AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048888.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048888.01.T01 MTR_8g102540 91.176 544 19 1 1 544 1 515 0.0 1012
MsG0080048888.01.T01 MTR_8g102540 90.538 465 15 1 1 465 1 436 0.0 854
MsG0080048888.01.T01 MTR_8g102540 96.618 414 14 0 131 544 23 436 0.0 828
MsG0080048888.01.T01 MTR_8g102540 96.585 410 14 0 135 544 1 410 0.0 818
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048888.01.T01 AT2G40570 59.598 547 160 6 5 531 7 512 0.0 642
MsG0080048888.01.T01 AT2G40570 57.377 488 147 6 5 472 7 453 0.0 541
MsG0080048888.01.T01 AT2G40570 59.204 402 132 5 150 531 1 390 1.25e-162 468

Find 23 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACCTTCGTTGTGGCTTA+TGG 0.270853 contig514end:-13640 MsG0080048888.01.T01:exon
TGTCGTTTGTTACTAGTATT+AGG 0.286248 contig514end:-13926 MsG0080048888.01.T01:exon
CTTCATGTGGCTCATCTTGC+CGG 0.360588 contig514end:-13530 MsG0080048888.01.T01:intron
TTGGTGAAATCTCTCAATTA+TGG 0.388583 contig514end:-13682 MsG0080048888.01.T01:exon
AGAGAGAGAGATTTGGATGG+AGG 0.401988 contig514end:-13822 MsG0080048888.01.T01:exon
GATTTGGATGGAGGTTTCAG+AGG 0.461438 contig514end:-13813 MsG0080048888.01.T01:exon
ATTTGGATGGAGGTTTCAGA+GGG 0.487914 contig514end:-13812 MsG0080048888.01.T01:exon
AGTGGAGAAAGAACAATTGT+TGG 0.522246 contig514end:+13565 MsG0080048888.01.T01:intergenic
ATTTGAAGTAACAAGTGGAA+TGG 0.557228 contig514end:+13603 MsG0080048888.01.T01:intergenic
CGGCAAGATGAGCCACATGA+AGG 0.587451 contig514end:+13531 MsG0080048888.01.T01:intergenic
CAACGAAGGTTTGCGAGAAG+AGG 0.590031 contig514end:+13650 MsG0080048888.01.T01:intergenic
CGTGTGAGCCACTCTGTTGG+CGG 0.604497 contig514end:-13896 MsG0080048888.01.T01:exon
ATGAAGGTTGAGACGAGCAG+TGG 0.605089 contig514end:+13547 MsG0080048888.01.T01:intergenic
TGCTCGTCTCAACCTTCATG+TGG 0.609552 contig514end:-13543 MsG0080048888.01.T01:exon
CTTCTCGCAAACCTTCGTTG+TGG 0.610869 contig514end:-13647 MsG0080048888.01.T01:exon
GTTCGTGTGAGCCACTCTGT+TGG 0.613695 contig514end:-13899 MsG0080048888.01.T01:exon
TGTTACTTCAAATCCACCGA+TGG 0.619805 contig514end:-13593 MsG0080048888.01.T01:exon
TTTGCGAGAAGAGGAAGTTG+AGG 0.623087 contig514end:+13659 MsG0080048887.01.T01:intergenic
GGTGGATTTGAAGTAACAAG+TGG 0.624038 contig514end:+13598 MsG0080048887.01.T01:intergenic
ATTGTTGGTGTGACCATCGG+TGG 0.626408 contig514end:+13580 MsG0080048887.01.T01:intergenic
ACAATTGTTGGTGTGACCAT+CGG 0.637223 contig514end:+13577 MsG0080048887.01.T01:intergenic
AGTATCAGCCGCCAACAGAG+TGG 0.696094 contig514end:+13888 MsG0080048887.01.T01:intergenic
AGTACCATAAGCCACAACGA+AGG 0.749652 contig514end:+13636 MsG0080048887.01.T01:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAATTTAAGTCAAT+AGG + contig514end:12470-12489 MsG0080048888.01.T01:intergenic 10.0%
!! TTAAATATGTTCTTAATTAA+TGG + contig514end:12314-12333 MsG0080048888.01.T01:intergenic 10.0%
!! TTTAGGAATATTATTTAATA+AGG + contig514end:12804-12823 MsG0080048888.01.T01:intergenic 10.0%
!!! ATATATATTTTAAGTAGAAA+TGG + contig514end:13445-13464 MsG0080048888.01.T01:intergenic 10.0%
!!! TTTAAATTTAAAATTAGTAG+TGG - contig514end:13080-13099 MsG0080048888.01.T01:CDS 10.0%
!! AACTAGAATTATAATTGAAT+AGG + contig514end:10483-10502 MsG0080048888.01.T01:intergenic 15.0%
!! ATACTAATTAACAATTGAAT+TGG + contig514end:13031-13050 MsG0080048888.01.T01:intergenic 15.0%
