Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000385.01.T01 | AFK33311.1 | 93.814 | 97 | 4 | 1 | 24 | 120 | 15 | 109 | 2.63E-42 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000385.01.T01 | Q7XW27 | 56.79 | 81 | 33 | 1 | 30 | 110 | 360 | 438 | 8.40E-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000385.01.T01 | I3RZ69 | 93.814 | 97 | 4 | 1 | 24 | 120 | 15 | 109 | 1.26e-42 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000385.01 | MsG0180000386.01 | 0.806134 | 9.532974e-50 | 5.134310e-47 |
| MsG0180000385.01 | MsG0180000399.01 | 0.810010 | 1.425217e-50 | 8.495783e-48 |
| MsG0180000385.01 | MsG0180001513.01 | 0.802649 | 5.075509e-49 | 2.499564e-46 |
| MsG0180000385.01 | MsG0180002935.01 | 0.804235 | 2.380627e-49 | 1.221029e-46 |
| MsG0180000385.01 | MsG0180003375.01 | 0.828306 | 9.671440e-55 | 9.575861e-52 |
| MsG0180000385.01 | MsG0180005353.01 | 0.809649 | 1.704703e-50 | 1.006557e-47 |
| MsG0180000385.01 | MsG0280009656.01 | 0.809742 | 1.627604e-50 | 9.634243e-48 |
| MsG0180000385.01 | MsG0280010410.01 | 0.832135 | 1.123394e-55 | 1.244357e-52 |
| MsG0180000385.01 | MsG0280010515.01 | 0.816319 | 5.878345e-52 | 4.152037e-49 |
| MsG0180000385.01 | MsG0280011267.01 | 0.823287 | 1.502251e-53 | 1.287952e-50 |
| MsG0180000385.01 | MsG0380011635.01 | 0.828133 | 1.065097e-54 | 1.049320e-51 |
| MsG0180000385.01 | MsG0380011974.01 | 0.834158 | 3.522434e-56 | 4.144810e-53 |
| MsG0180000385.01 | MsG0380015323.01 | 0.835245 | 1.876943e-56 | 2.282202e-53 |
| MsG0180000385.01 | MsG0380015660.01 | 0.801760 | 7.735005e-49 | 3.723965e-46 |
| MsG0180000385.01 | MsG0380017151.01 | 0.800032 | 1.743250e-48 | 8.033713e-46 |
| MsG0180000385.01 | MsG0480018440.01 | 0.800123 | 1.670226e-48 | 7.715180e-46 |
| MsG0180000385.01 | MsG0480018563.01 | 0.801941 | 7.099129e-49 | 3.433654e-46 |
| MsG0180000385.01 | MsG0480019666.01 | 0.810668 | 1.028029e-50 | 6.235118e-48 |
| MsG0180000385.01 | MsG0480022309.01 | 0.800120 | 1.672701e-48 | 7.725889e-46 |
| MsG0180000385.01 | MsG0480022833.01 | 0.818576 | 1.823764e-52 | 1.370345e-49 |
| MsG0180000385.01 | MsG0480023322.01 | 0.802947 | 4.404770e-49 | 2.185767e-46 |
| MsG0180000385.01 | MsG0680031464.01 | 0.800725 | 1.259448e-48 | 5.907150e-46 |
| MsG0180000385.01 | MsG0780037182.01 | 0.809969 | 1.454502e-50 | 8.660792e-48 |
| MsG0180000385.01 | MsG0780038519.01 | 0.807607 | 4.652982e-50 | 2.602976e-47 |
| MsG0180000385.01 | MsG0780038922.01 | 0.804052 | 2.598781e-49 | 1.326769e-46 |
| MsG0180000385.01 | MsG0780039576.01 | 0.817579 | 3.064558e-52 | 2.240384e-49 |
