AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021917.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021917.01.T01 MTR_4g078850 41.228 228 85 7 1 221 1 186 1.91e-33 124
MsG0480021917.01.T01 MTR_4g078850 100.000 53 0 0 210 262 264 316 1.73e-29 114
MsG0480021917.01.T01 MTR_2g014470 36.111 252 101 10 1 240 1 204 9.68e-30 114
MsG0480021917.01.T01 MTR_2g014470 79.310 58 12 0 205 262 254 311 2.09e-24 100
MsG0480021917.01.T01 MTR_4g015840 37.559 213 85 7 1 207 1 171 1.65e-26 105
MsG0480021917.01.T01 MTR_4g015840 67.925 53 17 0 210 262 259 311 3.52e-19 85.9
MsG0480021917.01.T01 MTR_2g014480 44.654 159 44 6 1 157 1 117 4.06e-24 99.4
MsG0480021917.01.T01 MTR_2g090705 81.132 53 10 0 210 262 255 307 1.49e-21 92.4
MsG0480021917.01.T01 MTR_2g090705 41.290 155 49 6 1 152 1 116 1.14e-18 84.3
MsG0480021917.01.T01 MTR_4g015840 67.925 53 17 0 210 262 182 234 1.27e-19 85.9
MsG0480021917.01.T01 MTR_3g108020 37.975 158 46 4 1 158 1 106 4.22e-18 82.8
MsG0480021917.01.T01 MTR_5g037880 54.717 53 24 0 210 262 195 247 7.63e-13 67.4
MsG0480021917.01.T01 MTR_7g109340 58.333 48 16 1 5 48 27 74 7.04e-11 62.0
MsG0480021917.01.T01 MTR_3g437840 50.909 55 27 0 210 264 82 136 8.76e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021917.01.T01 AT4G28480 38.870 301 106 8 1 262 1 262 3.31e-47 159
MsG0480021917.01.T01 AT5G01390 39.098 266 101 7 1 262 1 209 1.14e-46 156
MsG0480021917.01.T01 AT5G01390 37.931 290 110 8 1 262 1 248 6.81e-46 155
MsG0480021917.01.T01 AT2G20560 43.125 160 48 5 1 158 1 119 1.66e-26 105
MsG0480021917.01.T01 AT2G20560 79.245 53 11 0 210 262 257 309 3.90e-21 91.3
MsG0480021917.01.T01 AT4G28480 42.667 150 46 5 1 149 1 111 1.54e-23 98.2
MsG0480021917.01.T01 AT4G28480 77.358 53 12 0 210 262 268 320 1.77e-20 89.7
MsG0480021917.01.T01 AT5G01390 40.506 158 51 5 1 157 1 116 6.83e-23 94.0
MsG0480021917.01.T01 AT5G01390 39.873 158 52 5 1 157 1 116 1.43e-22 95.1
MsG0480021917.01.T01 AT5G01390 69.811 53 16 0 210 262 254 306 1.63e-19 86.7
MsG0480021917.01.T01 AT3G08910 41.250 160 47 6 1 158 1 115 4.94e-22 93.6
MsG0480021917.01.T01 AT3G08910 69.811 53 16 0 210 262 241 293 4.97e-19 85.5
MsG0480021917.01.T01 AT2G20550 73.585 53 14 0 210 262 204 256 3.23e-18 82.4
MsG0480021917.01.T01 AT2G20550 73.585 53 14 0 210 262 204 256 3.23e-18 82.4
MsG0480021917.01.T01 AT1G10350 35.294 153 60 4 1 152 1 115 4.03e-18 83.2
MsG0480021917.01.T01 AT1G10350 51.724 58 27 1 205 262 263 319 2.18e-11 63.5
MsG0480021917.01.T01 AT5G25530 38.608 158 57 6 1 158 1 118 1.79e-17 81.3
MsG0480021917.01.T01 AT5G25530 50.943 53 26 0 210 262 266 318 1.08e-11 64.7
MsG0480021917.01.T01 AT5G25530 36.076 158 53 5 1 158 1 110 2.41e-15 75.1
MsG0480021917.01.T01 AT5G25530 50.943 53 26 0 210 262 258 310 1.18e-11 64.3
MsG0480021917.01.T01 AT1G59725 55.172 58 26 0 205 262 244 301 1.13e-13 70.1
MsG0480021917.01.T01 AT1G59725 66.667 42 14 0 1 42 1 42 5.58e-13 68.2
MsG0480021917.01.T01 AT3G47940 57.143 56 24 0 207 262 264 319 1.24e-12 67.4
MsG0480021917.01.T01 AT3G47940 65.854 41 14 0 1 41 1 41 1.69e-12 67.0

