AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011669.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011669.01.T01 MTR_3g408430 97.289 332 9 0 1 332 150 481 0.0 657
MsG0380011669.01.T01 MTR_4g036815 75.080 313 78 0 18 330 182 494 1.64e-172 488
MsG0380011669.01.T01 MTR_4g013255 29.183 257 171 6 49 301 321 570 3.81e-17 82.8
MsG0380011669.01.T01 MTR_2g021030 29.851 268 168 12 27 283 258 516 1.02e-16 81.3
MsG0380011669.01.T01 MTR_2g021030 30.712 267 167 10 27 283 129 387 6.09e-15 75.9
MsG0380011669.01.T01 MTR_2g021030 30.859 256 158 8 27 271 335 582 5.57e-13 70.1
MsG0380011669.01.T01 MTR_2g021030 25.566 309 176 8 29 283 157 465 3.42e-12 67.8
MsG0380011669.01.T01 MTR_2g021030 30.712 267 167 10 27 283 129 387 4.51e-15 76.3
MsG0380011669.01.T01 MTR_2g021030 29.048 210 109 9 27 228 258 435 1.65e-12 68.6
MsG0380011669.01.T01 MTR_1g114610 29.208 202 115 6 88 286 81 257 4.90e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011669.01.T01 AT5G07670 62.102 314 116 2 18 330 165 476 1.01e-132 387
MsG0380011669.01.T01 AT5G51380 60.450 311 123 0 18 328 167 477 1.73e-127 373
MsG0380011669.01.T01 AT5G51370 58.521 311 129 0 18 328 131 441 1.20e-123 362
MsG0380011669.01.T01 AT5G51370 57.333 225 96 0 18 242 131 355 3.19e-83 256
MsG0380011669.01.T01 AT4G15475 27.143 280 186 9 17 286 119 390 1.48e-14 75.1
MsG0380011669.01.T01 AT4G15475 26.667 270 182 10 27 287 258 520 1.79e-14 74.7

Find 80 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAGTGGTGAAGTTAAT+TGG 0.183566 3:+3290182 MsG0380011669.01.T01:CDS
CTCTTTGAGCGTTGTAAATA+AGG 0.265511 3:-3291861 None:intergenic
TGCTAAGGAGATTGTTCTTC+AGG 0.266354 3:+3290583 MsG0380011669.01.T01:CDS
GTGTAAGAGGTTAGTGAAAT+TGG 0.269764 3:+3290268 MsG0380011669.01.T01:CDS
TCCTGGATTGGAGGAACATT+TGG 0.280302 3:+3290469 MsG0380011669.01.T01:CDS
CAAAAGGGTGTCCGAATTTA+CGG 0.281538 3:+3290030 MsG0380011669.01.T01:CDS
GAATCTGTGGTTTCGGATAT+TGG 0.301458 3:+3290224 MsG0380011669.01.T01:CDS
GATTGTTCTTCAGGATTGTT+GGG 0.305740 3:+3290592 MsG0380011669.01.T01:CDS
TCGGTTTGGCTGTTGTTTGC+AGG 0.308503 3:+3290633 MsG0380011669.01.T01:CDS
CCTGGATTGGAGGAACATTT+GGG 0.325022 3:+3290470 MsG0380011669.01.T01:CDS
AAGAGGGGTTGGTTAGTATT+GGG 0.332818 3:+3290078 MsG0380011669.01.T01:CDS
ACCTTCAACTTCCGTAAATT+CGG 0.348446 3:-3290041 None:intergenic
TTGTTTGATGTTGGAAGAAT+TGG 0.353683 3:+3290343 MsG0380011669.01.T01:CDS
TCTTCAGGATTGTTGGGGTT+TGG 0.356666 3:+3290598 MsG0380011669.01.T01:CDS
TACAAGTGGTGAAGTTAATT+GGG 0.361268 3:+3290183 MsG0380011669.01.T01:CDS
TTTACTTCCCCGAGACTTGA+TGG 0.369229 3:-3291917 None:intergenic
TTACGGAAGTTGAAGGTAAC+TGG 0.369542 3:+3290047 MsG0380011669.01.T01:CDS
GTGAGAATTTGAAGACTTTG+AGG 0.383908 3:+3290417 MsG0380011669.01.T01:CDS
