AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003189.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003189.01.T01 MTR_1g055300 77.444 266 27 2 1 233 1 266 2.56e-145 408
MsG0180003189.01.T01 MTR_1g055300 74.667 225 24 2 1 192 1 225 1.72e-116 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003189.01.T01 AT5G06410 46.009 213 75 4 57 236 47 252 2.30e-57 183

Find 64 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGACTATTTCCATATTT+TGG 0.094490 1:-58131256 MsG0180003189.01.T01:CDS
GTTACCTCTGCTAATAATTC+TGG 0.226330 1:+58129739 None:intergenic
CGTTGCTGTTATGTTTGTTC+TGG 0.270616 1:-58128285 MsG0180003189.01.T01:three_prime_UTR
AATTACGATTATTCTTCATT+TGG 0.301008 1:-58131422 MsG0180003189.01.T01:CDS
GAAACTTACAATCCAAAATA+TGG 0.315043 1:+58131244 None:intergenic
TCCTGCAGATTATGGAAATC+AGG 0.317640 1:-58128997 MsG0180003189.01.T01:intron
CTTCTTCAAAGTCCCGCTTT+TGG 0.322648 1:+58128742 None:intergenic
ATTTGTTAGTTGAAGCTTGA+TGG 0.324638 1:-58129796 MsG0180003189.01.T01:intron
TTGATTATCATTTGTATCAA+TGG 0.329464 1:-58127958 MsG0180003189.01.T01:three_prime_UTR
TCAAATGGTTATTTACTCAT+AGG 0.341200 1:+58127977 None:intergenic
ATTACGATTATTCTTCATTT+GGG 0.344545 1:-58131421 MsG0180003189.01.T01:CDS
ACATTCAAAACATTCATATC+TGG 0.345173 1:-58127718 MsG0180003189.01.T01:three_prime_UTR
GAAGAAGGTTGAAAGAGGTT+TGG 0.374076 1:+58131559 None:intergenic
TCCAAGATGGAGCTATTCCT+TGG 0.375588 1:-58128070 MsG0180003189.01.T01:three_prime_UTR
CCAAGATGGAGCTATTCCTT+GGG 0.394723 1:-58128069 MsG0180003189.01.T01:three_prime_UTR
ATAGTCATTTGAACATCAAC+AGG 0.402520 1:+58131269 None:intergenic
CGCTGATGCTTTCCAAAAGC+GGG 0.419435 1:-58128754 MsG0180003189.01.T01:CDS
ACGTGCATAGCAAAGCAATA+AGG 0.440004 1:+58127934 None:intergenic
GGAGATTGAGGTTTAAGATA+AGG 0.453740 1:+58131488 None:intergenic
TGAATACGATACGGTGTAAA+GGG 0.454165 1:+58131458 None:intergenic
CTATTCCTTGGGGCGGCAAA+TGG 0.458555 1:-58128058 MsG0180003189.01.T01:three_prime_UTR
TTGTAAAGAAGCTTTGATAC+AGG 0.464158 1:-58128668 MsG0180003189.01.T01:intron
TGCAGGAGAAAATGCAAAGT+TGG 0.478471 1:-58128788 MsG0180003189.01.T01:CDS
TGTTCGTATAAAGTTGAAGA+AGG 0.490091 1:+58131544 None:intergenic
CCCAAGGAATAGCTCCATCT+TGG 0.492080 1:+58128069 None:intergenic
ACGCTGAGGAATCGAAGTTA+AGG 0.496954 1:+58131517 None:intergenic
TTATTATACTCGTGTAATTG+AGG 0.500529 1:-58128694 MsG0180003189.01.T01:CDS
TGATACAAATGATAATCAAA+TGG 0.502147 1:+58127962 None:intergenic
TTGCTTTGCTATGCACGTAT+CGG 0.503707 1:-58127929 MsG0180003189.01.T01:three_prime_UTR
ATGAATACGATACGGTGTAA+AGG 0.506971 1:+58131457 None:intergenic
CTTGAATGAGTGTTCATGCT+AGG 0.517779 1:+58127867 None:intergenic
TACGGTGTAAAGGGTGGTGA+TGG 0.528147 1:+58131467 None:intergenic
AAGTTGAAGAAGGTTGAAAG+AGG 0.529141 1:+58131554 None:intergenic
AACAAGAAAGGTGCTGATTG+AGG 0.532545 1:+58131317 None:intergenic
CCTGCAGATTATGGAAATCA+GGG 0.533197 1:-58128996 MsG0180003189.01.T01:intron
AGAGTTAGTTGCTTCTTCAA+CGG 0.538397 1:+58128970 None:intergenic
AAGGGTGGTGATGGAGATTG+AGG 0.538552 1:+58131476 None:intergenic
CACGACTGGCAGAACAAGAA+AGG 0.538953 1:+58131305 None:intergenic
GTTGAATGCAACGACACGAC+TGG 0.541819 1:+58131291 None:intergenic
