Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99664.t1 | XP_013469882.1 | 98.8 | 346 | 1 | 1 | 1 | 343 | 4 | 349 | 2.60E-185 | 657.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99664.t1 | O23787 | 81.4 | 345 | 60 | 2 | 3 | 343 | 12 | 356 | 1.7e-153 | 543.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99664.t1 | A0A072W0W5 | 98.8 | 346 | 1 | 1 | 1 | 343 | 4 | 349 | 1.8e-185 | 657.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene99664 | 0.822068 | 2.89E-53 | -1.69E-46 |
| MS.gene049373 | MS.gene99664 | 0.808941 | 2.42E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene99664 | 0.815252 | 1.02E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene99664 | 0.818142 | 2.29E-52 | -1.69E-46 |
| MS.gene05081 | MS.gene99664 | 0.817889 | 2.61E-52 | -1.69E-46 |
| MS.gene051244 | MS.gene99664 | 0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene99664 | 0.809303 | 2.02E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene99664 | 0.80725 | 5.54E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene99664 | 0.801659 | 8.11E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene99664 | 0.812255 | 4.65E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene99664 | 0.801596 | 8.36E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene99664 | 0.83212 | 1.13E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene99664 | 0.816587 | 5.12E-52 | -1.69E-46 |
| MS.gene054344 | MS.gene99664 | 0.842412 | 2.63E-58 | -1.69E-46 |
| MS.gene05470 | MS.gene99664 | 0.817356 | 3.44E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene99664 | 0.803365 | 3.61E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene99664 | 0.837398 | 5.32E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene99664 | 0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene055577 | MS.gene99664 | 0.800657 | 1.30E-48 | -1.69E-46 |
| MS.gene056633 | MS.gene99664 | 0.815417 | 9.35E-52 | -1.69E-46 |
| MS.gene057048 | MS.gene99664 | 0.805622 | 1.22E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene99664 | 0.843586 | 1.28E-58 | -1.69E-46 |
| MS.gene057332 | MS.gene99664 | 0.822889 | 1.86E-53 | -1.69E-46 |
| MS.gene057658 | MS.gene99664 | 0.824914 | 6.24E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene99664 | 0.804667 | 1.93E-49 | -1.69E-46 |
| MS.gene058746 | MS.gene99664 | 0.80901 | 2.34E-50 | -1.69E-46 |
| MS.gene058838 | MS.gene99664 | 0.801143 | 1.03E-48 | -1.69E-46 |
| MS.gene059023 | MS.gene99664 | 0.836448 | 9.31E-57 | -1.69E-46 |
| MS.gene059103 | MS.gene99664 | -0.815825 | 7.58E-52 | -1.69E-46 |
| MS.gene05914 | MS.gene99664 | 0.855143 | 7.69E-62 | -1.69E-46 |
| MS.gene059480 | MS.gene99664 | -0.817692 | 2.89E-52 | -1.69E-46 |
| MS.gene059512 | MS.gene99664 | 0.812055 | 5.14E-51 | -1.69E-46 |
| MS.gene059756 | MS.gene99664 | 0.810735 | 9.95E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene99664 | 0.811302 | 7.49E-51 | -1.69E-46 |
| MS.gene061231 | MS.gene99664 | 0.807108 | 5.94E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99664.t1 | MTR_1g105480 | 98.844 | 346 | 1 | 1 | 1 | 343 | 4 | 349 | 0.0 | 701 |
| MS.gene99664.t1 | MTR_4g081130 | 87.291 | 299 | 36 | 1 | 45 | 343 | 54 | 350 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99664.t1 | AT5G54770 | 79.130 | 345 | 68 | 2 | 2 | 343 | 6 | 349 | 0.0 | 559 |
Find 89 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTGAAGAATGAGGATT+TGG | 0.249214 | 1.4:+81096507 | None:intergenic |
| AAGTGAACCAGAGCTTATTT+TGG | 0.293889 | 1.4:-81094972 | MS.gene99664:CDS |
| ATTTGTAGGGTCCAACATTT+GGG | 0.296575 | 1.4:-81095084 | MS.gene99664:intron |
| GTTCCTGGTATGATTGTTAC+TGG | 0.328065 | 1.4:-81095728 | MS.gene99664:CDS |
| TGTGGACATGATGGTCCTTT+TGG | 0.329730 | 1.4:-81095866 | MS.gene99664:CDS |
| ATATCAAGTGCTTTCATTCC+AGG | 0.329942 | 1.4:+81095794 | None:intergenic |
| TATTTGTAGGGTCCAACATT+TGG | 0.333389 | 1.4:-81095085 | MS.gene99664:intron |
| CGTCATCGTCGGTGCGGGTT+CGG | 0.365933 | 1.4:-81096299 | MS.gene99664:CDS |
| CATCTCTTCCTCGACGAAAT+CGG | 0.369333 | 1.4:-81096139 | MS.gene99664:CDS |
| ATGATGGCGATACTGATGTT+TGG | 0.371853 | 1.4:+81096241 | None:intergenic |
| AGCTGCACATTTGGCATTGA+AGG | 0.371858 | 1.4:-81095038 | MS.gene99664:CDS |
| TTGCTGGTGTTGTTACAAAC+TGG | 0.379842 | 1.4:-81095967 | MS.gene99664:CDS |
| AGGACAGAAAGCTGCACATT+TGG | 0.390045 | 1.4:-81095047 | MS.gene99664:CDS |
| GGTATGATTGATCATGTTCC+TGG | 0.390693 | 1.4:-81095812 | MS.gene99664:CDS |
| TGTTGTTACAAACTGGGCTT+TGG | 0.398106 | 1.4:-81095960 | MS.gene99664:CDS |
| TTGCATGGATCCTAATGTTA+TGG | 0.401616 | 1.4:-81095912 | MS.gene99664:CDS |
| ACCTTAGCTTCCATAACATT+AGG | 0.407939 | 1.4:+81095902 | None:intergenic |
| CCATTGAAGAATGAGGATTT+GGG | 0.411622 | 1.4:+81096508 | None:intergenic |
| GGCAGGAACAATGCAATTGA+TGG | 0.414535 | 1.4:-81095010 | MS.gene99664:CDS |
| CATTTGGCATTGAAGGCATT+GGG | 0.419034 | 1.4:-81095031 | MS.gene99664:CDS |
| AGAGACGATGGATTCTTTGA+TGG | 0.420701 | 1.4:+81096378 | None:intergenic |
| TTTGGGGCAATGATGATATC+AGG | 0.421526 | 1.4:-81095067 | MS.gene99664:CDS |
| TGATGGCGATACTGATGTTT+GGG | 0.421589 | 1.4:+81096242 | None:intergenic |
| TTGAAGGTGTTTATATCGTA+GGG | 0.424530 | 1.4:+81096409 | None:intergenic |
| CTTACAAGGGAAGTTGTTCC+TGG | 0.428163 | 1.4:-81095743 | MS.gene99664:CDS |
| ACATTTGGCATTGAAGGCAT+TGG | 0.432123 | 1.4:-81095032 | MS.gene99664:CDS |
| GTTAAGAGGTTGAAGAGTAT+TGG | 0.445858 | 1.4:-81095833 | MS.gene99664:CDS |
| ATGCTATTGTTCGTCTTACA+AGG | 0.448172 | 1.4:-81095757 | MS.gene99664:CDS |
| CCCAAATCCTCATTCTTCAA+TGG | 0.449478 | 1.4:-81096508 | MS.gene99664:CDS |
| GTGAAGGAAAACAGAGTTGC+TGG | 0.450665 | 1.4:-81095983 | MS.gene99664:CDS |
| ATCGTCGGTGCGGGTTCGGC+CGG | 0.455969 | 1.4:-81096295 | MS.gene99664:CDS |
| TCAGCCCCGGCGGTGGTGCA+TGG | 0.460552 | 1.4:-81096207 | MS.gene99664:CDS |
| TTCGTAAGCGCATGAAAGAC+CGG | 0.467780 | 1.4:+81096276 | None:intergenic |
| ATCATCATTGCCCCAAATGT+TGG | 0.477979 | 1.4:+81095073 | None:intergenic |
| TTTGAAGGTGTTTATATCGT+AGG | 0.479263 | 1.4:+81096408 | None:intergenic |
| TTTGGCTTCTGCTGAATCAC+AGG | 0.481383 | 1.4:-81094954 | MS.gene99664:CDS |
| CCCGGCGGTGGTGCATGGCT+CGG | 0.482835 | 1.4:-81096202 | MS.gene99664:CDS |
| ACCGAGCCATGCACCACCGC+CGG | 0.484848 | 1.4:+81096201 | None:intergenic |
| TGGTCTTCCATTGAAGAATG+AGG | 0.487141 | 1.4:+81096501 | None:intergenic |
| TGCACCACCGCCGGGGCTGA+CGG | 0.487311 | 1.4:+81096210 | None:intergenic |
| GTGAGTTCTTGTGGACATGA+TGG | 0.494717 | 1.4:-81095875 | MS.gene99664:CDS |
| CCGAGCCATGCACCACCGCC+GGG | 0.497164 | 1.4:+81096202 | None:intergenic |
| TGGTATGATTGTTACTGGTA+TGG | 0.499259 | 1.4:-81095723 | MS.gene99664:CDS |
| TCCTAATGTTATGGAAGCTA+AGG | 0.499413 | 1.4:-81095903 | MS.gene99664:CDS |
| GACGTCGTCATCGTCGGTGC+GGG | 0.500597 | 1.4:-81096304 | MS.gene99664:CDS |
| TGCTGGTGTTGTTACAAACT+GGG | 0.501512 | 1.4:-81095966 | MS.gene99664:CDS |
| TTGGTGCTACTGGTGTTAAG+AGG | 0.502640 | 1.4:-81095847 | MS.gene99664:CDS |
| TGCAAGAAGCTTGCTCATGA+TGG | 0.508423 | 1.4:+81096054 | None:intergenic |
| GTGGAGGTGCGAGTAGCAAT+TGG | 0.509453 | 1.4:+81096481 | None:intergenic |
| CAATCCGTCAGCCCCGGCGG+TGG | 0.511119 | 1.4:-81096214 | MS.gene99664:CDS |
| TTTGATGGGTGCGAATTTGA+AGG | 0.512764 | 1.4:+81096393 | None:intergenic |
| TGGCATTGAAGGCATTGGGC+AGG | 0.520579 | 1.4:-81095027 | MS.gene99664:CDS |
| TCGTCGAGGAAGAGATGAGC+TGG | 0.521532 | 1.4:+81096145 | None:intergenic |
| GAAGGTGTTTATATCGTAGG+GGG | 0.526933 | 1.4:+81096411 | None:intergenic |
| ATCGAACAATCCGTCAGCCC+CGG | 0.527089 | 1.4:-81096220 | MS.gene99664:CDS |
| GAGACGATGGATTCTTTGAT+GGG | 0.528361 | 1.4:+81096379 | None:intergenic |
| TTTCAATGCTGTGGCTGCTG+AGG | 0.531952 | 1.4:-81096014 | MS.gene99664:CDS |
| CCATGCAAGATTGTGTATCA+TGG | 0.534946 | 1.4:+81095927 | None:intergenic |
| ATGGAAGTTGCTGAAATTGA+TGG | 0.535463 | 1.4:-81095704 | MS.gene99664:CDS |
| TGGTCAGCTCTTCTCCGCCA+TGG | 0.536416 | 1.4:-81096179 | MS.gene99664:CDS |
| CCATGATACACAATCTTGCA+TGG | 0.547093 | 1.4:-81095927 | MS.gene99664:CDS |
| GCAGAAGCCAAAATAAGCTC+TGG | 0.553231 | 1.4:+81094965 | None:intergenic |
| TTAACACCAGTAGCACCAAA+AGG | 0.554005 | 1.4:+81095851 | None:intergenic |
| AGTGAGAGATGCAGTGGCCA+TGG | 0.554618 | 1.4:+81096540 | None:intergenic |
| AAGGTTGTTGTGAGTTCTTG+TGG | 0.556055 | 1.4:-81095884 | MS.gene99664:CDS |
| GGTCATTTCACGAGAGACGA+TGG | 0.571046 | 1.4:+81096366 | None:intergenic |
| CATGTCTGTCATGTAACGAC+GGG | 0.572019 | 1.4:+81096345 | None:intergenic |
| GACGATGACGACGTCGGTGT+CGG | 0.577296 | 1.4:+81096312 | None:intergenic |
| AATTGATGGTGCCCCAAGAA+TGG | 0.586166 | 1.4:-81095690 | MS.gene99664:intron |
| TGAAGTAGTGAGAGATGCAG+TGG | 0.588227 | 1.4:+81096534 | None:intergenic |
| GACGACGTCGGTGTCGGCGT+AGG | 0.595030 | 1.4:+81096318 | None:intergenic |
| TGCTGAGGATTTGATTGTGA+AGG | 0.595705 | 1.4:-81095999 | MS.gene99664:CDS |
| CGACGTCGTCATCGTCGGTG+CGG | 0.596105 | 1.4:-81096305 | MS.gene99664:CDS |
| AGCTGGTTTGCGAACAACCA+TGG | 0.605597 | 1.4:+81096162 | None:intergenic |
| GCTGACGGATTGTTCGATGA+TGG | 0.605605 | 1.4:+81096225 | None:intergenic |
| GACACCGACGTCGTCATCGT+CGG | 0.606029 | 1.4:-81096310 | MS.gene99664:CDS |
| TGCTATTGTTCGTCTTACAA+GGG | 0.611924 | 1.4:-81095756 | MS.gene99664:CDS |
| AAGGTGTTTATATCGTAGGG+GGG | 0.613541 | 1.4:+81096412 | None:intergenic |
| GGCGGTGGTGCATGGCTCGG+TGG | 0.632291 | 1.4:-81096199 | MS.gene99664:CDS |
| CGAGCCATGCACCACCGCCG+GGG | 0.636862 | 1.4:+81096203 | None:intergenic |
| GGTGGATTTGATGATAGTGG+AGG | 0.638284 | 1.4:+81096465 | None:intergenic |
| TGAAGGTGTTTATATCGTAG+GGG | 0.653158 | 1.4:+81096410 | None:intergenic |
| TCATGTCTGTCATGTAACGA+CGG | 0.663647 | 1.4:+81096344 | None:intergenic |
| ATTCGACACCGATTTCGTCG+AGG | 0.679348 | 1.4:+81096131 | None:intergenic |
| ATACCAGTAACAATCATACC+AGG | 0.680671 | 1.4:+81095725 | None:intergenic |
| GAACAATCCGTCAGCCCCGG+CGG | 0.682954 | 1.4:-81096217 | MS.gene99664:CDS |
| TTTGTAGGGTCCAACATTTG+GGG | 0.712376 | 1.4:-81095083 | MS.gene99664:intron |
| CGCACCGACGATGACGACGT+CGG | 0.729324 | 1.4:+81096306 | None:intergenic |
| TGGTTTGCGAACAACCATGG+CGG | 0.745776 | 1.4:+81096165 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTATTTCAATTATTT+CGG | - | chr1.4:81095812-81095831 | MS.gene99664:CDS | 10.0% |
| !!! | ATCTACAATTTTTTGTTTAT+AGG | - | chr1.4:81096256-81096275 | MS.gene99664:CDS | 15.0% |
| !!! | ATTAAACTTTTTATCTAAAG+AGG | - | chr1.4:81096226-81096245 | MS.gene99664:CDS | 15.0% |
| !! | ACAAAAAATTGTAGATCATA+AGG | + | chr1.4:81096252-81096271 | None:intergenic | 20.0% |
| !! | TTATTATATATGCAAGTGTT+TGG | + | chr1.4:81096184-81096203 | None:intergenic | 20.0% |
| !!! | ATGTATCAACTATTTCTATA+AGG | + | chr1.4:81095987-81096006 | None:intergenic | 20.0% |
| !!! | TTATAGAAATAGTTGATACA+TGG | - | chr1.4:81095986-81096005 | MS.gene99664:CDS | 20.0% |
| ! | ATAAAAAAGCTTACCATTCT+TGG | + | chr1.4:81095801-81095820 | None:intergenic | 25.0% |
| ! | TAAAAAAGCTTACCATTCTT+GGG | + | chr1.4:81095800-81095819 | None:intergenic | 25.0% |
| !!! | TATTTTTTTCAACTCCATGT+TGG | - | chr1.4:81096298-81096317 | MS.gene99664:CDS | 25.0% |
| !!! | TGTTTTTGTGATATTGAGTT+AGG | - | chr1.4:81095856-81095875 | MS.gene99664:CDS | 25.0% |
| !!! | TTTTGTTGGTGATATTTGTA+GGG | - | chr1.4:81096378-81096397 | MS.gene99664:CDS | 25.0% |
| !!! | TTTTGTTTATAGGCTTGTTT+GGG | - | chr1.4:81096266-81096285 | MS.gene99664:CDS | 25.0% |
| !!! | TTTTTGTTTATAGGCTTGTT+TGG | - | chr1.4:81096265-81096284 | MS.gene99664:CDS | 25.0% |
| AAAAAAGCTTACCATTCTTG+GGG | + | chr1.4:81095799-81095818 | None:intergenic | 30.0% | |
| GTTTGATTAAGATGTGCTAA+CGG | - | chr1.4:81096355-81096374 | MS.gene99664:CDS | 30.0% | |
| ! | GCATTGAAAAGTTTTACGTT+AGG | + | chr1.4:81095450-81095469 | None:intergenic | 30.0% |
| ! | TTTGTTTATAGGCTTGTTTG+GGG | - | chr1.4:81096267-81096286 | MS.gene99664:CDS | 30.0% |
| !! | TTGAAGGTGTTTATATCGTA+GGG | + | chr1.4:81095069-81095088 | None:intergenic | 30.0% |
| !! | TTTGAAGGTGTTTATATCGT+AGG | + | chr1.4:81095070-81095089 | None:intergenic | 30.0% |
| !!! | GTTTTGTTGGTGATATTTGT+AGG | - | chr1.4:81096377-81096396 | MS.gene99664:CDS | 30.0% |
| !!! | TAGTGACATGGTGATTTTTT+GGG | + | chr1.4:81095037-81095056 | None:intergenic | 30.0% |
| !!! | TTAGTGACATGGTGATTTTT+TGG | + | chr1.4:81095038-81095057 | None:intergenic | 30.0% |
| ACCTTAGCTTCCATAACATT+AGG | + | chr1.4:81095576-81095595 | None:intergenic | 35.0% | |
| ATACCAGTAACAATCATACC+AGG | + | chr1.4:81095753-81095772 | None:intergenic | 35.0% | |
| ATATCAAGTGCTTTCATTCC+AGG | + | chr1.4:81095684-81095703 | None:intergenic | 35.0% | |
| ATGCTATTGTTCGTCTTACA+AGG | - | chr1.4:81095718-81095737 | MS.gene99664:CDS | 35.0% | |
| ATGGAAGTTGCTGAAATTGA+TGG | - | chr1.4:81095771-81095790 | MS.gene99664:CDS | 35.0% | |
| ATTTGTAGGGTCCAACATTT+GGG | - | chr1.4:81096391-81096410 | MS.gene99664:CDS | 35.0% | |
| CCATTGAAGAATGAGGATTT+GGG | + | chr1.4:81094970-81094989 | None:intergenic | 35.0% | |
| GATGCAATTTGGAGATGATA+AGG | - | chr1.4:81096329-81096348 | MS.gene99664:CDS | 35.0% | |
| TATTTGTAGGGTCCAACATT+TGG | - | chr1.4:81096390-81096409 | MS.gene99664:CDS | 35.0% | |
| TCCATTGAAGAATGAGGATT+TGG | + | chr1.4:81094971-81094990 | None:intergenic | 35.0% | |
| TCCTAATGTTATGGAAGCTA+AGG | - | chr1.4:81095572-81095591 | MS.gene99664:intron | 35.0% | |
| TGCTATTGTTCGTCTTACAA+GGG | - | chr1.4:81095719-81095738 | MS.gene99664:CDS | 35.0% | |
| TGGTATGATTGTTACTGGTA+TGG | - | chr1.4:81095752-81095771 | MS.gene99664:CDS | 35.0% | |
| TTGCATGGATCCTAATGTTA+TGG | - | chr1.4:81095563-81095582 | MS.gene99664:intron | 35.0% | |
| ! | AAGTGAACCAGAGCTTATTT+TGG | - | chr1.4:81096503-81096522 | MS.gene99664:CDS | 35.0% |
| ! | CGTAAAACTTTTCAATGCTG+TGG | - | chr1.4:81095452-81095471 | MS.gene99664:intron | 35.0% |
| ! | GTTAAGAGGTTGAAGAGTAT+TGG | - | chr1.4:81095642-81095661 | MS.gene99664:intron | 35.0% |
| ! | TTGTTTATAGGCTTGTTTGG+GGG | - | chr1.4:81096268-81096287 | MS.gene99664:CDS | 35.0% |
| !! | GATACTGATGTTTGGGTTTT+TGG | + | chr1.4:81095229-81095248 | None:intergenic | 35.0% |
| !! | TGAAGGTGTTTATATCGTAG+GGG | + | chr1.4:81095068-81095087 | None:intergenic | 35.0% |
| !! | TTTTTCAACTCCATGTTGGT+TGG | - | chr1.4:81096302-81096321 | MS.gene99664:CDS | 35.0% |
| !!! | AGTGACATGGTGATTTTTTG+GGG | + | chr1.4:81095036-81095055 | None:intergenic | 35.0% |
| !!! | TGGTTGGTTTTGATGCAATT+TGG | - | chr1.4:81096318-81096337 | MS.gene99664:CDS | 35.0% |
| AAGGTTGTTGTGAGTTCTTG+TGG | - | chr1.4:81095591-81095610 | MS.gene99664:intron | 40.0% | |
| ATACATGGACCTGTTTGGAT+TGG | - | chr1.4:81096001-81096020 | MS.gene99664:CDS | 40.0% | |
| ATCATCATTGCCCCAAATGT+TGG | + | chr1.4:81096405-81096424 | None:intergenic | 40.0% | |
| CCATGATACACAATCTTGCA+TGG | - | chr1.4:81095548-81095567 | MS.gene99664:intron | 40.0% | |
| CCATGCAAGATTGTGTATCA+TGG | + | chr1.4:81095551-81095570 | None:intergenic | 40.0% | |
| CCCAAATCCTCATTCTTCAA+TGG | - | chr1.4:81094967-81094986 | MS.gene99664:CDS | 40.0% | |
| GGTATGATTGATCATGTTCC+TGG | - | chr1.4:81095663-81095682 | MS.gene99664:intron | 40.0% | |
| GTTCCTGGTATGATTGTTAC+TGG | - | chr1.4:81095747-81095766 | MS.gene99664:CDS | 40.0% | |
| TCATGTCTGTCATGTAACGA+CGG | + | chr1.4:81095134-81095153 | None:intergenic | 40.0% | |
| TGCATCAAAACCAACCAACA+TGG | + | chr1.4:81096315-81096334 | None:intergenic | 40.0% | |
| TGCTGAGGATTTGATTGTGA+AGG | - | chr1.4:81095476-81095495 | MS.gene99664:intron | 40.0% | |
| TGGTCTTCCATTGAAGAATG+AGG | + | chr1.4:81094977-81094996 | None:intergenic | 40.0% | |
| TGTTGTTACAAACTGGGCTT+TGG | - | chr1.4:81095515-81095534 | MS.gene99664:intron | 40.0% | |
| TTAACACCAGTAGCACCAAA+AGG | + | chr1.4:81095627-81095646 | None:intergenic | 40.0% | |
| TTTGTAGGGTCCAACATTTG+GGG | - | chr1.4:81096392-81096411 | MS.gene99664:CDS | 40.0% | |
| ! | AAGGTGTTTATATCGTAGGG+GGG | + | chr1.4:81095066-81095085 | None:intergenic | 40.0% |
| ! | ACATTTGGCATTGAAGGCAT+TGG | - | chr1.4:81096443-81096462 | MS.gene99664:CDS | 40.0% |
| ! | AGAGACGATGGATTCTTTGA+TGG | + | chr1.4:81095100-81095119 | None:intergenic | 40.0% |
| ! | AGTTGATACATGGACCTGTT+TGG | - | chr1.4:81095996-81096015 | MS.gene99664:CDS | 40.0% |
| ! | ATGATGGCGATACTGATGTT+TGG | + | chr1.4:81095237-81095256 | None:intergenic | 40.0% |
| ! | GAGACGATGGATTCTTTGAT+GGG | + | chr1.4:81095099-81095118 | None:intergenic | 40.0% |
| ! | TGATGGCGATACTGATGTTT+GGG | + | chr1.4:81095236-81095255 | None:intergenic | 40.0% |
| ! | TGTTTATAGGCTTGTTTGGG+GGG | - | chr1.4:81096269-81096288 | MS.gene99664:CDS | 40.0% |
| ! | TTTGATGGGTGCGAATTTGA+AGG | + | chr1.4:81095085-81095104 | None:intergenic | 40.0% |
| ! | TTTGGGGCAATGATGATATC+AGG | - | chr1.4:81096408-81096427 | MS.gene99664:CDS | 40.0% |
| !! | ACCTGTTTGGATTGGCTATT+TGG | - | chr1.4:81096009-81096028 | MS.gene99664:CDS | 40.0% |
| !! | AGATGTGCTAACGGTTTTGT+TGG | - | chr1.4:81096364-81096383 | MS.gene99664:CDS | 40.0% |
| !! | CATTTGGCATTGAAGGCATT+GGG | - | chr1.4:81096444-81096463 | MS.gene99664:CDS | 40.0% |
| !! | CCTGTTTGGATTGGCTATTT+GGG | - | chr1.4:81096010-81096029 | MS.gene99664:CDS | 40.0% |
| !! | GAAGGTGTTTATATCGTAGG+GGG | + | chr1.4:81095067-81095086 | None:intergenic | 40.0% |
| !! | TGCTGGTGTTGTTACAAACT+GGG | - | chr1.4:81095509-81095528 | MS.gene99664:intron | 40.0% |
| !! | TTGCTGGTGTTGTTACAAAC+TGG | - | chr1.4:81095508-81095527 | MS.gene99664:intron | 40.0% |
| !!! | GTGACATGGTGATTTTTTGG+GGG | + | chr1.4:81095035-81095054 | None:intergenic | 40.0% |
| !!! | TGACATGGTGATTTTTTGGG+GGG | + | chr1.4:81095034-81095053 | None:intergenic | 40.0% |
| AGGACAGAAAGCTGCACATT+TGG | - | chr1.4:81096428-81096447 | MS.gene99664:CDS | 45.0% | |
| CATCTCTTCCTCGACGAAAT+CGG | - | chr1.4:81095336-81095355 | MS.gene99664:intron | 45.0% | |
| CATGTCTGTCATGTAACGAC+GGG | + | chr1.4:81095133-81095152 | None:intergenic | 45.0% | |
| CCCAAATAGCCAATCCAAAC+AGG | + | chr1.4:81096013-81096032 | None:intergenic | 45.0% | |
| CTTACAAGGGAAGTTGTTCC+TGG | - | chr1.4:81095732-81095751 | MS.gene99664:CDS | 45.0% | |
| GCAGAAGCCAAAATAAGCTC+TGG | + | chr1.4:81096513-81096532 | None:intergenic | 45.0% | |
| GGCAGGAACAATGCAATTGA+TGG | - | chr1.4:81096465-81096484 | MS.gene99664:CDS | 45.0% | |
| GTGAAGGAAAACAGAGTTGC+TGG | - | chr1.4:81095492-81095511 | MS.gene99664:intron | 45.0% | |
| GTGAGTTCTTGTGGACATGA+TGG | - | chr1.4:81095600-81095619 | MS.gene99664:intron | 45.0% | |
| TGAAGTAGTGAGAGATGCAG+TGG | + | chr1.4:81094944-81094963 | None:intergenic | 45.0% | |
| TTCGTAAGCGCATGAAAGAC+CGG | + | chr1.4:81095202-81095221 | None:intergenic | 45.0% | |
| ! | AGCTGCACATTTGGCATTGA+AGG | - | chr1.4:81096437-81096456 | MS.gene99664:CDS | 45.0% |
| ! | TGCAAGAAGCTTGCTCATGA+TGG | + | chr1.4:81095424-81095443 | None:intergenic | 45.0% |
| ! | TGTGGACATGATGGTCCTTT+TGG | - | chr1.4:81095609-81095628 | MS.gene99664:intron | 45.0% |
| ! | TTTGGCTTCTGCTGAATCAC+AGG | - | chr1.4:81096521-81096540 | MS.gene99664:CDS | 45.0% |
| !! | AATTGATGGTGCCCCAAGAA+TGG | - | chr1.4:81095785-81095804 | MS.gene99664:CDS | 45.0% |
| !! | GGTGGATTTGATGATAGTGG+AGG | + | chr1.4:81095013-81095032 | None:intergenic | 45.0% |
| !! | TTGGTGCTACTGGTGTTAAG+AGG | - | chr1.4:81095628-81095647 | MS.gene99664:intron | 45.0% |
| GGTCATTTCACGAGAGACGA+TGG | + | chr1.4:81095112-81095131 | None:intergenic | 50.0% | |
| GTTTATATCGTAGGGGGGTG+TGG | + | chr1.4:81095061-81095080 | None:intergenic | 50.0% | |
| TTTCAATGCTGTGGCTGCTG+AGG | - | chr1.4:81095461-81095480 | MS.gene99664:intron | 50.0% | |
| ! | GGGGGTGGATTTGATGATAG+TGG | + | chr1.4:81095016-81095035 | None:intergenic | 50.0% |
| ! | TGGTTTGCGAACAACCATGG+CGG | + | chr1.4:81095313-81095332 | None:intergenic | 50.0% |
| !! | AGCTGGTTTGCGAACAACCA+TGG | + | chr1.4:81095316-81095335 | None:intergenic | 50.0% |
| !! | ATTCGACACCGATTTCGTCG+AGG | + | chr1.4:81095347-81095366 | None:intergenic | 50.0% |
| !! | GCTGACGGATTGTTCGATGA+TGG | + | chr1.4:81095253-81095272 | None:intergenic | 50.0% |
| !!! | CATGGTGATTTTTTGGGGGG+TGG | + | chr1.4:81095031-81095050 | None:intergenic | 50.0% |
