AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040034.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040034.01.T01 MTR_7g084330 90.984 122 11 0 56 177 212 333 6.84e-75 228
MsG0780040034.01.T01 MTR_7g084620 84.426 122 19 0 56 177 244 365 3.57e-71 219
MsG0780040034.01.T01 MTR_7g084350 82.645 121 21 0 57 177 245 365 1.86e-67 210
MsG0780040034.01.T01 MTR_3g467560 78.151 119 23 1 57 175 272 387 2.63e-60 192
MsG0780040034.01.T01 MTR_7g084340 72.269 119 33 0 57 175 11 129 1.33e-56 174
MsG0780040034.01.T01 MTR_6g015620 47.407 135 65 3 45 175 4 136 1.59e-34 119
MsG0780040034.01.T01 MTR_3g117060 47.934 121 58 2 58 175 249 367 5.64e-29 110
MsG0780040034.01.T01 MTR_1g022465 40.496 121 64 2 57 175 262 376 1.81e-20 87.4
MsG0780040034.01.T01 MTR_1g022455 38.655 119 70 1 57 175 262 377 1.38e-18 82.0
MsG0780040034.01.T01 MTR_8g077040 33.594 128 77 2 56 177 245 370 8.61e-18 79.7
MsG0780040034.01.T01 MTR_3g467270 32.031 128 79 2 56 177 244 369 3.11e-17 78.2
MsG0780040034.01.T01 MTR_4g018820 34.167 120 72 2 56 175 245 357 9.55e-17 76.6
MsG0780040034.01.T01 MTR_5g020940 34.146 123 77 2 57 175 257 379 1.23e-16 76.6
MsG0780040034.01.T01 MTR_8g076900 31.092 119 78 1 57 175 246 360 4.52e-14 69.3
MsG0780040034.01.T01 MTR_6g056070 30.894 123 75 2 55 177 245 357 2.94e-13 67.0
MsG0780040034.01.T01 MTR_8g020690 30.833 120 76 2 56 175 246 358 8.89e-13 65.5
MsG0780040034.01.T01 MTR_8g020700 28.571 119 75 2 57 175 247 355 5.72e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040034.01.T01 AT1G19640 35.659 129 78 2 52 175 259 387 6.55e-21 88.6
MsG0780040034.01.T01 AT3G11480 36.975 119 68 1 57 175 267 378 9.25e-16 74.3
MsG0780040034.01.T01 AT5G66430 39.806 103 58 2 57 157 235 335 2.02e-14 70.5
MsG0780040034.01.T01 AT5G04370 38.655 119 68 3 57 175 276 389 2.36e-14 70.1
MsG0780040034.01.T01 AT5G04370 38.655 119 68 3 57 175 295 408 2.41e-14 70.5
MsG0780040034.01.T01 AT5G04370 38.655 119 68 3 57 175 281 394 3.65e-14 69.7
MsG0780040034.01.T01 AT5G38020 35.714 112 61 4 55 157 239 348 6.08e-12 63.2
MsG0780040034.01.T01 AT5G38020 36.364 110 59 4 57 157 202 309 6.40e-12 63.2
MsG0780040034.01.T01 AT4G36470 29.167 120 78 1 56 175 257 369 4.53e-11 60.8

Find 44 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCTATTTGATTTGGTTT+TGG 0.173920 7:+72245967 None:intergenic
GTTCTCAAGGTTTGCAAATC+TGG 0.189499 7:-72244798 MsG0780040034.01.T01:CDS
GGGGTGTTCGTGGGTGGGTT+TGG 0.229106 7:-72246007 MsG0780040034.01.T01:CDS