GATTGTTGGGGTTTGGATGA+TGG 0.388439 3:+3290605 MsG0380011669.01.T01:CDS
AAGTTAATTGGGAGTGTTGA+TGG 0.389086 3:+3290194 MsG0380011669.01.T01:CDS
CAACGCTCAAAGAGTTGAAA+TGG 0.389750 3:+3291870 MsG0380011669.01.T01:CDS
AATCTGTGGTTTCGGATATT+GGG 0.393863 3:+3290225 MsG0380011669.01.T01:CDS
AGATTGTTCTTCAGGATTGT+TGG 0.399277 3:+3290591 MsG0380011669.01.T01:CDS
GTAAATAAGGTCGCGAGTGC+AGG 0.404428 3:-3291848 None:intergenic
CCCTTATCAATTGCTTCAAC+CGG 0.408922 3:-3289993 None:intergenic
GTTGATACAGAGTGGTGTTT+CGG 0.411076 3:+3289936 MsG0380011669.01.T01:CDS
GTGTCTTGTAAGGTGATTGA+TGG 0.412926 3:+3290443 MsG0380011669.01.T01:CDS
ACCGGTTGAAGCAATTGATA+AGG 0.414611 3:+3289992 MsG0380011669.01.T01:CDS
GTGTGTTACATTGATGGAAT+TGG 0.414955 3:+3290106 MsG0380011669.01.T01:CDS
TCGATGGGATTAAAGCGATT+GGG 0.423784 3:+3290315 MsG0380011669.01.T01:CDS
GTAAAACTGTTTGACATAGA+AGG 0.427093 3:+3291716 MsG0380011669.01.T01:CDS
CCGGTTGAAGCAATTGATAA+GGG 0.433487 3:+3289993 MsG0380011669.01.T01:CDS
ATCTTCTACCATCAAGTCTC+GGG 0.439229 3:+3291909 MsG0380011669.01.T01:CDS
GGAAGAGTGTGTTACATTGA+TGG 0.441311 3:+3290100 MsG0380011669.01.T01:CDS
GTAACTGGTGGGAGTGAAGA+GGG 0.446864 3:+3290062 MsG0380011669.01.T01:CDS
TTTGAGGTTTGTGTCTTGTA+AGG 0.453944 3:+3290433 MsG0380011669.01.T01:CDS
GAAGAGGGGTTGGTTAGTAT+TGG 0.456537 3:+3290077 MsG0380011669.01.T01:CDS
TTCGATGGGATTAAAGCGAT+TGG 0.456566 3:+3290314 MsG0380011669.01.T01:CDS
GGTAACTGGTGGGAGTGAAG+AGG 0.457568 3:+3290061 MsG0380011669.01.T01:CDS
ATGGATGATGGATGGTTAGC+TGG 0.465814 3:+3290383 MsG0380011669.01.T01:CDS
AAGGTGATTGATGGTAATCC+TGG 0.473788 3:+3290452 MsG0380011669.01.T01:CDS
TTCGGTTTGTAGAGTTGCTA+AGG 0.478037 3:+3290568 MsG0380011669.01.T01:CDS
TTGGAGCTTGTTGGTTGTGA+AGG 0.486017 3:+3290287 MsG0380011669.01.T01:CDS
CCCAAATGTTCCTCCAATCC+AGG 0.488453 3:-3290470 None:intergenic
GGTTGTGAAGGGAGTTTCGA+TGG 0.492372 3:+3290299 MsG0380011669.01.T01:CDS
TGGTGGGAGTGAAGAGGGGT+TGG 0.505084 3:+3290067 MsG0380011669.01.T01:CDS
TCCGAATTTACGGAAGTTGA+AGG 0.507512 3:+3290040 MsG0380011669.01.T01:CDS
AATCACGGACTCTAAACCTT+CGG 0.509378 3:-3291756 None:intergenic
GTTGTGAAGGGAGTTTCGAT+GGG 0.515606 3:+3290300 MsG0380011669.01.T01:CDS
GGGTTGAAAGAAGTTGCAAA+AGG 0.515791 3:+3290014 MsG0380011669.01.T01:CDS
GTTGATCATAGGATGGATGA+TGG 0.516780 3:+3290371 MsG0380011669.01.T01:CDS
TAGAGTCCGTGATTGAATCA+TGG 0.519512 3:+3291765 MsG0380011669.01.T01:CDS
TGGGGCATGTTGTTTGATGT+TGG 0.520213 3:+3290334 MsG0380011669.01.T01:CDS
TGCTCGTTGCTTACAACCGA+AGG 0.529914 3:+3291740 MsG0380011669.01.T01:CDS
AGTTAATTGGGAGTGTTGAT+GGG 0.532541 3:+3290195 MsG0380011669.01.T01:CDS
CATCTTCTACCATCAAGTCT+CGG 0.533858 3:+3291908 MsG0380011669.01.T01:CDS
CGATGGGATTAAAGCGATTG+GGG 0.536640 3:+3290316 MsG0380011669.01.T01:CDS
