897 | MS.gene98839:CDS | 40.0% | |
| CGAGCTTCAAATGTTGATGT+TGG | + | chr6.1:73976922-73976941 | MS.gene98839:CDS | 40.0% | |
| CTCCCACCACATAAATTTCT+AGG | + | chr6.1:73974389-73974408 | MS.gene98839:intron | 40.0% | |
| CTTAGATGTTGAGCCAATAG+TGG | - | chr6.1:73975866-73975885 | None:intergenic | 40.0% | |
| GAGAATTTGACCAGAGATTG+AGG | - | chr6.1:73976124-73976143 | None:intergenic | 40.0% | |
| GATCTATCAAAGTAGCTCCA+AGG | + | chr6.1:73976740-73976759 | MS.gene98839:CDS | 40.0% | |
| GCACAAAAGCTTCATGAAAC+TGG | + | chr6.1:73976030-73976049 | MS.gene98839:CDS | 40.0% | |
| GTTTCTCTTTATCAGCCTTG+AGG | - | chr6.1:73977925-73977944 | None:intergenic | 40.0% | |
| TAAGATGCAAGGATCTGACA+TGG | - | chr6.1:73977947-73977966 | None:intergenic | 40.0% | |
| TAGCTCCAAGGTCAATTTCA+GGG | + | chr6.1:73976752-73976771 | MS.gene98839:CDS | 40.0% | |
| TCGTAGAAATCAAAGAGGCT+TGG | + | chr6.1:73977970-73977989 | MS.gene98839:CDS | 40.0% | |
| TCTTCAATGAAGCTATCTCG+AGG | - | chr6.1:73975141-73975160 | None:intergenic | 40.0% | |
| ! | ACTGCGTAAGATTCCCATTT+TGG | - | chr6.1:73975964-73975983 | None:intergenic | 40.0% |
| ! | ATATTGCCAACCCATTGGTT+AGG | + | chr6.1:73977532-73977551 | MS.gene98839:intron | 40.0% |
| ! | GAAGTGGTCCTCTTTTCAAT+TGG | - | chr6.1:73975312-73975331 | None:intergenic | 40.0% |
| ! | GCTTAGTGGATGAAGTACTT+TGG | + | chr6.1:73974615-73974634 | MS.gene98839:intron | 40.0% |
| ! | TATTGCCAACCCATTGGTTA+GGG | + | chr6.1:73977533-73977552 | MS.gene98839:intron | 40.0% |
| ! | TGTGATTGGTCCTACACAAT+TGG | + | chr6.1:73975780-73975799 | MS.gene98839:CDS | 40.0% |
| ! | TTAATCCAACGACCGAGTTT+TGG | + | chr6.1:73976189-73976208 | MS.gene98839:intron | 40.0% |
| !! | CACTATTGGCTCAACATCTA+AGG | + | chr6.1:73975864-73975883 | MS.gene98839:CDS | 40.0% |
| AACTGTGATAGGAGGAGAAG+TGG | - | chr6.1:73975328-73975347 | None:intergenic | 45.0% | |
| AACTGTTGCGCAATTGTTGC+TGG | - | chr6.1:73976952-73976971 | None:intergenic | 45.0% | |
| ATGCATGGACCCTAACCAAT+GGG | - | chr6.1:73977545-73977564 | None:intergenic | 45.0% | |
| GCAGCCTCCAATTCACAATA+TGG | - | chr6.1:73976835-73976854 | None:intergenic | 45.0% | |
| GGTCTCCTACCAAACTCATA+AGG | - | chr6.1:73977018-73977037 | None:intergenic | 45.0% | |
| GTAGCTCCAAGGTCAATTTC+AGG | + | chr6.1:73976751-73976770 | MS.gene98839:CDS | 45.0% | |
| TACCTCGATATTCAGGGACT+AGG | - | chr6.1:73977083-73977102 | None:intergenic | 45.0% | |
| TATGCATGGACCCTAACCAA+TGG | - | chr6.1:73977546-73977565 | None:intergenic | 45.0% | |
