AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023943.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023943.01.T01 MTR_1g115415 95.266 507 16 2 1 505 1 501 0.0 962
MsG0480023943.01.T01 MTR_8g105560 83.726 467 23 2 37 503 11 424 0.0 762
MsG0480023943.01.T01 MTR_5g068860 51.914 418 195 2 57 472 89 502 1.49e-152 446
MsG0480023943.01.T01 MTR_4g070060 25.424 354 254 4 108 454 235 585 1.05e-34 138
MsG0480023943.01.T01 MTR_2g034600 26.480 321 190 6 142 459 210 487 5.84e-27 114
MsG0480023943.01.T01 MTR_2g034600 22.414 290 165 8 71 323 189 455 2.19e-12 69.7
MsG0480023943.01.T01 MTR_6g003960 27.164 335 238 6 128 460 263 593 6.63e-27 114
MsG0480023943.01.T01 MTR_2g034600 26.480 321 190 6 142 459 271 548 9.71e-27 114
MsG0480023943.01.T01 MTR_2g034600 22.414 290 165 8 71 323 250 516 2.83e-12 69.3
MsG0480023943.01.T01 MTR_2g034600 26.480 321 190 6 142 459 275 552 1.05e-26 114
MsG0480023943.01.T01 MTR_2g034600 22.414 290 165 8 71 323 254 520 2.83e-12 69.3
MsG0480023943.01.T01 MTR_4g084630 22.436 312 198 5 149 455 47 319 1.41e-25 107
MsG0480023943.01.T01 MTR_4g084630 25.108 231 147 3 86 315 45 250 3.49e-17 83.2
MsG0480023943.01.T01 MTR_5g094610 24.373 279 200 7 165 436 176 450 5.57e-20 93.2
MsG0480023943.01.T01 MTR_5g094610 24.627 268 186 8 85 340 194 457 2.47e-16 82.0
MsG0480023943.01.T01 MTR_2g049780 26.442 208 117 3 285 456 99 306 1.98e-15 77.8
MsG0480023943.01.T01 MTR_5g041630 27.823 248 167 6 219 460 61 302 1.96e-14 74.7
MsG0480023943.01.T01 MTR_2g067230 23.975 317 150 11 149 460 75 305 5.58e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023943.01.T01 AT2G44020 74.506 506 126 3 1 505 4 507 0.0 759
MsG0480023943.01.T01 AT4G02990 52.926 393 185 0 76 468 112 504 2.51e-151 443
MsG0480023943.01.T01 AT4G02990 52.926 393 185 0 76 468 112 504 2.51e-151 443
MsG0480023943.01.T01 AT2G21710 24.716 352 261 3 140 490 278 626 2.32e-38 149
MsG0480023943.01.T01 AT2G21710 26.070 257 176 5 70 315 272 525 2.63e-17 85.5
MsG0480023943.01.T01 AT1G78930 26.786 336 239 6 128 460 249 580 1.15e-31 129
MsG0480023943.01.T01 AT4G38160 25.547 274 195 4 191 458 54 324 5.78e-29 117
MsG0480023943.01.T01 AT4G38160 24.211 190 142 2 128 315 63 252 1.57e-15 78.2
MsG0480023943.01.T01 AT4G38160 25.547 274 195 4 191 458 54 324 5.78e-29 117
MsG0480023943.01.T01 AT4G38160 24.211 190 142 2 128 315 63 252 1.57e-15 78.2
MsG0480023943.01.T01 AT4G38160 25.547 274 195 4 191 458 54 324 1.24e-28 117
MsG0480023943.01.T01 AT4G38160 24.211 190 142 2 128 315 63 252 2.44e-15 78.2
MsG0480023943.01.T01 AT4G38160 25.547 274 195 4 191 458 54 324 1.80e-28 117
MsG0480023943.01.T01 AT4G38160 24.211 190 142 2 128 315 63 252 2.97e-15 77.8
MsG0480023943.01.T01 AT2G21710 23.571 280 212 2 140 418 278 556 1.83e-26 113
MsG0480023943.01.T01 AT2G21710 26.070 257 176 5 70 315 272 525 2.49e-17 85.5
MsG0480023943.01.T01 AT2G21710 23.381 278 211 2 140 416 278 554 1.27e-25 110
MsG0480023943.01.T01 AT2G21710 26.070 257 176 5 70 315 272 525 2.54e-17 85.5
MsG0480023943.01.T01 AT4G14605 25.389 386 267 9 77 455 97 468 2.49e-24 106
MsG0480023943.01.T01 AT4G14605 25.389 386 267 9 77 455 97 468 2.49e-24 106
MsG0480023943.01.T01 AT5G55580 26.484 219 154 4 221 434 119 335 2.42e-19 90.5