!! TCTACTTAAAATATATATCA+TGG - contig514end:13447-13466 MsG0080048888.01.T01:intron 15.0%
!! TTGAAATAAAATGTAAAAGA+GGG + contig514end:10948-10967 MsG0080048888.01.T01:intergenic 15.0%
!!! AACACATAAAACTTTTAAAT+AGG + contig514end:13186-13205 MsG0080048888.01.T01:intergenic 15.0%
!!! ATATTTTACTATGTTTTATG+TGG - contig514end:12549-12568 MsG0080048888.01.T01:CDS 15.0%
!!! ATGAAAATCTCTTTTAAATT+GGG + contig514end:10869-10888 MsG0080048888.01.T01:intergenic 15.0%
!!! ATTTAAAAGAGATTTTCATA+TGG - contig514end:10870-10889 MsG0080048888.01.T01:intron 15.0%
!!! GATAGATTACTTTTATAATT+TGG + contig514end:11262-11281 MsG0080048888.01.T01:intergenic 15.0%
!!! TATATATAGTCTTACAAATT+TGG - contig514end:10671-10690 MsG0080048888.01.T01:CDS 15.0%
!!! TATGAAAATCTCTTTTAAAT+TGG + contig514end:10870-10889 MsG0080048888.01.T01:intergenic 15.0%
!!! TTTGAAATAAAATGTAAAAG+AGG + contig514end:10949-10968 MsG0080048888.01.T01:intergenic 15.0%
!!! TTTTTTAACAAATTGTTCAT+GGG - contig514end:11119-11138 MsG0080048888.01.T01:CDS 15.0%
!!! TTTTTTTAACAAATTGTTCA+TGG - contig514end:11118-11137 MsG0080048888.01.T01:CDS 15.0%
!! AACAGCACAATTATTATAAA+GGG + contig514end:11371-11390 MsG0080048888.01.T01:intergenic 20.0%
!! AATATTATGATGTACTATAG+TGG - contig514end:12069-12088 MsG0080048888.01.T01:CDS 20.0%
!! ATGTAAAAGCAATATTAAAG+TGG - contig514end:13945-13964 MsG0080048888.01.T01:exon 20.0%
!! GTTTATGATCTTATAAATTC+AGG - contig514end:11790-11809 MsG0080048888.01.T01:intron 20.0%
!! TATATATCATGGTTATTTAC+AGG - contig514end:13458-13477 MsG0080048888.01.T01:intron 20.0%
!! TTTAAACTTCAACAAAATTG+TGG - contig514end:12186-12205 MsG0080048888.01.T01:CDS 20.0%
!!! AAAATTCTTATTTGTCTGAA+GGG - contig514end:10966-10985 MsG0080048888.01.T01:intron 20.0%
!!! ATTATTTTTCTTTGCTTTTC+AGG - contig514end:13257-13276 MsG0080048888.01.T01:intron 20.0%
!!! CAAGTATTTAACTTTCTTAT+TGG - contig514end:13602-13621 MsG0080048888.01.T01:exon 20.0%
!!! CAATGTCAACAAATATTTTA+TGG - contig514end:11215-11234 MsG0080048888.01.T01:intron 20.0%
!!! GATTTTGAGCAAAATTTAAT+TGG + contig514end:13813-13832 MsG0080048888.01.T01:intergenic 20.0%
!!! TATAAGGACTTTTTTTTAAG+AGG - contig514end:11311-11330 MsG0080048888.01.T01:CDS 20.0%
!!! TATATTTTAAGTAGAAATGG+TGG + contig514end:13442-13461 MsG0080048888.01.T01:intergenic 20.0%
!!! TTATTTTTCTTTGCTTTTCA+GGG - contig514end:13258-13277 MsG0080048888.01.T01:intron 20.0%
!!! TTTTATACTTTTGTTCACAT+TGG - contig514end:10729-10748 MsG0080048888.01.T01:intron 20.0%
! AAATAAAATGTAAAAGAGGG+AGG + contig514end:10945-10964 MsG0080048888.01.T01:intergenic 25.0%
! AAATTTAAGTCAATAGGACT+AGG + contig514end:12464-12483 MsG0080048888.01.T01:intergenic 25.0%
! ATGTCACTATTTGATGAAAA+AGG - contig514end:13317-13336 MsG0080048888.01.T01:intron 25.0%
! ATTCAATATGCAATCAACAT+CGG + contig514end:12610-12629 MsG0080048888.01.T01:intergenic 25.0%
! CAACAGCACAATTATTATAA+AGG + contig514end:11372-11391 MsG0080048888.01.T01:intergenic 25.0%
! TAATTATGAATTCCATGTTG+AGG + contig514end:13770-13789 MsG0080048888.01.T01:intergenic 25.0%
! TACTTCATTTAACCATATGA+CGG + contig514end:11590-11609 MsG0080048888.01.T01:intergenic 25.0%
! TATATAATTCCAGCTAAACT+CGG + contig514end:11704-11723 MsG0080048888.01.T01:intergenic 25.0%
! TGATATCTCATAAAACATTC+TGG + contig514end:10651-10670 MsG0080048888.01.T01:intergenic 25.0%