ATGTAAATTGCTCTTGACAA+AGG 0.547068 1:+58130071 None:intergenic
ATTTGCTGATTGCAATGAAG+TGG 0.572176 1:-58128000 MsG0180003189.01.T01:three_prime_UTR
ATCTACCATTTGCCGCCCCA+AGG 0.580412 1:+58128053 None:intergenic
GTTGGTTGAAAATTGTGCGC+AGG 0.587669 1:+58131362 None:intergenic
TCGCTGATGCTTTCCAAAAG+CGG 0.587877 1:-58128755 MsG0180003189.01.T01:CDS
AGATCCAGAATTATTAGCAG+AGG 0.590429 1:-58129743 MsG0180003189.01.T01:intron
GTTGGTGTAGGCTTCCAAGA+TGG 0.591331 1:-58128083 MsG0180003189.01.T01:intron
TTTGTCAAGAGCAATTTACA+TGG 0.593720 1:-58130069 MsG0180003189.01.T01:intron
CAAGTGTTGCAAATTTACCT+AGG 0.597718 1:+58127776 None:intergenic
TGTTGCTTTGTTACATGCAG+CGG 0.599422 1:+58127843 None:intergenic
GAGTGTTCATGCTAGGGATG+TGG 0.599756 1:+58127874 None:intergenic
TTAGTTGAAGCTTGATGGAG+TGG 0.608425 1:-58129791 MsG0180003189.01.T01:intron
TATAGATTATGAATACGATA+CGG 0.621521 1:+58131449 None:intergenic
GTTGCAAATTTACCTAGGCG+AGG 0.622783 1:+58127781 None:intergenic
TTTGAATCAGATTCGCTCTG+AGG 0.623474 1:-58128942 MsG0180003189.01.T01:intron
CAAGATGGAGCTATTCCTTG+GGG 0.624618 1:-58128068 MsG0180003189.01.T01:three_prime_UTR
GCGTGACAATTCCAGCATGT+TGG 0.624693 1:+58131344 None:intergenic
TTGAATGAGTGTTCATGCTA+GGG 0.625900 1:+58127868 None:intergenic
GATGGAGCTATTCCTTGGGG+CGG 0.646333 1:-58128065 MsG0180003189.01.T01:three_prime_UTR
TGATGGAGTGGAAGTTGATG+AGG 0.658748 1:-58129779 MsG0180003189.01.T01:CDS
TTGCTGAGTATGAACTACGA+AGG 0.669956 1:-58128028 MsG0180003189.01.T01:three_prime_UTR
CATGCTAGGGATGTGGCTCG+TGG 0.672526 1:+58127881 None:intergenic
ATACGATACGGTGTAAAGGG+TGG 0.708926 1:+58131461 None:intergenic
TGAAGAAGCAACTAACTCTG+AGG 0.709047 1:-58128966 MsG0180003189.01.T01:CDS
AGATAAGGTGATACACGCTG+AGG 0.726900 1:+58131503 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAATATAATACAAAAATAA+AGG + Chr1:58131165-58131184 None:intergenic 10.0%
!!! TTTCTTTTAAATTTAATACA+GGG - Chr1:58128846-58128865 MsG0180003189.01.T01:intron 10.0%
!!! TTTTCTTTTAAATTTAATAC+AGG - Chr1:58128845-58128864 MsG0180003189.01.T01:intron 10.0%
!! AATAAACAAATTAATAACCT+AGG + Chr1:58128240-58128259 None:intergenic 15.0%
!! AATTTAGAAACAAATGATAA+TGG - Chr1:58130748-58130767 MsG0180003189.01.T01:intron 15.0%
!! ATTAAAATATAGAGACTTAA+TGG + Chr1:58128468-58128487 None:intergenic 15.0%
!! ATTTAGAAACAAATGATAAT+GGG - Chr1:58130749-58130768 MsG0180003189.01.T01:intron 15.0%
!! TTTCTTTCTCTTAAATAAAT+TGG - Chr1:58130095-58130114 MsG0180003189.01.T01:CDS 15.0%
!!! GTAATGTAATAATTTTCTTT+TGG - Chr1:58130628-58130647 MsG0180003189.01.T01:intron 15.0%
!!! TTTATTGGTTGATAAATAAT+GGG - Chr1:58128119-58128138 MsG0180003189.01.T01:intron 15.0%
!!! TTTTATTGGTTGATAAATAA+TGG - Chr1:58128118-58128137 MsG0180003189.01.T01:intron 15.0%
!! AATTACGATTATTCTTCATT+TGG - Chr1:58127852-58127871 MsG0180003189.01.T01:three_prime_UTR 20.0%
!! AATTTAATTGCTAAGGATAA+TGG - Chr1:58130152-58130171 MsG0180003189.01.T01:intron 20.0%
!! AGTCCTTCATTAATAATATT+AGG + Chr1:58128543-58128562 None:intergenic 20.0%
!! ATAAAAAGTAAAGAAAGTGA+TGG + Chr1:58129412-58129431 None:intergenic 20.0%
!! ATTACGATTATTCTTCATTT+GGG - Chr1:58127853-58127872 MsG0180003189.01.T01:three_prime_UTR 20.0%