MsG0480023943.01.T01 AT5G55580 25.385 260 179 7 83 330 79 335 1.90e-16 81.6
MsG0480023943.01.T01 AT5G55580 24.312 218 159 3 147 362 117 330 9.37e-15 76.6
MsG0480023943.01.T01 AT5G55580 26.484 219 154 4 221 434 225 441 1.16e-18 89.4
MsG0480023943.01.T01 AT5G55580 25.385 260 179 7 83 330 185 441 1.67e-16 82.4
MsG0480023943.01.T01 AT5G55580 24.312 218 159 3 147 362 223 436 1.96e-14 76.3
MsG0480023943.01.T01 AT2G34620 26.866 268 155 7 195 460 68 296 2.16e-15 77.4
MsG0480023943.01.T01 AT5G54180 24.551 334 206 9 162 456 164 490 3.24e-15 78.6
MsG0480023943.01.T01 AT1G61980 24.412 340 234 10 140 466 81 410 3.35e-15 78.2
MsG0480023943.01.T01 AT1G61980 24.412 340 234 10 140 466 81 410 3.35e-15 78.2
MsG0480023943.01.T01 AT1G61980 24.412 340 234 10 140 466 81 410 3.35e-15 78.2
MsG0480023943.01.T01 AT2G03050 28.629 248 154 8 221 458 38 272 3.54e-13 70.5
MsG0480023943.01.T01 AT2G03050 28.629 248 154 8 221 458 39 273 3.79e-13 70.5
MsG0480023943.01.T01 AT2G36000 23.506 251 169 8 221 462 79 315 1.93e-12 68.6
MsG0480023943.01.T01 AT5G55580 25.000 172 127 2 147 316 223 394 2.15e-12 69.3
MsG0480023943.01.T01 AT5G55580 26.943 193 129 5 83 263 185 377 4.36e-12 68.2
MsG0480023943.01.T01 AT5G55580 24.419 172 124 3 221 388 225 394 8.12e-11 64.3
MsG0480023943.01.T01 AT2G36000 23.387 248 167 8 221 459 79 312 4.95e-12 67.8
MsG0480023943.01.T01 AT1G62110 22.084 403 221 12 143 466 58 446 6.13e-11 65.1

Find 108 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTAAAATTATTTGAAATT+TGG 0.026863 4:+91545637 None:intergenic
AAATCAGTATCCTTTGATTT+TGG 0.073063 4:-91545367 MsG0480023943.01.T01:CDS
GTTGAGTTTATTCAGAAATT+AGG 0.154219 4:-91545408 MsG0480023943.01.T01:CDS
GTTGATTACTTGGTTAATTT+AGG 0.165369 4:-91544988 MsG0480023943.01.T01:CDS
CCTAAAATTATTTGAAATTT+GGG 0.167978 4:+91545638 None:intergenic
GCTCAGTATCCGCAGATTAT+TGG 0.227610 4:-91544826 MsG0480023943.01.T01:CDS
TCCTGATGAATTGCAGGATT+TGG 0.241747 4:-91545466 MsG0480023943.01.T01:CDS
TTGATTACTTGGTTAATTTA+GGG 0.248506 4:-91544987 MsG0480023943.01.T01:CDS
GGATAAAATGTTCGTTGAAT+TGG 0.261081 4:-91544438 MsG0480023943.01.T01:CDS
ATTCAGGAAATTTAGAATCT+TGG 0.271735 4:+91545589 None:intergenic
AGAATACTTCACTTATAGTT+TGG 0.295127 4:-91544503 MsG0480023943.01.T01:CDS
CTCAGTATCCGCAGATTATT+GGG 0.297010 4:-91544825 MsG0480023943.01.T01:CDS
CTTCGATTATCTCAAGGGTT+TGG 0.298946 4:-91545496 MsG0480023943.01.T01:CDS
GTTGATTGTTTGATTAGTTT+TGG 0.307251 4:-91544880 MsG0480023943.01.T01:CDS
CTCTTAAGCCTCTGGTATCT+AGG 0.309752 4:+91544466 None:intergenic
TTCGATTATCTCAAGGGTTT+GGG 0.314201 4:-91545495 MsG0480023943.01.T01:CDS
TTGAGTTTATTCAGAAATTA+GGG 0.329984 4:-91545407 MsG0480023943.01.T01:CDS
ACAGTAGGCATCTCGTATTC+AGG 0.348869 4:+91545573 None:intergenic
TTCAGGAAATTTAGAATCTT+GGG 0.355416 4:+91545590 None:intergenic
CTTCAACCGTTGAAGTTATG+AGG 0.356463 4:-91545437 MsG0480023943.01.T01:CDS
AATTATTCCTGATGAATTGC+AGG 0.358521 4:-91545472 MsG0480023943.01.T01:CDS
CCTGTTATTAAGTTTCTTAG+AGG 0.361016 4:-91545210 MsG0480023943.01.T01:CDS
AAACTATAAGTGAAGTATTC+TGG 0.362016 4:+91544505 None:intergenic
TCAAAATGTGATTATGAAAC+CGG 0.364444 4:-91544686 MsG0480023943.01.T01:CDS
CTAATCAAACAATCAACATT+AGG 0.365413 4:+91544886 None:intergenic
CCTCTAAGAAACTTAATAAC+AGG 0.368936 4:+91545210 None:intergenic