TTTGGTTGAAGAAGCAAAAT+TGG 0.233886 7:-72245068 MsG0780040034.01.T01:CDS
TTACCATATTTAAGGATTCT+TGG 0.269472 7:+72244718 None:intergenic
GGGTGTTCGTGGGTGGGTTT+GGG 0.278342 7:-72246006 MsG0780040034.01.T01:CDS
AACCCAAAACCAAATCAAAT+AGG 0.283352 7:-72245970 MsG0780040034.01.T01:CDS
AATCAACAATATCTTCTTGT+AGG 0.299467 7:+72244927 None:intergenic
CCGGAGTACCCTATTTGATT+TGG 0.311471 7:+72245961 None:intergenic
GTTCGTGGGTGGGTTTGGGT+TGG 0.326876 7:-72246002 MsG0780040034.01.T01:CDS
TTCGTGGGTGGGTTTGGGTT+GGG 0.332070 7:-72246001 MsG0780040034.01.T01:CDS
GCCGCTGCTGGATTGTGCTT+TGG 0.335058 7:+72247886 None:intergenic
GGGTGGGTTTGGGTTGGGTT+TGG 0.350784 7:-72245996 MsG0780040034.01.T01:CDS
GTGCTTTGGTGGTCGCGTTT+TGG 0.353914 7:+72247900 None:intergenic
AGCAGTCTGCGCTCTGCTGT+TGG 0.374041 7:+72247950 None:intergenic
TGTTTCACTTCCTCTATAGT+AGG 0.377591 7:+72245019 None:intergenic
GCGCTCTGCTGTTGGGTGTT+CGG 0.385102 7:+72247958 None:intergenic
TGTCACCAAGCTGCCGCTGC+TGG 0.388947 7:+72247874 None:intergenic
GCAGTCTGCGCTCTGCTGTT+GGG 0.433494 7:+72247951 None:intergenic
ACCCAAAACCAAATCAAATA+GGG 0.438483 7:-72245969 MsG0780040034.01.T01:intron
ATTTAGGGGTGTTCGTGGGT+GGG 0.446284 7:-72246012 MsG0780040034.01.T01:intron
TATTTAGGGGTGTTCGTGGG+TGG 0.463668 7:-72246013 MsG0780040034.01.T01:intron
ATAAACAGCCCTGTGATACT+TGG 0.473009 7:+72244868 None:intergenic
TCTATAGTAGGATGATATAC+AGG 0.482913 7:+72245031 None:intergenic
ACAATCCAGCAGCGGCAGCT+TGG 0.484054 7:-72247879 MsG0780040034.01.T01:intron
AAAAGTCTTCAATGTTTGAA+GGG 0.485869 7:+72244970 None:intergenic
TGTATATCATCCTACTATAG+AGG 0.486196 7:-72245029 MsG0780040034.01.T01:CDS
AATTCATAGCCAAGTATCAC+AGG 0.487711 7:-72244877 MsG0780040034.01.T01:CDS
TAAAAGTCTTCAATGTTTGA+AGG 0.490410 7:+72244969 None:intergenic
ATATGGATGAATTGTTCTCA+AGG 0.499945 7:-72244811 MsG0780040034.01.T01:CDS
ATTATATTTAGGGGTGTTCG+TGG 0.500920 7:-72246017 MsG0780040034.01.T01:intron
GCTGCTGGATTGTGCTTTGG+TGG 0.522983 7:+72247889 None:intergenic
CGGGTTTGGAGAAAACAATA+TGG 0.526147 7:-72244828 MsG0780040034.01.T01:CDS
CCAAACCCGGCTATGAAAAG+AGG 0.536351 7:+72244842 None:intergenic
TTGTCGATAGCAAAATGAGA+GGG 0.543353 7:-72244901 MsG0780040034.01.T01:CDS
ACCAAAGCACAATCCAGCAG+CGG 0.549667 7:-72247887 MsG0780040034.01.T01:CDS
GGAAGTGAAACAAGTGATTG+AGG 0.563062 7:-72245008 MsG0780040034.01.T01:CDS
ACTCATCGAGATAGAGACAT+TGG 0.588186 7:-72244768 MsG0780040034.01.T01:CDS