!! ATTTGTTTGTTTACTTCAAT+TGG - Chr1:58129110-58129129 MsG0180003189.01.T01:intron 20.0%
!! GTATGTAATAAATAGAAGAA+AGG + Chr1:58128988-58129007 None:intergenic 20.0%
!! GTCCTTCATTAATAATATTA+GGG + Chr1:58128542-58128561 None:intergenic 20.0%
!! GTTTGTTTATATTTAATCCT+AGG - Chr1:58128220-58128239 MsG0180003189.01.T01:intron 20.0%
!! TAATAATATTAGGGACTAAA+TGG + Chr1:58128533-58128552 None:intergenic 20.0%
!! TACAAAAATAAAGGAATTTG+AGG + Chr1:58131156-58131175 None:intergenic 20.0%
!! TATAGATTATGAATACGATA+CGG + Chr1:58127828-58127847 None:intergenic 20.0%
!! TGATACAAATGATAATCAAA+TGG + Chr1:58131315-58131334 None:intergenic 20.0%
!! TTGATTATCATTTGTATCAA+TGG - Chr1:58131316-58131335 MsG0180003189.01.T01:CDS 20.0%
!! TTTCACATTGTAAACAAATT+TGG + Chr1:58129570-58129589 None:intergenic 20.0%
!!! AAATATGGTTTAAAGTTGTT+GGG - Chr1:58128744-58128763 MsG0180003189.01.T01:CDS 20.0%
!!! AAATGACTATTTCCATATTT+TGG - Chr1:58128018-58128037 MsG0180003189.01.T01:three_prime_UTR 20.0%
!!! AGGAAATTTTAATAACAGAA+AGG + Chr1:58130261-58130280 None:intergenic 20.0%
!!! ATATTTTTTATATCTGTCTC+TGG + Chr1:58129784-58129803 None:intergenic 20.0%
!!! ATTTTTGATTCTACAAAGTA+TGG + Chr1:58130666-58130685 None:intergenic 20.0%
!!! CACAAAGTTTTGATTTTTAT+TGG - Chr1:58128104-58128123 MsG0180003189.01.T01:intron 20.0%
!!! CTTGAAAATTCTATTTTGTA+AGG - Chr1:58130359-58130378 MsG0180003189.01.T01:intron 20.0%
!!! GTATTATATTGATGATATGT+TGG - Chr1:58131173-58131192 MsG0180003189.01.T01:intron 20.0%
!!! TTATTTTGTTTTTGTTCTTC+TGG - Chr1:58128055-58128074 MsG0180003189.01.T01:three_prime_UTR 20.0%
! AAGAGAAAGAAAATAAAAGC+TGG + Chr1:58130087-58130106 None:intergenic 25.0%
! AAGCTTCAACTAACAAATTA+TGG + Chr1:58129476-58129495 None:intergenic 25.0%
! AATATCTCTGTAAAATGTGT+GGG - Chr1:58130843-58130862 MsG0180003189.01.T01:intron 25.0%
! ACATTCAAAACATTCATATC+TGG - Chr1:58131556-58131575 MsG0180003189.01.T01:CDS 25.0%
! AGAGAAAGAAAATAAAAGCT+GGG + Chr1:58130086-58130105 None:intergenic 25.0%
! ATTGTTAATCATCATTTCTC+AGG - Chr1:58130962-58130981 MsG0180003189.01.T01:intron 25.0%
! CCAATTGCATAAAAATATGT+AGG + Chr1:58130798-58130817 None:intergenic 25.0%
! CTTGAAATATTCATACTCTT+GGG + Chr1:58128389-58128408 None:intergenic 25.0%
! GAAACTTACAATCCAAAATA+TGG + Chr1:58128033-58128052 None:intergenic 25.0%
! GATTCAAAATTCAAAAGTAG+TGG + Chr1:58131100-58131119 None:intergenic 25.0%
! GGTGAAACTTGATTATTTAT+AGG - Chr1:58128189-58128208 MsG0180003189.01.T01:intron 25.0%
! GTCCCTAATATTATTAATGA+AGG - Chr1:58128537-58128556 MsG0180003189.01.T01:intron 25.0%
! GTTACTGCAATTGATTATAT+TGG - Chr1:58129848-58129867 MsG0180003189.01.T01:intron 25.0%
! TAATATCTCTGTAAAATGTG+TGG - Chr1:58130842-58130861 MsG0180003189.01.T01:intron 25.0%
! TCAAATGGTTATTTACTCAT+AGG + Chr1:58131300-58131319 None:intergenic 25.0%
! TCTTGAAATATTCATACTCT+TGG + Chr1:58128390-58128409 None:intergenic 25.0%
! TGAACATATGAAAAGTTCAA+TGG - Chr1:58129297-58129316 MsG0180003189.01.T01:intron 25.0%
! TTAAAATTTCCTGCAGATTA+TGG - Chr1:58130269-58130288 MsG0180003189.01.T01:intron 25.0%
! TTAATCACTTACGATCAATT+TGG - Chr1:58128483-58128502 MsG0180003189.01.T01:intron 25.0%
! TTATTATACTCGTGTAATTG+AGG - Chr1:58130580-58130599 MsG0180003189.01.T01:intron 25.0%