TTAGTATTGGTGTTAATCCT+AGG 0.373470 4:-91545083 MsG0480023943.01.T01:CDS
TCCCCTTGCTCTTAAGCCTC+TGG 0.375995 4:+91544458 None:intergenic
ATCGCAGGATGTGGCTAGTA+TGG 0.382352 4:-91544635 MsG0480023943.01.T01:CDS
ATTGGATGTGGAAGTGCATT+TGG 0.388998 4:+91545675 None:intergenic
GAGATTTGAAGAGAGATTGC+AGG 0.401297 4:-91544395 MsG0480023943.01.T01:CDS
GAAGTGCATTTGGATAAAAT+TGG 0.403679 4:+91545685 None:intergenic
GTAGCTTATCTTGTTAGTAT+TGG 0.406186 4:-91545096 MsG0480023943.01.T01:CDS
CTCATAACTTCAACGGTTGA+AGG 0.413170 4:+91545438 None:intergenic
TCTGAAACTATGTCGTTTCC+TGG 0.421365 4:+91544310 None:intergenic
GAGAAAAGAGCTTATTTACT+TGG 0.423347 4:-91544934 MsG0480023943.01.T01:CDS
ACCACCCTCGCAAACCCTTC+CGG 0.428125 4:+91544739 None:intergenic
GCAATCTCTCTTCAAATCTC+TGG 0.437449 4:+91544398 None:intergenic
GAATGAAGGACCTATACTTT+CGG 0.437668 4:+91544357 None:intergenic
TCCGGAAGGGTTTGCGAGGG+TGG 0.445823 4:-91544740 MsG0480023943.01.T01:CDS
GGTGTTAATCCTAGGGATAT+TGG 0.451217 4:-91545075 MsG0480023943.01.T01:CDS
TACTTCTTCAAAAGTGAGAT+GGG 0.459036 4:-91544556 MsG0480023943.01.T01:CDS
GGAAGGGTTTGCGAGGGTGG+TGG 0.459551 4:-91544737 MsG0480023943.01.T01:CDS
GAGGAAGGAATGTTTGCCTT+CGG 0.461475 4:-91544854 MsG0480023943.01.T01:CDS
CGAGATGCCTACTGTTACAT+GGG 0.462699 4:-91545565 MsG0480023943.01.T01:CDS
TCCAAATCCTGCAATTCATC+AGG 0.465291 4:+91545465 None:intergenic
CATAGTTTCAGATGAGGAAG+AGG 0.486125 4:-91544299 MsG0480023943.01.T01:CDS
ATCCTAGCTAGAATCTTCTT+AGG 0.491214 4:+91544961 None:intergenic
GGGATTTCTAGGTCTAAACT+TGG 0.492563 4:-91545291 MsG0480023943.01.T01:CDS
ATAGGTCCTTCATTCCGTAT+TGG 0.501976 4:-91544349 MsG0480023943.01.T01:CDS
TACCAGAGGCTTAAGAGCAA+GGG 0.502139 4:-91544460 MsG0480023943.01.T01:CDS
CATCATCTTCGATTATCTCA+AGG 0.503798 4:-91545502 MsG0480023943.01.T01:CDS
TTTGAAGCTTAAGATTGATC+CGG 0.506836 4:-91544758 MsG0480023943.01.T01:CDS
TTACTTCTTCAAAAGTGAGA+TGG 0.508844 4:-91544557 MsG0480023943.01.T01:CDS
GATTATTGGGTTGCCTCTTG+AGG 0.512446 4:-91544812 MsG0480023943.01.T01:CDS
TCCTAGGGATATTGGTCCAA+TGG 0.513309 4:-91545067 MsG0480023943.01.T01:CDS
GTTACATGGGGTGTAATTCA+AGG 0.515509 4:-91545552 MsG0480023943.01.T01:CDS
TTAACCAAGTAATCAACAAA+AGG 0.515918 4:+91544994 None:intergenic
GATGTGGAGAAAGATGATAT+TGG 0.522013 4:-91545183 MsG0480023943.01.T01:CDS
TAGTATTGGTGTTAATCCTA+GGG 0.522188 4:-91545082 MsG0480023943.01.T01:CDS
ACGAGATGCCTACTGTTACA+TGG 0.523419 4:-91545566 MsG0480023943.01.T01:CDS
TATATTGAAACCGAAAGTAT+AGG 0.527577 4:-91544367 MsG0480023943.01.T01:CDS
CTAAAATTATTTGAAATTTG+GGG 0.529420 4:+91545639 None:intergenic
TAAGGATACTGTGTAACCAT+TGG 0.531997 4:+91545051 None:intergenic
ATCATCTTCGATTATCTCAA+GGG 0.534022 4:-91545501 MsG0480023943.01.T01:CDS
GCTCTAATTTCCCACCAATA+CGG 0.538425 4:+91544335 None:intergenic
GGTCCTTCATTCCGTATTGG+TGG 0.539928 4:-91544346 MsG0480023943.01.T01:CDS
AGTTTAAACCCTAAAAGTTG+AGG 0.546911 4:+91545141 None:intergenic
GGCAATACCATCGCAGGATG+TGG 0.548475 4:-91544644 MsG0480023943.01.T01:CDS
TTCCCACCAATACGGAATGA+AGG 0.553754 4:+91544343 None:intergenic
ACTCGCAGCGCAATCAATTG+AGG 0.555993 4:+91544601 None:intergenic
AGCTTAAGATTGATCCGGAA+GGG 0.556415 4:-91544753 MsG0480023943.01.T01:CDS
TAAAATTATTTGAAATTTGG+GGG 0.556825 4:+91545640 None:intergenic
GTCCTTCATTCCGTATTGGT+GGG 0.557863 4:-91544345 MsG0480023943.01.T01:CDS