! TTAGTGTTCTAACAAAATCA+TGG + contig514end:12217-12236 MsG0080048888.01.T01:intergenic 25.0%
!! AACAAAGCAAAGCTTTTATA+AGG - contig514end:11295-11314 MsG0080048888.01.T01:intron 25.0%
!! ATATAGTCTTACAAATTTGG+TGG - contig514end:10674-10693 MsG0080048888.01.T01:CDS 25.0%
!! CAAAATTCTTATTTGTCTGA+AGG - contig514end:10965-10984 MsG0080048888.01.T01:intron 25.0%
!! CTTTTACATTTCATTCAAAC+TGG + contig514end:13934-13953 MsG0080048888.01.T01:intergenic 25.0%
!! GTATTTAACTTTCTTATTGG+CGG - contig514end:13605-13624 MsG0080048888.01.T01:exon 25.0%
!! TTTTCTACTAATAGTTGACT+AGG - contig514end:12922-12941 MsG0080048888.01.T01:intron 25.0%
!!! ATTGTTGATTCTACTAGAAA+AGG - contig514end:10775-10794 MsG0080048888.01.T01:intron 25.0%
!!! GCACTGATTTTAATTTTTCA+TGG - contig514end:12752-12771 MsG0080048888.01.T01:intron 25.0%
!!! TATTTTTCTTTGCTTTTCAG+GGG - contig514end:13259-13278 MsG0080048888.01.T01:intron 25.0%
!!! TTGAAGATTCTGAAATTTCT+TGG - contig514end:11977-11996 MsG0080048888.01.T01:CDS 25.0%
AATCAAAGGACGAATTTGAT+AGG + contig514end:10517-10536 MsG0080048888.01.T01:intergenic 30.0%
AATCCAATTTCTCACATATG+TGG - contig514end:13386-13405 MsG0080048888.01.T01:CDS 30.0%
AGATATTGTTGAAAAGGGTA+GGG - contig514end:11840-11859 MsG0080048888.01.T01:intron 30.0%
AGTAGTGAATTCATGCAATT+TGG + contig514end:12960-12979 MsG0080048888.01.T01:intergenic 30.0%
AGTGATTTAACTCTAATCTG+AGG + contig514end:11895-11914 MsG0080048888.01.T01:intergenic 30.0%
ATCAAAAGATATACTACCTC+TGG + contig514end:12433-12452 MsG0080048888.01.T01:intergenic 30.0%
ATGCATATGGTGATTTACAT+TGG - contig514end:12354-12373 MsG0080048888.01.T01:CDS 30.0%
ATTAAGAACACAAGTCCATA+TGG + contig514end:10836-10855 MsG0080048888.01.T01:intergenic 30.0%
ATTCCACATATGTGAGAAAT+TGG + contig514end:13392-13411 MsG0080048888.01.T01:intergenic 30.0%
ATTCGTCCTTTGATTCTATA+AGG - contig514end:10522-10541 MsG0080048888.01.T01:intron 30.0%
CATAATTATACTCTGATCTC+TGG - contig514end:13782-13801 MsG0080048888.01.T01:exon 30.0%
GAGAGAAAAAATTTCAAAGC+AGG - contig514end:12388-12407 MsG0080048888.01.T01:CDS 30.0%
GCCATAATGAATAGACAAAA+GGG - contig514end:10603-10622 MsG0080048888.01.T01:intron 30.0%
GTTGCAGATATTGTTGAAAA+GGG - contig514end:11835-11854 MsG0080048888.01.T01:intron 30.0%
TAAACATGATTCCAAAAGAG+AGG + contig514end:11775-11794 MsG0080048888.01.T01:intergenic 30.0%
TGCATATGGTGATTTACATT+GGG - contig514end:12355-12374 MsG0080048888.01.T01:CDS 30.0%
TGCCATAATGAATAGACAAA+AGG - contig514end:10602-10621 MsG0080048888.01.T01:intron 30.0%
TTAAGAACACAAGTCCATAT+GGG + contig514end:10835-10854 MsG0080048888.01.T01:intergenic 30.0%
TTCAGAATCTTCAAAAGACT+TGG + contig514end:11971-11990 MsG0080048888.01.T01:intergenic 30.0%
TTGGTGAAATCTCTCAATTA+TGG - contig514end:10288-10307 MsG0080048888.01.T01:exon 30.0%
TTGTGATTAGCAACATGATT+GGG - contig514end:12515-12534 MsG0080048888.01.T01:CDS 30.0%
TTTAGCTGGAATTATATACC+AGG - contig514end:11706-11725 MsG0080048888.01.T01:intron 30.0%
TTTATACATCCATGTTGTCA+AGG - contig514end:13861-13880 MsG0080048888.01.T01:exon 30.0%
! AATTGAAGCCTTTTCTGTTA+GGG + contig514end:11455-11474 MsG0080048888.01.T01:intergenic 30.0%
! ATTTGAAGTAACAAGTGGAA+TGG + contig514end:10370-10389 MsG0080048888.01.T01:intergenic 30.0%
! GTCTTGATTTTTGTATGCAT+AGG - contig514end:13708-13727 MsG0080048888.01.T01:exon 30.0%