Find 76 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTGTTGCTATTGATTTA+TGG 0.094299 4:+65961225 MsG0480021917.01.T01:CDS
TCCTTCTTTGTTGGATCTTT+GGG 0.136509 4:-65962794 None:intergenic
TTCCTTCTTTGTTGGATCTT+TGG 0.151250 4:-65962795 None:intergenic
TGTTAGAATCTTTCTGATTC+TGG 0.167726 4:-65960499 None:intergenic
TGGAAATTTGACATGTTATA+AGG 0.228947 4:-65960479 None:intergenic
GGGAGTGGCATTCCTTCTTT+TGG 0.244717 4:-65962773 None:intergenic
GAAAGCATCTATGATCAATA+TGG 0.263576 4:+65961393 MsG0480021917.01.T01:CDS
CCTCAAGTTTCCTTCTTTGT+TGG 0.263918 4:-65962803 None:intergenic
AAAGAGAGAAGAAGAAGAAA+TGG 0.296571 4:+65960632 MsG0480021917.01.T01:exon
ATGAACTCAAGAAGGCTTAT+AGG 0.305596 4:+65960703 MsG0480021917.01.T01:CDS
CAATATGGGAGAAGGTTTAA+AGG 0.310883 4:+65961408 MsG0480021917.01.T01:CDS
CCTCCTCCTGATGCTGGTAT+TGG 0.355158 4:+65961438 MsG0480021917.01.T01:CDS
TTTATCAGGGTGCCATTTCA+TGG 0.357811 4:-65960733 None:intergenic
TCTCTTGCGGAGGCCTTAAC+TGG 0.359708 4:+65962662 MsG0480021917.01.T01:CDS
GCAAATTTCTGAAGCTTATG+AGG 0.366911 4:+65960793 MsG0480021917.01.T01:CDS
CTCAAGTCCTTTGGTGGCAT+GGG 0.379168 4:+65961555 MsG0480021917.01.T01:CDS
CTTCCAACCACTCACGGTTA+TGG 0.380882 4:-65962503 None:intergenic
TCTCAAGTCCTTTGGTGGCA+TGG 0.395083 4:+65961554 MsG0480021917.01.T01:CDS
GGCTGTTCGTTGCCCTTCTC+CGG 0.397797 4:-65962544 None:intergenic
GGCATGGGTGGAAGAGGTGG+TGG 0.404060 4:+65961570 MsG0480021917.01.T01:CDS
GCTGACCGACCATGCTTACT+TGG 0.420072 4:+65961181 MsG0480021917.01.T01:intron
TGGAACAACCTCCTCATAGT+TGG 0.427888 4:-65962753 None:intergenic
CCTCCTGATGCTGGTATTGG+AGG 0.430560 4:+65961441 MsG0480021917.01.T01:CDS
ATAGGAAACTTGCCATGAAA+TGG 0.433703 4:+65960721 MsG0480021917.01.T01:CDS
GATTGAACCGAAAACGATCC+AGG 0.437878 4:-65961495 None:intergenic
TTTGGTGGCATGGGTGGAAG+AGG 0.440481 4:+65961564 MsG0480021917.01.T01:CDS
TGGATTCTCAAGTCCTTTGG+TGG 0.445285 4:+65961549 MsG0480021917.01.T01:CDS
ACCGTGAGTGGTTGGAAGAA+GGG 0.446458 4:+65962508 MsG0480021917.01.T01:CDS
TTTGTTGGATCTTTGGGGAG+TGG 0.450265 4:-65962788 None:intergenic
AAGAGAGAAGAAGAAGAAAT+GGG 0.452906 4:+65960633 MsG0480021917.01.T01:exon
GGAACAACCTCCTCATAGTT+GGG 0.454108 4:-65962752 None:intergenic
TCTACGCTGAGATTGTTGTT+TGG 0.460545 4:-65960554 None:intergenic
CTATTCACAGGAGATATGCC+TGG 0.464875 4:+65961477 MsG0480021917.01.T01:CDS
AATATGGGAGAAGGTTTAAA+GGG 0.464992 4:+65961409 MsG0480021917.01.T01:CDS
CAATATCTCTTCTACTGGCA+TGG 0.466117 4:-65962479 None:intergenic
GGATGGATAACATTGTTGAT+TGG 0.466142 4:-65962731 None:intergenic
CCTGATGCTGGTATTGGAGG+TGG 0.473591 4:+65961444 MsG0480021917.01.T01:CDS
AAAGCATCTATGATCAATAT+GGG 0.474494 4:+65961394 MsG0480021917.01.T01:CDS
TCAGTTCCTCCTCCTGATGC+TGG 0.481147 4:+65961432 MsG0480021917.01.T01:CDS
CTTCTTGAGTTCATCGTCGT+TGG 0.485387 4:-65960694 None:intergenic
CCTTCTTTGTTGGATCTTTG+GGG 0.485748 4:-65962793 None:intergenic
AAGTCCTTTGGTGGCATGGG+TGG 0.490927 4:+65961558 MsG0480021917.01.T01:CDS
GTGCACTGTGTAACCAGTTA+AGG 0.491645 4:-65962675 None:intergenic