TTAGTGAAATTGGAGCTTGT+TGG 0.552579 3:+3290278 MsG0380011669.01.T01:CDS
TGGAGCTTGTTGGTTGTGAA+GGG 0.553189 3:+3290288 MsG0380011669.01.T01:CDS
GGTTGAAAGAAGTTGCAAAA+GGG 0.557299 3:+3290015 MsG0380011669.01.T01:CDS
AGAGGGGTTGGTTAGTATTG+GGG 0.557469 3:+3290079 MsG0380011669.01.T01:CDS
AAGTCTCGGGGAAGTAAACA+TGG 0.561329 3:+3291922 MsG0380011669.01.T01:CDS
TAACTGGTGGGAGTGAAGAG+GGG 0.569561 3:+3290063 MsG0380011669.01.T01:CDS
CGGTTGAAGCAATTGATAAG+GGG 0.571061 3:+3289994 MsG0380011669.01.T01:CDS
GATTGATGGTAATCCTGGAT+TGG 0.572712 3:+3290457 MsG0380011669.01.T01:CDS
ATTGTTCTTCAGGATTGTTG+GGG 0.598171 3:+3290593 MsG0380011669.01.T01:CDS
GTCCGTGATTGAATCATGGA+AGG 0.600567 3:+3291769 MsG0380011669.01.T01:CDS
CTGGATTGGAGGAACATTTG+GGG 0.607991 3:+3290471 MsG0380011669.01.T01:CDS
CGCTCAAAGAGTTGAAATGG+AGG 0.614994 3:+3291873 MsG0380011669.01.T01:CDS
ATTAAGGGATAAGAATGCAA+TGG 0.617677 3:+3290535 MsG0380011669.01.T01:CDS
ATCCTTCCATGATTCAATCA+CGG 0.618648 3:-3291771 None:intergenic
CGGAAGTTGAAGGTAACTGG+TGG 0.623597 3:+3290050 MsG0380011669.01.T01:CDS
ATCATAGGATGGATGATGGA+TGG 0.627721 3:+3290375 MsG0380011669.01.T01:CDS
AGTCTCGGGGAAGTAAACAT+GGG 0.658337 3:+3291923 MsG0380011669.01.T01:CDS
GGAAGTTGAAGGTAACTGGT+GGG 0.659271 3:+3290051 MsG0380011669.01.T01:CDS
TGATGGTAATCCTGGATTGG+AGG 0.660453 3:+3290460 MsG0380011669.01.T01:CDS
GTCTCGGGGAAGTAAACATG+GGG 0.672576 3:+3291924 MsG0380011669.01.T01:CDS
GGCGTGTAAGAATTTACAAG+TGG 0.687214 3:+3290169 MsG0380011669.01.T01:CDS
TCTTCTACCATCAAGTCTCG+GGG 0.690847 3:+3291910 MsG0380011669.01.T01:CDS
CAATGCGGGTTGATACAGAG+TGG 0.708252 3:+3289928 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATCCTTATTAACTAT+TGG + Chr3:3290960-3290979 MsG0380011669.01.T01:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - Chr3:3290961-3290980 None:intergenic 15.0%
!! TGTATCTTGTAAAAATATAA+AGG + Chr3:3291811-3291830 MsG0380011669.01.T01:CDS 15.0%
!!! TTTGTATTTGAAATGTAAAT+CGG + Chr3:3291265-3291284 MsG0380011669.01.T01:intron 15.0%
!! AAAATGTTAAAATCATGTTG+TGG + Chr3:3291521-3291540 MsG0380011669.01.T01:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - Chr3:3290970-3290989 None:intergenic 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + Chr3:3290927-3290946 MsG0380011669.01.T01:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + Chr3:3291047-3291066 MsG0380011669.01.T01:intron 20.0%
!! TTACATTTCAAATACAAACT+TGG - Chr3:3291263-3291282 None:intergenic 20.0%
!! TTCTTCTCATCTATAAATAA+AGG - Chr3:3291502-3291521 None:intergenic 20.0%
!!! GTGTTATTGAAATTTTGAAT+TGG + Chr3:3290664-3290683 MsG0380011669.01.T01:intron 20.0%
!!! TAGTTTTAAAAGTAATGCTT+TGG + Chr3:3290984-3291003 MsG0380011669.01.T01:intron 20.0%