| TATTGCCTCTCCAGTTTCTC+CGG | - | chr6.1:73976215-73976234 | None:intergenic | 45.0% | |
| !! | ACTAAGTAGTTGGCTTGAGC+TGG | + | chr6.1:73976536-73976555 | MS.gene98839:intron | 45.0% |
| !! | AAAAAAATTAGTTATTATTA+AGG | + | chr6.1:73976618-73976637 | MS.gene98839:intron | 5.0% |
| !!! | ATATGTTTAAAATAAATATT+AGG | + | chr6.1:73974307-73974326 | MS.gene98839:intron | 5.0% |
| ATGGACCCTAACCAATGGGT+TGG | - | chr6.1:73977541-73977560 | None:intergenic | 50.0% | |
| CACACTAATGGGGCTATGCA+TGG | - | chr6.1:73977560-73977579 | None:intergenic | 50.0% | |
| CAGTTTCTCCGGCCAAAACT+CGG | - | chr6.1:73976204-73976223 | None:intergenic | 50.0% | |
| CCACTAAGCAAAGCAACTCC+AGG | - | chr6.1:73974604-73974623 | None:intergenic | 50.0% | |
| CTCCTAGTCCCTGAATATCG+AGG | + | chr6.1:73977078-73977097 | MS.gene98839:CDS | 50.0% | |
| TCAGGGACTAGGAGCAACTT+TGG | - | chr6.1:73977072-73977091 | None:intergenic | 50.0% | |
| ! | CCTGGAGTTGCTTTGCTTAG+TGG | + | chr6.1:73974601-73974620 | MS.gene98839:intron | 50.0% |
| TTTGGCCGGAGAAACTGGAG+AGG | + | chr6.1:73976207-73976226 | MS.gene98839:intron | 55.0% | |
| !! | CGAGTTTTGGCCGGAGAAAC+TGG | + | chr6.1:73976202-73976221 | MS.gene98839:intron | 55.0% |
| !! | TCCAACGACCGAGTTTTGGC+CGG | + | chr6.1:73976193-73976212 | MS.gene98839:intron | 55.0% |
| TCCGGCCAAAACTCGGTCGT+TGG | - | chr6.1:73976197-73976216 | None:intergenic | 60.0% | |
| TCTCTCGCGGCCTCAATCTC+TGG | + | chr6.1:73976111-73976130 | MS.gene98839:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 73973862 | 73978048 | 73973862 | ID=MS.gene98839 |
| chr6.1 | mRNA | 73973862 | 73978048 | 73973862 | ID=MS.gene98839.t1;Parent=MS.gene98839 |
| chr6.1 | exon | 73973862 | 73973910 | 73973862 | ID=MS.gene98839.t1.exon1;Parent=MS.gene98839.t1 |
| chr6.1 | CDS | 73973862 | 73973910 | 73973862 | ID=cds.MS.gene98839.t1;Parent=MS.gene98839.t1 |
| chr6.1 | exon | 73975704 | 73976051 | 73975704 | ID=MS.gene98839.t1.exon2;Parent=MS.gene98839.t1 |
| chr6.1 | CDS | 73975704 | 73976051 | 73975704 | ID=cds.MS.gene98839.t1;Parent=MS.gene98839.t1 |
| chr6.1 | exon | 73976731 | 73977099 | 73976731 | ID=MS.gene98839.t1.exon3;Parent=MS.gene98839.t1 |
| chr6.1 | CDS | 73976731 | 73977099 | 73976731 | ID=cds.MS.gene98839.t1;Parent=MS.gene98839.t1 |
| chr6.1 | exon | 73977819 | 73978048 | 73977819 | ID=MS.gene98839.t1.exon4;Parent=MS.gene98839.t1 |
| chr6.1 | CDS | 73977819 | 73978048 | 73977819 | ID=cds.MS.gene98839.t1;Parent=MS.gene98839.t1 |
| Gene Sequence |
| Protein sequence |