! TTGAAATGCTTATAATCTCA+AGG - Chr1:58128597-58128616 MsG0180003189.01.T01:intron 25.0%
! TTGACAATTTAATAGAGTCA+AGG + Chr1:58128417-58128436 None:intergenic 25.0%
! TTTAAATTTAATACAGGGAG+AGG - Chr1:58128851-58128870 MsG0180003189.01.T01:intron 25.0%
! TTTCGATTGAACATAAACAT+TGG + Chr1:58130007-58130026 None:intergenic 25.0%
! TTTGTTTACTTCAATTGGTT+AGG - Chr1:58129115-58129134 MsG0180003189.01.T01:intron 25.0%
!! ACTGAACTGATTTAAAACAA+GGG + Chr1:58129706-58129725 None:intergenic 25.0%
!! CAAATATGGTTTAAAGTTGT+TGG - Chr1:58128743-58128762 MsG0180003189.01.T01:CDS 25.0%
!! GTTGAATGTGTTATGTTTTT+CGG - Chr1:58129074-58129093 MsG0180003189.01.T01:intron 25.0%
!! TACTGAACTGATTTAAAACA+AGG + Chr1:58129707-58129726 None:intergenic 25.0%
!! TGATGAGGAAATTTTTCATT+TGG - Chr1:58129348-58129367 MsG0180003189.01.T01:intron 25.0%
!!! AAATTGATGATGCATAGTTA+CGG - Chr1:58129253-58129272 MsG0180003189.01.T01:intron 25.0%
!!! AGCATGTTTTTAAATGGAAA+AGG + Chr1:58129911-58129930 None:intergenic 25.0%
!!! CCTACATATTTTTATGCAAT+TGG - Chr1:58130795-58130814 MsG0180003189.01.T01:intron 25.0%
!!! GATTTTGATGAAGTGAAAAA+AGG + Chr1:58130064-58130083 None:intergenic 25.0%
!!! TACATTTTATTTTGAAAGCC+TGG + Chr1:58131026-58131045 None:intergenic 25.0%
!!! TGAGAAAGCATGTTTTTAAA+TGG + Chr1:58129917-58129936 None:intergenic 25.0%
AAAATTAAATGTGTCGCAAC+AGG - Chr1:58129382-58129401 MsG0180003189.01.T01:intron 30.0%
AAAGAAACTACATCCTGATT+TGG - Chr1:58128924-58128943 MsG0180003189.01.T01:intron 30.0%
AAGACAGTTCACAAAGTTAT+TGG + Chr1:58130883-58130902 None:intergenic 30.0%
AATAACAGAAAGGATTAGAG+TGG + Chr1:58130251-58130270 None:intergenic 30.0%
AATGTGTGGGATAAAATGTT+TGG - Chr1:58130856-58130875 MsG0180003189.01.T01:intron 30.0%
ACACAAATCAAGGACAAATT+TGG - Chr1:58128639-58128658 MsG0180003189.01.T01:intron 30.0%
ATAGTAAGTGGCTAAATACA+AGG + Chr1:58128510-58128529 None:intergenic 30.0%
ATAGTCATTTGAACATCAAC+AGG + Chr1:58128008-58128027 None:intergenic 30.0%
ATGTAAATTGCTCTTGACAA+AGG + Chr1:58129206-58129225 None:intergenic 30.0%
ATGTTCAATCGAAATGAAAG+TGG - Chr1:58130013-58130032 MsG0180003189.01.T01:intron 30.0%
ATTCTACAAAGTATGGTGTA+AGG + Chr1:58130659-58130678 None:intergenic 30.0%
GAAAAATTTCCTCATCATCA+CGG + Chr1:58129345-58129364 None:intergenic 30.0%
TCGAAAAGAATTGAAGCTTA+AGG - Chr1:58130693-58130712 MsG0180003189.01.T01:intron 30.0%
TGCATCATCAATTTGAATCT+TGG + Chr1:58129247-58129266 None:intergenic 30.0%
TGTTCGTATAAAGTTGAAGA+AGG + Chr1:58127733-58127752 None:intergenic 30.0%
TTATATCCATACAATTGCGA+TGG - Chr1:58129821-58129840 MsG0180003189.01.T01:intron 30.0%
TTTGTCAAGAGCAATTTACA+TGG - Chr1:58129205-58129224 MsG0180003189.01.T01:intron 30.0%
! AAGCTCATAGTGTTTTACTT+AGG - Chr1:58128164-58128183 MsG0180003189.01.T01:intron 30.0%
! ATTTGTTAGTTGAAGCTTGA+TGG - Chr1:58129478-58129497 MsG0180003189.01.T01:intron 30.0%
! TATTGATGATATGTTGGTGT+AGG - Chr1:58131179-58131198 MsG0180003189.01.T01:intron 30.0%
! TCATAGTGTTTTACTTAGGA+AGG - Chr1:58128168-58128187 MsG0180003189.01.T01:intron 30.0%
! TTGATCCTACATGTGTTTTT+CGG - Chr1:58131518-58131537 MsG0180003189.01.T01:CDS 30.0%