!!! TTTGTATTTGAAATGTGAAT+TGG + Chr3:3291309-3291328 MsG0380011669.01.T01:intron 20.0%
! ATACAAACTTGGATTATGTT+AGG - Chr3:3291252-3291271 None:intergenic 25.0%
! ATGACTTATGAGTTACTTAA+TGG + Chr3:3291663-3291682 MsG0380011669.01.T01:intron 25.0%
!! ATTTTCAGAGATGTCAATTA+AGG + Chr3:3290519-3290538 MsG0380011669.01.T01:CDS 25.0%
!! TCTAGCTTGTGTTTATTTAT+TGG + Chr3:3290749-3290768 MsG0380011669.01.T01:intron 25.0%
!! TTTTACAAGATACAACTCTA+AGG - Chr3:3291805-3291824 None:intergenic 25.0%
!! TTTTCAGAGATGTCAATTAA+GGG + Chr3:3290520-3290539 MsG0380011669.01.T01:CDS 25.0%
!!! AATTGGTTTTTGTTGATCAT+AGG + Chr3:3290360-3290379 MsG0380011669.01.T01:CDS 25.0%
ATGAAAGTTTGTCTAATCTC+CGG + Chr3:3291592-3291611 MsG0380011669.01.T01:intron 30.0%
ATGTTGTGGCAAATGTTTAA+AGG + Chr3:3291535-3291554 MsG0380011669.01.T01:intron 30.0%
ATTAAGGGATAAGAATGCAA+TGG + Chr3:3290535-3290554 MsG0380011669.01.T01:CDS 30.0%
ATTTATTGGTCCATTCACAT+TGG + Chr3:3290763-3290782 MsG0380011669.01.T01:intron 30.0%
GGTATTCTTAATTGACAATC+TGG + Chr3:3291565-3291584 MsG0380011669.01.T01:intron 30.0%
GTAAAACTGTTTGACATAGA+AGG + Chr3:3291716-3291735 MsG0380011669.01.T01:CDS 30.0%
TACAAGTGGTGAAGTTAATT+GGG + Chr3:3290183-3290202 MsG0380011669.01.T01:CDS 30.0%
TCCAAAACTATCAACTTGAT+CGG - Chr3:3291475-3291494 None:intergenic 30.0%
TTACAAGTGGTGAAGTTAAT+TGG + Chr3:3290182-3290201 MsG0380011669.01.T01:CDS 30.0%
TTGTTTGATGTTGGAAGAAT+TGG + Chr3:3290343-3290362 MsG0380011669.01.T01:CDS 30.0%
! GTAGTGTTCAGAGTATTAAT+TGG + Chr3:3291009-3291028 MsG0380011669.01.T01:intron 30.0%
! GTTTTATGAATCTGTGGTTT+CGG + Chr3:3290217-3290236 MsG0380011669.01.T01:CDS 30.0%
! GTTTTTCTGATGAAGTGAAA+GGG + Chr3:3289958-3289977 MsG0380011669.01.T01:CDS 30.0%
! TATTGTTGTTAGCATGTCTT+TGG + Chr3:3290810-3290829 MsG0380011669.01.T01:intron 30.0%
! TGTTCAGAGTATTAATTGGA+GGG + Chr3:3291013-3291032 MsG0380011669.01.T01:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG - Chr3:3290878-3290897 None:intergenic 30.0%
!! GAAAGGGAAAAATTTGTTAC+CGG + Chr3:3289974-3289993 MsG0380011669.01.T01:CDS 30.0%
!! GTACATAAAAGTACTCAATG+TGG - Chr3:3291220-3291239 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + Chr3:3290879-3290898 MsG0380011669.01.T01:intron 30.0%
AATCTGTGGTTTCGGATATT+GGG + Chr3:3290225-3290244 MsG0380011669.01.T01:CDS 35.0%
ACCTTCAACTTCCGTAAATT+CGG - Chr3:3290044-3290063 None:intergenic 35.0%
AGATTGTTCTTCAGGATTGT+TGG + Chr3:3290591-3290610 MsG0380011669.01.T01:CDS 35.0%
AGTACTCAATGTGGTACTTA+AGG - Chr3:3291211-3291230 None:intergenic 35.0%
ATCCTTCCATGATTCAATCA+CGG - Chr3:3291774-3291793 None:intergenic 35.0%
ATTGTTCTTCAGGATTGTTG+GGG + Chr3:3290593-3290612 MsG0380011669.01.T01:CDS 35.0%
GAAGTAAACATGGGGAAAAA+AGG + Chr3:3291932-3291951 MsG0380011669.01.T01:CDS 35.0%