TTCAACCGTTGAAGTTATGA+GGG 0.560167 4:-91545436 MsG0480023943.01.T01:CDS
AGATTTGAAGAGAGATTGCA+GGG 0.561148 4:-91544394 MsG0480023943.01.T01:CDS
ATACCAGAGGCTTAAGAGCA+AGG 0.565715 4:-91544461 MsG0480023943.01.T01:CDS
CAAAGAGAAACTCGTTTCGC+GGG 0.570276 4:-91545526 MsG0480023943.01.T01:CDS
GAAGATTCTAGCTAGGATGT+TGG 0.572863 4:-91544956 MsG0480023943.01.T01:CDS
GCAAAGAGAAACTCGTTTCG+CGG 0.577091 4:-91545527 MsG0480023943.01.T01:CDS
ACACTAGCATGCAAAACTTG+TGG 0.577739 4:+91545249 None:intergenic
ACGTTCCCTCATAACTTCAA+CGG 0.581773 4:+91545431 None:intergenic
GAGGCCTGTAAAAGAGCTTG+TGG 0.585209 4:-91544533 MsG0480023943.01.T01:CDS
ACACTACAGCCCAAAATCAA+AGG 0.590303 4:+91545357 None:intergenic
GAAGACAATTTAGCCTCAAG+AGG 0.596932 4:+91544799 None:intergenic
ACCAGAGGCTTAAGAGCAAG+GGG 0.605082 4:-91544459 MsG0480023943.01.T01:CDS
TGGTAGGGCAATACCATCGC+AGG 0.609868 4:-91544650 MsG0480023943.01.T01:CDS
GGTGGGAAATTAGAGCTACC+AGG 0.611291 4:-91544328 MsG0480023943.01.T01:CDS
TTGATCCGGAAGGGTTTGCG+AGG 0.614047 4:-91544744 MsG0480023943.01.T01:CDS
TGCCTAAGAAGATTCTAGCT+AGG 0.620780 4:-91544963 MsG0480023943.01.T01:CDS
AAGCTTAAGATTGATCCGGA+AGG 0.621599 4:-91544754 MsG0480023943.01.T01:CDS
TCTTCAAAAGTGAGATGGGG+AGG 0.627180 4:-91544552 MsG0480023943.01.T01:CDS
GTTTCTTAGAGGACTTGATG+TGG 0.627869 4:-91545199 MsG0480023943.01.T01:CDS
GGTGGTGGAGAAGATGCCAC+AGG 0.628330 4:-91544722 MsG0480023943.01.T01:CDS
ACCATTGGACCAATATCCCT+AGG 0.638044 4:+91545066 None:intergenic
ATTACACCCCATGTAACAGT+AGG 0.644138 4:+91545558 None:intergenic
ACTTCTTCAAAAGTGAGATG+GGG 0.645282 4:-91544555 MsG0480023943.01.T01:CDS
TGATGAAGACTAACCACCTG+TGG 0.651476 4:+91544706 None:intergenic
TGATCCGGAAGGGTTTGCGA+GGG 0.652425 4:-91544743 MsG0480023943.01.T01:CDS
TGAAATGCTATACAGAAGAA+CGG 0.652624 4:-91544266 MsG0480023943.01.T01:CDS
AAACGACATAGTTTCAGATG+AGG 0.658299 4:-91544305 MsG0480023943.01.T01:CDS
ATACTAGCCACATCCTGCGA+TGG 0.661576 4:+91544637 None:intergenic
GGTGGAGAAGATGCCACAGG+TGG 0.679410 4:-91544719 MsG0480023943.01.T01:CDS
GGATACTGAGCAATAACCGA+AGG 0.689064 4:+91544838 None:intergenic
AGAGGCAACCCAATAATCTG+CGG 0.692049 4:+91544817 None:intergenic
GAATTAAACCTAGATACCAG+AGG 0.721224 4:-91544474 MsG0480023943.01.T01:CDS
GAGATGCCTACTGTTACATG+GGG 0.725465 4:-91545564 MsG0480023943.01.T01:CDS
TGCGTGATGAGAATATAGTG+AGG 0.732830 4:+91545730 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CCAAATTTCAAATAATTTTA+GGG - Chr4:91544368-91544387 MsG0480023943.01.T01:CDS 15.0%
!!! CCTAAAATTATTTGAAATTT+GGG + Chr4:91544370-91544389 None:intergenic 15.0%
!!! CTAAAATTATTTGAAATTTG+GGG + Chr4:91544369-91544388 None:intergenic 15.0%
!!! TAAAATTATTTGAAATTTGG+GGG + Chr4:91544368-91544387 None:intergenic 15.0%
!! CAAACTGAAAAAATATTGTT+GGG + Chr4:91545231-91545250 None:intergenic 20.0%
!! TCAAACTGAAAAAATATTGT+TGG + Chr4:91545232-91545251 None:intergenic 20.0%
!! TTGAGTTTATTCAGAAATTA+GGG - Chr4:91544598-91544617 MsG0480023943.01.T01:CDS 20.0%
!! TTGATTACTTGGTTAATTTA+GGG - Chr4:91545018-91545037 MsG0480023943.01.T01:CDS 20.0%
!!! AAAAATATCCTCAACTTTTA+GGG - Chr4:91544856-91544875 MsG0480023943.01.T01:CDS 20.0%
!!! CCCAAATTTCAAATAATTTT+AGG - Chr4:91544367-91544386 MsG0480023943.01.T01:CDS 20.0%