! TTGTAAAGAAGCTTTGATAC+AGG - Chr1:58130606-58130625 MsG0180003189.01.T01:intron 30.0%
!! AATTTGTCCTTGATTTGTGT+AGG + Chr1:58128639-58128658 None:intergenic 30.0%
!! ACTCTGGAATTTAATTGCTA+AGG - Chr1:58130145-58130164 MsG0180003189.01.T01:intron 30.0%
!! AGAAACAAATGATAATGGGA+TGG - Chr1:58130753-58130772 MsG0180003189.01.T01:intron 30.0%
!! CTTTTTGTTTCGAAGATTTG+CGG - Chr1:58129036-58129055 MsG0180003189.01.T01:intron 30.0%
!! TATATAAGTAGAAGCATCAG+TGG + Chr1:58131061-58131080 None:intergenic 30.0%
AAAAGAGACATGACAGACAT+CGG + Chr1:58129013-58129032 None:intergenic 35.0%
AAGTTGAAGAAGGTTGAAAG+AGG + Chr1:58127723-58127742 None:intergenic 35.0%
AATCTCAGGTTTGTCTTCTT+AGG - Chr1:58128956-58128975 MsG0180003189.01.T01:CDS 35.0%
AATTATGGCGCAACATTACT+TGG + Chr1:58129461-58129480 None:intergenic 35.0%
ACCATATTTGAAAGTCGCAA+TGG + Chr1:58128733-58128752 None:intergenic 35.0%
AGAGTTAGTTGCTTCTTCAA+CGG + Chr1:58130307-58130326 None:intergenic 35.0%
AGATCATCCTACACAAATCA+AGG - Chr1:58128629-58128648 MsG0180003189.01.T01:intron 35.0%
AGATCCAGAATTATTAGCAG+AGG - Chr1:58129531-58129550 MsG0180003189.01.T01:intron 35.0%
AGTACAATTTGACAGAGTCA+AGG - Chr1:58128569-58128588 MsG0180003189.01.T01:intron 35.0%
ATCTCAGGTTTGTCTTCTTA+GGG - Chr1:58128957-58128976 MsG0180003189.01.T01:CDS 35.0%
ATGAATACGATACGGTGTAA+AGG + Chr1:58127820-58127839 None:intergenic 35.0%
CAAAATGTCTTGAGATTTGC+TGG - Chr1:58129667-58129686 MsG0180003189.01.T01:intron 35.0%
CAAATCAAGGACAAATTTGG+TGG - Chr1:58128642-58128661 MsG0180003189.01.T01:intron 35.0%
CAGTAGTTTACCAAAATCCA+GGG - Chr1:58129722-58129741 MsG0180003189.01.T01:intron 35.0%
GTATTTCACTCTTCTACACA+AGG - Chr1:58130213-58130232 MsG0180003189.01.T01:intron 35.0%
GTTACCTCTGCTAATAATTC+TGG + Chr1:58129538-58129557 None:intergenic 35.0%
TCAGTAGTTTACCAAAATCC+AGG - Chr1:58129721-58129740 MsG0180003189.01.T01:intron 35.0%
TCCATTGCGACTTTCAAATA+TGG - Chr1:58128729-58128748 MsG0180003189.01.T01:CDS 35.0%
TGAATACGATACGGTGTAAA+GGG + Chr1:58127819-58127838 None:intergenic 35.0%
TGTGTAGGATGATCTCAAAT+TGG + Chr1:58128624-58128643 None:intergenic 35.0%
TTGAATGAGTGTTCATGCTA+GGG + Chr1:58131409-58131428 None:intergenic 35.0%
! ACAATTTTCAACCAACATGC+TGG - Chr1:58127919-58127938 MsG0180003189.01.T01:three_prime_UTR 35.0%
! ATGGTTTAAAGTTGTTGGGA+TGG - Chr1:58128748-58128767 MsG0180003189.01.T01:CDS 35.0%
! ATTTGCTGATTGCAATGAAG+TGG - Chr1:58131274-58131293 MsG0180003189.01.T01:CDS 35.0%
! CAAGAACAATCACAGTTTTC+TGG - Chr1:58129630-58129649 MsG0180003189.01.T01:intron 35.0%
! CAAGTGTTGCAAATTTACCT+AGG + Chr1:58131501-58131520 None:intergenic 35.0%
! CAGAGTCCTATTTTATGTTC+GGG + Chr1:58130131-58130150 None:intergenic 35.0%
! CCAGAGTCCTATTTTATGTT+CGG + Chr1:58130132-58130151 None:intergenic 35.0%
! CTATTTTATGTTCGGGCAAA+AGG + Chr1:58130124-58130143 None:intergenic 35.0%
! CTTTTGCCCGAACATAAAAT+AGG - Chr1:58130122-58130141 MsG0180003189.01.T01:CDS 35.0%
! GATTTTGAATGCACCAAATC+AGG + Chr1:58128940-58128959 None:intergenic 35.0%
! GGAGATTGAGGTTTAAGATA+AGG + Chr1:58127789-58127808 None:intergenic 35.0%
! TGTGAACTGTCTTTTGCTTT+TGG - Chr1:58130890-58130909 MsG0180003189.01.T01:intron 35.0%
! TTTGGTGCATTCAAAATCTC+AGG - Chr1:58128942-58128961 MsG0180003189.01.T01:intron 35.0%
!!! GTTTTTGTTCTTCTGGTTCT+GGG - Chr1:58128062-58128081 MsG0180003189.01.T01:three_prime_UTR 35.0%
!!! TGTTTTTGTTCTTCTGGTTC+TGG - Chr1:58128061-58128080 MsG0180003189.01.T01:three_prime_UTR 35.0%
AAAGAGACATGACAGACATC+GGG + Chr1:58129012-58129031 None:intergenic 40.0%
AACAGAAAGGATTAGAGTGG+AGG + Chr1:58130248-58130267 None:intergenic 40.0%
ACAAAGCCATCGCAATTGTA+TGG + Chr1:58129830-58129849 None:intergenic 40.0%
ACGTGCATAGCAAAGCAATA+AGG + Chr1:58131343-58131362 None:intergenic 40.0%
CCGAACATAAAATAGGACTC+TGG - Chr1:58130129-58130148 MsG0180003189.01.T01:CDS 40.0%
CCTGCAGATTATGGAAATCA+GGG - Chr1:58130278-58130297 MsG0180003189.01.T01:intron 40.0%
CTTGAATGAGTGTTCATGCT+AGG + Chr1:58131410-58131429 None:intergenic 40.0%
GAAAGTGGCATTTCTGTTCT+AGG - Chr1:58130028-58130047 MsG0180003189.01.T01:intron 40.0%
GAAGAAGGTTGAAAGAGGTT+TGG + Chr1:58127718-58127737 None:intergenic 40.0%
GCATCTGGATGAACATTCAA+AGG + Chr1:58130469-58130488 None:intergenic 40.0%
GGGACTAAATGGATAGTAAG+TGG + Chr1:58128522-58128541 None:intergenic 40.0%
TCCTGCAGATTATGGAAATC+AGG - Chr1:58130277-58130296 MsG0180003189.01.T01:intron 40.0%
TCTCAGGTTTGTCTTCTTAG+GGG - Chr1:58128958-58128977 MsG0180003189.01.T01:CDS 40.0%
TGAAGAAGCAACTAACTCTG+AGG - Chr1:58130308-58130327 MsG0180003189.01.T01:intron 40.0%
TGCAGGAGAAAATGCAAAGT+TGG - Chr1:58130486-58130505 MsG0180003189.01.T01:intron 40.0%
TTAGTTGAAGCTTGATGGAG+TGG - Chr1:58129483-58129502 MsG0180003189.01.T01:intron 40.0%
TTGAATGTTCATCCAGATGC+AGG - Chr1:58130469-58130488 MsG0180003189.01.T01:intron 40.0%
TTGCTGAGTATGAACTACGA+AGG - Chr1:58131246-58131265 MsG0180003189.01.T01:intron 40.0%
TTTGAATCAGATTCGCTCTG+AGG - Chr1:58130332-58130351 MsG0180003189.01.T01:intron 40.0%
! CGTTGCTGTTATGTTTGTTC+TGG - Chr1:58130989-58131008 MsG0180003189.01.T01:intron 40.0%
! GTGTTTTATCAATCTGCGAG+AGG - Chr1:58128294-58128313 MsG0180003189.01.T01:intron 40.0%
! GTTTAAAGTTGTTGGGATGG+AGG - Chr1:58128751-58128770 MsG0180003189.01.T01:CDS 40.0%
! TTGCTTTGCTATGCACGTAT+CGG - Chr1:58131345-58131364 MsG0180003189.01.T01:CDS 40.0%
! TTTGCATTTTCTCCTGCATC+TGG + Chr1:58130484-58130503 None:intergenic 40.0%
!! AACAAGAAAGGTGCTGATTG+AGG + Chr1:58127960-58127979 None:intergenic 40.0%
!! GAACTGTCTTTTGCTTTTGG+TGG - Chr1:58130893-58130912 MsG0180003189.01.T01:intron 40.0%
!! TGTTGCTTTGTTACATGCAG+CGG + Chr1:58131434-58131453 None:intergenic 40.0%
!!! GTTCTGGCTTTTATGAATCC+AGG - Chr1:58131005-58131024 MsG0180003189.01.T01:intron 40.0%
ACGCTGAGGAATCGAAGTTA+AGG + Chr1:58127760-58127779 None:intergenic 45.0%
AGATAAGGTGATACACGCTG+AGG + Chr1:58127774-58127793 None:intergenic 45.0%
ATACGATACGGTGTAAAGGG+TGG + Chr1:58127816-58127835 None:intergenic 45.0%
CAAGATGGAGCTATTCCTTG+GGG - Chr1:58131206-58131225 MsG0180003189.01.T01:intron 45.0%
CCAAGATGGAGCTATTCCTT+GGG - Chr1:58131205-58131224 MsG0180003189.01.T01:intron 45.0%
CCCTGATTTCCATAATCTGC+AGG + Chr1:58130281-58130300 None:intergenic 45.0%
CTTGGGAACATATCTGAGAG+CGG + Chr1:58128372-58128391 None:intergenic 45.0%
CTTTACACGACTGTTTACCC+TGG + Chr1:58129742-58129761 None:intergenic 45.0%
GAGAGCGGTCTACAAAGTTA+AGG + Chr1:58128357-58128376 None:intergenic 45.0%