TCCCTTCTTCCAACCACTCA+CGG 0.492368 4:-65962509 None:intergenic
GTTCGTTGCCCTTCTCCGGA+AGG 0.494357 4:-65962540 None:intergenic
CGCTGAGATTGTTGTTTGGA+AGG 0.498945 4:-65960550 None:intergenic
CCACCTCCAATACCAGCATC+AGG 0.499650 4:-65961444 None:intergenic
AGACTACTACAAAATCTTGC+AGG 0.501198 4:+65960659 MsG0480021917.01.T01:CDS
GGTGGCATGGGTGGAAGAGG+TGG 0.507963 4:+65961567 MsG0480021917.01.T01:CDS
AACCGTGAGTGGTTGGAAGA+AGG 0.509123 4:+65962507 MsG0480021917.01.T01:CDS
GAAGGGACAAGATCACCTTC+CGG 0.509376 4:+65962525 MsG0480021917.01.T01:CDS
ATGGTCAATATCTCTTCTAC+TGG 0.511842 4:-65962484 None:intergenic
ACAAGATCACCTTCCGGAGA+AGG 0.529123 4:+65962531 MsG0480021917.01.T01:CDS
CCCCAAAGATCCAACAAAGA+AGG 0.533617 4:+65962793 MsG0480021917.01.T01:CDS
CACAGTGCACCTCACTACAT+TGG 0.539341 4:+65962688 MsG0480021917.01.T01:CDS
CAACCTCCTCATAGTTGGGA+TGG 0.540630 4:-65962748 None:intergenic
GAGGAGGTTGTTCCAAAAGA+AGG 0.542649 4:+65962761 MsG0480021917.01.T01:CDS
CAAGATCACCTTCCGGAGAA+GGG 0.554282 4:+65962532 MsG0480021917.01.T01:CDS
TGACCATAACCGTGAGTGGT+TGG 0.564372 4:+65962500 MsG0480021917.01.T01:CDS
TCTTCCACCCATGCCACCAA+AGG 0.572750 4:-65961562 None:intergenic
TGTTATCCATCCCAACTATG+AGG 0.573529 4:+65962742 MsG0480021917.01.T01:CDS
CCAATACCAGCATCAGGAGG+AGG 0.585089 4:-65961438 None:intergenic
AAAATGTCATCTGCATTCCT+CGG 0.587320 4:-65961517 None:intergenic
GTGCACCTCACTACATTGGA+TGG 0.588922 4:+65962692 MsG0480021917.01.T01:CDS
CTTATCCAAGTAAGCATGGT+CGG 0.592215 4:-65961186 None:intergenic
CAACGACGATGAACTCAAGA+AGG 0.592339 4:+65960695 MsG0480021917.01.T01:CDS
TCTATGATCAATATGGGAGA+AGG 0.607702 4:+65961400 MsG0480021917.01.T01:CDS
CAAACTTATCCAAGTAAGCA+TGG 0.610750 4:-65961190 None:intergenic
TGACTCAAAGATATCTCTTG+CGG 0.635040 4:+65962649 MsG0480021917.01.T01:CDS
CACAGCGTCTTCAGTCGTGA+AGG 0.640212 4:+65962613 MsG0480021917.01.T01:intron
CCAACAAAGAAGGAAACTTG+AGG 0.646420 4:+65962803 MsG0480021917.01.T01:CDS
CTCAAAGATATCTCTTGCGG+AGG 0.652036 4:+65962652 MsG0480021917.01.T01:CDS
ATATTGACCATAACCGTGAG+TGG 0.666133 4:+65962496 MsG0480021917.01.T01:CDS
TTCTACCATCCAATGTAGTG+AGG 0.667261 4:-65962697 None:intergenic
TATCCATCCCAACTATGAGG+AGG 0.689077 4:+65962745 MsG0480021917.01.T01:CDS
CCTCCAATACCAGCATCAGG+AGG 0.700117 4:-65961441 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAATCTTATTAAATA+AGG - Chr4:65962322-65962341 None:intergenic 10.0%
!! CAAAAAATCTTATTAAATAA+GGG - Chr4:65962321-65962340 None:intergenic 10.0%
!!! AATTATTTTTATGCATTATA+GGG + Chr4:65961991-65962010 MsG0480021917.01.T01:intron 10.0%
!!! TAATTATTTTTATGCATTAT+AGG + Chr4:65961990-65962009 MsG0480021917.01.T01:intron 10.0%
!! ACTCAATATAAAAAATTATC+TGG + Chr4:65960879-65960898 MsG0480021917.01.T01:intron 15.0%
!! CTCAATATAAAAAATTATCT+GGG + Chr4:65960880-65960899 MsG0480021917.01.T01:intron 15.0%
!! TAGTTTATATGTTAGTTATT+TGG + Chr4:65961055-65961074 MsG0480021917.01.T01:intron 15.0%
!!! ATTATTTTTATGCATTATAG+GGG + Chr4:65961992-65962011 MsG0480021917.01.T01:intron 15.0%
!!! TATAGATTTTTCATTCTATT+TGG - Chr4:65962395-65962414 None:intergenic 15.0%
