AlfalfaGEDB | MsG0080048888.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048888.01

KEGG: K15463
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048888.01.T01	XP_003630717.1	91.176	544	19	1	1	544	1	515	0	1012

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048888.01.T01	Q10181	27.495	531	286	15	17	537	9	450	1.88E-46	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047944.01	MsG0080048888.01	0.805117	1.558739e-49	8.178769e-47
MsG0080048888.01	MsG0180001063.01	0.812132	4.944778e-51	3.118098e-48
MsG0080048888.01	MsG0180003189.01	0.802494	5.462706e-49	2.679650e-46
MsG0080048888.01	MsG0180003510.01	0.822318	2.525333e-53	2.106534e-50
MsG0080048888.01	MsG0180003673.01	0.831128	1.989264e-55	2.138948e-52
MsG0080048888.01	MsG0180003686.01	0.819257	1.277379e-52	9.780286e-50
MsG0080048888.01	MsG0180003725.01	0.808073	3.705326e-50	2.098291e-47
MsG0080048888.01	MsG0180003810.01	0.804330	2.275585e-49	1.170014e-46
MsG0080048888.01	MsG0180004465.01	0.811294	7.522294e-51	4.638449e-48
MsG0080048888.01	MsG0180006134.01	0.822813	1.937464e-53	1.639081e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0080048888.01.T01	MTR_8g102540	91.176	544	19	1	1	544	1	515	1012
MsG0080048888.01.T01	MTR_8g102540	90.538	465	15	1	1	465	1	436	854
MsG0080048888.01.T01	MTR_8g102540	96.618	414	14	0	131	544	23	436	828
MsG0080048888.01.T01	MTR_8g102540	96.585	410	14	0	135	544	1	410	818

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048888.01.T01	AT2G40570	59.598	547	160	6	5	531	7	512	0.0	642
MsG0080048888.01.T01	AT2G40570	57.377	488	147	6	5	472	7	453	0.0	541
MsG0080048888.01.T01	AT2G40570	59.204	402	132	5	150	531	1	390	1.25e-162	468

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Find 23 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAATTGTTGGTGTGACCAT+CGG	0.637223	contig514end:+13577	MsG0080048887.01.T01:intergenic
AGAGAGAGAGATTTGGATGG+AGG	0.401988	contig514end:-13822	MsG0080048888.01.T01:exon
AGTACCATAAGCCACAACGA+AGG	0.749652	contig514end:+13636	MsG0080048887.01.T01:intergenic
AGTATCAGCCGCCAACAGAG+TGG	0.696094	contig514end:+13888	MsG0080048887.01.T01:intergenic
AGTGGAGAAAGAACAATTGT+TGG	0.522246	contig514end:+13565	MsG0080048888.01.T01:intergenic
ATGAAGGTTGAGACGAGCAG+TGG	0.605089	contig514end:+13547	MsG0080048888.01.T01:intergenic
ATTGTTGGTGTGACCATCGG+TGG	0.626408	contig514end:+13580	MsG0080048887.01.T01:intergenic
ATTTGAAGTAACAAGTGGAA+TGG	0.557228	contig514end:+13603	MsG0080048888.01.T01:intergenic
ATTTGGATGGAGGTTTCAGA+GGG	0.487914	contig514end:-13812	MsG0080048888.01.T01:exon
CAAACCTTCGTTGTGGCTTA+TGG	0.270853	contig514end:-13640	MsG0080048888.01.T01:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAAAGGACGAATTTGAT+AGG	+	contig514end:10517-10536	MsG0080048888.01.T01:intergenic	30.0%
AATCCAATTTCTCACATATG+TGG	-	contig514end:13386-13405	MsG0080048888.01.T01:CDS	30.0%
AGATATTGTTGAAAAGGGTA+GGG	-	contig514end:11840-11859	MsG0080048888.01.T01:intron	30.0%
AGTAGTGAATTCATGCAATT+TGG	+	contig514end:12960-12979	MsG0080048888.01.T01:intergenic	30.0%
AGTGATTTAACTCTAATCTG+AGG	+	contig514end:11895-11914	MsG0080048888.01.T01:intergenic	30.0%
ATCAAAAGATATACTACCTC+TGG	+	contig514end:12433-12452	MsG0080048888.01.T01:intergenic	30.0%
ATGCATATGGTGATTTACAT+TGG	-	contig514end:12354-12373	MsG0080048888.01.T01:CDS	30.0%
ATTAAGAACACAAGTCCATA+TGG	+	contig514end:10836-10855	MsG0080048888.01.T01:intergenic	30.0%
ATTCCACATATGTGAGAAAT+TGG	+	contig514end:13392-13411	MsG0080048888.01.T01:intergenic	30.0%
ATTCGTCCTTTGATTCTATA+AGG	-	contig514end:10522-10541	MsG0080048888.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig514end	gene	10001	13991	10001	ID=MsG0080048888.01;
contig514end	mRNA	10001	13991	10001	ID=MsG0080048888.01.T01;Parent=MsG0080048888.01
contig514end	exon	10001	10512	10001	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end	CDS	10310	10512	10310	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	CDS	10654	10713	10654	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	exon	10654	10713	10654	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end	CDS	11105	11213	11105	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	exon	11105	11213	11105	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end	CDS	11297	11397	11297	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	exon	11297	11397	11297	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end	CDS	11953	12586	11953	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	exon	11953	12586	11953	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end	CDS	13074	13237	13074	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	exon	13074	13237	13074	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end	CDS	13362	13448	13362	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	exon	13362	13448	13362	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01
contig514end	CDS	13531	13828	13531	ID=MsG0080048888.01.T01.cds;Parent=MsG0080048888.01.T01
contig514end	exon	13531	13991	13531	ID=MsG0080048888.01.T01.exon;Parent=MsG0080048888.01.T01