GTTGCAAATTTACCTAGGCG+AGG + Chr1:58131496-58131515 None:intergenic 45.0%
GTTGGTTGAAAATTGTGCGC+AGG + Chr1:58127915-58127934 None:intergenic 45.0%
TCCAAGATGGAGCTATTCCT+TGG - Chr1:58131204-58131223 MsG0180003189.01.T01:intron 45.0%
TCCTCATCATCACGGATAAC+AGG + Chr1:58129337-58129356 None:intergenic 45.0%
TCGCTGATGCTTTCCAAAAG+CGG - Chr1:58130519-58130538 MsG0180003189.01.T01:intron 45.0%
TGTTTCGAAGATTTGCGGCA+AGG - Chr1:58129041-58129060 MsG0180003189.01.T01:intron 45.0%
TTGAGGCACAGTTACAAGCA+GGG + Chr1:58131139-58131158 None:intergenic 45.0%
! ACCTGTTATCCGTGATGATG+AGG - Chr1:58129333-58129352 MsG0180003189.01.T01:intron 45.0%
! CGACTGTTTACCCTGGATTT+TGG + Chr1:58129735-58129754 None:intergenic 45.0%
! CTTCTTCAAAGTCCCGCTTT+TGG + Chr1:58130535-58130554 None:intergenic 45.0%
! TGATTTGGAGGGGAAGTACA+AGG - Chr1:58128894-58128913 MsG0180003189.01.T01:intron 45.0%
! TGTACGTATTTTCCTCGCCT+AGG - Chr1:58131481-58131500 MsG0180003189.01.T01:CDS 45.0%
! TTTGAGGCACAGTTACAAGC+AGG + Chr1:58131140-58131159 None:intergenic 45.0%
!! GTAGGGGGTATTGATTTGGA+GGG - Chr1:58128883-58128902 MsG0180003189.01.T01:intron 45.0%
!! TAGGGGGTATTGATTTGGAG+GGG - Chr1:58128884-58128903 MsG0180003189.01.T01:intron 45.0%
!! TGACGTAGGGGGTATTGATT+TGG - Chr1:58128879-58128898 MsG0180003189.01.T01:intron 45.0%
!! TGATGGAGTGGAAGTTGATG+AGG - Chr1:58129495-58129514 MsG0180003189.01.T01:intron 45.0%
!! TTGTTCTTCTGGTTCTGGGT+GGG - Chr1:58128066-58128085 MsG0180003189.01.T01:three_prime_UTR 45.0%
!! TTTGTTCTTCTGGTTCTGGG+TGG - Chr1:58128065-58128084 MsG0180003189.01.T01:three_prime_UTR 45.0%
!!! CTTTTGGAAAGCATCAGCGA+AGG + Chr1:58130519-58130538 None:intergenic 45.0%
CACGACTGGCAGAACAAGAA+AGG + Chr1:58127972-58127991 None:intergenic 50.0%
CCCAAGGAATAGCTCCATCT+TGG + Chr1:58131208-58131227 None:intergenic 50.0%
CCTCGCCGAAAAACACATGT+AGG + Chr1:58131526-58131545 None:intergenic 50.0%
CGCTGATGCTTTCCAAAAGC+GGG - Chr1:58130520-58130539 MsG0180003189.01.T01:intron 50.0%
GAGTGTTCATGCTAGGGATG+TGG + Chr1:58131403-58131422 None:intergenic 50.0%
GCGTGACAATTCCAGCATGT+TGG + Chr1:58127933-58127952 None:intergenic 50.0%
GTTGAATGCAACGACACGAC+TGG + Chr1:58127986-58128005 None:intergenic 50.0%
GTTGGTGTAGGCTTCCAAGA+TGG - Chr1:58131191-58131210 MsG0180003189.01.T01:intron 50.0%
TACGGTGTAAAGGGTGGTGA+TGG + Chr1:58127810-58127829 None:intergenic 50.0%
TCGAAGATTTGCGGCAAGGA+AGG - Chr1:58129045-58129064 MsG0180003189.01.T01:intron 50.0%
! AGGGAGAGGAAGTATGACGT+AGG - Chr1:58128865-58128884 MsG0180003189.01.T01:intron 50.0%
! GAGAGGAAGTATGACGTAGG+GGG - Chr1:58128868-58128887 MsG0180003189.01.T01:intron 50.0%
! GGAGAGGAAGTATGACGTAG+GGG - Chr1:58128867-58128886 MsG0180003189.01.T01:intron 50.0%
! GGGAGAGGAAGTATGACGTA+GGG - Chr1:58128866-58128885 MsG0180003189.01.T01:intron 50.0%
!! AAGGGTGGTGATGGAGATTG+AGG + Chr1:58127801-58127820 None:intergenic 50.0%
!! CCTACATGTGTTTTTCGGCG+AGG - Chr1:58131523-58131542 MsG0180003189.01.T01:CDS 50.0%
!! CGTAGGGGGTATTGATTTGG+AGG - Chr1:58128882-58128901 MsG0180003189.01.T01:intron 50.0%
ATCTACCATTTGCCGCCCCA+AGG + Chr1:58131224-58131243 None:intergenic 55.0%