!!! TTTCTTTTACATTTTTTAGT+CGG + Chr4:65961825-65961844 MsG0480021917.01.T01:intron 15.0%
!! AAATGAAGATTATATGCTTT+AGG - Chr4:65961881-65961900 None:intergenic 20.0%
!! AATACATACATGGTTAATAT+TGG - Chr4:65962434-65962453 None:intergenic 20.0%
!! AATCTATCATAAACCATATT+TGG - Chr4:65961138-65961157 None:intergenic 20.0%
!! AATGAAGATTATATGCTTTA+GGG - Chr4:65961880-65961899 None:intergenic 20.0%
!! GACAAATTTCATATATTGTA+AGG + Chr4:65961965-65961984 MsG0480021917.01.T01:intron 20.0%
!!! AAGATTTTTTGTTTATGCAA+TGG + Chr4:65962330-65962349 MsG0480021917.01.T01:intron 20.0%
!!! ATATTGATGGTTATTCTTAA+TGG + Chr4:65962046-65962065 MsG0480021917.01.T01:intron 20.0%
!!! ATTTATGGATGTTTTTCATA+AGG + Chr4:65961240-65961259 MsG0480021917.01.T01:CDS 20.0%
!!! TGGTTATGTATTTTGTTATA+AGG + Chr4:65960975-65960994 MsG0480021917.01.T01:intron 20.0%
!!! TTATTTTTATGCATTATAGG+GGG + Chr4:65961993-65962012 MsG0480021917.01.T01:intron 20.0%
!!! TTTATGGATGTTTTTCATAA+GGG + Chr4:65961241-65961260 MsG0480021917.01.T01:CDS 20.0%
! AAAAAGATGTAGATAAGTAG+AGG - Chr4:65962196-65962215 None:intergenic 25.0%
! AAGGAAGATTAATACATACA+TGG - Chr4:65962444-65962463 None:intergenic 25.0%
! ACAAACTAAACACTAACATT+TGG - Chr4:65962247-65962266 None:intergenic 25.0%
! ACATAACCAAATACAAAAGT+TGG - Chr4:65960964-65960983 None:intergenic 25.0%
! TGAAACAAAGCAAACAAATT+TGG - Chr4:65961006-65961025 None:intergenic 25.0%
! TGCTTGTGTTAAGTTTAATT+TGG + Chr4:65961853-65961872 MsG0480021917.01.T01:intron 25.0%
! TGGAAATTTGACATGTTATA+AGG - Chr4:65960482-65960501 None:intergenic 25.0%
!! AAAGCATCTATGATCAATAT+GGG + Chr4:65961394-65961413 MsG0480021917.01.T01:CDS 25.0%
!! AATTCACCAACTTTTGTATT+TGG + Chr4:65960955-65960974 MsG0480021917.01.T01:intron 25.0%
!! ATTAATGAGTTGACCAAATA+TGG + Chr4:65961122-65961141 MsG0480021917.01.T01:intron 25.0%
!! TGATTTATGGACTATATTGA+TGG + Chr4:65962033-65962052 MsG0480021917.01.T01:intron 25.0%
!!! AATGTTAGTGTTTAGTTTGT+CGG + Chr4:65962247-65962266 MsG0480021917.01.T01:intron 25.0%
!!! ATGTTTGGTGATGATATTTT+TGG + Chr4:65961620-65961639 MsG0480021917.01.T01:intron 25.0%
!!! TGTTTGGTGATGATATTTTT+GGG + Chr4:65961621-65961640 MsG0480021917.01.T01:intron 25.0%
!!! TTGTTTGCTTTGTTTCAATT+AGG + Chr4:65961009-65961028 MsG0480021917.01.T01:intron 25.0%
AAACATGACATTGTCAAAGT+AGG + Chr4:65962099-65962118 MsG0480021917.01.T01:intron 30.0%
AAAGAGAGAAGAAGAAGAAA+TGG + Chr4:65960632-65960651 MsG0480021917.01.T01:exon 30.0%
AAGAGAGAAGAAGAAGAAAT+GGG + Chr4:65960633-65960652 MsG0480021917.01.T01:exon 30.0%
AATATGGGAGAAGGTTTAAA+GGG + Chr4:65961409-65961428 MsG0480021917.01.T01:CDS 30.0%
GATGACAAAAATAAGATCTG+CGG - Chr4:65962581-65962600 None:intergenic 30.0%
TCTCTTAAGCGTGAAATTAT+AGG + Chr4:65960923-65960942 MsG0480021917.01.T01:intron 30.0%
TGTTAGAATCTTTCTGATTC+TGG - Chr4:65960502-65960521 None:intergenic 30.0%
TTACTTTGTGTTGTCAATTG+TGG + Chr4:65961341-65961360 MsG0480021917.01.T01:intron 30.0%
TTGTCAATTGTGGTTATTGA+AGG + Chr4:65961351-65961370 MsG0480021917.01.T01:intron 30.0%