Gene Sequence

>MsG0080048888.01.T01

ATGGAGGTTTCAGAGGGAGAATTTTCGAAGAAGCTAAGCATATACAAAGCAGCAAGAAGCATTAAAAAAAGAGACAACAGTTTATACAACGCACTTAGATCTATCTATCAAGATTCTGTTTTCGTTGGTGAAATCTCTCAATTATGGCCTCAACTTCCTCTTCTCGCAAACCTTCGTTGTGGCTTATGGTACTCTTCTAATTTCCATTCCACTTGTTACTTCAAATCCACCGATGGTCACACCAACAATTGTTCTTTCTCCACTGCTCGTCTCAACCTTCATGTGGCTCATCTTGCCGGTGCTCTCATATATGAGATTATGAATACTTCAAATATGTACATGACTCACTTTTGTCTTGCCATAATGAATAGACAAAAGGGCAAAACACAGAAAGGTGGTTGTATGATTGTTGATTCTACTAGAAAAGGAAAGCGTTTCCCAGACAGCATGTCCAAAACCATACCCATATGGACTTGTGTTCTTAATCGTGCAATTGCCCAATTTAAAAGAGATTTTCATATGGATGATGCTTCAGCACCACAATTGAGTGAGGACTCTGATTGGGATTGCTCTTTGCACCTACCACTTTGGGTTCCCCTAACAGAAAAGGCTTCAATTGAGGAGCACTTAGAGGAATGGACTCAACAATTGAAAGCAAGTGGAGCTGACATTGCTTCCCTCTCTGCTTCCTTGAAGAAACCATTACGTCCTCTATGGATTTCTCAGAAAACCGTCATATGGTTAAATGAAGTACCTCACCATGATTCTTGGGATTTCACACCAATCATACTTGTCTCTGCTTCTTCTTCGTCGAACGGTGTAAGCCAACACAACAAGACTAACTCCGAGTTTAGCTGGAATTATATACCAGGTGCAGGAGATGATGAAGAAAGTTGGTCTAGGGGTTTAACTCCACCTCTCTTTTGGAATCATGTTTATGATCTTATAAATTCAGGTCCTGATGTGTGTAACCAGAAGGTTGCAGATATTGTTGAAAAGGGTAGGGTACGCCGTGCTTATAGAGGAGAGAGTGCTCCTCAGATTAGAGTTAAATCACTTTCACATGAAGAACCGTCGCTGGCTTCTGATGTTTCAAATATTGAAGTTGACACCAAGTCTTTTGAAGATTCTGAAATTTCTTGGTTGGGTTCTACTAATTTGGCAGTTGGTGCATCTCAATTTGCTACAGATGCAGCCGATGTTGATTGCATATTGAATTGTGATTGTGAGTCCATCACTGTCTGTCTTCCCAGTTCAGAAGCATATCTGCATCTTCCAATTGTGAGTTCAAAGTTTGATCGCTTTTCCTTATTAAATAATATTCCTAAAGCTGTGAGCTTCGCCAAGTTCAACCTCAGTCTGGGAAAACGACTTCTGGTCTGTTGTAATGATGGGGAAGATATTAGTATATGTGTTTGCTTAGCAATTTTGATGTCACTATTTGATGAAAAAGGTACTTTTGATGATGGGAATTCCTTCAATCCAACACATGTCACTAAATGGGATATGAGAAGACGGCTTGTATTTGTCTGTAAGTTTGCGACAAATGCACGACCATGCAGAGGAAATTTGAGGCAAGTATTTAACTTTCTTATTGGCGGAAAATGCATTCTTCAAACGCAGGAGGACGGTGAGGACGGTGGCAGTGATGAGTGA

Protein sequence

>MsG0080048888.01.T01

MEVSEGEFSKKLSIYKAARSIKKRDNSLYNALRSIYQDSVFVGEISQLWPQLPLLANLRCGLWYSSNFHSTCYFKSTDGHTNNCSFSTARLNLHVAHLAGALIYEIMNTSNMYMTHFCLAIMNRQKGKTQKGGCMIVDSTRKGKRFPDSMSKTIPIWTCVLNRAIAQFKRDFHMDDASAPQLSEDSDWDCSLHLPLWVPLTEKASIEEHLEEWTQQLKASGADIASLSASLKKPLRPLWISQKTVIWLNEVPHHDSWDFTPIILVSASSSSNGVSQHNKTNSEFSWNYIPGAGDDEESWSRGLTPPLFWNHVYDLINSGPDVCNQKVADIVEKGRVRRAYRGESAPQIRVKSLSHEEPSLASDVSNIEVDTKSFEDSEISWLGSTNLAVGASQFATDAADVDCILNCDCESITVCLPSSEAYLHLPIVSSKFDRFSLLNNIPKAVSFAKFNLSLGKRLLVCCNDGEDISICVCLAILMSLFDEKGTFDDGNSFNPTHVTKWDMRRRLVFVCKFATNARPCRGNLRQVFNFLIGGKCILQTQEDGEDGGSDE*