!!! CCCTAAAATTATTTGAAATT+TGG + Chr4:91544371-91544390 None:intergenic 20.0%
!!! TAGGGTATTTAGAAAAAATT+GGG - Chr4:91544694-91544713 MsG0480023943.01.T01:CDS 20.0%
!!! TTAGGGTATTTAGAAAAAAT+TGG - Chr4:91544693-91544712 MsG0480023943.01.T01:CDS 20.0%
! AGAATACTTCACTTATAGTT+TGG - Chr4:91545502-91545521 MsG0480023943.01.T01:CDS 25.0%
! CTAATCAAACAATCAACATT+AGG + Chr4:91545122-91545141 None:intergenic 25.0%
! GTTGAGTTTATTCAGAAATT+AGG - Chr4:91544597-91544616 MsG0480023943.01.T01:CDS 25.0%
! GTTGATTACTTGGTTAATTT+AGG - Chr4:91545017-91545036 MsG0480023943.01.T01:CDS 25.0%
! TAGAAAAAATTGGGATTTCT+AGG - Chr4:91544703-91544722 MsG0480023943.01.T01:CDS 25.0%
! TCAAAATGTGATTATGAAAC+CGG - Chr4:91545319-91545338 MsG0480023943.01.T01:CDS 25.0%
! TTAACCAAGTAATCAACAAA+AGG + Chr4:91545014-91545033 None:intergenic 25.0%
!! AAAAACATGATTCCTGTTTT+AGG - Chr4:91544675-91544694 MsG0480023943.01.T01:CDS 25.0%
!! AAAACATGATTCCTGTTTTA+GGG - Chr4:91544676-91544695 MsG0480023943.01.T01:CDS 25.0%
!! AAACTATAAGTGAAGTATTC+TGG + Chr4:91545503-91545522 None:intergenic 25.0%
!! ATTCAGGAAATTTAGAATCT+TGG + Chr4:91544419-91544438 None:intergenic 25.0%
!! CAAAAATATCCTCAACTTTT+AGG - Chr4:91544855-91544874 MsG0480023943.01.T01:CDS 25.0%
!! TATATTGAAACCGAAAGTAT+AGG - Chr4:91545638-91545657 MsG0480023943.01.T01:CDS 25.0%
!! TTCAGGAAATTTAGAATCTT+GGG + Chr4:91544418-91544437 None:intergenic 25.0%
!! TTTTCTAAATACCCTAAAAC+AGG + Chr4:91544690-91544709 None:intergenic 25.0%
!!! AAATCAGTATCCTTTGATTT+TGG - Chr4:91544638-91544657 MsG0480023943.01.T01:CDS 25.0%
!!! AATCAGTATCCTTTGATTTT+GGG - Chr4:91544639-91544658 MsG0480023943.01.T01:CDS 25.0%
!!! ACACAGTATCCTTATTTTTT+AGG - Chr4:91544963-91544982 MsG0480023943.01.T01:CDS 25.0%
!!! CACAGTATCCTTATTTTTTA+GGG - Chr4:91544964-91544983 MsG0480023943.01.T01:CDS 25.0%
!!! GTTGATTGTTTGATTAGTTT+TGG - Chr4:91545125-91545144 MsG0480023943.01.T01:CDS 25.0%
AATTATTCCTGATGAATTGC+AGG - Chr4:91544533-91544552 MsG0480023943.01.T01:CDS 30.0%
ACTCTCATCCCTAAAAAATA+AGG + Chr4:91544975-91544994 None:intergenic 30.0%
AGTTTAAACCCTAAAAGTTG+AGG + Chr4:91544867-91544886 None:intergenic 30.0%
ATCATCTTCGATTATCTCAA+GGG - Chr4:91544504-91544523 MsG0480023943.01.T01:CDS 30.0%
CCTGTTATTAAGTTTCTTAG+AGG - Chr4:91544795-91544814 MsG0480023943.01.T01:CDS 30.0%
GAAGTGCATTTGGATAAAAT+TGG + Chr4:91544323-91544342 None:intergenic 30.0%
GAGAAAAGAGCTTATTTACT+TGG - Chr4:91545071-91545090 MsG0480023943.01.T01:CDS 30.0%
GGATAAAATGTTCGTTGAAT+TGG - Chr4:91545567-91545586 MsG0480023943.01.T01:CDS 30.0%
GTAGCTTATCTTGTTAGTAT+TGG - Chr4:91544909-91544928 MsG0480023943.01.T01:CDS 30.0%
TACTTCTTCAAAAGTGAGAT+GGG - Chr4:91545449-91545468 MsG0480023943.01.T01:CDS 30.0%
TGAAATGCTATACAGAAGAA+CGG - Chr4:91545739-91545758 MsG0480023943.01.T01:CDS 30.0%
TTACTTCTTCAAAAGTGAGA+TGG - Chr4:91545448-91545467 MsG0480023943.01.T01:CDS 30.0%
! CCTCTAAGAAACTTAATAAC+AGG + Chr4:91544798-91544817 None:intergenic 30.0%
! GTTTTACTCTTCAATCTCTA+TGG - Chr4:91544390-91544409 MsG0480023943.01.T01:CDS 30.0%
! TATTTGAAATTTGGGGGAAA+GGG + Chr4:91544362-91544381 None:intergenic 30.0%
! TTATTTGAAATTTGGGGGAA+AGG + Chr4:91544363-91544382 None:intergenic 30.0%
! TTTGAAGCTTAAGATTGATC+CGG - Chr4:91545247-91545266 MsG0480023943.01.T01:CDS 30.0%