! ATCATAGATGCTTTCTTTTC+AGG - Chr4:65961388-65961407 None:intergenic 30.0%
! ATTGAGAGTGTGATGATTTA+TGG + Chr4:65962020-65962039 MsG0480021917.01.T01:intron 30.0%
! CTTTGACAATGTCATGTTTT+AGG - Chr4:65962098-65962117 None:intergenic 30.0%
!! GAAAGCATCTATGATCAATA+TGG + Chr4:65961393-65961412 MsG0480021917.01.T01:CDS 30.0%
!! TGTTGGTTGGATTTTTATCA+GGG - Chr4:65960749-65960768 None:intergenic 30.0%
!! TTGATGTCTTATTTGACTGA+TGG + Chr4:65962165-65962184 MsG0480021917.01.T01:intron 30.0%
!! TTGCTGTTGCTATTGATTTA+TGG + Chr4:65961225-65961244 MsG0480021917.01.T01:CDS 30.0%
!! TTGTTGGTTGGATTTTTATC+AGG - Chr4:65960750-65960769 None:intergenic 30.0%
!!! ATATTTTTGGGTCTTTTGGA+AGG + Chr4:65961633-65961652 MsG0480021917.01.T01:intron 30.0%
!!! GATGATATTTTTGGGTCTTT+TGG + Chr4:65961629-65961648 MsG0480021917.01.T01:intron 30.0%
!!! TTATTTTTGTCATCGACGAA+AGG + Chr4:65962587-65962606 MsG0480021917.01.T01:intron 30.0%
AAAATGTCATCTGCATTCCT+CGG - Chr4:65961520-65961539 None:intergenic 35.0%
AGACTACTACAAAATCTTGC+AGG + Chr4:65960659-65960678 MsG0480021917.01.T01:CDS 35.0%
ATAGGAAACTTGCCATGAAA+TGG + Chr4:65960721-65960740 MsG0480021917.01.T01:CDS 35.0%
ATGAACTCAAGAAGGCTTAT+AGG + Chr4:65960703-65960722 MsG0480021917.01.T01:CDS 35.0%
ATGGTCAATATCTCTTCTAC+TGG - Chr4:65962487-65962506 None:intergenic 35.0%
CAAACTTATCCAAGTAAGCA+TGG - Chr4:65961193-65961212 None:intergenic 35.0%
CAATATGGGAGAAGGTTTAA+AGG + Chr4:65961408-65961427 MsG0480021917.01.T01:CDS 35.0%
GGATGGATAACATTGTTGAT+TGG - Chr4:65962734-65962753 None:intergenic 35.0%
TCCTTCTTTGTTGGATCTTT+GGG - Chr4:65962797-65962816 None:intergenic 35.0%
TCTATGATCAATATGGGAGA+AGG + Chr4:65961400-65961419 MsG0480021917.01.T01:CDS 35.0%
TGACTCAAAGATATCTCTTG+CGG + Chr4:65962649-65962668 MsG0480021917.01.T01:CDS 35.0%
TGCACTCTTGAGAGATTATA+GGG + Chr4:65961719-65961738 MsG0480021917.01.T01:intron 35.0%
TTCCTTCTTTGTTGGATCTT+TGG - Chr4:65962798-65962817 None:intergenic 35.0%
TTGCACTCTTGAGAGATTAT+AGG + Chr4:65961718-65961737 MsG0480021917.01.T01:intron 35.0%
TTTATGCAATGGCTAATGCA+TGG + Chr4:65962341-65962360 MsG0480021917.01.T01:intron 35.0%
! CTTTCTCTTCTTCAGTTTTG+CGG - Chr4:65960616-65960635 None:intergenic 35.0%
! GATGACATTTTGCAGAGTTT+TGG + Chr4:65961529-65961548 MsG0480021917.01.T01:CDS 35.0%
! TAGCTTCAGCATCTTTTTGT+TGG - Chr4:65960766-65960785 None:intergenic 35.0%
! TTCAGCATCTTTTTGTTGGT+TGG - Chr4:65960762-65960781 None:intergenic 35.0%
! TTTTGGATTCTCAAGTCCTT+TGG + Chr4:65961546-65961565 MsG0480021917.01.T01:CDS 35.0%
!! GCAAATTTCTGAAGCTTATG+AGG + Chr4:65960793-65960812 MsG0480021917.01.T01:CDS 35.0%
!! TGTCATGTTTTAGGCTCATA+CGG - Chr4:65962089-65962108 None:intergenic 35.0%
!!! GGAACTAGTTTTCTATTCAC+AGG + Chr4:65961465-65961484 MsG0480021917.01.T01:CDS 35.0%
ACCAAATGAGTAGCAGACAT+TGG - Chr4:65962140-65962159 None:intergenic 40.0%
AGAGAATTGCAGATGCTAGT+GGG + Chr4:65961766-65961785 MsG0480021917.01.T01:intron 40.0%
AGGGAGAAGTTGTTAGCAAA+AGG + Chr4:65962273-65962292 MsG0480021917.01.T01:intron 40.0%
ATATTGACCATAACCGTGAG+TGG + Chr4:65962496-65962515 MsG0480021917.01.T01:CDS 40.0%