TTATATTTAGGGGTGTTCGT+GGG 0.588461 7:-72246016 MsG0780040034.01.T01:intron
AAACAAGTGATTGAGGCAGA+AGG 0.616874 7:-72245001 MsG0780040034.01.T01:CDS
GTTGTCGATAGCAAAATGAG+AGG 0.657254 7:-72244902 MsG0780040034.01.T01:CDS
ACGCTGCTACAACCACCGCA+AGG 0.674947 7:-72247923 MsG0780040034.01.T01:CDS
TGTCGATAGCAAAATGAGAG+GGG 0.698320 7:-72244900 MsG0780040034.01.T01:CDS
ATTCATAGCCAAGTATCACA+GGG 0.701859 7:-72244876 MsG0780040034.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATAGTCATTATAAAAA+AGG + Chr7:72246647-72246666 None:intergenic 10.0%
!!! TAATTAAATACATATACTTT+TGG + Chr7:72246103-72246122 None:intergenic 10.0%
!!! TTTTTATCTTTATTTTCATA+GGG + Chr7:72247224-72247243 None:intergenic 10.0%
!!! TTTTTTATCTTTATTTTCAT+AGG + Chr7:72247225-72247244 None:intergenic 10.0%
!!! TTTTTTTTTTTCCTTTTTAA+GGG + Chr7:72246586-72246605 None:intergenic 10.0%
!!! TTTTTTTTTTTTCCTTTTTA+AGG + Chr7:72246587-72246606 None:intergenic 10.0%
!! ACTAAAAATGTCTTATATTT+AGG - Chr7:72245734-72245753 MsG0780040034.01.T01:intron 15.0%
!! AGATAAAAAAAAATAAACCT+TGG - Chr7:72247551-72247570 MsG0780040034.01.T01:intron 15.0%
!! CTAAAAATGTCTTATATTTA+GGG - Chr7:72245735-72245754 MsG0780040034.01.T01:intron 15.0%
!! TAAAATAAATATGGATATGT+TGG - Chr7:72245647-72245666 MsG0780040034.01.T01:intron 15.0%
!!! AATAAATAAGGGTATATTAA+TGG - Chr7:72245525-72245544 MsG0780040034.01.T01:intron 15.0%
!!! ATTAAACAAAATTTTCTGAT+TGG + Chr7:72245968-72245987 None:intergenic 15.0%
!!! ATTTTGAGAAAAAGAAAAAA+TGG - Chr7:72245591-72245610 MsG0780040034.01.T01:intron 15.0%
!!! GTTTTGATTTTCAATATATA+GGG - Chr7:72247107-72247126 MsG0780040034.01.T01:intron 15.0%
!!! GTTTTTATATTTAATCAATG+AGG + Chr7:72246159-72246178 None:intergenic 15.0%
!!! TCAACATATTACATTTTTTT+TGG - Chr7:72247499-72247518 MsG0780040034.01.T01:intron 15.0%
!!! TGTTTTGATTTTCAATATAT+AGG - Chr7:72247106-72247125 MsG0780040034.01.T01:intron 15.0%
!!! TTTTTTTTTTCCTTTTTAAG+GGG + Chr7:72246585-72246604 None:intergenic 15.0%
!! AAAATCTGGGAATATAATTA+GGG + Chr7:72247434-72247453 None:intergenic 20.0%
!! AACTTCTCTCATTATATTTA+GGG - Chr7:72246666-72246685 MsG0780040034.01.T01:intron 20.0%
!! AATTTCTCAAACTTTATATC+GGG + Chr7:72245903-72245922 None:intergenic 20.0%
!! ATAAGGAATCTTAATACAAA+AGG + Chr7:72247594-72247613 None:intergenic 20.0%
!! GAAAACCCATAAAAATAAAT+GGG + Chr7:72247304-72247323 None:intergenic 20.0%
!! GAATTTCTCAAACTTTATAT+CGG + Chr7:72245904-72245923 None:intergenic 20.0%
!! GGATGAAATTCAATAAATAA+GGG - Chr7:72245514-72245533 MsG0780040034.01.T01:intron 20.0%
!! TAACTTCTCTCATTATATTT+AGG - Chr7:72246665-72246684 MsG0780040034.01.T01:intron 20.0%
!! TGGATGAAATTCAATAAATA+AGG - Chr7:72245513-72245532 MsG0780040034.01.T01:intron 20.0%
!! TGTCATAAAGTTTACTATAA+TGG - Chr7:72246534-72246553 MsG0780040034.01.T01:intron 20.0%
!!! AAGATTCCTTATAATTTGTA+GGG - Chr7:72247602-72247621 MsG0780040034.01.T01:intron 20.0%
!!! AATTAATATGTTGCACTTTT+TGG + Chr7:72247073-72247092 None:intergenic 20.0%
!!! ACATATTACATTTTTTTTGG+TGG - Chr7:72247502-72247521 MsG0780040034.01.T01:intron 20.0%
!!! ACATTGAAGACTTTTAATAT+CGG - Chr7:72247731-72247750 MsG0780040034.01.T01:intron 20.0%
!!! ATTGAACAAAATTTTCTGAT+TGG - Chr7:72246466-72246485 MsG0780040034.01.T01:intron 20.0%
!!! TAAGATTCCTTATAATTTGT+AGG - Chr7:72247601-72247620 MsG0780040034.01.T01:intron 20.0%
!!! TAGTTATTACTTTGAAAGTA+AGG + Chr7:72246623-72246642 None:intergenic 20.0%
!!! TTTCTTCTTCTTTTTTTCTT+TGG - Chr7:72247158-72247177 MsG0780040034.01.T01:intron 20.0%
! AAAAGTCTTCAATGTTTGAA+GGG + Chr7:72247726-72247745 None:intergenic 25.0%
! AAACGACTATAATTTAGAGA+CGG + Chr7:72245381-72245400 None:intergenic 25.0%
! AAATCTGGGAATATAATTAG+GGG + Chr7:72247433-72247452 None:intergenic 25.0%
! AATCAACAATATCTTCTTGT+AGG + Chr7:72247769-72247788 None:intergenic 25.0%
! ACTTCTCTCATTATATTTAG+GGG - Chr7:72246667-72246686 MsG0780040034.01.T01:intron 25.0%
! ATAACCACTTGATATACTAT+TGG - Chr7:72246770-72246789 MsG0780040034.01.T01:intron 25.0%
! ATAGAAATGACACAAAATCT+GGG + Chr7:72247447-72247466 None:intergenic 25.0%
! CAAAATCTGGGAATATAATT+AGG + Chr7:72247435-72247454 None:intergenic 25.0%
! CCAAAAAAACCCAAAAAAAT+GGG + Chr7:72247366-72247385 None:intergenic 25.0%
! CTCTAAATTATAGTCGTTTA+AGG - Chr7:72245382-72245401 MsG0780040034.01.T01:intron 25.0%
! GGAAAACCCATAAAAATAAA+TGG + Chr7:72247305-72247324 None:intergenic 25.0%
! TAAAAGTCTTCAATGTTTGA+AGG + Chr7:72247727-72247746 None:intergenic 25.0%
! TAACCACTTGATATACTATT+GGG - Chr7:72246771-72246790 MsG0780040034.01.T01:intron 25.0%
! TATAGAAATGACACAAAATC+TGG + Chr7:72247448-72247467 None:intergenic 25.0%
!! CATAAAAATAAATGGGTTTC+GGG + Chr7:72247297-72247316 None:intergenic 25.0%
!! CCATAAAAATAAATGGGTTT+CGG + Chr7:72247298-72247317 None:intergenic 25.0%
!! CTCTTTTTATAAGACATCTT+TGG + Chr7:72245702-72245721 None:intergenic 25.0%
!! GTACAACAATTTGTATGTTT+TGG - Chr7:72247180-72247199 MsG0780040034.01.T01:intron 25.0%
!! TATTACTTTGAAAGTAAGGT+AGG + Chr7:72246619-72246638 None:intergenic 25.0%
!!! CATTTTTTTGGGTTTTTTTG+GGG - Chr7:72247365-72247384 MsG0780040034.01.T01:intron 25.0%
!!! CCATTTTTTTGGGTTTTTTT+GGG - Chr7:72247364-72247383 MsG0780040034.01.T01:intron 25.0%
!!! CGAAACCCATTTATTTTTAT+GGG - Chr7:72247296-72247315 MsG0780040034.01.T01:intron 25.0%
AAAAACCCAAAAAAATGGGT+TGG + Chr7:72247362-72247381 None:intergenic 30.0%
AACCCAAAACCAAATCAAAT+AGG - Chr7:72246723-72246742 MsG0780040034.01.T01:intron 30.0%
AAGAAAAATGAAGGAGGAAA+GGG - Chr7:72245191-72245210 MsG0780040034.01.T01:intron 30.0%
AAGTGACAATTATTGTGAGA+CGG - Chr7:72245616-72245635 MsG0780040034.01.T01:intron 30.0%
ACCAAACCCTACAAATTATA+AGG + Chr7:72247611-72247630 None:intergenic 30.0%
ACCCAAAACCAAATCAAATA+GGG - Chr7:72246724-72246743 MsG0780040034.01.T01:intron 30.0%
ATATGGATGAATTGTTCTCA+AGG - Chr7:72247882-72247901 MsG0780040034.01.T01:CDS 30.0%
CCACTAACTACAACTAATAA+GGG + Chr7:72245482-72245501 None:intergenic 30.0%
CCCAAAAAAACCCAAAAAAA+TGG + Chr7:72247367-72247386 None:intergenic 30.0%
TCATCATATTCCCCTTAAAA+AGG - Chr7:72246572-72246591 MsG0780040034.01.T01:intron 30.0%
TCCACTAACTACAACTAATA+AGG + Chr7:72245483-72245502 None:intergenic 30.0%
TCCATTCAATCTTCATTGTT+GGG + Chr7:72246246-72246265 None:intergenic 30.0%
TCTATAGTAGGATGATATAC+AGG + Chr7:72247665-72247684 None:intergenic 30.0%
TGAAGAATTGATCATAGAGA+AGG + Chr7:72246078-72246097 None:intergenic 30.0%
TGAGGATTTCTCAATTTCTT+TGG + Chr7:72246141-72246160 None:intergenic 30.0%
TGTATATCATCCTACTATAG+AGG - Chr7:72247664-72247683 MsG0780040034.01.T01:intron 30.0%
TTTGGTTGAAGAAGCAAAAT+TGG - Chr7:72247625-72247644 MsG0780040034.01.T01:intron 30.0%
! AAAACCCAAAAAAATGGGTT+GGG + Chr7:72247361-72247380 None:intergenic 30.0%
! GAGGGAGTCTAAAATAAATA+TGG - Chr7:72245638-72245657 MsG0780040034.01.T01:intron 30.0%
! GATCTGTTTTCAAATCAAGT+TGG + Chr7:72244992-72245011 None:intergenic 30.0%
! TAAGGGTTTCACAATCTTTT+TGG + Chr7:72246181-72246200 None:intergenic 30.0%
! TCCTTATAATTTGTAGGGTT+TGG - Chr7:72247607-72247626 MsG0780040034.01.T01:intron 30.0%
! TGAAGACTTTTAATATCGGT+TGG - Chr7:72247735-72247754 MsG0780040034.01.T01:intron 30.0%
! TTGTTGCAGGTATTTTATGA+TGG + Chr7:72247008-72247027 None:intergenic 30.0%
!! AATATAATTAGGGGTGTTCA+TGG + Chr7:72247424-72247443 None:intergenic 30.0%
!! ATATAATTAGGGGTGTTCAT+GGG + Chr7:72247423-72247442 None:intergenic 30.0%
!! ATGTAACTTTAGTTTGTTGC+AGG + Chr7:72247021-72247040 None:intergenic 30.0%
!! GAAGACTTTTAATATCGGTT+GGG - Chr7:72247736-72247755 MsG0780040034.01.T01:intron 30.0%
!! TTATTTTACCTTACCCAAAC+CGG + Chr7:72246754-72246773 None:intergenic 30.0%
!!! ACCCTATTTGATTTGGTTTT+GGG + Chr7:72246728-72246747 None:intergenic 30.0%
!!! ATTGGGTAAGTGAGTTTTTT+GGG - Chr7:72247255-72247274 MsG0780040034.01.T01:intron 30.0%
!!! ATTTGATTTGGTTTTGGGTT+TGG + Chr7:72246723-72246742 None:intergenic 30.0%
!!! CCCATTTTTTTGGGTTTTTT+TGG - Chr7:72247363-72247382 MsG0780040034.01.T01:intron 30.0%
!!! CCGAAACCCATTTATTTTTA+TGG - Chr7:72247295-72247314 MsG0780040034.01.T01:intron 30.0%
!!! TACCCTATTTGATTTGGTTT+TGG + Chr7:72246729-72246748 None:intergenic 30.0%
!!! TATTGGGTAAGTGAGTTTTT+TGG - Chr7:72247254-72247273 MsG0780040034.01.T01:intron 30.0%
AACCCAACCCAAAAATTAGT+GGG + Chr7:72246811-72246830 None:intergenic 35.0%
AATTCATAGCCAAGTATCAC+AGG - Chr7:72247816-72247835 MsG0780040034.01.T01:intron 35.0%
ACAATGAAGATTGAATGGAG+AGG - Chr7:72246247-72246266 MsG0780040034.01.T01:intron 35.0%
ACAGAAACTGGACATGAAAT+CGG - Chr7:72245019-72245038 MsG0780040034.01.T01:CDS 35.0%
ACCCAACAATGAAGATTGAA+TGG - Chr7:72246242-72246261 MsG0780040034.01.T01:intron 35.0%
AGAAAAATGAAGGAGGAAAG+GGG - Chr7:72245192-72245211 MsG0780040034.01.T01:intron 35.0%
AGATTGTGAAACCCTTATGA+TGG - Chr7:72246184-72246203 MsG0780040034.01.T01:intron 35.0%
AGGAATGAAACTTTAGGTGA+TGG - Chr7:72246267-72246286 MsG0780040034.01.T01:intron 35.0%
AGTTAGTGGAGTAGTTAAGT+TGG - Chr7:72245493-72245512 MsG0780040034.01.T01:intron 35.0%
ATAAGAATTGAGAGCCAAAG+TGG - Chr7:72246319-72246338 MsG0780040034.01.T01:intron 35.0%
ATGGAGAGGAATGAAACTTT+AGG - Chr7:72246261-72246280 MsG0780040034.01.T01:intron 35.0%
ATTCATAGCCAAGTATCACA+GGG - Chr7:72247817-72247836 MsG0780040034.01.T01:intron 35.0%
CACTTGATATACTATTGGGT+GGG - Chr7:72246775-72246794 MsG0780040034.01.T01:intron 35.0%
CCCTTATTAGTTGTAGTTAG+TGG - Chr7:72245479-72245498 MsG0780040034.01.T01:intron 35.0%
CTCCATTCAATCTTCATTGT+TGG + Chr7:72246247-72246266 None:intergenic 35.0%
GAACATAACACGTCATAGTT+AGG + Chr7:72246497-72246516 None:intergenic 35.0%
GAAGAAAAATGAAGGAGGAA+AGG - Chr7:72245190-72245209 MsG0780040034.01.T01:intron 35.0%
GACTATAATTTAGAGACGGA+GGG + Chr7:72245377-72245396 None:intergenic 35.0%
GATTGTGGGAAGAAAAATGA+AGG - Chr7:72245182-72245201 MsG0780040034.01.T01:intron 35.0%
GGAATGAAACTTTAGGTGAT+GGG - Chr7:72246268-72246287 MsG0780040034.01.T01:intron 35.0%
GTTGTGTACATCCATCATAA+GGG + Chr7:72246198-72246217 None:intergenic 35.0%
TGTCTTATATTTAGGGACGA+AGG - Chr7:72245742-72245761 MsG0780040034.01.T01:intron 35.0%
TGTTGTGTACATCCATCATA+AGG + Chr7:72246199-72246218 None:intergenic 35.0%
TGTTTCACTTCCTCTATAGT+AGG + Chr7:72247677-72247696 None:intergenic 35.0%
TTGTCGATAGCAAAATGAGA+GGG - Chr7:72247792-72247811 MsG0780040034.01.T01:intron 35.0%
! AGGGTACAATTTGCATGTTT+TGG - Chr7:72247126-72247145 MsG0780040034.01.T01:intron 35.0%
! ATATACTATTGGGTGGGTTT+GGG - Chr7:72246781-72246800 MsG0780040034.01.T01:intron 35.0%
! CATATTGTTTTCTCCAAACC+CGG + Chr7:72247867-72247886 None:intergenic 35.0%
! GTGGGTATGGTTTCTAAAAA+TGG + Chr7:72247326-72247345 None:intergenic 35.0%
! TATGAACCTCTTTTCATAGC+CGG - Chr7:72247845-72247864 MsG0780040034.01.T01:intron 35.0%
!! ATTATATTTAGGGGTGTTCG+TGG - Chr7:72246676-72246695 MsG0780040034.01.T01:intron 35.0%
!! TTATATTTAGGGGTGTTCGT+GGG - Chr7:72246677-72246696 MsG0780040034.01.T01:intron 35.0%
!!! AAACCCACTAATTTTTGGGT+TGG - Chr7:72246805-72246824 MsG0780040034.01.T01:intron 35.0%
!!! AACCCACTAATTTTTGGGTT+GGG - Chr7:72246806-72246825 MsG0780040034.01.T01:intron 35.0%
!!! CTGTTTTCAAATCAAGTTGG+AGG + Chr7:72244989-72245008 None:intergenic 35.0%
!!! TCAACCCAACCCATTTTTTT+GGG - Chr7:72247354-72247373 MsG0780040034.01.T01:intron 35.0%
!!! TTTTCAAATCAAGTTGGAGG+AGG + Chr7:72244986-72245005 None:intergenic 35.0%
!!! TTTTTGGGTTTTTTTGGGGT+GGG - Chr7:72247369-72247388 MsG0780040034.01.T01:intron 35.0%
!!! TTTTTTGGGTTTTTTTGGGG+TGG - Chr7:72247368-72247387 MsG0780040034.01.T01:intron 35.0%
AAAACGCGAATGGAGCAAAA+CGG - Chr7:72245051-72245070 MsG0780040034.01.T01:CDS 40.0%
AAACAAGTGATTGAGGCAGA+AGG - Chr7:72247692-72247711 MsG0780040034.01.T01:intron 40.0%
ACTCATCGAGATAGAGACAT+TGG - Chr7:72247925-72247944 MsG0780040034.01.T01:CDS 40.0%
AGGTGAGATGGTCACATATT+AGG + Chr7:72244966-72244985 None:intergenic 40.0%
AGTGGTTGGATTTGGATTGT+GGG - Chr7:72245168-72245187 MsG0780040034.01.T01:intron 40.0%
ATAAACAGCCCTGTGATACT+TGG + Chr7:72247828-72247847 None:intergenic 40.0%
CAAATCACAAGCTAAAGCCA+AGG + Chr7:72247571-72247590 None:intergenic 40.0%
CAACCCAACCCAAAAATTAG+TGG + Chr7:72246812-72246831 None:intergenic 40.0%
CCACCCAATAGTATATCAAG+TGG + Chr7:72246777-72246796 None:intergenic 40.0%
CCACTTGATATACTATTGGG+TGG - Chr7:72246774-72246793 MsG0780040034.01.T01:intron 40.0%
CGACTATAATTTAGAGACGG+AGG + Chr7:72245378-72245397 None:intergenic 40.0%