GATTGTTCTTCAGGATTGTT+GGG + Chr3:3290592-3290611 MsG0380011669.01.T01:CDS 35.0%
GGTTGAAAGAAGTTGCAAAA+GGG + Chr3:3290015-3290034 MsG0380011669.01.T01:CDS 35.0%
GTGAGAATTTGAAGACTTTG+AGG + Chr3:3290417-3290436 MsG0380011669.01.T01:CDS 35.0%
GTGTAAGAGGTTAGTGAAAT+TGG + Chr3:3290268-3290287 MsG0380011669.01.T01:CDS 35.0%
GTGTGTTACATTGATGGAAT+TGG + Chr3:3290106-3290125 MsG0380011669.01.T01:CDS 35.0%
TGAAAGTTTGTCTAATCTCC+GGG + Chr3:3291593-3291612 MsG0380011669.01.T01:intron 35.0%
TTAGTGAAATTGGAGCTTGT+TGG + Chr3:3290278-3290297 MsG0380011669.01.T01:CDS 35.0%
! ACGTGTTTTTCCAATGTGAA+TGG - Chr3:3290776-3290795 None:intergenic 35.0%
! CTCTTTGAGCGTTGTAAATA+AGG - Chr3:3291864-3291883 None:intergenic 35.0%
! GGTAGAAGATGTTTTGTATC+TGG - Chr3:3291899-3291918 None:intergenic 35.0%
! GGTTTTTCTGATGAAGTGAA+AGG + Chr3:3289957-3289976 MsG0380011669.01.T01:CDS 35.0%
! GGTTTTTGTTGATCATAGGA+TGG + Chr3:3290364-3290383 MsG0380011669.01.T01:CDS 35.0%
! GTGTTCAGAGTATTAATTGG+AGG + Chr3:3291012-3291031 MsG0380011669.01.T01:intron 35.0%
! TGTAATGACGATGTTTTACG+TGG + Chr3:3290140-3290159 MsG0380011669.01.T01:CDS 35.0%
! TGTTGCTCTGTTTCATTTTC+AGG + Chr3:3291690-3291709 MsG0380011669.01.T01:intron 35.0%
! TTTGAGGTTTGTGTCTTGTA+AGG + Chr3:3290433-3290452 MsG0380011669.01.T01:CDS 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + Chr3:3291113-3291132 MsG0380011669.01.T01:intron 35.0%
!! AAGTTAATTGGGAGTGTTGA+TGG + Chr3:3290194-3290213 MsG0380011669.01.T01:CDS 35.0%
!! AGTTAATTGGGAGTGTTGAT+GGG + Chr3:3290195-3290214 MsG0380011669.01.T01:CDS 35.0%
!!! AAGGCGGTAAATTTTTCAAG+TGG + Chr3:3291951-3291970 MsG0380011669.01.T01:CDS 35.0%
!!! ACCTAATGGACTAGTCTTTT+GGG - Chr3:3291174-3291193 None:intergenic 35.0%
!!! GGTTGACTATTTTAGCACAA+GGG + Chr3:3290246-3290265 MsG0380011669.01.T01:CDS 35.0%
!!! TCCGATCAAGTTGATAGTTT+TGG + Chr3:3291471-3291490 MsG0380011669.01.T01:intron 35.0%
!!! TGATGGGTTTTATGAATCTG+TGG + Chr3:3290211-3290230 MsG0380011669.01.T01:CDS 35.0%
AAAGTTTGTCTAATCTCCGG+GGG + Chr3:3291595-3291614 MsG0380011669.01.T01:intron 40.0%
AATCACGGACTCTAAACCTT+CGG - Chr3:3291759-3291778 None:intergenic 40.0%
AATGTGGTACTTAAGGCATG+CGG - Chr3:3291204-3291223 None:intergenic 40.0%
ACCGGTTGAAGCAATTGATA+AGG + Chr3:3289992-3290011 MsG0380011669.01.T01:CDS 40.0%
AGTAACTCATAAGTAACCCC+CGG - Chr3:3291614-3291633 None:intergenic 40.0%
ATCTTCTACCATCAAGTCTC+GGG + Chr3:3291909-3291928 MsG0380011669.01.T01:CDS 40.0%
CAAATGTTTAAAGGTCGCTG+TGG + Chr3:3291544-3291563 MsG0380011669.01.T01:intron 40.0%
CAACGCTCAAAGAGTTGAAA+TGG + Chr3:3291870-3291889 MsG0380011669.01.T01:CDS 40.0%
CATCTTCTACCATCAAGTCT+CGG + Chr3:3291908-3291927 MsG0380011669.01.T01:CDS 40.0%
CCCTTATCAATTGCTTCAAC+CGG - Chr3:3289996-3290015 None:intergenic 40.0%
CCGGTTGAAGCAATTGATAA+GGG + Chr3:3289993-3290012 MsG0380011669.01.T01:CDS 40.0%
CGGTTGAAGCAATTGATAAG+GGG + Chr3:3289994-3290013 MsG0380011669.01.T01:CDS 40.0%
GAAAGTTTGTCTAATCTCCG+GGG + Chr3:3291594-3291613 MsG0380011669.01.T01:intron 40.0%
GAATCTGTGGTTTCGGATAT+TGG + Chr3:3290224-3290243 MsG0380011669.01.T01:CDS 40.0%
GGCGTGTAAGAATTTACAAG+TGG + Chr3:3290169-3290188 MsG0380011669.01.T01:CDS 40.0%
GGGTTGAAAGAAGTTGCAAA+AGG + Chr3:3290014-3290033 MsG0380011669.01.T01:CDS 40.0%
GTAAACATGGGGAAAAAAGG+CGG + Chr3:3291935-3291954 MsG0380011669.01.T01:CDS 40.0%
GTGTCTTGTAAGGTGATTGA+TGG + Chr3:3290443-3290462 MsG0380011669.01.T01:CDS 40.0%
GTTGATACAGAGTGGTGTTT+CGG + Chr3:3289936-3289955 MsG0380011669.01.T01:CDS 40.0%
GTTGATCATAGGATGGATGA+TGG + Chr3:3290371-3290390 MsG0380011669.01.T01:CDS 40.0%
TAGAGTCCGTGATTGAATCA+TGG + Chr3:3291765-3291784 MsG0380011669.01.T01:CDS 40.0%
TCCGAATTTACGGAAGTTGA+AGG + Chr3:3290040-3290059 MsG0380011669.01.T01:CDS 40.0%
TCGATGGGATTAAAGCGATT+GGG + Chr3:3290315-3290334 MsG0380011669.01.T01:CDS 40.0%
TGCTAAGGAGATTGTTCTTC+AGG + Chr3:3290583-3290602 MsG0380011669.01.T01:CDS 40.0%
TTACGGAAGTTGAAGGTAAC+TGG + Chr3:3290047-3290066 MsG0380011669.01.T01:CDS 40.0%
TTCGATGGGATTAAAGCGAT+TGG + Chr3:3290314-3290333 MsG0380011669.01.T01:CDS 40.0%
! AAGGTGATTGATGGTAATCC+TGG + Chr3:3290452-3290471 MsG0380011669.01.T01:CDS 40.0%
! CTGTTGTTTGCAGGTAATGT+GGG + Chr3:3290642-3290661 MsG0380011669.01.T01:intron 40.0%
! GATTGATGGTAATCCTGGAT+TGG + Chr3:3290457-3290476 MsG0380011669.01.T01:CDS 40.0%
! GGAAGAGTGTGTTACATTGA+TGG + Chr3:3290100-3290119 MsG0380011669.01.T01:CDS 40.0%
! TTCGGTTTGTAGAGTTGCTA+AGG + Chr3:3290568-3290587 MsG0380011669.01.T01:CDS 40.0%
!! AAGAGGGGTTGGTTAGTATT+GGG + Chr3:3290078-3290097 MsG0380011669.01.T01:CDS 40.0%
!! ATCATAGGATGGATGATGGA+TGG + Chr3:3290375-3290394 MsG0380011669.01.T01:CDS 40.0%
!! CAAAAGGGTGTCCGAATTTA+CGG + Chr3:3290030-3290049 MsG0380011669.01.T01:CDS 40.0%
!! TTTTAGCACAAGGGTGTAAG+AGG + Chr3:3290255-3290274 MsG0380011669.01.T01:CDS 40.0%
!!! CACCTAATGGACTAGTCTTT+TGG - Chr3:3291175-3291194 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr3:3291117-3291136 MsG0380011669.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr3:3291136-3291117 None:intergenic 40.0%
!!! GGGTTGACTATTTTAGCACA+AGG + Chr3:3290245-3290264 MsG0380011669.01.T01:CDS 40.0%
!!! TGCAATGGCAGCTGTTTTTT+CGG + Chr3:3290550-3290569 MsG0380011669.01.T01:CDS 40.0%
AAGTCTCGGGGAAGTAAACA+TGG + Chr3:3291922-3291941 MsG0380011669.01.T01:CDS 45.0%
AGTCTCGGGGAAGTAAACAT+GGG + Chr3:3291923-3291942 MsG0380011669.01.T01:CDS 45.0%
CGATGGGATTAAAGCGATTG+GGG + Chr3:3290316-3290335 MsG0380011669.01.T01:CDS 45.0%