!! AAAGCCTTTTGTTGATTACT+TGG - Chr4:91545007-91545026 MsG0480023943.01.T01:CDS 30.0%
!! TAGTATTGGTGTTAATCCTA+GGG - Chr4:91544923-91544942 MsG0480023943.01.T01:CDS 30.0%
!! TTAGTATTGGTGTTAATCCT+AGG - Chr4:91544922-91544941 MsG0480023943.01.T01:CDS 30.0%
!!! CTTTTAGGGTTTAAACTTGA+AGG - Chr4:91544870-91544889 MsG0480023943.01.T01:CDS 30.0%
!!! GTTTGATTAGTTTTGGTTTG+AGG - Chr4:91545132-91545151 MsG0480023943.01.T01:CDS 30.0%
!!! TATTTTTTAGGGATGAGAGT+TGG - Chr4:91544975-91544994 MsG0480023943.01.T01:CDS 30.0%
AAACGACATAGTTTCAGATG+AGG - Chr4:91545700-91545719 MsG0480023943.01.T01:CDS 35.0%
ACTTCTTCAAAAGTGAGATG+GGG - Chr4:91545450-91545469 MsG0480023943.01.T01:CDS 35.0%
AGATTTGAAGAGAGATTGCA+GGG - Chr4:91545611-91545630 MsG0480023943.01.T01:CDS 35.0%
ATCCTAGCTAGAATCTTCTT+AGG + Chr4:91545047-91545066 None:intergenic 35.0%
CATCATCTTCGATTATCTCA+AGG - Chr4:91544503-91544522 MsG0480023943.01.T01:CDS 35.0%
CTACCAAGTAAAAACTCAAC+CGG + Chr4:91545341-91545360 None:intergenic 35.0%
GAATGAAGGACCTATACTTT+CGG + Chr4:91545651-91545670 None:intergenic 35.0%
GAATTAAACCTAGATACCAG+AGG - Chr4:91545531-91545550 MsG0480023943.01.T01:CDS 35.0%
GATGTGGAGAAAGATGATAT+TGG - Chr4:91544822-91544841 MsG0480023943.01.T01:CDS 35.0%
TAAGGATACTGTGTAACCAT+TGG + Chr4:91544957-91544976 None:intergenic 35.0%
TTCAACCGTTGAAGTTATGA+GGG - Chr4:91544569-91544588 MsG0480023943.01.T01:CDS 35.0%
TTCGATTATCTCAAGGGTTT+GGG - Chr4:91544510-91544529 MsG0480023943.01.T01:CDS 35.0%
! AAACCGGTTGAGTTTTTACT+TGG - Chr4:91545335-91545354 MsG0480023943.01.T01:CDS 35.0%
! GGTTGAGTTTTTACTTGGTA+GGG - Chr4:91545340-91545359 MsG0480023943.01.T01:CDS 35.0%
!!! GATTAGTTTTGGTTTGAGGA+AGG - Chr4:91545136-91545155 MsG0480023943.01.T01:CDS 35.0%
AAGCTTAAGATTGATCCGGA+AGG - Chr4:91545251-91545270 MsG0480023943.01.T01:CDS 40.0%
ACACTACAGCCCAAAATCAA+AGG + Chr4:91544651-91544670 None:intergenic 40.0%
ACACTAGCATGCAAAACTTG+TGG + Chr4:91544759-91544778 None:intergenic 40.0%
ACGTTCCCTCATAACTTCAA+CGG + Chr4:91544577-91544596 None:intergenic 40.0%
AGCTTAAGATTGATCCGGAA+GGG - Chr4:91545252-91545271 MsG0480023943.01.T01:CDS 40.0%
ATAGGTCCTTCATTCCGTAT+TGG - Chr4:91545656-91545675 MsG0480023943.01.T01:CDS 40.0%
ATTACACCCCATGTAACAGT+AGG + Chr4:91544450-91544469 None:intergenic 40.0%
CATAGTTTCAGATGAGGAAG+AGG - Chr4:91545706-91545725 MsG0480023943.01.T01:CDS 40.0%
CTCAGTATCCGCAGATTATT+GGG - Chr4:91545180-91545199 MsG0480023943.01.T01:CDS 40.0%
CTCATAACTTCAACGGTTGA+AGG + Chr4:91544570-91544589 None:intergenic 40.0%
CTTCAACCGTTGAAGTTATG+AGG - Chr4:91544568-91544587 MsG0480023943.01.T01:CDS 40.0%
CTTCGATTATCTCAAGGGTT+TGG - Chr4:91544509-91544528 MsG0480023943.01.T01:CDS 40.0%
GAAGACAATTTAGCCTCAAG+AGG + Chr4:91545209-91545228 None:intergenic 40.0%
GAGATTTGAAGAGAGATTGC+AGG - Chr4:91545610-91545629 MsG0480023943.01.T01:CDS 40.0%
GCAATCTCTCTTCAAATCTC+TGG + Chr4:91545610-91545629 None:intergenic 40.0%
GCTCTAATTTCCCACCAATA+CGG + Chr4:91545673-91545692 None:intergenic 40.0%
GGTGTTAATCCTAGGGATAT+TGG - Chr4:91544930-91544949 MsG0480023943.01.T01:CDS 40.0%
GTTACATGGGGTGTAATTCA+AGG - Chr4:91544453-91544472 MsG0480023943.01.T01:CDS 40.0%
GTTTCTTAGAGGACTTGATG+TGG - Chr4:91544806-91544825 MsG0480023943.01.T01:CDS 40.0%
TCCAAATCCTGCAATTCATC+AGG + Chr4:91544543-91544562 None:intergenic 40.0%