! TATCAAGATTCTGTTTTCGT+TGG - contig514end:10269-10288 MsG0080048888.01.T01:exon 30.0%
! TGCAACTTTTGCTAAAATTG+TGG + contig514end:12164-12183 MsG0080048888.01.T01:intergenic 30.0%
! TGTCGTTTGTTACTAGTATT+AGG - contig514end:10044-10063 MsG0080048888.01.T01:exon 30.0%
! TTTACAGGTACTTTTGATGA+TGG - contig514end:13473-13492 MsG0080048888.01.T01:intron 30.0%
!! AGATTCTGAAATTTCTTGGT+TGG - contig514end:11981-12000 MsG0080048888.01.T01:CDS 30.0%
!! GATTCTGAAATTTCTTGGTT+GGG - contig514end:11982-12001 MsG0080048888.01.T01:CDS 30.0%
!! TTACAGGTACTTTTGATGAT+GGG - contig514end:13474-13493 MsG0080048888.01.T01:intron 30.0%
!!! CTTTGCTTTGTTTTTAGTCA+TGG + contig514end:11287-11306 MsG0080048888.01.T01:intergenic 30.0%
AAAATGCATTCTTCAAACGC+AGG - contig514end:13628-13647 MsG0080048888.01.T01:exon 35.0%
AACAGAAAAGGCTTCAATTG+AGG - contig514end:11456-11475 MsG0080048888.01.T01:intron 35.0%
ACTCAACAATTGAAAGCAAG+TGG - contig514end:11496-11515 MsG0080048888.01.T01:intron 35.0%
AGTGATCTTACACTCAATTG+TGG + contig514end:10910-10929 MsG0080048888.01.T01:intergenic 35.0%
AGTGGAGAAAGAACAATTGT+TGG + contig514end:10408-10427 MsG0080048888.01.T01:intergenic 35.0%
ATAATTAGTACTAGAGCCAG+AGG - contig514end:12414-12433 MsG0080048888.01.T01:CDS 35.0%
ATATCTGCATCTTCCAATTG+TGG - contig514end:12674-12693 MsG0080048888.01.T01:intron 35.0%
ATCCAACACATGTCACTAAA+TGG - contig514end:13507-13526 MsG0080048888.01.T01:intron 35.0%
CAAATTGTTCATGGGTGAAT+TGG - contig514end:11127-11146 MsG0080048888.01.T01:CDS 35.0%
CAATTGTGGTTAGTATGAAG+TGG - contig514end:12688-12707 MsG0080048888.01.T01:intron 35.0%
CACTTCATACTAACCACAAT+TGG + contig514end:12690-12709 MsG0080048888.01.T01:intergenic 35.0%
CAGATATTGTTGAAAAGGGT+AGG - contig514end:11839-11858 MsG0080048888.01.T01:intron 35.0%
CTAAATGGGATATGAGAAGA+CGG - contig514end:13522-13541 MsG0080048888.01.T01:intron 35.0%
CTTGTGATTAGCAACATGAT+TGG - contig514end:12514-12533 MsG0080048888.01.T01:CDS 35.0%
GAGCAATTTCGTACATAAGT+AGG + contig514end:12253-12272 MsG0080048888.01.T01:intergenic 35.0%
GCACAACAAAGACTCAAATA+TGG + contig514end:13127-13146 MsG0080048888.01.T01:intergenic 35.0%
GGTTGCAGATATTGTTGAAA+AGG - contig514end:11834-11853 MsG0080048888.01.T01:intron 35.0%
GTGTTCTAACAAAATCATGG+TGG + contig514end:12214-12233 MsG0080048888.01.T01:intergenic 35.0%
TAAGTAGAAATGGTGGTTGA+TGG + contig514end:13435-13454 MsG0080048888.01.T01:intergenic 35.0%
TCACTACTTGTGTTGTGTTA+GGG - contig514end:12972-12991 MsG0080048888.01.T01:intron 35.0%
TCCAACACATGTCACTAAAT+GGG - contig514end:13508-13527 MsG0080048888.01.T01:intron 35.0%
TTCACTACTTGTGTTGTGTT+AGG - contig514end:12971-12990 MsG0080048888.01.T01:intron 35.0%
TTGGTTGGGTTCTACTAATT+TGG - contig514end:11996-12015 MsG0080048888.01.T01:CDS 35.0%
TTTCTCAGAAAACCGTCATA+TGG - contig514end:11575-11594 MsG0080048888.01.T01:intron 35.0%
! AGAGCACCTTATAGAATCAA+AGG + contig514end:10531-10550 MsG0080048888.01.T01:intergenic 35.0%
! ATGATGAAGAAAGTTGGTCT+AGG - contig514end:11737-11756 MsG0080048888.01.T01:intron 35.0%
! ATTGAAGCCTTTTCTGTTAG+GGG + contig514end:11454-11473 MsG0080048888.01.T01:intergenic 35.0%
! CAATTGAAGCCTTTTCTGTT+AGG + contig514end:11456-11475 MsG0080048888.01.T01:intergenic 35.0%
! GCCCTTTTGTCTATTCATTA+TGG + contig514end:10607-10626 MsG0080048888.01.T01:intergenic 35.0%
! GTATTCGCTTTGAATTCTCT+CGG - contig514end:12888-12907 MsG0080048888.01.T01:intron 35.0%