| !!! | GATGGTCCTTTTGGTGCTAC+TGG | - | chr1.4:81095618-81095637 | MS.gene99664:intron | 50.0% |
| ATCGAACAATCCGTCAGCCC+CGG | - | chr1.4:81095255-81095274 | MS.gene99664:intron | 55.0% | |
| TCGTCGAGGAAGAGATGAGC+TGG | + | chr1.4:81095333-81095352 | None:intergenic | 55.0% | |
| ! | GTGGAGGTGCGAGTAGCAAT+TGG | + | chr1.4:81094997-81095016 | None:intergenic | 55.0% |
| !! | TGGCATTGAAGGCATTGGGC+AGG | - | chr1.4:81096448-81096467 | MS.gene99664:CDS | 55.0% |
| GACACCGACGTCGTCATCGT+CGG | - | chr1.4:81095165-81095184 | MS.gene99664:intron | 60.0% | |
| GACGATGACGACGTCGGTGT+CGG | + | chr1.4:81095166-81095185 | None:intergenic | 60.0% | |
| TGGTCAGCTCTTCTCCGCCA+TGG | - | chr1.4:81095296-81095315 | MS.gene99664:intron | 60.0% | |
| ! | GGGGGGTGTGGTTAGTGACA+TGG | + | chr1.4:81095049-81095068 | None:intergenic | 60.0% |
| CGACGTCGTCATCGTCGGTG+CGG | - | chr1.4:81095170-81095189 | MS.gene99664:intron | 65.0% | |
| CGTCATCGTCGGTGCGGGTT+CGG | - | chr1.4:81095176-81095195 | MS.gene99664:intron | 65.0% | |
| GAACAATCCGTCAGCCCCGG+CGG | - | chr1.4:81095258-81095277 | MS.gene99664:intron | 65.0% | |
| GACGTCGTCATCGTCGGTGC+GGG | - | chr1.4:81095171-81095190 | MS.gene99664:intron | 65.0% | |
| ! | CGCACCGACGATGACGACGT+CGG | + | chr1.4:81095172-81095191 | None:intergenic | 65.0% |
| ACCGAGCCATGCACCACCGC+CGG | + | chr1.4:81095277-81095296 | None:intergenic | 70.0% | |
| ATCGTCGGTGCGGGTTCGGC+CGG | - | chr1.4:81095180-81095199 | MS.gene99664:intron | 70.0% | |
| !! | GACGACGTCGGTGTCGGCGT+AGG | + | chr1.4:81095160-81095179 | None:intergenic | 70.0% |
| CAATCCGTCAGCCCCGGCGG+TGG | - | chr1.4:81095261-81095280 | MS.gene99664:intron | 75.0% | |
| CCCGGCGGTGGTGCATGGCT+CGG | - | chr1.4:81095273-81095292 | MS.gene99664:intron | 75.0% | |
| CCGAGCCATGCACCACCGCC+GGG | + | chr1.4:81095276-81095295 | None:intergenic | 75.0% | |
| CGAGCCATGCACCACCGCCG+GGG | + | chr1.4:81095275-81095294 | None:intergenic | 75.0% | |
| TCAGCCCCGGCGGTGGTGCA+TGG | - | chr1.4:81095268-81095287 | MS.gene99664:intron | 75.0% | |
| TGCACCACCGCCGGGGCTGA+CGG | + | chr1.4:81095268-81095287 | None:intergenic | 75.0% | |
| ! | GGCGGTGGTGCATGGCTCGG+TGG | - | chr1.4:81095276-81095295 | MS.gene99664:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 81094937 | 81096560 | 81094937 | ID=MS.gene99664 |
| chr1.4 | mRNA | 81094937 | 81096560 | 81094937 | ID=MS.gene99664.t1;Parent=MS.gene99664 |
| chr1.4 | exon | 81095691 | 81096560 | 81095691 | ID=MS.gene99664.t1.exon1;Parent=MS.gene99664.t1 |
| chr1.4 | CDS | 81095691 | 81096560 | 81095691 | ID=cds.MS.gene99664.t1;Parent=MS.gene99664.t1 |
| chr1.4 | exon | 81094937 | 81095098 | 81094937 | ID=MS.gene99664.t1.exon2;Parent=MS.gene99664.t1 |
| chr1.4 | CDS | 81094937 | 81095098 | 81094937 | ID=cds.MS.gene99664.t1;Parent=MS.gene99664.t1 |
| Gene Sequence |
| Protein sequence |