TCCTGATGAATTGCAGGATT+TGG - Chr4:91544539-91544558 MsG0480023943.01.T01:CDS 40.0%
TGCGTGATGAGAATATAGTG+AGG + Chr4:91544278-91544297 None:intergenic 40.0%
! AAATTTGGGGGAAAGGGTTT+TGG + Chr4:91544356-91544375 None:intergenic 40.0%
! AACTCCACAAGCTCTTTTAC+AGG + Chr4:91545479-91545498 None:intergenic 40.0%
! ATTGGATGTGGAAGTGCATT+TGG + Chr4:91544333-91544352 None:intergenic 40.0%
! CGGTTGAGTTTTTACTTGGT+AGG - Chr4:91545339-91545358 MsG0480023943.01.T01:CDS 40.0%
! GAAGATTCTAGCTAGGATGT+TGG - Chr4:91545049-91545068 MsG0480023943.01.T01:CDS 40.0%
! GGGATTTCTAGGTCTAAACT+TGG - Chr4:91544714-91544733 MsG0480023943.01.T01:CDS 40.0%
! TCTGAAACTATGTCGTTTCC+TGG + Chr4:91545698-91545717 None:intergenic 40.0%
! TGATTTTGGGCTGTAGTGTT+CGG - Chr4:91544652-91544671 MsG0480023943.01.T01:CDS 40.0%
! TGCCTAAGAAGATTCTAGCT+AGG - Chr4:91545042-91545061 MsG0480023943.01.T01:CDS 40.0%
!!! AAAGGGTTTTGGATTGGATG+TGG + Chr4:91544345-91544364 None:intergenic 40.0%
ACAGTAGGCATCTCGTATTC+AGG + Chr4:91544435-91544454 None:intergenic 45.0%
ACCATTGGACCAATATCCCT+AGG + Chr4:91544942-91544961 None:intergenic 45.0%
ACGAGATGCCTACTGTTACA+TGG - Chr4:91544439-91544458 MsG0480023943.01.T01:CDS 45.0%
AGAGGCAACCCAATAATCTG+CGG + Chr4:91545191-91545210 None:intergenic 45.0%
ATACCAGAGGCTTAAGAGCA+AGG - Chr4:91545544-91545563 MsG0480023943.01.T01:CDS 45.0%
CAAAGAGAAACTCGTTTCGC+GGG - Chr4:91544479-91544498 MsG0480023943.01.T01:CDS 45.0%
CGAGATGCCTACTGTTACAT+GGG - Chr4:91544440-91544459 MsG0480023943.01.T01:CDS 45.0%
CTCTTAAGCCTCTGGTATCT+AGG + Chr4:91545542-91545561 None:intergenic 45.0%
GAGATGCCTACTGTTACATG+GGG - Chr4:91544441-91544460 MsG0480023943.01.T01:CDS 45.0%
GAGGAAGGAATGTTTGCCTT+CGG - Chr4:91545151-91545170 MsG0480023943.01.T01:CDS 45.0%
GCAAAGAGAAACTCGTTTCG+CGG - Chr4:91544478-91544497 MsG0480023943.01.T01:CDS 45.0%
GCTCAGTATCCGCAGATTAT+TGG - Chr4:91545179-91545198 MsG0480023943.01.T01:CDS 45.0%
GGATACTGAGCAATAACCGA+AGG + Chr4:91545170-91545189 None:intergenic 45.0%
TACCAGAGGCTTAAGAGCAA+GGG - Chr4:91545545-91545564 MsG0480023943.01.T01:CDS 45.0%
TCCTAGGGATATTGGTCCAA+TGG - Chr4:91544938-91544957 MsG0480023943.01.T01:CDS 45.0%
TCTTCAAAAGTGAGATGGGG+AGG - Chr4:91545453-91545472 MsG0480023943.01.T01:CDS 45.0%
TGATGAAGACTAACCACCTG+TGG + Chr4:91545302-91545321 None:intergenic 45.0%
TTCCCACCAATACGGAATGA+AGG + Chr4:91545665-91545684 None:intergenic 45.0%
! GATTATTGGGTTGCCTCTTG+AGG - Chr4:91545193-91545212 MsG0480023943.01.T01:CDS 45.0%
! GTCCTTCATTCCGTATTGGT+GGG - Chr4:91545660-91545679 MsG0480023943.01.T01:CDS 45.0%
ACCAGAGGCTTAAGAGCAAG+GGG - Chr4:91545546-91545565 MsG0480023943.01.T01:CDS 50.0%
ACTCGCAGCGCAATCAATTG+AGG + Chr4:91545407-91545426 None:intergenic 50.0%
ATACTAGCCACATCCTGCGA+TGG + Chr4:91545371-91545390 None:intergenic 50.0%
ATCGCAGGATGTGGCTAGTA+TGG - Chr4:91545370-91545389 MsG0480023943.01.T01:CDS 50.0%
GAGGCCTGTAAAAGAGCTTG+TGG - Chr4:91545472-91545491 MsG0480023943.01.T01:CDS 50.0%
GGTCCTTCATTCCGTATTGG+TGG - Chr4:91545659-91545678 MsG0480023943.01.T01:CDS 50.0%
GGTGGGAAATTAGAGCTACC+AGG - Chr4:91545677-91545696 MsG0480023943.01.T01:CDS 50.0%
!!! TGGGGGAAAGGGTTTTGGAT+TGG + Chr4:91544351-91544370 None:intergenic 50.0%
GGCAATACCATCGCAGGATG+TGG - Chr4:91545361-91545380 MsG0480023943.01.T01:CDS 55.0%