! TGATGAAGAAAGTTGGTCTA+GGG - contig514end:11738-11757 MsG0080048888.01.T01:intron 35.0%
!! GTTTTCTGAGAAATCCATAG+AGG + contig514end:11568-11587 MsG0080048888.01.T01:intergenic 35.0%
AAAACAGGAGGACTCTGATT+GGG - contig514end:11399-11418 MsG0080048888.01.T01:intron 40.0%
AAAAGGGCAAAAGTGAGTCA+TGG - contig514end:10619-10638 MsG0080048888.01.T01:intron 40.0%
AAATCCCAAGAATCATGGTG+AGG + contig514end:11613-11632 MsG0080048888.01.T01:intergenic 40.0%
AACACAAGTCCATATGGGTA+TGG + contig514end:10830-10849 MsG0080048888.01.T01:intergenic 40.0%
AAGTACCTCACCATGATTCT+TGG - contig514end:11605-11624 MsG0080048888.01.T01:intron 40.0%
ACAATTGTTGGTGTGACCAT+CGG + contig514end:10396-10415 MsG0080048888.01.T01:intergenic 40.0%
ACATCAATTGTGCCTCAACA+TGG - contig514end:13755-13774 MsG0080048888.01.T01:exon 40.0%
ACATGATTCCAAAAGAGAGG+TGG + contig514end:11772-11791 MsG0080048888.01.T01:intergenic 40.0%
AGAAACCATTACGTCCTCTA+TGG - contig514end:11551-11570 MsG0080048888.01.T01:intron 40.0%
AGGACGTAATGGTTTCTTCA+AGG + contig514end:11548-11567 MsG0080048888.01.T01:intergenic 40.0%
AGTACCTCACCATGATTCTT+GGG - contig514end:11606-11625 MsG0080048888.01.T01:intron 40.0%
AGTGACATGTGTTGGATTGA+AGG + contig514end:13504-13523 MsG0080048888.01.T01:intergenic 40.0%
ATCCTTCTAAATCATTCCGC+TGG - contig514end:13156-13175 MsG0080048888.01.T01:CDS 40.0%
ATGCAGATATGCTTCTGAAC+TGG + contig514end:12664-12683 MsG0080048888.01.T01:intergenic 40.0%
ATTTGGATGGAGGTTTCAGA+GGG - contig514end:10158-10177 MsG0080048888.01.T01:exon 40.0%
CAACAATATCTGCAACCTTC+TGG + contig514end:11831-11850 MsG0080048888.01.T01:intergenic 40.0%
CAGGAGATGATGAAGAAAGT+TGG - contig514end:11731-11750 MsG0080048888.01.T01:intron 40.0%
CTTCTGGTCTGTTGTAATGA+TGG - contig514end:12866-12885 MsG0080048888.01.T01:intron 40.0%
GAAATCCATAGAGGACGTAA+TGG + contig514end:11559-11578 MsG0080048888.01.T01:intergenic 40.0%
GAAGCAGAGACAAGTATGAT+TGG + contig514end:11640-11659 MsG0080048888.01.T01:intergenic 40.0%
GGATTGTTGTCGAATAGTAC+CGG + contig514end:10462-10481 MsG0080048888.01.T01:intergenic 40.0%
GGTTCTACTAATTTGGCAGT+TGG - contig514end:12003-12022 MsG0080048888.01.T01:CDS 40.0%
GTGTGAAATCCCAAGAATCA+TGG + contig514end:11618-11637 MsG0080048888.01.T01:intergenic 40.0%
GTTGCTAATCACAAGTAGAC+TGG + contig514end:12509-12528 MsG0080048888.01.T01:intergenic 40.0%
TAAAACAGGAGGACTCTGAT+TGG - contig514end:11398-11417 MsG0080048888.01.T01:intron 40.0%
TAGAGAGAGAGAGAGAGATT+TGG - contig514end:10141-10160 MsG0080048888.01.T01:exon 40.0%
TCACCATCAATCGAAACATG+TGG + contig514end:12116-12135 MsG0080048888.01.T01:intergenic 40.0%
TCCCATTTAGTGACATGTGT+TGG + contig514end:13512-13531 MsG0080048888.01.T01:intergenic 40.0%
TGCAGATATGCTTCTGAACT+GGG + contig514end:12663-12682 MsG0080048888.01.T01:intergenic 40.0%
TGGAATTATATACCAGGTGC+AGG - contig514end:11712-11731 MsG0080048888.01.T01:intron 40.0%
TGTCCAAAACCATACCCATA+TGG - contig514end:10818-10837 MsG0080048888.01.T01:intron 40.0%
TTGCCACATGTTTCGATTGA+TGG - contig514end:12110-12129 MsG0080048888.01.T01:CDS 40.0%
TTTCTTCAAGGAAGCAGAGA+GGG + contig514end:11536-11555 MsG0080048888.01.T01:intergenic 40.0%
! AGTCCATATGGGTATGGTTT+TGG + contig514end:10824-10843 MsG0080048888.01.T01:intergenic 40.0%
! ATCAGAGTCCTCCTGTTTTA+CGG + contig514end:11398-11417 MsG0080048888.01.T01:intergenic 40.0%
! CTTTTAAATAGGTCGTCCAG+CGG + contig514end:13175-13194 MsG0080048888.01.T01:intergenic 40.0%
! GATGAAGAAAGTTGGTCTAG+GGG - contig514end:11739-11758 MsG0080048888.01.T01:intron 40.0%
! GGTGGATTTGAAGTAACAAG+TGG + contig514end:10375-10394 MsG0080048888.01.T01:intergenic 40.0%
! GTTTAACTCCACCTCTCTTT+TGG - contig514end:11761-11780 MsG0080048888.01.T01:intron 40.0%
! TGTTACTTCAAATCCACCGA+TGG - contig514end:10377-10396 MsG0080048888.01.T01:CDS 40.0%
! TTCACATTGGTAGCACAGAA+AGG - contig514end:10742-10761 MsG0080048888.01.T01:intron 40.0%
!! CAACGCTTCTTGTTGTTGAA+TGG - contig514end:12714-12733 MsG0080048888.01.T01:intron 40.0%
!! TTCAATTGAGGAGCACTTAG+AGG - contig514end:11468-11487 MsG0080048888.01.T01:intron 40.0%
ACATCCATGTTGTCAAGGCA+CGG - contig514end:13866-13885 MsG0080048888.01.T01:exon 45.0%
AGACTAACTCCGAGTTTAGC+TGG - contig514end:11692-11711 MsG0080048888.01.T01:intron 45.0%
AGAGAGAGAGATTTGGATGG+AGG - contig514end:10148-10167 MsG0080048888.01.T01:exon 45.0%
AGTACCATAAGCCACAACGA+AGG + contig514end:10337-10356 MsG0080048888.01.T01:intergenic 45.0%
ATGCATTCTTCAAACGCAGG+AGG - contig514end:13631-13650 MsG0080048888.01.T01:exon 45.0%
ATTCTTCAAACGCAGGAGGA+CGG - contig514end:13635-13654 MsG0080048888.01.T01:exon 45.0%
CAAACCTTCGTTGTGGCTTA+TGG - contig514end:10330-10349 MsG0080048888.01.T01:CDS 45.0%
CACTCTCTCCTCTATAAGCA+CGG + contig514end:11870-11889 MsG0080048888.01.T01:intergenic 45.0%
CTCTTTGCACCTACCACTTT+GGG - contig514end:11426-11445 MsG0080048888.01.T01:intron 45.0%
GACCATGCAGAGGAAATTTG+AGG - contig514end:13579-13598 MsG0080048888.01.T01:exon 45.0%
GAGAGAGAGAGAGATTTGGA+TGG - contig514end:10145-10164 MsG0080048888.01.T01:exon 45.0%
GATTTGGATGGAGGTTTCAG+AGG - contig514end:10157-10176 MsG0080048888.01.T01:exon 45.0%
GTCCAGCGGAATGATTTAGA+AGG + contig514end:13161-13180 MsG0080048888.01.T01:intergenic 45.0%
GTTTCTTCAAGGAAGCAGAG+AGG + contig514end:11537-11556 MsG0080048888.01.T01:intergenic 45.0%
TCCTGATGTGTGTAACCAGA+AGG - contig514end:11813-11832 MsG0080048888.01.T01:intron 45.0%
TCTGCTTCTTCTTCGTCGAA+CGG - contig514end:11652-11671 MsG0080048888.01.T01:intron 45.0%
TGCCTCAAATTTCCTCTGCA+TGG + contig514end:13584-13603 MsG0080048888.01.T01:intergenic 45.0%
TGTGGCTGAGTGTTCATGTT+TGG - contig514end:12567-12586 MsG0080048888.01.T01:CDS 45.0%
TTGGGTTCCCCTAACAGAAA+AGG - contig514end:11444-11463 MsG0080048888.01.T01:intron 45.0%
TTTGCGAGAAGAGGAAGTTG+AGG + contig514end:10314-10333 MsG0080048888.01.T01:intergenic 45.0%
! ACATTGGTAGCACAGAAAGG+TGG - contig514end:10745-10764 MsG0080048888.01.T01:intron 45.0%
! ACCTTCTGGTTACACACATC+AGG + contig514end:11817-11836 MsG0080048888.01.T01:intergenic 45.0%
! GCAGTTGGTGCATCTCAATT+TGG - contig514end:12018-12037 MsG0080048888.01.T01:CDS 45.0%
!! CGGAGTTAGTCTTGTTGTGT+TGG + contig514end:11684-11703 MsG0080048888.01.T01:intergenic 45.0%
!! TCACAAGTAGACTGGTCTTC+TGG + contig514end:12501-12520 MsG0080048888.01.T01:intergenic 45.0%
!! TTGAGGAGCACTTAGAGGAA+TGG - contig514end:11473-11492 MsG0080048888.01.T01:intron 45.0%
!!! ATGGTTTTGGACATGCTGTC+TGG + contig514end:10811-10830 MsG0080048888.01.T01:intergenic 45.0%
!!! TGGTTTTGGACATGCTGTCT+GGG + contig514end:10810-10829 MsG0080048888.01.T01:intergenic 45.0%
ACAAATGCACGACCATGCAG+AGG - contig514end:13569-13588 MsG0080048888.01.T01:exon 50.0%
ACTACCGTGCCTTGACAACA+TGG + contig514end:13873-13892 MsG0080048888.01.T01:intergenic 50.0%
ACTGGGAAGACAGACAGTGA+TGG + contig514end:12646-12665 MsG0080048888.01.T01:intergenic 50.0%
ATGAAGGTTGAGACGAGCAG+TGG + contig514end:10426-10445 MsG0080048888.01.T01:intergenic 50.0%
ATTGTTGGTGTGACCATCGG+TGG + contig514end:10393-10412 MsG0080048888.01.T01:intergenic 50.0%
CAACGAAGGTTTGCGAGAAG+AGG + contig514end:10323-10342 MsG0080048888.01.T01:intergenic 50.0%
CACGTGCACACACATGCATA+TGG - contig514end:12341-12360 MsG0080048888.01.T01:CDS 50.0%
CAGTCTGGGAAAACGACTTC+TGG - contig514end:12850-12869 MsG0080048888.01.T01:intron 50.0%
CTTCATGTGGCTCATCTTGC+CGG - contig514end:10440-10459 MsG0080048888.01.T01:CDS 50.0%
CTTCTCGCAAACCTTCGTTG+TGG - contig514end:10323-10342 MsG0080048888.01.T01:CDS 50.0%
GAAACATCAGAAGCCAGCGA+CGG + contig514end:11931-11950 MsG0080048888.01.T01:intergenic 50.0%
GCCAAGTTCAACCTCAGTCT+GGG - contig514end:12836-12855 MsG0080048888.01.T01:intron 50.0%
GCTCTTTGCACCTACCACTT+TGG - contig514end:11425-11444 MsG0080048888.01.T01:intron 50.0%
TCCCAGACTGAGGTTGAACT+TGG + contig514end:12840-12859 MsG0080048888.01.T01:intergenic 50.0%
TCTGTTAGGGGAACCCAAAG+TGG + contig514end:11442-11461 MsG0080048888.01.T01:intergenic 50.0%
TCTTCATCATCTCCTGCACC+TGG + contig514end:11727-11746 MsG0080048888.01.T01:intergenic 50.0%
TGCTCGTCTCAACCTTCATG+TGG - contig514end:10427-10446 MsG0080048888.01.T01:CDS 50.0%
TGCTGTTGCCTCCGTAAAAC+AGG - contig514end:11384-11403 MsG0080048888.01.T01:intron 50.0%
TGTTGCCTCCGTAAAACAGG+AGG - contig514end:11387-11406 MsG0080048888.01.T01:intron 50.0%
TTAGGGGAACCCAAAGTGGT+AGG + contig514end:11438-11457 MsG0080048888.01.T01:intergenic 50.0%
TTCACATGAAGAACCGTCGC+TGG - contig514end:11915-11934 MsG0080048888.01.T01:intron 50.0%
TTGGCGAAGCTCACAGCTTT+AGG + contig514end:12821-12840 MsG0080048888.01.T01:intergenic 50.0%
! AGAGTCCTCCTGTTTTACGG+AGG + contig514end:11395-11414 MsG0080048888.01.T01:intergenic 50.0%
!! GAAGTCGTTTTCCCAGACTG+AGG + contig514end:12850-12869 MsG0080048888.01.T01:intergenic 50.0%
AGGGTACGCCGTGCTTATAG+AGG - contig514end:11859-11878 MsG0080048888.01.T01:intron 55.0%
AGTATCAGCCGCCAACAGAG+TGG + contig514end:10085-10104 MsG0080048888.01.T01:intergenic 55.0%
CGCCAAGTTCAACCTCAGTC+TGG - contig514end:12835-12854 MsG0080048888.01.T01:intron 55.0%
CGGCAAGATGAGCCACATGA+AGG + contig514end:10442-10461 MsG0080048888.01.T01:intergenic 55.0%
GTTCGTGTGAGCCACTCTGT+TGG - contig514end:10071-10090 MsG0080048888.01.T01:exon 55.0%
CGTGTGAGCCACTCTGTTGG+CGG - contig514end:10074-10093 MsG0080048888.01.T01:exon 60.0%
TCAAACGCAGGAGGACGGTG+AGG - contig514end:13640-13659 MsG0080048888.01.T01:exon 60.0%
ACGCAGGAGGACGGTGAGGA+CGG - contig514end:13644-13663 MsG0080048888.01.T01:exon 65.0%
CAGGAGGACGGTGAGGACGG+TGG - contig514end:13647-13666 MsG0080048888.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
contig514end gene 10001 13991 10001 ID=MsG0080048888.01;
contig514end mRNA 10001 13991 10001 ID=MsG0080048888.01.T01;Parent=MsG0080048888.01
contig514end exon 10001 10512 10001 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end CDS 10310 10512 10310 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end CDS 10654 10713 10654 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end exon 10654 10713 10654 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end CDS 11105 11213 11105 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end exon 11105 11213 11105 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end CDS 11297 11397 11297 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end exon 11297 11397 11297 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end CDS 11953 12586 11953 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end exon 11953 12586 11953 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end CDS 13074 13237 13074 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end exon 13074 13237 13074 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end CDS 13362 13448 13362 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end exon 13362 13448 13362 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end CDS 13531 13828 13531 ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end exon 13531 13991 13531 ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
Gene Sequence

>MsG0080048888.01.T01

ATGGAGGTTTCAGAGGGAGAATTTTCGAAGAAGCTAAGCATATACAAAGCAGCAAGAAGCATTAAAAAAAGAGACAACAGTTTATACAACGCACTTAGATCTATCTATCAAGATTCTGTTTTCGTTGGTGAAATCTCTCAATTATGGCCTCAACTTCCTCTTCTCGCAAACCTTCGTTGTGGCTTATGGTACTCTTCTAATTTCCATTCCACTTGTTACTTCAAATCCACCGATGGTCACACCAACAATTGTTCTTTCTCCACTGCTCGTCTCAACCTTCATGTGGCTCATCTTGCCGGTGCTCTCATATATGAGATTATGAATACTTCAAATATGTACATGACTCACTTTTGTCTTGCCATAATGAATAGACAAAAGGGCAAAACACAGAAAGGTGGTTGTATGATTGTTGATTCTACTAGAAAAGGAAAGCGTTTCCCAGACAGCATGTCCAAAACCATACCCATATGGACTTGTGTTCTTAATCGTGCAATTGCCCAATTTAAAAGAGATTTTCATATGGATGATGCTTCAGCACCACAATTGAGTGAGGACTCTGATTGGGATTGCTCTTTGCACCTACCACTTTGGGTTCCCCTAACAGAAAAGGCTTCAATTGAGGAGCACTTAGAGGAATGGACTCAACAATTGAAAGCAAGTGGAGCTGACATTGCTTCCCTCTCTGCTTCCTTGAAGAAACCATTACGTCCTCTATGGATTTCTCAGAAAACCGTCATATGGTTAAATGAAGTACCTCACCATGATTCTTGGGATTTCACACCAATCATACTTGTCTCTGCTTCTTCTTCGTCGAACGGTGTAAGCCAACACAACAAGACTAACTCCGAGTTTAGCTGGAATTATATACCAGGTGCAGGAGATGATGAAGAAAGTTGGTCTAGGGGTTTAACTCCACCTCTCTTTTGGAATCATGTTTATGATCTTATAAATTCAGGTCCTGATGTGTGTAACCAGAAGGTTGCAGATATTGTTGAAAAGGGTAGGGTACGCCGTGCTTATAGAGGAGAGAGTGCTCCTCAGATTAGAGTTAAATCACTTTCACATGAAGAACCGTCGCTGGCTTCTGATGTTTCAAATATTGAAGTTGACACCAAGTCTTTTGAAGATTCTGAAATTTCTTGGTTGGGTTCTACTAATTTGGCAGTTGGTGCATCTCAATTTGCTACAGATGCAGCCGATGTTGATTGCATATTGAATTGTGATTGTGAGTCCATCACTGTCTGTCTTCCCAGTTCAGAAGCATATCTGCATCTTCCAATTGTGAGTTCAAAGTTTGATCGCTTTTCCTTATTAAATAATATTCCTAAAGCTGTGAGCTTCGCCAAGTTCAACCTCAGTCTGGGAAAACGACTTCTGGTCTGTTGTAATGATGGGGAAGATATTAGTATATGTGTTTGCTTAGCAATTTTGATGTCACTATTTGATGAAAAAGGTACTTTTGATGATGGGAATTCCTTCAATCCAACACATGTCACTAAATGGGATATGAGAAGACGGCTTGTATTTGTCTGTAAGTTTGCGACAAATGCACGACCATGCAGAGGAAATTTGAGGCAAGTATTTAACTTTCTTATTGGCGGAAAATGCATTCTTCAAACGCAGGAGGACGGTGAGGACGGTGGCAGTGATGAGTGA
Protein sequence

>MsG0080048888.01.T01

MEVSEGEFSKKLSIYKAARSIKKRDNSLYNALRSIYQDSVFVGEISQLWPQLPLLANLRCGLWYSSNFHSTCYFKSTDGHTNNCSFSTARLNLHVAHLAGALIYEIMNTSNMYMTHFCLAIMNRQKGKTQKGGCMIVDSTRKGKRFPDSMSKTIPIWTCVLNRAIAQFKRDFHMDDASAPQLSEDSDWDCSLHLPLWVPLTEKASIEEHLEEWTQQLKASGADIASLSASLKKPLRPLWISQKTVIWLNEVPHHDSWDFTPIILVSASSSSNGVSQHNKTNSEFSWNYIPGAGDDEESWSRGLTPPLFWNHVYDLINSGPDVCNQKVADIVEKGRVRRAYRGESAPQIRVKSLSHEEPSLASDVSNIEVDTKSFEDSEISWLGSTNLAVGASQFATDAADVDCILNCDCESITVCLPSSEAYLHLPIVSSKFDRFSLLNNIPKAVSFAKFNLSLGKRLLVCCNDGEDISICVCLAILMSLFDEKGTFDDGNSFNPTHVTKWDMRRRLVFVCKFATNARPCRGNLRQVFNFLIGGKCILQTQEDGEDGGSDE*