| MsG0180000385.01 | MsG0780039883.01 | 0.801019 | 1.096912e-48 | 5.183720e-46 |
| MsG0180000385.01 | MsG0780039923.01 | 0.800864 | 1.180029e-48 | 5.554361e-46 |
| MsG0180000385.01 | MsG0780040034.01 | 0.800169 | 1.634859e-48 | 7.560385e-46 |
| MsG0180000385.01 | MsG0780040977.01 | 0.808568 | 2.905537e-50 | 1.666925e-47 |
| MsG0180000385.01 | MsG0780040991.01 | 0.804874 | 1.751806e-49 | 9.135528e-47 |
| MsG0180000385.01 | MsG0880047714.01 | 0.841249 | 5.329129e-58 | 7.783660e-55 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000385.01.T01 | MTR_1g016620 | 93.814 | 97 | 4 | 1 | 24 | 120 | 250 | 344 | 2.13e-44 | 147 |
| MsG0180000385.01.T01 | MTR_4g037470 | 56.410 | 78 | 31 | 2 | 31 | 107 | 298 | 373 | 1.34e-19 | 83.2 |
| MsG0180000385.01.T01 | MTR_4g037470 | 56.410 | 78 | 31 | 2 | 31 | 107 | 307 | 382 | 1.37e-19 | 83.2 |
| MsG0180000385.01.T01 | MTR_7g021530 | 50.000 | 80 | 37 | 2 | 30 | 109 | 246 | 322 | 2.02e-19 | 82.0 |
| MsG0180000385.01.T01 | MTR_7g021530 | 49.412 | 85 | 39 | 3 | 30 | 113 | 337 | 418 | 2.35e-19 | 82.4 |
| MsG0180000385.01.T01 | MTR_7g021530 | 49.412 | 85 | 39 | 3 | 30 | 113 | 296 | 377 | 2.35e-19 | 82.4 |
| MsG0180000385.01.T01 | MTR_7g080170 | 50.000 | 82 | 39 | 1 | 30 | 111 | 204 | 283 | 2.88e-19 | 82.0 |
| MsG0180000385.01.T01 | MTR_7g070510 | 45.570 | 79 | 41 | 1 | 30 | 108 | 292 | 368 | 3.40e-19 | 82.0 |
| MsG0180000385.01.T01 | MTR_7g080170 | 50.000 | 82 | 39 | 1 | 30 | 111 | 312 | 391 | 4.79e-19 | 81.6 |
| MsG0180000385.01.T01 | MTR_2g090190 | 57.692 | 78 | 30 | 2 | 31 | 107 | 291 | 366 | 5.86e-18 | 78.6 |
| MsG0180000385.01.T01 | MTR_8g017240 | 52.632 | 76 | 32 | 3 | 30 | 105 | 269 | 340 | 4.82e-17 | 75.5 |
| MsG0180000385.01.T01 | MTR_4g013295 | 43.373 | 83 | 45 | 1 | 30 | 112 | 271 | 351 | 1.41e-16 | 74.3 |
| MsG0180000385.01.T01 | MTR_4g120410 | 38.750 | 80 | 47 | 1 | 30 | 109 | 280 | 357 | 2.33e-13 | 65.1 |
| MsG0180000385.01.T01 | MTR_7g112490 | 43.662 | 71 | 38 | 1 | 35 | 105 | 312 | 380 | 1.85e-12 | 62.8 |
| MsG0180000385.01.T01 | MTR_7g112490 | 43.662 | 71 | 38 | 1 | 35 | 105 | 294 | 362 | 2.47e-12 | 62.4 |
| MsG0180000385.01.T01 | MTR_1g083690 | 43.056 | 72 | 39 | 1 | 34 | 105 | 282 | 351 | 7.58e-12 | 60.8 |
| MsG0180000385.01.T01 | MTR_2g435550 | 38.462 | 78 | 46 | 1 | 33 | 110 | 284 | 359 | 8.76e-12 | 60.8 |
| MsG0180000385.01.T01 | MTR_2g435550 | 38.462 | 78 | 46 | 1 | 33 | 110 | 270 | 345 | 9.42e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000385.01.T01 | AT4G32950 | 60.759 | 79 | 27 | 2 | 33 | 109 | 247 | 323 | 3.37e-23 | 92.0 |
| MsG0180000385.01.T01 | AT5G36250 | 52.439 | 82 | 37 | 1 | 30 | 111 | 312 | 391 | 2.65e-22 | 90.5 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 217 | 290 | 2.90e-22 | 90.1 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 217 | 290 | 2.90e-22 | 90.1 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 217 | 290 | 2.90e-22 | 90.1 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 217 | 290 | 2.90e-22 | 90.1 |
| MsG0180000385.01.T01 | AT5G36250 | 47.872 | 94 | 37 | 1 | 30 | 111 | 312 | 405 | 3.41e-22 | 90.5 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 327 | 400 | 3.86e-22 | 90.5 |
| MsG0180000385.01.T01 | AT1G16220 | 57.895 | 76 | 30 | 1 | 30 | 105 | 304 | 377 | 3.90e-22 | 90.5 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 257 | 330 | 4.35e-22 | 90.1 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 257 | 330 | 4.35e-22 | 90.1 |
| MsG0180000385.01.T01 | AT1G79630 | 59.211 | 76 | 29 | 1 | 30 | 105 | 323 | 396 | 4.61e-22 | 90.1 |
| MsG0180000385.01.T01 | AT4G03415 | 57.692 | 78 | 30 | 2 | 31 | 107 | 300 | 375 | 1.39e-17 | 77.4 |
| MsG0180000385.01.T01 | AT4G03415 | 57.692 | 78 | 30 | 2 | 31 | 107 | 300 | 375 | 1.39e-17 | 77.4 |
| MsG0180000385.01.T01 | AT4G03415 | 57.692 | 78 | 30 | 2 | 31 | 107 | 300 | 375 | 1.39e-17 | 77.4 |
| MsG0180000385.01.T01 | AT1G03590 | 56.410 | 78 | 31 | 2 | 31 | 107 | 290 | 365 | 2.53e-17 | 76.6 |
| MsG0180000385.01.T01 | AT3G02750 | 50.617 | 81 | 38 | 1 | 30 | 110 | 321 | 399 | 2.98e-17 | 76.6 |
| MsG0180000385.01.T01 | AT3G02750 | 50.617 | 81 | 38 | 1 | 30 | 110 | 321 | 399 | 2.98e-17 | 76.6 |
| MsG0180000385.01.T01 | AT3G02750 | 50.617 | 81 | 38 | 1 | 30 | 110 | 356 | 434 | 3.52e-17 | 76.3 |
| MsG0180000385.01.T01 | AT5G01700 | 41.772 | 79 | 44 | 1 | 30 | 108 | 216 | 292 | 5.33e-16 | 72.4 |
| MsG0180000385.01.T01 | AT5G01700 | 41.772 | 79 | 44 | 1 | 30 | 108 | 265 | 341 | 5.43e-16 | 72.8 |
| MsG0180000385.01.T01 | AT5G26010 | 48.148 | 81 | 39 | 2 | 30 | 109 | 251 | 329 | 6.40e-14 | 66.6 |
| MsG0180000385.01.T01 | AT3G16800 | 38.158 | 76 | 45 | 1 | 30 | 105 | 276 | 349 | 5.70e-13 | 64.3 |
| MsG0180000385.01.T01 | AT3G16800 | 38.158 | 76 | 45 | 1 | 30 | 105 | 276 | 349 | 5.70e-13 | 64.3 |
| MsG0180000385.01.T01 | AT3G16800 | 38.158 | 76 | 45 | 1 | 30 | 105 | 276 | 349 | 5.70e-13 | 64.3 |
| MsG0180000385.01.T01 | AT3G16800 | 38.158 | 76 | 45 | 1 | 30 | 105 | 181 | 254 | 5.73e-13 | 63.5 |
| MsG0180000385.01.T01 | AT3G16800 | 38.158 | 76 | 45 | 1 | 30 | 105 | 181 | 254 | 5.73e-13 | 63.5 |
| MsG0180000385.01.T01 | AT5G27930 | 44.928 | 69 | 36 | 1 | 35 | 103 | 287 | 353 | 7.90e-12 | 60.8 |
| MsG0180000385.01.T01 | AT5G27930 | 44.928 | 69 | 36 | 1 | 35 | 103 | 287 | 353 | 7.90e-12 | 60.8 |
Find 36 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACAAAACTTGGAGTATA+TGG | 0.271089 | 1:-5306515 | MsG0180000385.01.T01:CDS |
| GATAGTAGTCAAAGGGTATT+TGG | 0.271723 | 1:-5306842 | MsG0180000385.01.T01:intron |
| TATATGGACAGTGGAAAATT+AGG | 0.305057 | 1:-5306499 | MsG0180000385.01.T01:CDS |
| GTGGTTTCTTCTGCAGGAAA+TGG | 0.397763 | 1:+5306533 | None:intergenic |
| CACTTGCAAGAACAATAAAT+TGG | 0.399587 | 1:+5306796 | None:intergenic |
| ATTGGTCACTTGATGTTAAA+CGG | 0.419251 | 1:+5306814 | None:intergenic |
| ACTCGGCACATGAGTGAGTT+TGG | 0.423881 | 1:-5307211 | None:intergenic |
| TTTATTGTTCTTGCAAGTGA+TGG | 0.439321 | 1:-5306792 | MsG0180000385.01.T01:CDS |
| GCAGAAGAAACCACAAAACT+TGG | 0.461758 | 1:-5306524 | MsG0180000385.01.T01:CDS |
| CCTAGCCTCAACTTCTGTCA+TGG | 0.462474 | 1:+5307144 | None:intergenic |
| CTAGCCTCAACTTCTGTCAT+GGG | 0.465993 | 1:+5307145 | None:intergenic |
| CTTCTTTGCCCATGCAGCTG+TGG | 0.475385 | 1:+5306594 | None:intergenic |
| TTATTGTTCTTGCAAGTGAT+GGG | 0.484730 | 1:-5306791 | MsG0180000385.01.T01:CDS |
| GGAAGCAGCCACAGCTGCAT+GGG | 0.485485 | 1:-5306602 | MsG0180000385.01.T01:CDS |
| GGAAGCTGCAAGGGCAGTGG+TGG | 0.495822 | 1:-5306623 | MsG0180000385.01.T01:CDS |
| GAGTGAAGAGGAAGCTGCAA+GGG | 0.496594 | 1:-5306632 | MsG0180000385.01.T01:CDS |
| CAAAGAAGTTTCCTTCCTCT+AGG | 0.507704 | 1:-5306579 | MsG0180000385.01.T01:CDS |
| TGGAAGCAGCCACAGCTGCA+TGG | 0.533129 | 1:-5306603 | MsG0180000385.01.T01:CDS |
| AAAGAAGTTTCCTTCCTCTA+GGG | 0.562358 | 1:-5306578 | MsG0180000385.01.T01:CDS |
| AGAGGAAGCTGCAAGGGCAG+TGG | 0.574488 | 1:-5306626 | MsG0180000385.01.T01:CDS |
| GACAGAAGTTGAGGCTAGGA+CGG | 0.576331 | 1:-5307140 | MsG0180000385.01.T01:intron |
| TAGCCTCAACTTCTGTCATG+GGG | 0.587508 | 1:+5307146 | None:intergenic |
| CCATGACAGAAGTTGAGGCT+AGG | 0.598676 | 1:-5307144 | MsG0180000385.01.T01:CDS |
| CAATCATCTACCCTAGAGGA+AGG | 0.600898 | 1:+5306568 | None:intergenic |
| AGAGTGAAGAGGAAGCTGCA+AGG | 0.613435 | 1:-5306633 | MsG0180000385.01.T01:CDS |
| TATTGTTCTTGCAAGTGATG+GGG | 0.615238 | 1:-5306790 | MsG0180000385.01.T01:CDS |
| GGTTGCATCAATTGTGTGGA+TGG | 0.622975 | 1:-5306659 | MsG0180000385.01.T01:CDS |
| GTGGATGGTAGAGAGTGAAG+AGG | 0.644994 | 1:-5306644 | MsG0180000385.01.T01:CDS |
| AAGAGGTTGCATCAATTGTG+TGG | 0.658363 | 1:-5306663 | MsG0180000385.01.T01:CDS |
| AAAATACAAATAGAGAGTGG+GGG | 0.671672 | 1:-5307178 | MsG0180000385.01.T01:CDS |
| AACTTGGAGTATATGGACAG+TGG | 0.675658 | 1:-5306508 | MsG0180000385.01.T01:CDS |
| GGATGTACTAAGTAATGAAG+AGG | 0.676441 | 1:-5306680 | MsG0180000385.01.T01:CDS |
| CTGCAGGAAATGGCAAACCA+CGG | 0.691531 | 1:+5306543 | None:intergenic |
| AGCCTCAACTTCTGTCATGG+GGG | 0.697685 | 1:+5307147 | None:intergenic |
| GGTGCAATCATCTACCCTAG+AGG | 0.703711 | 1:+5306564 | None:intergenic |
| TAGGGTAGATGATTGCACCG+TGG | 0.761662 | 1:-5306560 | MsG0180000385.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATGATAGTAGTCAA+AGG | - | Chr1:5306847-5306866 | MsG0180000385.01.T01:intron | 20.0% |
| !! | TATTTATGATAGTAGTCAAA+GGG | - | Chr1:5306848-5306867 | MsG0180000385.01.T01:intron | 20.0% |
| !!! | AATGGCTTTATCATTATTTA+TGG | - | Chr1:5306972-5306991 | MsG0180000385.01.T01:intron | 20.0% |
| !!! | TATGGATATTTTTTGCTTAT+AGG | - | Chr1:5306990-5307009 | MsG0180000385.01.T01:intron | 20.0% |
| ! | AAAAATACAAATAGAGAGTG+GGG | - | Chr1:5306518-5306537 | MsG0180000385.01.T01:CDS | 25.0% |
| ! | CAAAAATACAAATAGAGAGT+GGG | - | Chr1:5306517-5306536 | MsG0180000385.01.T01:CDS | 25.0% |
| ! | GACATAACATACAAATAAAG+TGG | - | Chr1:5306763-5306782 | MsG0180000385.01.T01:intron | 25.0% |
| ! | TAAATTACTCTGATTGAACA+TGG | + | Chr1:5306828-5306847 | None:intergenic | 25.0% |
| !!! | ATATTTTTTGCTTATAGGTG+TGG | - | Chr1:5306995-5307014 | MsG0180000385.01.T01:intron | 25.0% |
| !!! | TATTTTTTGCTTATAGGTGT+GGG | - | Chr1:5306996-5307015 | MsG0180000385.01.T01:intron | 25.0% |
| AAAATACAAATAGAGAGTGG+GGG | - | Chr1:5306519-5306538 | MsG0180000385.01.T01:CDS | 30.0% | |
| ATTGGTCACTTGATGTTAAA+CGG | + | Chr1:5306886-5306905 | None:intergenic | 30.0% | |
| CAAAACTGAAACAAGAGATA+AGG | - | Chr1:5306611-5306630 | MsG0180000385.01.T01:CDS | 30.0% | |
| CACTTGCAAGAACAATAAAT+TGG | + | Chr1:5306904-5306923 | None:intergenic | 30.0% | |
| CCAAAAATACAAATAGAGAG+TGG | - | Chr1:5306516-5306535 | MsG0180000385.01.T01:CDS | 30.0% | |
| CTTGCATACAACAATTTCAA+TGG | - | Chr1:5306954-5306973 | MsG0180000385.01.T01:intron | 30.0% | |
| TATATGGACAGTGGAAAATT+AGG | - | Chr1:5307198-5307217 | MsG0180000385.01.T01:CDS | 30.0% | |
| TTATTGTTCTTGCAAGTGAT+GGG | - | Chr1:5306906-5306925 | MsG0180000385.01.T01:intron | 30.0% | |
| TTTATTGTTCTTGCAAGTGA+TGG | - | Chr1:5306905-5306924 | MsG0180000385.01.T01:intron | 30.0% | |
| ! | CCACTCTCTATTTGTATTTT+TGG | + | Chr1:5306519-5306538 | None:intergenic | 30.0% |
| !! | CTTATCTCTTGTTTCAGTTT+TGG | + | Chr1:5306613-5306632 | None:intergenic | 30.0% |
| !!! | CTCTCTATTTGTATTTTTGG+CGG | + | Chr1:5306516-5306535 | None:intergenic | 30.0% |
| AAAGAAGTTTCCTTCCTCTA+GGG | - | Chr1:5307119-5307138 | MsG0180000385.01.T01:intron | 35.0% | |
| AAATGCATAGCCTTTCTTTG+TGG | - | Chr1:5306652-5306671 | MsG0180000385.01.T01:CDS | 35.0% | |
| AATGCATAGCCTTTCTTTGT+GGG | - | Chr1:5306653-5306672 | MsG0180000385.01.T01:CDS | 35.0% | |
| ACCACAAAACTTGGAGTATA+TGG | - | Chr1:5307182-5307201 | MsG0180000385.01.T01:CDS | 35.0% | |
| GGATGTACTAAGTAATGAAG+AGG | - | Chr1:5307017-5307036 | MsG0180000385.01.T01:intron | 35.0% | |
| TATTGTTCTTGCAAGTGATG+GGG | - | Chr1:5306907-5306926 | MsG0180000385.01.T01:intron | 35.0% | |
| TTACTCTGATTGAACATGGA+TGG | + | Chr1:5306824-5306843 | None:intergenic | 35.0% | |
| ! | TCCATATACTCCAAGTTTTG+TGG | + | Chr1:5307186-5307205 | None:intergenic | 35.0% |
| !! | GATAGTAGTCAAAGGGTATT+TGG | - | Chr1:5306855-5306874 | MsG0180000385.01.T01:intron | 35.0% |
| AAATGTTGCGGACAAGAGTT+TGG | + | Chr1:5306796-5306815 | None:intergenic | 40.0% | |
| AACTTGGAGTATATGGACAG+TGG | - | Chr1:5307189-5307208 | MsG0180000385.01.T01:CDS | 40.0% | |
| AAGAGGTTGCATCAATTGTG+TGG | - | Chr1:5307034-5307053 | MsG0180000385.01.T01:intron | 40.0% | |
| CAAAGAAGTTTCCTTCCTCT+AGG | - | Chr1:5307118-5307137 | MsG0180000385.01.T01:intron | 40.0% | |
| GCAGAAGAAACCACAAAACT+TGG | - | Chr1:5307173-5307192 | MsG0180000385.01.T01:CDS | 40.0% | |
| !! | AGTTTTGTGGTTTCTTCTGC+AGG | + | Chr1:5307173-5307192 | None:intergenic | 40.0% |
| CAATCATCTACCCTAGAGGA+AGG | + | Chr1:5307132-5307151 | None:intergenic | 45.0% | |
| CTAGCCTCAACTTCTGTCAT+GGG | + | Chr1:5306555-5306574 | None:intergenic | 45.0% | |
| GACGGTTAGCAGGGATAAAA+GGG | - | Chr1:5306575-5306594 | MsG0180000385.01.T01:CDS | 45.0% | |
| GGTTGCATCAATTGTGTGGA+TGG | - | Chr1:5307038-5307057 | MsG0180000385.01.T01:intron | 45.0% | |
| GTGGTTTCTTCTGCAGGAAA+TGG | + | Chr1:5307167-5307186 | None:intergenic | 45.0% | |
| TAGCCTCAACTTCTGTCATG+GGG | + | Chr1:5306554-5306573 | None:intergenic | 45.0% | |
| TCGTGTTGTCCCACAAAGAA+AGG | + | Chr1:5306665-5306684 | None:intergenic | 45.0% | |
| TGGATGGTGCAGAAATGTTG+CGG | + | Chr1:5306808-5306827 | None:intergenic | 45.0% | |
| AGAGTGAAGAGGAAGCTGCA+AGG | - | Chr1:5307064-5307083 | MsG0180000385.01.T01:intron | 50.0% | |
| AGCCTCAACTTCTGTCATGG+GGG | + | Chr1:5306553-5306572 | None:intergenic | 50.0% | |
| CCATGACAGAAGTTGAGGCT+AGG | - | Chr1:5306553-5306572 | MsG0180000385.01.T01:CDS | 50.0% | |
| CCTAGCCTCAACTTCTGTCA+TGG | + | Chr1:5306556-5306575 | None:intergenic | 50.0% | |
| CTGCAGGAAATGGCAAACCA+CGG | + | Chr1:5307157-5307176 | None:intergenic | 50.0% | |
| GACAGAAGTTGAGGCTAGGA+CGG | - | Chr1:5306557-5306576 | MsG0180000385.01.T01:CDS | 50.0% | |
| GAGTGAAGAGGAAGCTGCAA+GGG | - | Chr1:5307065-5307084 | MsG0180000385.01.T01:intron | 50.0% | |
| GGACGGTTAGCAGGGATAAA+AGG | - | Chr1:5306574-5306593 | MsG0180000385.01.T01:CDS | 50.0% | |
| GGTGCAATCATCTACCCTAG+AGG | + | Chr1:5307136-5307155 | None:intergenic | 50.0% | |
| GTGGATGGTAGAGAGTGAAG+AGG | - | Chr1:5307053-5307072 | MsG0180000385.01.T01:intron | 50.0% | |
| TAGGGTAGATGATTGCACCG+TGG | - | Chr1:5307137-5307156 | MsG0180000385.01.T01:intron | 50.0% | |
| TTGTGGGACAACACGAGACA+GGG | - | Chr1:5306669-5306688 | MsG0180000385.01.T01:CDS | 50.0% | |
| TTTGTGGGACAACACGAGAC+AGG | - | Chr1:5306668-5306687 | MsG0180000385.01.T01:CDS | 50.0% | |
| CTTCTTTGCCCATGCAGCTG+TGG | + | Chr1:5307106-5307125 | None:intergenic | 55.0% | |
| TGAGGCTAGGACGGTTAGCA+GGG | - | Chr1:5306566-5306585 | MsG0180000385.01.T01:CDS | 55.0% | |
| TTGAGGCTAGGACGGTTAGC+AGG | - | Chr1:5306565-5306584 | MsG0180000385.01.T01:CDS | 55.0% | |
| AGAGGAAGCTGCAAGGGCAG+TGG | - | Chr1:5307071-5307090 | MsG0180000385.01.T01:intron | 60.0% | |
| CGCCCCCATGACAGAAGTTG+AGG | - | Chr1:5306548-5306567 | MsG0180000385.01.T01:CDS | 60.0% | |
| GGAAGCAGCCACAGCTGCAT+GGG | - | Chr1:5307095-5307114 | MsG0180000385.01.T01:intron | 60.0% | |
| GGGACAACACGAGACAGGGT+AGG | - | Chr1:5306673-5306692 | MsG0180000385.01.T01:CDS | 60.0% | |
| TGGAAGCAGCCACAGCTGCA+TGG | - | Chr1:5307094-5307113 | MsG0180000385.01.T01:intron | 60.0% | |
| GGAAGCTGCAAGGGCAGTGG+TGG | - | Chr1:5307074-5307093 | MsG0180000385.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 5306495 | 5307224 | 5306495 | ID=MsG0180000385.01;Name=MsG0180000385.01 |
| Chr1 | mRNA | 5306495 | 5307224 | 5306495 | ID=MsG0180000385.01.T01;Parent=MsG0180000385.01;Name=MsG0180000385.01.T01;_AED=0.50;_eAED=0.67;_QI=0|0|0|1|0|0.66|3|0|120 |
| Chr1 | exon | 5307141 | 5307224 | 5307141 | ID=MsG0180000385.01.T01:exon:2753;Parent=MsG0180000385.01.T01 |
| Chr1 | exon | 5306785 | 5306850 | 5306785 | ID=MsG0180000385.01.T01:exon:2754;Parent=MsG0180000385.01.T01 |
| Chr1 | exon | 5306495 | 5306707 | 5306495 | ID=MsG0180000385.01.T01:exon:2755;Parent=MsG0180000385.01.T01 |
| Chr1 | CDS | 5307141 | 5307224 | 5307141 | ID=MsG0180000385.01.T01:cds;Parent=MsG0180000385.01.T01 |
| Chr1 | CDS | 5306785 | 5306850 | 5306785 | ID=MsG0180000385.01.T01:cds;Parent=MsG0180000385.01.T01 |
| Chr1 | CDS | 5306495 | 5306707 | 5306495 | ID=MsG0180000385.01.T01:cds;Parent=MsG0180000385.01.T01 |
| Gene Sequence |
| Protein sequence |