TCCCCTTGCTCTTAAGCCTC+TGG + Chr4:91545550-91545569 None:intergenic 55.0%
TGATCCGGAAGGGTTTGCGA+GGG - Chr4:91545262-91545281 MsG0480023943.01.T01:CDS 55.0%
TGGTAGGGCAATACCATCGC+AGG - Chr4:91545355-91545374 MsG0480023943.01.T01:CDS 55.0%
TTGATCCGGAAGGGTTTGCG+AGG - Chr4:91545261-91545280 MsG0480023943.01.T01:CDS 55.0%
ACCACCCTCGCAAACCCTTC+CGG + Chr4:91545269-91545288 None:intergenic 60.0%
GGTGGAGAAGATGCCACAGG+TGG - Chr4:91545286-91545305 MsG0480023943.01.T01:CDS 60.0%
!! GGTGGTGGAGAAGATGCCAC+AGG - Chr4:91545283-91545302 MsG0480023943.01.T01:CDS 60.0%
GGAAGGGTTTGCGAGGGTGG+TGG - Chr4:91545268-91545287 MsG0480023943.01.T01:CDS 65.0%
TCCGGAAGGGTTTGCGAGGG+TGG - Chr4:91545265-91545284 MsG0480023943.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 91544255 91545772 91544255 ID=MsG0480023943.01;Name=MsG0480023943.01
Chr4 mRNA 91544255 91545772 91544255 ID=MsG0480023943.01.T01;Parent=MsG0480023943.01;Name=MsG0480023943.01.T01;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|505
Chr4 exon 91544255 91545772 91544255 ID=MsG0480023943.01.T01:exon:5205;Parent=MsG0480023943.01.T01
Chr4 CDS 91544255 91545772 91544255 ID=MsG0480023943.01.T01:cds;Parent=MsG0480023943.01.T01
Gene Sequence

>MsG0480023943.01.T01

ATGCTCACAAGAAGAAAATTCCTCACTATATTCTCATCACGCAATGTTTCTAAGCTAATTTCACACCAATTTTATCCAAATGCACTTCCACATCCAATCCAAAACCCTTTCCCCCAAATTTCAAATAATTTTAGGGTTTTACTCTTCAATCTCTATGGAACCCAAGATTCTAAATTTCCTGAATACGAGATGCCTACTGTTACATGGGGTGTAATTCAAGGTCGCAAAGAGAAACTCGTTTCGCGGGTCATCATCTTCGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTTATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGATTGATGATATAAATCAGTATCCTTTGATTTTGGGCTGTAGTGTTCGGAAAAACATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCTAGGTCTAAACTTGGTGAATTTATTAAGAATTATCCACAAGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTTCTTAGAGGACTTGATGTGGAGAAAGATGATATTGGATTTGTGTTGCAAAAATATCCTCAACTTTTAGGGTTTAAACTTGAAGGTACTATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTTTTGTTGATTACTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTGGCTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCTTCGGTTATTGCTCAGTATCCGCAGATTATTGGGTTGCCTCTTGAGGCTAAATTGTCTTCCCAACAATATTTTTTCAGTTTGAAGCTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAAACCGGTTGAGTTTTTACTTGGTAGGGCAATACCATCGCAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAATTGATTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGGCCTGTAAAAGAGCTTGTGGAGTTTCCAGAATACTTCACTTATAGTTTGGAATCAAGAATTAAACCTAGATACCAGAGGCTTAAGAGCAAGGGGATAAAATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCAATTATATTGAAACCGAAAGTATAGGTCCTTCATTCCGTATTGGTGGGAAATTAGAGCTACCAGGAAACGACATAGTTTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACGGTTTCTCTTTAG

Protein sequence

>MsG0480023943.01.T01

MLTRRKFLTIFSSRNVSKLISHQFYPNALPHPIQNPFPQISNNFRVLLFNLYGTQDSKFPEYEMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTIDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPQLLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPFVDYLVNLGLPKKILARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLEAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLIALRVELMKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFRIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL*