AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042700.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042700.01.T01 MTR_8g019700 94.850 233 3 1 1 233 1 224 1.53e-157 436
MsG0880042700.01.T01 MTR_2g041190 83.262 233 29 2 1 233 1 223 1.34e-116 332
MsG0880042700.01.T01 MTR_1g069715 42.381 210 110 2 22 231 477 675 5.38e-46 162
MsG0880042700.01.T01 MTR_2g047875 38.627 233 121 4 4 233 3 216 1.84e-41 140
MsG0880042700.01.T01 MTR_7g097170 47.143 210 100 2 22 231 12 210 4.29e-41 140
MsG0880042700.01.T01 MTR_4g057565 28.302 212 149 3 22 231 16 226 5.98e-17 77.4
MsG0880042700.01.T01 MTR_2g100420 25.294 170 115 2 62 231 45 202 5.46e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042700.01.T01 AT2G06530 85.043 234 24 3 1 233 2 225 9.77e-124 350
MsG0880042700.01.T01 AT2G06530 89.268 205 20 2 30 233 1 204 1.22e-113 324
MsG0880042700.01.T01 AT1G03950 44.286 210 106 3 22 231 12 210 6.82e-52 167
MsG0880042700.01.T01 AT5G44560 37.826 230 133 2 4 233 3 222 1.09e-44 149
MsG0880042700.01.T01 AT5G44560 40.000 200 119 1 34 233 4 202 1.19e-42 143
MsG0880042700.01.T01 AT5G44560 40.000 185 102 1 4 188 3 178 5.66e-42 141
MsG0880042700.01.T01 AT5G44560 38.760 129 78 1 24 151 14 142 1.42e-23 93.2
MsG0880042700.01.T01 AT5G22950 28.505 214 148 3 22 231 16 228 4.64e-16 74.7
MsG0880042700.01.T01 AT1G17730 25.000 196 133 2 36 231 19 200 9.58e-13 65.5

Find 53 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTGATGCGTAGGAATATT+TGG 0.269014 8:+12860604 MsG0880042700.01.T01:exon
AGGTGTTGCTTTGAGAATTC+AGG 0.282686 8:+12859299 MsG0880042700.01.T01:CDS
AGCGCTATTGCAAACAAAAT+TGG 0.291580 8:+12858090 MsG0880042700.01.T01:five_prime_UTR
AAATACCATTTGTCCTTGTT+TGG 0.313748 8:-12858510 None:intergenic
GATTAATTGTAACCTTAGTT+TGG 0.324072 8:+12858032 None:intergenic
CTGCGCCAGCAGCAAAGAAC+AGG 0.338116 8:+12860500 MsG0880042700.01.T01:CDS
TGCTGCTGGCGCAGCGGTTG+AGG 0.345574 8:-12860491 None:intergenic
TTAGGGTGCTGTGAGGGTTA+TGG 0.358019 8:+12859212 MsG0880042700.01.T01:intron
GACAGAAGATCTTGTGAATC+AGG 0.371691 8:+12860000 MsG0880042700.01.T01:CDS
ATCATCATTGCCCGTTGGTT+CGG 0.375176 8:-12860533 None:intergenic
TTTGTAATTGATATATATCA+TGG 0.376542 8:-12860760 None:intergenic
GCAACCCTGTTCTTTGCTGC+TGG 0.393522 8:-12860505 None:intergenic
AAGCTTAAATCGCAACTTCA+AGG 0.395760 8:+12859279 MsG0880042700.01.T01:CDS
AAGCAATGGGTCAAATGAAT+AGG 0.409703 8:+12859846 MsG0880042700.01.T01:CDS
TGCATTATCTTCTGTAAAGA+AGG 0.410358 8:-12859881 None:intergenic
GAGCTTGTTTCTGAGGTAAT+GGG 0.417128 8:+12859932 MsG0880042700.01.T01:CDS
GCTATTGATGATGCTTTAGA+AGG 0.420879 8:+12859959 MsG0880042700.01.T01:CDS
GGAGCTTGTTTCTGAGGTAA+TGG 0.432786 8:+12859931 MsG0880042700.01.T01:CDS
AGCAAAGAACAGGGTTGCTC+AGG 0.453290 8:+12860510 MsG0880042700.01.T01:CDS
GTTGCTCAGGCCGAACCAAC+GGG 0.456495 8:+12860523 MsG0880042700.01.T01:CDS
GAATGCCAAACAAGGACAAA+TGG 0.480489 8:+12858505 MsG0880042700.01.T01:CDS
AAAGGAGTTACTAAAGCAAT+GGG 0.498174 8:+12859833 MsG0880042700.01.T01:CDS
ATGAACTATAATCCAAACTA+AGG 0.500638 8:-12858044 None:intergenic
TGGAATAGATGATGATCTAC+AGG 0.501443 8:+12860558 MsG0880042700.01.T01:CDS
TGAAAGGCAGAATGAGAAGA+TGG 0.503120 8:+12859910 MsG0880042700.01.T01:CDS
GCAGCGGTTGAGGTTGATGC+AGG 0.505074 8:-12860481 None:intergenic
AGATAATGCAAGAGTTTGAA+AGG 0.512294 8:+12859894 MsG0880042700.01.T01:CDS
GAAAGGAGTTACTAAAGCAA+TGG 0.516989 8:+12859832 MsG0880042700.01.T01:CDS
TTTAGAAGGTGATGAAGAAG+AGG 0.518323 8:+12859973 MsG0880042700.01.T01:CDS
GAACCAACGGGCAATGATGA+TGG 0.518414 8:+12860535 MsG0880042700.01.T01:CDS
GGTTGCTCAGGCCGAACCAA+CGG 0.520072 8:+12860522 MsG0880042700.01.T01:CDS
TGCTGTGAGGGTTATGGCCA+AGG 0.523944 8:+12859218 MsG0880042700.01.T01:CDS
GCGAGTTCTGATAAGATCCT+TGG 0.525743 8:-12859235 None:intergenic
GAAGATGGAGCTTGTTTCTG+AGG 0.529653 8:+12859925 MsG0880042700.01.T01:CDS
CTTAAATCTACTCAAGCGAT+GGG 0.543703 8:+12859800 MsG0880042700.01.T01:CDS
CCACCATCATCATTGCCCGT+TGG 0.548023 8:-12860538 None:intergenic
TGTTTGTTAGGGTGCTGTGA+GGG 0.550685 8:+12859206 MsG0880042700.01.T01:intron
AGGCTAGGTTAGATAACCTA+AGG 0.562667 8:+12860578 MsG0880042700.01.T01:CDS
AATCAGGTTCTTGATGAGAT+CGG 0.569717 8:+12860016 MsG0880042700.01.T01:CDS
CTAAGGAAAATGTGATGCGT+AGG 0.571602 8:+12860595 MsG0880042700.01.T01:exon
ACTTAAATCTACTCAAGCGA+TGG 0.571897 8:+12859799 MsG0880042700.01.T01:CDS
GTTCTTTGCTGCTGGCGCAG+CGG 0.591986 8:-12860497 None:intergenic
GGCAGTAGAAAGACTCCCGC+AGG 0.602338 8:+12858164 MsG0880042700.01.T01:CDS
TAAATCTACTCAAGCGATGG+GGG 0.603208 8:+12859802 MsG0880042700.01.T01:CDS
TGCGCCAGCAGCAAAGAACA+GGG 0.604491 8:+12860501 MsG0880042700.01.T01:CDS
GGAATTGCACAATAGAGCAT+AGG 0.608473 8:+12858111 MsG0880042700.01.T01:five_prime_UTR
ATTAAGAAGAATGCCAAACA+AGG 0.625704 8:+12858497 MsG0880042700.01.T01:CDS
TAGATGATGATCTACAGGCT+AGG 0.626372 8:+12860563 MsG0880042700.01.T01:CDS
CCAACGGGCAATGATGATGG+TGG 0.626681 8:+12860538 MsG0880042700.01.T01:CDS
TTGTTTGTTAGGGTGCTGTG+AGG 0.628453 8:+12859205 MsG0880042700.01.T01:intron
GAAATTGAAAGAGAAAGACA+AGG 0.645281 8:+12858440 MsG0880042700.01.T01:CDS
TTAAATCTACTCAAGCGATG+GGG 0.653699 8:+12859801 MsG0880042700.01.T01:CDS
CGGAATTGATATCAACTCTG+AGG 0.660467 8:+12860036 MsG0880042700.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAATAATTTAATAC+TGG + Chr8:12858269-12858288 MsG0880042700.01.T01:intron 10.0%
!! AAAAACAATAATTTAATACT+GGG + Chr8:12858270-12858289 MsG0880042700.01.T01:intron 10.0%
!!! AAAATTGATAATTACTTTTA+GGG + Chr8:12859020-12859039 MsG0880042700.01.T01:intron 10.0%
!! TTTGTAATTGATATATATCA+TGG - Chr8:12860763-12860782 None:intergenic 15.0%
!!! ATTTTCACTTTTAATCAAAT+TGG + Chr8:12858198-12858217 MsG0880042700.01.T01:intron 15.0%
!!! CAAAATTGATAATTACTTTT+AGG + Chr8:12859019-12859038 MsG0880042700.01.T01:intron 15.0%
!! AAACGAATATAATACAACAA+AGG - Chr8:12858849-12858868 None:intergenic 20.0%
!! AATAAGCTAAAAACATCTTA+AGG + Chr8:12860263-12860282 MsG0880042700.01.T01:intron 20.0%
!! GTTATTAAAGCAAATTTGTA+AGG + Chr8:12858952-12858971 MsG0880042700.01.T01:intron 20.0%
!! TAAAAATTGTGACTTTGATT+AGG + Chr8:12858320-12858339 MsG0880042700.01.T01:intron 20.0%
!!! AATAATAAACTAGTCCTTTT+TGG + Chr8:12860101-12860120 MsG0880042700.01.T01:intron 20.0%
!!! AATTGAGTTTTTTGGTTAAT+GGG + Chr8:12858343-12858362 MsG0880042700.01.T01:intron 20.0%
!!! ATAATAAACTAGTCCTTTTT+GGG + Chr8:12860102-12860121 MsG0880042700.01.T01:intron 20.0%
!!! ATATACGATCATTATTTTCA+TGG - Chr8:12860647-12860666 None:intergenic 20.0%
!!! ATTGTGGTTTTTAATATAGT+AGG + Chr8:12859123-12859142 MsG0880042700.01.T01:intron 20.0%
!!! TGAGAAATTTATTGCTTTTA+AGG + Chr8:12859100-12859119 MsG0880042700.01.T01:intron 20.0%
!!! TTGTGGTTTTTAATATAGTA+GGG + Chr8:12859124-12859143 MsG0880042700.01.T01:intron 20.0%
!!! TTGTTGTATTATATTCGTTT+TGG + Chr8:12858849-12858868 MsG0880042700.01.T01:intron 20.0%
! AAAATTTGAAGAATTACCTG+CGG - Chr8:12858183-12858202 None:intergenic 25.0%
! AGTTGCTAACATTACTTAAT+TGG - Chr8:12858751-12858770 None:intergenic 25.0%
! ATGAACTATAATCCAAACTA+AGG - Chr8:12858047-12858066 None:intergenic 25.0%
! CAAAAAACACTATAATTGCA+GGG - Chr8:12858619-12858638 None:intergenic 25.0%
! GTTGCTAACATTACTTAATT+GGG - Chr8:12858750-12858769 None:intergenic 25.0%
! TCAAATAAGTCAATTCAAAC+AGG + Chr8:12860354-12860373 MsG0880042700.01.T01:intron 25.0%
! TCAGTTTCAATATTCACTAA+CGG + Chr8:12858928-12858947 MsG0880042700.01.T01:intron 25.0%
! TTTCATGCTAATTCATACTA+TGG + Chr8:12859663-12859682 MsG0880042700.01.T01:intron 25.0%
!! AAATTTTCAAAGTTGAGCTA+CGG - Chr8:12859361-12859380 None:intergenic 25.0%
!! ATTAAGTTGTTTACCCAAAA+AGG - Chr8:12860118-12860137 None:intergenic 25.0%
!! CAATAGTTTTTGAATTTGCA+AGG - Chr8:12858679-12858698 None:intergenic 25.0%
!! TGTAAAACTTTTCAATCTGA+TGG - Chr8:12859260-12859279 None:intergenic 25.0%
!! TTCAATATGAGTTTTCTGTT+CGG + Chr8:12858143-12858162 MsG0880042700.01.T01:exon 25.0%
!!! GAATTGAGTTTTTTGGTTAA+TGG + Chr8:12858342-12858361 MsG0880042700.01.T01:intron 25.0%
!!! TGATTAGGAATTGAGTTTTT+TGG + Chr8:12858335-12858354 MsG0880042700.01.T01:intron 25.0%
!!! TTTAGTCACGTTTTATTTTC+AGG + Chr8:12860682-12860701 MsG0880042700.01.T01:three_prime_UTR 25.0%
!!! TTTATTGCTTTTAAGGATTG+TGG + Chr8:12859107-12859126 MsG0880042700.01.T01:intron 25.0%
!!! TTTCTGAGTTTTGTTTGTTA+GGG + Chr8:12859195-12859214 MsG0880042700.01.T01:intron 25.0%
AAAGGAGTTACTAAAGCAAT+GGG + Chr8:12859833-12859852 MsG0880042700.01.T01:CDS 30.0%
AAATACCATTTGTCCTTGTT+TGG - Chr8:12858513-12858532 None:intergenic 30.0%
AAATTTGAAGAATTACCTGC+GGG - Chr8:12858182-12858201 None:intergenic 30.0%
AACTTATCTGCTAAAATCCT+AGG - Chr8:12859402-12859421 None:intergenic 30.0%
AAGTGTCTACAATTAATCTC+AGG - Chr8:12859783-12859802 None:intergenic 30.0%
AGATAATGCAAGAGTTTGAA+AGG + Chr8:12859894-12859913 MsG0880042700.01.T01:CDS 30.0%
AGCTAAGTGCAATAGAAAAA+TGG - Chr8:12858573-12858592 None:intergenic 30.0%
ATTAAGAAGAATGCCAAACA+AGG + Chr8:12858497-12858516 MsG0880042700.01.T01:CDS 30.0%
CATACTATGGCAATATCATA+TGG + Chr8:12859676-12859695 MsG0880042700.01.T01:intron 30.0%
CCAAAAAACACTATAATTGC+AGG - Chr8:12858620-12858639 None:intergenic 30.0%
GAAATTGAAAGAGAAAGACA+AGG + Chr8:12858440-12858459 MsG0880042700.01.T01:CDS 30.0%
GAACAGGTATGTAATATGTT+TGG + Chr8:12859158-12859177 MsG0880042700.01.T01:intron 30.0%
GCATGAAAGTAATATATGCA+AGG - Chr8:12859651-12859670 None:intergenic 30.0%
GGTATGTAATATGTTTGGTT+TGG + Chr8:12859163-12859182 MsG0880042700.01.T01:intron 30.0%
TCAAACAAAAGAACTTACAC+AGG - Chr8:12858649-12858668 None:intergenic 30.0%
TGCATTATCTTCTGTAAAGA+AGG - Chr8:12859884-12859903 None:intergenic 30.0%
TTGAATGTAATCACATATGC+CGG - Chr8:12859532-12859551 None:intergenic 30.0%
! TTTGTTAACAGAGCTTTTGA+GGG + Chr8:12858385-12858404 MsG0880042700.01.T01:CDS 30.0%
! TTTTGTTAACAGAGCTTTTG+AGG + Chr8:12858384-12858403 MsG0880042700.01.T01:CDS 30.0%
!! AGCTTTTGAGGGAAAATAAA+AGG + Chr8:12858396-12858415 MsG0880042700.01.T01:CDS 30.0%
!! CTTATTTTCATAAGCTCTCT+AGG - Chr8:12860249-12860268 None:intergenic 30.0%
!!! CAGTTATTTTTTAATCTGCG+CGG + Chr8:12858776-12858795 MsG0880042700.01.T01:intron 30.0%
!!! CCTGCAATTATAGTGTTTTT+TGG + Chr8:12858617-12858636 MsG0880042700.01.T01:intron 30.0%
!!! GTTTCTGAGTTTTGTTTGTT+AGG + Chr8:12859194-12859213 MsG0880042700.01.T01:intron 30.0%
!!! TCACGTTTTATTTTCAGGTT+TGG + Chr8:12860687-12860706 MsG0880042700.01.T01:three_prime_UTR 30.0%
AAGCAATGGGTCAAATGAAT+AGG + Chr8:12859846-12859865 MsG0880042700.01.T01:CDS 35.0%
AAGCTTAAATCGCAACTTCA+AGG + Chr8:12859279-12859298 MsG0880042700.01.T01:CDS 35.0%
AATCAGGTTCTTGATGAGAT+CGG + Chr8:12860016-12860035 MsG0880042700.01.T01:CDS 35.0%
ACATCTTAAGGACATGTCAT+AGG + Chr8:12860275-12860294 MsG0880042700.01.T01:intron 35.0%
ACTTAAATCTACTCAAGCGA+TGG + Chr8:12859799-12859818 MsG0880042700.01.T01:CDS 35.0%
AGCGCTATTGCAAACAAAAT+TGG + Chr8:12858090-12858109 MsG0880042700.01.T01:five_prime_UTR 35.0%
ATGTGATGCGTAGGAATATT+TGG + Chr8:12860604-12860623 MsG0880042700.01.T01:exon 35.0%
CCACTAGTAATGAAAGAAGA+AGG - Chr8:12858545-12858564 None:intergenic 35.0%
CCTTCTTCTTTCATTACTAG+TGG + Chr8:12858542-12858561 MsG0880042700.01.T01:intron 35.0%
CTTAAATCTACTCAAGCGAT+GGG + Chr8:12859800-12859819 MsG0880042700.01.T01:CDS 35.0%
GAAAGGAGTTACTAAAGCAA+TGG + Chr8:12859832-12859851 MsG0880042700.01.T01:CDS 35.0%
GCCACACTGCATATTATATT+GGG - Chr8:12858728-12858747 None:intergenic 35.0%
TGGAATAGATGATGATCTAC+AGG + Chr8:12860558-12860577 MsG0880042700.01.T01:CDS 35.0%
TGTCTACAATTAATCTCAGG+AGG - Chr8:12859780-12859799 None:intergenic 35.0%
TTAAATCTACTCAAGCGATG+GGG + Chr8:12859801-12859820 MsG0880042700.01.T01:CDS 35.0%
TTAGTCTCTGACGTTATATG+CGG + Chr8:12858702-12858721 MsG0880042700.01.T01:intron 35.0%
TTTAGAAGGTGATGAAGAAG+AGG + Chr8:12859973-12859992 MsG0880042700.01.T01:CDS 35.0%
! GTAAGGAACTGTGTTGTTAA+GGG + Chr8:12858969-12858988 MsG0880042700.01.T01:intron 35.0%
! TGTAAGGAACTGTGTTGTTA+AGG + Chr8:12858968-12858987 MsG0880042700.01.T01:intron 35.0%
! TGTCTAACATGTGTTGGTAT+TGG + Chr8:12859503-12859522 MsG0880042700.01.T01:intron 35.0%
!! GCTATTGATGATGCTTTAGA+AGG + Chr8:12859959-12859978 MsG0880042700.01.T01:CDS 35.0%
!! GGATTTTAGCAGATAAGTTG+AGG + Chr8:12859403-12859422 MsG0880042700.01.T01:intron 35.0%
!! TAGGGTGTTGTTATTTGAAC+AGG + Chr8:12859142-12859161 MsG0880042700.01.T01:intron 35.0%
!! TTTTGGTTAATGGGTAGTCT+TGG + Chr8:12858352-12858371 MsG0880042700.01.T01:intron 35.0%
AACAGTCTCACAAGTGCTTA+TGG + Chr8:12860319-12860338 MsG0880042700.01.T01:intron 40.0%
ACTGATAGAGACATGGATAC+CGG - Chr8:12859604-12859623 None:intergenic 40.0%
AGGCTAGGTTAGATAACCTA+AGG + Chr8:12860578-12860597 MsG0880042700.01.T01:CDS 40.0%
CGGAATTGATATCAACTCTG+AGG + Chr8:12860036-12860055 MsG0880042700.01.T01:CDS 40.0%
CTAAGGAAAATGTGATGCGT+AGG + Chr8:12860595-12860614 MsG0880042700.01.T01:exon 40.0%
GAATGCCAAACAAGGACAAA+TGG + Chr8:12858505-12858524 MsG0880042700.01.T01:CDS 40.0%
GACAGAAGATCTTGTGAATC+AGG + Chr8:12860000-12860019 MsG0880042700.01.T01:CDS 40.0%
GCCCAATATAATATGCAGTG+TGG + Chr8:12858724-12858743 MsG0880042700.01.T01:intron 40.0%
GGAATTGCACAATAGAGCAT+AGG + Chr8:12858111-12858130 MsG0880042700.01.T01:five_prime_UTR 40.0%
GGCCACACTGCATATTATAT+TGG - Chr8:12858729-12858748 None:intergenic 40.0%
GTCAAGTGTCTAACATGTGT+TGG + Chr8:12859497-12859516 MsG0880042700.01.T01:intron 40.0%
TAAATCTACTCAAGCGATGG+GGG + Chr8:12859802-12859821 MsG0880042700.01.T01:CDS 40.0%
TAGATGATGATCTACAGGCT+AGG + Chr8:12860563-12860582 MsG0880042700.01.T01:CDS 40.0%
TGAAAGGCAGAATGAGAAGA+TGG + Chr8:12859910-12859929 MsG0880042700.01.T01:CDS 40.0%
TTCATGCTTATTGTGCTCCT+AGG + Chr8:12859382-12859401 MsG0880042700.01.T01:intron 40.0%
TTTCAAAGTTGAGCTACGGA+TGG - Chr8:12859357-12859376 None:intergenic 40.0%
! CTACGCATCACATTTTCCTT+AGG - Chr8:12860597-12860616 None:intergenic 40.0%
!! AGGTGTTGCTTTGAGAATTC+AGG + Chr8:12859299-12859318 MsG0880042700.01.T01:CDS 40.0%
!! ATGAAGCACTGATAGAGACA+TGG - Chr8:12859611-12859630 None:intergenic 40.0%
!! GAGCTTGTTTCTGAGGTAAT+GGG + Chr8:12859932-12859951 MsG0880042700.01.T01:CDS 40.0%
!! TGCAGCTTGTTTCTAAGCTA+GGG - Chr8:12860401-12860420 None:intergenic 40.0%
!! TTGCAGCTTGTTTCTAAGCT+AGG - Chr8:12860402-12860421 None:intergenic 40.0%
! ATCATCATTGCCCGTTGGTT+CGG - Chr8:12860536-12860555 None:intergenic 45.0%
! CATGTGTTGGTATTGGATGC+CGG + Chr8:12859510-12859529 MsG0880042700.01.T01:intron 45.0%
! GCGAGTTCTGATAAGATCCT+TGG - Chr8:12859238-12859257 None:intergenic 45.0%
!! GAAGATGGAGCTTGTTTCTG+AGG + Chr8:12859925-12859944 MsG0880042700.01.T01:CDS 45.0%
!! GCAGCTTGTTTCTAAGCTAG+GGG - Chr8:12860400-12860419 None:intergenic 45.0%
!! GGAGCTTGTTTCTGAGGTAA+TGG + Chr8:12859931-12859950 MsG0880042700.01.T01:CDS 45.0%
!! TGTTTGTTAGGGTGCTGTGA+GGG + Chr8:12859206-12859225 MsG0880042700.01.T01:intron 45.0%
!! TTGTTTGTTAGGGTGCTGTG+AGG + Chr8:12859205-12859224 MsG0880042700.01.T01:intron 45.0%
!! AAAAAAAATATAAATTAAAC+AGG - Chr8:12859715-12859734 None:intergenic 5.0%
AGCAAAGAACAGGGTTGCTC+AGG + Chr8:12860510-12860529 MsG0880042700.01.T01:CDS 50.0%
GAACCAACGGGCAATGATGA+TGG + Chr8:12860535-12860554 MsG0880042700.01.T01:CDS 50.0%
! GCACTGACACTTCTGATCGA+AGG + Chr8:12859471-12859490 MsG0880042700.01.T01:intron 50.0%
!! TTAGGGTGCTGTGAGGGTTA+TGG + Chr8:12859212-12859231 MsG0880042700.01.T01:intron 50.0%
CCACCATCATCATTGCCCGT+TGG - Chr8:12860541-12860560 None:intergenic 55.0%
CGACGTGTACGTGTCTTGTC+CGG + Chr8:12859582-12859601 MsG0880042700.01.T01:intron 55.0%
GCAACCCTGTTCTTTGCTGC+TGG - Chr8:12860508-12860527 None:intergenic 55.0%
GCGATGGGGGATGCTATGAA+AGG + Chr8:12859815-12859834 MsG0880042700.01.T01:CDS 55.0%
TGCGCCAGCAGCAAAGAACA+GGG + Chr8:12860501-12860520 MsG0880042700.01.T01:CDS 55.0%
TGCTGTGAGGGTTATGGCCA+AGG + Chr8:12859218-12859237 MsG0880042700.01.T01:CDS 55.0%
!! CCAACGGGCAATGATGATGG+TGG + Chr8:12860538-12860557 MsG0880042700.01.T01:CDS 55.0%
CTGCGCCAGCAGCAAAGAAC+AGG + Chr8:12860500-12860519 MsG0880042700.01.T01:CDS 60.0%
GGCAGTAGAAAGACTCCCGC+AGG + Chr8:12858164-12858183 MsG0880042700.01.T01:CDS 60.0%
GGTTGCTCAGGCCGAACCAA+CGG + Chr8:12860522-12860541 MsG0880042700.01.T01:CDS 60.0%
GTTCTTTGCTGCTGGCGCAG+CGG - Chr8:12860500-12860519 None:intergenic 60.0%
GTTGCTCAGGCCGAACCAAC+GGG + Chr8:12860523-12860542 MsG0880042700.01.T01:CDS 60.0%
!! GCAGCGGTTGAGGTTGATGC+AGG - Chr8:12860484-12860503 None:intergenic 60.0%
TGCTGCTGGCGCAGCGGTTG+AGG - Chr8:12860494-12860513 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 12858042 12860799 12858042 ID=MsG0880042700.01;Name=MsG0880042700.01