CAATATCTCTTCTACTGGCA+TGG - Chr4:65962482-65962501 None:intergenic 40.0%
CCAAATGAGTAGCAGACATT+GGG - Chr4:65962139-65962158 None:intergenic 40.0%
CCTTCTTTGTTGGATCTTTG+GGG - Chr4:65962796-65962815 None:intergenic 40.0%
CTTATCCAAGTAAGCATGGT+CGG - Chr4:65961189-65961208 None:intergenic 40.0%
GACAAAAATAAGATCTGCGG+CGG - Chr4:65962578-65962597 None:intergenic 40.0%
GATCAAAACCTGCAATGTCT+TGG + Chr4:65962295-65962314 MsG0480021917.01.T01:intron 40.0%
TAGAGAATTGCAGATGCTAG+TGG + Chr4:65961765-65961784 MsG0480021917.01.T01:intron 40.0%
TGTATGAGATCAAGGTTCTC+TGG + Chr4:65961594-65961613 MsG0480021917.01.T01:intron 40.0%
TGTTATCCATCCCAACTATG+AGG + Chr4:65962742-65962761 MsG0480021917.01.T01:CDS 40.0%
TTCTACCATCCAATGTAGTG+AGG - Chr4:65962700-65962719 None:intergenic 40.0%
! ACTCAACTTGTTCTCAATGC+AGG - Chr4:65961699-65961718 None:intergenic 40.0%
! AGATATGCCTGGATCGTTTT+CGG + Chr4:65961488-65961507 MsG0480021917.01.T01:CDS 40.0%
! TCTACGCTGAGATTGTTGTT+TGG - Chr4:65960557-65960576 None:intergenic 40.0%
!! ATGGTTTTGCTGCACATACA+AGG - Chr4:65962463-65962482 None:intergenic 40.0%
!! GTTAGTGTTTAGTTTGTCGG+TGG + Chr4:65962250-65962269 MsG0480021917.01.T01:intron 40.0%
!! TTTATCAGGGTGCCATTTCA+TGG - Chr4:65960736-65960755 None:intergenic 40.0%
!!! TTTTTGGGTCTTTTGGAAGG+AGG + Chr4:65961636-65961655 MsG0480021917.01.T01:intron 40.0%
AATAAGGGCCAAGACATTGC+AGG - Chr4:65962306-65962325 None:intergenic 45.0%
AATGAGTAGCAGACATTGGG+TGG - Chr4:65962136-65962155 None:intergenic 45.0%
ATATGAGTCCATCTGCACCT+CGG + Chr4:65961667-65961686 MsG0480021917.01.T01:intron 45.0%
ATGAGATCAAGGTTCTCTGG+TGG + Chr4:65961597-65961616 MsG0480021917.01.T01:intron 45.0%
CAACGACGATGAACTCAAGA+AGG + Chr4:65960695-65960714 MsG0480021917.01.T01:CDS 45.0%
CCCAATGTCTGCTACTCATT+TGG + Chr4:65962136-65962155 MsG0480021917.01.T01:intron 45.0%
CCCCAAAGATCCAACAAAGA+AGG + Chr4:65962793-65962812 MsG0480021917.01.T01:CDS 45.0%
CTATTCACAGGAGATATGCC+TGG + Chr4:65961477-65961496 MsG0480021917.01.T01:CDS 45.0%
CTCAAAGATATCTCTTGCGG+AGG + Chr4:65962652-65962671 MsG0480021917.01.T01:CDS 45.0%
CTTCTTGAGTTCATCGTCGT+TGG - Chr4:65960697-65960716 None:intergenic 45.0%
GAGGAGGTTGTTCCAAAAGA+AGG + Chr4:65962761-65962780 MsG0480021917.01.T01:CDS 45.0%
GATTGAACCGAAAACGATCC+AGG - Chr4:65961498-65961517 None:intergenic 45.0%
GGAACAACCTCCTCATAGTT+GGG - Chr4:65962755-65962774 None:intergenic 45.0%
GGCTCATACGGTTTCTTCTT+CGG - Chr4:65962077-65962096 None:intergenic 45.0%
GTGCACTGTGTAACCAGTTA+AGG - Chr4:65962678-65962697 None:intergenic 45.0%
GTGGTGGTTGTATGAGATCA+AGG + Chr4:65961586-65961605 MsG0480021917.01.T01:intron 45.0%
TATCCATCCCAACTATGAGG+AGG + Chr4:65962745-65962764 MsG0480021917.01.T01:CDS 45.0%
TGGAACAACCTCCTCATAGT+TGG - Chr4:65962756-65962775 None:intergenic 45.0%
TGGATTCTCAAGTCCTTTGG+TGG + Chr4:65961549-65961568 MsG0480021917.01.T01:CDS 45.0%
! AAGGTTCTCTGGTGGATGTT+TGG + Chr4:65961605-65961624 MsG0480021917.01.T01:intron 45.0%
! ATCGTTTTCGGTTCAATCCG+AGG + Chr4:65961500-65961519 MsG0480021917.01.T01:CDS 45.0%
! TTTGTTGGATCTTTGGGGAG+TGG - Chr4:65962791-65962810 None:intergenic 45.0%
!! AGTGTTTAGTTTGTCGGTGG+AGG + Chr4:65962253-65962272 MsG0480021917.01.T01:intron 45.0%
!! CGCTGAGATTGTTGTTTGGA+AGG - Chr4:65960553-65960572 None:intergenic 45.0%
!! GTGTTTAGTTTGTCGGTGGA+GGG + Chr4:65962254-65962273 MsG0480021917.01.T01:intron 45.0%
AACCGTGAGTGGTTGGAAGA+AGG + Chr4:65962507-65962526 MsG0480021917.01.T01:CDS 50.0%
ACAAGATCACCTTCCGGAGA+AGG + Chr4:65962531-65962550 MsG0480021917.01.T01:CDS 50.0%
ACCGTGAGTGGTTGGAAGAA+GGG + Chr4:65962508-65962527 MsG0480021917.01.T01:CDS 50.0%
AGATCTGCGGCGGTTACATT+TGG - Chr4:65962568-65962587 None:intergenic 50.0%
CAACCTCCTCATAGTTGGGA+TGG - Chr4:65962751-65962770 None:intergenic 50.0%
CAAGATCACCTTCCGGAGAA+GGG + Chr4:65962532-65962551 MsG0480021917.01.T01:CDS 50.0%
CACAGTGCACCTCACTACAT+TGG + Chr4:65962688-65962707 MsG0480021917.01.T01:CDS 50.0%
CTTCCAACCACTCACGGTTA+TGG - Chr4:65962506-65962525 None:intergenic 50.0%
GAAGGGACAAGATCACCTTC+CGG + Chr4:65962525-65962544 MsG0480021917.01.T01:CDS 50.0%
GTGCACCTCACTACATTGGA+TGG + Chr4:65962692-65962711 MsG0480021917.01.T01:CDS 50.0%
TCCCTTCTTCCAACCACTCA+CGG - Chr4:65962512-65962531 None:intergenic 50.0%
TGACCATAACCGTGAGTGGT+TGG + Chr4:65962500-65962519 MsG0480021917.01.T01:CDS 50.0%
! CTCAAGTCCTTTGGTGGCAT+GGG + Chr4:65961555-65961574 MsG0480021917.01.T01:CDS 50.0%
! GAGGTGCAGATGGACTCATA+TGG - Chr4:65961668-65961687 None:intergenic 50.0%
! GGGAGTGGCATTCCTTCTTT+TGG - Chr4:65962776-65962795 None:intergenic 50.0%
! TCTCAAGTCCTTTGGTGGCA+TGG + Chr4:65961554-65961573 MsG0480021917.01.T01:CDS 50.0%
!! TTGGGTCTTTTGGAAGGAGG+AGG + Chr4:65961639-65961658 MsG0480021917.01.T01:intron 50.0%
AGCATGGTCGGTCAGCTACA+TGG - Chr4:65961177-65961196 None:intergenic 55.0%
CACAGCGTCTTCAGTCGTGA+AGG + Chr4:65962613-65962632 MsG0480021917.01.T01:intron 55.0%
CCAATACCAGCATCAGGAGG+AGG - Chr4:65961441-65961460 None:intergenic 55.0%
CCACCTCCAATACCAGCATC+AGG - Chr4:65961447-65961466 None:intergenic 55.0%
CCTCCAATACCAGCATCAGG+AGG - Chr4:65961444-65961463 None:intergenic 55.0%
CCTCCTCCTGATGCTGGTAT+TGG + Chr4:65961438-65961457 MsG0480021917.01.T01:CDS 55.0%
CTCAATGCAGGAGCTTTCCG+AGG - Chr4:65961687-65961706 None:intergenic 55.0%
GCTGACCGACCATGCTTACT+TGG + Chr4:65961181-65961200 MsG0480021917.01.T01:intron 55.0%
TCACGACTGAAGACGCTGTG+TGG - Chr4:65962613-65962632 None:intergenic 55.0%
TCAGTTCCTCCTCCTGATGC+TGG + Chr4:65961432-65961451 MsG0480021917.01.T01:CDS 55.0%
TCTCTTGCGGAGGCCTTAAC+TGG + Chr4:65962662-65962681 MsG0480021917.01.T01:CDS 55.0%
TCTTCCACCCATGCCACCAA+AGG - Chr4:65961565-65961584 None:intergenic 55.0%
! AAGTCCTTTGGTGGCATGGG+TGG + Chr4:65961558-65961577 MsG0480021917.01.T01:CDS 55.0%
! CCTCCTGATGCTGGTATTGG+AGG + Chr4:65961441-65961460 MsG0480021917.01.T01:CDS 55.0%
! CCTGATGCTGGTATTGGAGG+TGG + Chr4:65961444-65961463 MsG0480021917.01.T01:CDS 55.0%
! TTTGGTGGCATGGGTGGAAG+AGG + Chr4:65961564-65961583 MsG0480021917.01.T01:CDS 55.0%
GGAGCTTTCCGAGGTGCAGA+TGG - Chr4:65961678-65961697 None:intergenic 60.0%
GGCTGTTCGTTGCCCTTCTC+CGG - Chr4:65962547-65962566 None:intergenic 60.0%
GTTCGTTGCCCTTCTCCGGA+AGG - Chr4:65962543-65962562 None:intergenic 60.0%
GGCATGGGTGGAAGAGGTGG+TGG + Chr4:65961570-65961589 MsG0480021917.01.T01:CDS 65.0%
GGTGGCATGGGTGGAAGAGG+TGG + Chr4:65961567-65961586 MsG0480021917.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 65960469 65962823 65960469 ID=MsG0480021917.01;Name=MsG0480021917.01
Chr4 mRNA 65960469 65962823 65960469 ID=MsG0480021917.01.T01;Parent=MsG0480021917.01;Name=MsG0480021917.01.T01;_AED=0.29;_eAED=0.37;_QI=182|0|0.16|1|1|1|6|0|264
Chr4 exon 65960469 65960814 65960469 ID=MsG0480021917.01.T01:exon:18161;Parent=MsG0480021917.01.T01
Chr4 exon 65961031 65961064 65961031 ID=MsG0480021917.01.T01:exon:18162;Parent=MsG0480021917.01.T01
Chr4 exon 65961182 65961262 65961182 ID=MsG0480021917.01.T01:exon:18163;Parent=MsG0480021917.01.T01
Chr4 exon 65961373 65961594 65961373 ID=MsG0480021917.01.T01:exon:18164;Parent=MsG0480021917.01.T01
Chr4 exon 65962474 65962570 65962474 ID=MsG0480021917.01.T01:exon:18165;Parent=MsG0480021917.01.T01
Chr4 exon 65962627 65962823 65962627 ID=MsG0480021917.01.T01:exon:18166;Parent=MsG0480021917.01.T01
Chr4 five_prime_UTR 65960469 65960650 65960469 ID=MsG0480021917.01.T01:five_prime_utr;Parent=MsG0480021917.01.T01
Chr4 CDS 65960651 65960814 65960651 ID=MsG0480021917.01.T01:cds;Parent=MsG0480021917.01.T01
Chr4 CDS 65961031 65961064 65961031 ID=MsG0480021917.01.T01:cds;Parent=MsG0480021917.01.T01
Chr4 CDS 65961182 65961262 65961182 ID=MsG0480021917.01.T01:cds;Parent=MsG0480021917.01.T01
Chr4 CDS 65961373 65961594 65961373 ID=MsG0480021917.01.T01:cds;Parent=MsG0480021917.01.T01
Chr4 CDS 65962474 65962570 65962474 ID=MsG0480021917.01.T01:cds;Parent=MsG0480021917.01.T01
Chr4 CDS 65962627 65962823 65962627 ID=MsG0480021917.01.T01:cds;Parent=MsG0480021917.01.T01
Gene Sequence

>MsG0480021917.01.T01

ATGGGTGTAGACTACTACAAAATCTTGCAGGTTGATAAAAATGCCAACGACGATGAACTCAAGAAGGCTTATAGGAAACTTGCCATGAAATGGCACCCTGATAAAAATCCAACCAACAAAAAGATGCTGAAGCTAAGTTCAAGCAAATTTCTGAAGCTTATGAGGAGTGCAATAGTGAAACTGAAATATAGTTTATATCTGACCGACCATGCTTACTTGGATAAGTTTGTTGTTGTTGCTGTTGCTGTTGCTATTGATTTATGGATGTTTTTCATAAGGGTACTTAGTGATCCTGAAAAGAAAGCATCTATGATCAATATGGGAGAAGGTTTAAAGGGTCAGTTCCTCCTCCTGATGCTGGTATTGGAGGTGGAACTAGTTTTCTATTCACAGGAGATATGCCTGGATCGTTTTCGGTTCAATCCGAGGAATGCAGATGACATTTTGCAGAGTTTTGGATTCTCAAGTCCTTTGGTGGCATGGGTGGAAGAGGTGGTGGTTCAAAACCATGCCAGTAGAAGAGATATTGACCATAACCGTGAGTGGTTGGAAGAAGGGACAAGATCACCTTCCGGAGAAGGGCAACGAACAGCCAAATTCGTGAAGGAACGATTAAATTGTGACTCAAAGATATCTCTTGCGGAGGCCTTAACTGGTTACACAGTGCACCTCACTACATTGGATGGTAGAAACTTAAGCATACCAATCAACAATGTTATCCATCCCAACTATGAGGAGGTTGTTCCAAAAGAAGGAATGCCACTCCCCAAAGATCCAACAAAGAAGGAAACTTGA

Protein sequence

>MsG0480021917.01.T01

MGVDYYKILQVDKNANDDELKKAYRKLAMKWHPDKNPTNKKMLKLSSSKFLKLMRSAIVKLKYSLYLTDHAYLDKFVVVAVAVAIDLWMFFIRVLSDPEKKASMINMGEGLKGQFLLLMLVLEVELVFYSQEICLDRFRFNPRNADDILQSFGFSSPLVAWVEEVVVQNHASRRDIDHNREWLEEGTRSPSGEGQRTAKFVKERLNCDSKISLAEALTGYTVHLTTLDGRNLSIPINNVIHPNYEEVVPKEGMPLPKDPTKKET*