CGCTCAAAGAGTTGAAATGG+AGG + Chr3:3291873-3291892 MsG0380011669.01.T01:CDS 45.0%
GATTGTTGGGGTTTGGATGA+TGG + Chr3:3290605-3290624 MsG0380011669.01.T01:CDS 45.0%
GGAAGTTGAAGGTAACTGGT+GGG + Chr3:3290051-3290070 MsG0380011669.01.T01:CDS 45.0%
GTCCGTGATTGAATCATGGA+AGG + Chr3:3291769-3291788 MsG0380011669.01.T01:CDS 45.0%
GTTGTGAAGGGAGTTTCGAT+GGG + Chr3:3290300-3290319 MsG0380011669.01.T01:CDS 45.0%
TCTTCAGGATTGTTGGGGTT+TGG + Chr3:3290598-3290617 MsG0380011669.01.T01:CDS 45.0%
TCTTCTACCATCAAGTCTCG+GGG + Chr3:3291910-3291929 MsG0380011669.01.T01:CDS 45.0%
TTTACTTCCCCGAGACTTGA+TGG - Chr3:3291920-3291939 None:intergenic 45.0%
! CCTGGATTGGAGGAACATTT+GGG + Chr3:3290470-3290489 MsG0380011669.01.T01:CDS 45.0%
! CGATGTTTTACGTGGTGTAG+CGG + Chr3:3290148-3290167 MsG0380011669.01.T01:CDS 45.0%
! CTGGATTGGAGGAACATTTG+GGG + Chr3:3290471-3290490 MsG0380011669.01.T01:CDS 45.0%
! GCCCAAAAGACTAGTCCATT+AGG + Chr3:3291170-3291189 MsG0380011669.01.T01:intron 45.0%
! GCTGTTGTTTGCAGGTAATG+TGG + Chr3:3290641-3290660 MsG0380011669.01.T01:intron 45.0%
! TCCTGGATTGGAGGAACATT+TGG + Chr3:3290469-3290488 MsG0380011669.01.T01:CDS 45.0%
! TGATGGTAATCCTGGATTGG+AGG + Chr3:3290460-3290479 MsG0380011669.01.T01:CDS 45.0%
! TGGGGCATGTTGTTTGATGT+TGG + Chr3:3290334-3290353 MsG0380011669.01.T01:CDS 45.0%
!! AGAGGGGTTGGTTAGTATTG+GGG + Chr3:3290079-3290098 MsG0380011669.01.T01:CDS 45.0%
!! ATGGATGATGGATGGTTAGC+TGG + Chr3:3290383-3290402 MsG0380011669.01.T01:CDS 45.0%
!! GAAGAGGGGTTGGTTAGTAT+TGG + Chr3:3290077-3290096 MsG0380011669.01.T01:CDS 45.0%
!! GGTTTGGATGATGGCGTTTT+CGG + Chr3:3290614-3290633 MsG0380011669.01.T01:CDS 45.0%
!! TGGAGCTTGTTGGTTGTGAA+GGG + Chr3:3290288-3290307 MsG0380011669.01.T01:CDS 45.0%
!! TTGGAGCTTGTTGGTTGTGA+AGG + Chr3:3290287-3290306 MsG0380011669.01.T01:CDS 45.0%
!!! AATGGACTAGTCTTTTGGGC+CGG - Chr3:3291170-3291189 None:intergenic 45.0%
!!! CATTTTGAAACGGAGGGAGT+AGG + Chr3:3291123-3291142 MsG0380011669.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr3:3291116-3291135 MsG0380011669.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr3:3291135-3291116 None:intergenic 45.0%
CATGCGGTTCTCTCACCTAA+TGG - Chr3:3291188-3291207 None:intergenic 50.0%
CCCAAATGTTCCTCCAATCC+AGG - Chr3:3290473-3290492 None:intergenic 50.0%
CGGAAGTTGAAGGTAACTGG+TGG + Chr3:3290050-3290069 MsG0380011669.01.T01:CDS 50.0%
GAGTAGGAGTTAAGCCTGTG+AGG + Chr3:3291139-3291158 MsG0380011669.01.T01:intron 50.0%
GGTTGTGAAGGGAGTTTCGA+TGG + Chr3:3290299-3290318 MsG0380011669.01.T01:CDS 50.0%
GTAAATAAGGTCGCGAGTGC+AGG - Chr3:3291851-3291870 None:intergenic 50.0%
GTAACTGGTGGGAGTGAAGA+GGG + Chr3:3290062-3290081 MsG0380011669.01.T01:CDS 50.0%
GTCTCGGGGAAGTAAACATG+GGG + Chr3:3291924-3291943 MsG0380011669.01.T01:CDS 50.0%
TAACTGGTGGGAGTGAAGAG+GGG + Chr3:3290063-3290082 MsG0380011669.01.T01:CDS 50.0%
TGCTCGTTGCTTACAACCGA+AGG + Chr3:3291740-3291759 MsG0380011669.01.T01:CDS 50.0%
TTAAGCCTGTGAGGAGAGTC+CGG + Chr3:3291148-3291167 MsG0380011669.01.T01:intron 50.0%
!! GGATGATGGCGTTTTCGGTT+TGG + Chr3:3290619-3290638 MsG0380011669.01.T01:CDS 50.0%
!! TCGGTTTGGCTGTTGTTTGC+AGG + Chr3:3290633-3290652 MsG0380011669.01.T01:CDS 50.0%
GGTAACTGGTGGGAGTGAAG+AGG + Chr3:3290061-3290080 MsG0380011669.01.T01:CDS 55.0%
TGGTGGGAGTGAAGAGGGGT+TGG + Chr3:3290067-3290086 MsG0380011669.01.T01:CDS 60.0%
TTGGGCCGGACTCTCCTCAC+AGG - Chr3:3291156-3291175 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 3289930 3291985 3289930 ID=MsG0380011669.01;Name=MsG0380011669.01
Chr3 mRNA 3289930 3291985 3289930 ID=MsG0380011669.01.T01;Parent=MsG0380011669.01;Name=MsG0380011669.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|0.5|2|0|332
Chr3 exon 3289930 3290654 3289930 ID=MsG0380011669.01.T01:exon:975;Parent=MsG0380011669.01.T01
Chr3 exon 3291712 3291985 3291712 ID=MsG0380011669.01.T01:exon:976;Parent=MsG0380011669.01.T01
Chr3 CDS 3289930 3290654 3289930 ID=MsG0380011669.01.T01:cds;Parent=MsG0380011669.01.T01
Chr3 CDS 3291712 3291985 3291712 ID=MsG0380011669.01.T01:cds;Parent=MsG0380011669.01.T01
Gene Sequence

>MsG0380011669.01.T01

ATGCGGGTTGATACAGAGTGGTGTTTCGGTTTTTCTGATGAAGTGAAAGGGAAAAATTTGTTACCGGTTGAAGCAATTGATAAGGGGTTGAAAGAAGTTGCAAAAGGGTGTCCGAATTTACGGAAGTTGAAGGTAACTGGTGGGAGTGAAGAGGGGTTGGTTAGTATTGGGGAAGAGTGTGTTACATTGATGGAATTGGAATTGCAGAAGTGTAATGACGATGTTTTACGTGGTGTAGCGGCGTGTAAGAATTTACAAGTGGTGAAGTTAATTGGGAGTGTTGATGGGTTTTATGAATCTGTGGTTTCGGATATTGGGTTGACTATTTTAGCACAAGGGTGTAAGAGGTTAGTGAAATTGGAGCTTGTTGGTTGTGAAGGGAGTTTCGATGGGATTAAAGCGATTGGGGCATGTTGTTTGATGTTGGAAGAATTGGTTTTTGTTGATCATAGGATGGATGATGGATGGTTAGCTGGTGTTTCGTTTTGTGAGAATTTGAAGACTTTGAGGTTTGTGTCTTGTAAGGTGATTGATGGTAATCCTGGATTGGAGGAACATTTGGGGTTTTGTGTTGCACTTGAAAGTTTGCATTTTCAGAGATGTCAATTAAGGGATAAGAATGCAATGGCAGCTGTTTTTTCGGTTTGTAGAGTTGCTAAGGAGATTGTTCTTCAGGATTGTTGGGGTTTGGATGATGGCGTTTTCGGTTTGGCTGTTGTTTGCAGGCGAGTAAAACTGTTTGACATAGAAGGATGCTCGTTGCTTACAACCGAAGGTTTAGAGTCCGTGATTGAATCATGGAAGGATCTCGAGTGCCTTAGAGTTGTATCTTGTAAAAATATAAAGGATAGCGATATCTCTCCTGCACTCGCGACCTTATTTACAACGCTCAAAGAGTTGAAATGGAGGCCAGATACAAAACATCTTCTACCATCAAGTCTCGGGGAAGTAAACATGGGGAAAAAAGGCGGTAAATTTTTCAAGTGGACTCATGCCTGA

Protein sequence

>MsG0380011669.01.T01

MRVDTEWCFGFSDEVKGKNLLPVEAIDKGLKEVAKGCPNLRKLKVTGGSEEGLVSIGEECVTLMELELQKCNDDVLRGVAACKNLQVVKLIGSVDGFYESVVSDIGLTILAQGCKRLVKLELVGCEGSFDGIKAIGACCLMLEELVFVDHRMDDGWLAGVSFCENLKTLRFVSCKVIDGNPGLEEHLGFCVALESLHFQRCQLRDKNAMAAVFSVCRVAKEIVLQDCWGLDDGVFGLAVVCRRVKLFDIEGCSLLTTEGLESVIESWKDLECLRVVSCKNIKDSDISPALATLFTTLKELKWRPDTKHLLPSSLGEVNMGKKGGKFFKWTHA*