Chr8 mRNA 12858042 12860799 12858042 ID=MsG0880042700.01.T01;Parent=MsG0880042700.01;Name=MsG0880042700.01.T01;_AED=0.38;_eAED=0.40;_QI=107|0.75|0.8|1|0.75|0.6|5|190|233
Chr8 exon 12858042 12858185 12858042 ID=MsG0880042700.01.T01:exon:36740;Parent=MsG0880042700.01.T01
Chr8 exon 12858369 12858526 12858369 ID=MsG0880042700.01.T01:exon:36741;Parent=MsG0880042700.01.T01
Chr8 exon 12859216 12859320 12859216 ID=MsG0880042700.01.T01:exon:36742;Parent=MsG0880042700.01.T01
Chr8 exon 12859797 12860057 12859797 ID=MsG0880042700.01.T01:exon:36743;Parent=MsG0880042700.01.T01
Chr8 exon 12860469 12860799 12860469 ID=MsG0880042700.01.T01:exon:36744;Parent=MsG0880042700.01.T01
Chr8 five_prime_UTR 12858042 12858148 12858042 ID=MsG0880042700.01.T01:five_prime_utr;Parent=MsG0880042700.01.T01
Chr8 CDS 12858149 12858185 12858149 ID=MsG0880042700.01.T01:cds;Parent=MsG0880042700.01.T01
Chr8 CDS 12858369 12858526 12858369 ID=MsG0880042700.01.T01:cds;Parent=MsG0880042700.01.T01
Chr8 CDS 12859216 12859320 12859216 ID=MsG0880042700.01.T01:cds;Parent=MsG0880042700.01.T01
Chr8 CDS 12859797 12860057 12859797 ID=MsG0880042700.01.T01:cds;Parent=MsG0880042700.01.T01
Chr8 CDS 12860469 12860609 12860469 ID=MsG0880042700.01.T01:cds;Parent=MsG0880042700.01.T01
Chr8 three_prime_UTR 12860610 12860799 12860610 ID=MsG0880042700.01.T01:three_prime_utr;Parent=MsG0880042700.01.T01
Gene Sequence

>MsG0880042700.01.T01

ATGAGTTTTCTGTTCGGCAGTAGAAAGACTCCCGCAGTCTTGGTTTTTGTGATTTTGTTAACAGAGCTTTTGAGGGAAAATAAAAGGATGTTAGATAAGTCTATTAGAGAAATTGAAAGAGAAAGACAAGGATTGCAGTCTCAAGAAAAGAAATTGATTGTAGAGATTAAGAAGAATGCCAAACAAGGACAAATGGGTGCTGTGAGGGTTATGGCCAAGGATCTTATCAGAACTCGCCATCAGATTGAAAAGTTTTACAAGCTTAAATCGCAACTTCAAGGTGTTGCTTTGAGAATTCAGACACTTAAATCTACTCAAGCGATGGGGGATGCTATGAAAGGAGTTACTAAAGCAATGGGTCAAATGAATAGGCAGATGAATTTGCCTTCTTTACAGAAGATAATGCAAGAGTTTGAAAGGCAGAATGAGAAGATGGAGCTTGTTTCTGAGGTAATGGGAGATGCTATTGATGATGCTTTAGAAGGTGATGAAGAAGAGGAAGAGACAGAAGATCTTGTGAATCAGGTTCTTGATGAGATCGGAATTGATATCAACTCTGAGCTTTTGAATGCACCTGCATCAACCTCAACCGCTGCGCCAGCAGCAAAGAACAGGGTTGCTCAGGCCGAACCAACGGGCAATGATGATGGTGGAATAGATGATGATCTACAGGCTAGGTTAGATAACCTAAGGAAAATGTGA

Protein sequence

>MsG0880042700.01.T01

MSFLFGSRKTPAVLVFVILLTELLRENKRMLDKSIREIERERQGLQSQEKKLIVEIKKNAKQGQMGAVRVMAKDLIRTRHQIEKFYKLKSQLQGVALRIQTLKSTQAMGDAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMGDAIDDALEGDEEEEETEDLVNQVLDEIGIDINSELLNAPASTSTAAPAAKNRVAQAEPTGNDDGGIDDDLQARLDNLRKM*