CTATTCCTTGGGGCGGCAAA+TGG - Chr1:58131216-58131235 MsG0180003189.01.T01:intron 55.0%
GATGGAGCTATTCCTTGGGG+CGG - Chr1:58131209-58131228 MsG0180003189.01.T01:intron 55.0%
! TGGAGGGGAAGTACAAGGAG+TGG - Chr1:58128899-58128918 MsG0180003189.01.T01:intron 55.0%
CATGCTAGGGATGTGGCTCG+TGG + Chr1:58131396-58131415 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 58127696 58131600 58127696 ID=MsG0180003189.01;Name=MsG0180003189.01
Chr1 mRNA 58127696 58131600 58127696 ID=MsG0180003189.01.T01;Parent=MsG0180003189.01;Name=MsG0180003189.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0.83|1|1|0.5|0.42|7|464|236
Chr1 exon 58127696 58128095 58127696 ID=MsG0180003189.01.T01:exon:3647;Parent=MsG0180003189.01.T01
Chr1 exon 58128254 58128312 58128254 ID=MsG0180003189.01.T01:exon:3646;Parent=MsG0180003189.01.T01
Chr1 exon 58128669 58128811 58128669 ID=MsG0180003189.01.T01:exon:3645;Parent=MsG0180003189.01.T01
Chr1 exon 58128943 58129011 58128943 ID=MsG0180003189.01.T01:exon:3644;Parent=MsG0180003189.01.T01
Chr1 exon 58129744 58129809 58129744 ID=MsG0180003189.01.T01:exon:3643;Parent=MsG0180003189.01.T01
Chr1 exon 58130070 58130159 58130070 ID=MsG0180003189.01.T01:exon:3642;Parent=MsG0180003189.01.T01
Chr1 exon 58131253 58131600 58131253 ID=MsG0180003189.01.T01:exon:3641;Parent=MsG0180003189.01.T01
Chr1 CDS 58131253 58131600 58131253 ID=MsG0180003189.01.T01:cds;Parent=MsG0180003189.01.T01
Chr1 CDS 58130070 58130159 58130070 ID=MsG0180003189.01.T01:cds;Parent=MsG0180003189.01.T01
Chr1 CDS 58129744 58129809 58129744 ID=MsG0180003189.01.T01:cds;Parent=MsG0180003189.01.T01
Chr1 CDS 58128943 58129011 58128943 ID=MsG0180003189.01.T01:cds;Parent=MsG0180003189.01.T01
Chr1 CDS 58128674 58128811 58128674 ID=MsG0180003189.01.T01:cds;Parent=MsG0180003189.01.T01
Chr1 three_prime_UTR 58128669 58128673 58128669 ID=MsG0180003189.01.T01:three_prime_utr;Parent=MsG0180003189.01.T01
Chr1 three_prime_UTR 58128254 58128312 58128254 ID=MsG0180003189.01.T01:three_prime_utr;Parent=MsG0180003189.01.T01
Chr1 three_prime_UTR 58127696 58128095 58127696 ID=MsG0180003189.01.T01:three_prime_utr;Parent=MsG0180003189.01.T01
Gene Sequence

>MsG0180003189.01.T01

ATGACAAAGAAATATCTCTCCAAACCTCTTTCAACCTTCTTCAACTTTATACGAACACGAACCTTAACTTCGATTCCTCAGCGTGTATCACCTTATCTTAAACCTCAATCTCCATCACCACCCTTTACACCGTATCGTATTCATAATCTATATCATAATTACGATTATTCTTCATTTGGGTCTCTACGATTTTGCAAAAAAAGTTTGTGTTCAAAACCTGCGCACAATTTTCAACCAACATGCTGGAATTGTCACGCTGTTCCTCAATCAGCACCTTTCTTGTTCTGCCAGTCGTGTCGTTGCATTCAACCTGTTGATGTTCAAATGACTATTTCCATATTTTGGATTGAAGAAAGAGATTATGCTGCTGAACAATCTGCAAGAGTGATTGATGCATATCGTACACTTAGCAAACCTTTGTCAAGAGCAATTTACATGTTGAAGCTTGATGGAGTGGAAGTTGATGAGGAGCAGACAATTTCAGATCCAGAATTATTAGCAGAGATTATGGAAATCAGGGAAGCCGTTGAAGAAGCAACTAACTCTGAGGCTTTGAATCAGATTCGCTCTGAGATGCAGGAGAAAATGCAAAGTTGGTCTAATGCCTTCGCTGATGCTTTCCAAAAGCGGGACTTTGAAGAAGCAAAGAATGCAATTAGAAGAATGATTTATTATACTCGTGTAATTGAGGAAGTTGTAAAGAAGCTTTGA

Protein sequence

>MsG0180003189.01.T01

MTKKYLSKPLSTFFNFIRTRTLTSIPQRVSPYLKPQSPSPPFTPYRIHNLYHNYDYSSFGSLRFCKKSLCSKPAHNFQPTCWNCHAVPQSAPFLFCQSCRCIQPVDVQMTISIFWIEERDYAAEQSARVIDAYRTLSKPLSRAIYMLKLDGVEVDEEQTISDPELLAEIMEIREAVEEATNSEALNQIRSEMQEKMQSWSNAFADAFQKRDFEEAKNAIRRMIYYTRVIEEVVKKL*