CGGGTTTGGAGAAAACAATA+TGG - Chr7:72247865-72247884 MsG0780040034.01.T01:intron 40.0%
GAAAAATGAAGGAGGAAAGG+GGG - Chr7:72245193-72245212 MsG0780040034.01.T01:intron 40.0%
GACAATTATTGTGAGACGGA+GGG - Chr7:72245620-72245639 MsG0780040034.01.T01:intron 40.0%
GGAAGTGAAACAAGTGATTG+AGG - Chr7:72247685-72247704 MsG0780040034.01.T01:intron 40.0%
GGTCACATATTAGGTGGTTT+CGG + Chr7:72244957-72244976 None:intergenic 40.0%
GTTCTCAAGGTTTGCAAATC+TGG - Chr7:72247895-72247914 MsG0780040034.01.T01:CDS 40.0%
GTTGTCGATAGCAAAATGAG+AGG - Chr7:72247791-72247810 MsG0780040034.01.T01:intron 40.0%
TGACAATTATTGTGAGACGG+AGG - Chr7:72245619-72245638 MsG0780040034.01.T01:intron 40.0%
TGAGATGGTCACATATTAGG+TGG + Chr7:72244963-72244982 None:intergenic 40.0%
TGTCGATAGCAAAATGAGAG+GGG - Chr7:72247793-72247812 MsG0780040034.01.T01:intron 40.0%
TGTGGGAAGAAAAATGAAGG+AGG - Chr7:72245185-72245204 MsG0780040034.01.T01:intron 40.0%
TTCATGTCCAGTTTCTGTTG+CGG + Chr7:72245017-72245036 None:intergenic 40.0%
! AGTCGTTTAAGGTTTGTGCA+CGG - Chr7:72245393-72245412 MsG0780040034.01.T01:intron 40.0%
! ATGAACCTCTTTTCATAGCC+GGG - Chr7:72247846-72247865 MsG0780040034.01.T01:intron 40.0%
! CCAAATCAAATAGGGTACTC+CGG - Chr7:72246732-72246751 MsG0780040034.01.T01:intron 40.0%
! GATATACTATTGGGTGGGTT+TGG - Chr7:72246780-72246799 MsG0780040034.01.T01:intron 40.0%
! GGGCAAACCCACTAATTTTT+GGG - Chr7:72246801-72246820 MsG0780040034.01.T01:intron 40.0%
! TGGGCAAACCCACTAATTTT+TGG - Chr7:72246800-72246819 MsG0780040034.01.T01:intron 40.0%
!! AATGGGTTGGGTTGAGTAAT+TGG + Chr7:72247349-72247368 None:intergenic 40.0%
!! ATGGGTTGGGTTGAGTAATT+GGG + Chr7:72247348-72247367 None:intergenic 40.0%
!! GCTGTTTCTAAACTATGACG+TGG + Chr7:72245946-72245965 None:intergenic 40.0%
!!! ATTTTTGGGTTGGGTTGGAT+TGG - Chr7:72246815-72246834 MsG0780040034.01.T01:intron 40.0%
!!! CACTAATTTTTGGGTTGGGT+TGG - Chr7:72246810-72246829 MsG0780040034.01.T01:intron 40.0%
!!! CTCAACCCAACCCATTTTTT+TGG - Chr7:72247353-72247372 MsG0780040034.01.T01:intron 40.0%
!!! TGGGTTTGACCAGGTTTTTT+GGG - Chr7:72247388-72247407 MsG0780040034.01.T01:intron 40.0%
!!! TTTTTGGGTTGGGTTGGATT+GGG - Chr7:72246816-72246835 MsG0780040034.01.T01:intron 40.0%
AAAGCGGAGTGAACAGTGAA+CGG - Chr7:72245078-72245097 MsG0780040034.01.T01:intron 45.0%
AGATCTGTGCAGATCTGTGT+TGG + Chr7:72244896-72244915 None:intergenic 45.0%
AGTGGTGTTTGGAGGAAAGA+AGG - Chr7:72246337-72246356 MsG0780040034.01.T01:intron 45.0%
ATATTAGGTGGTTTCGGTGG+TGG + Chr7:72244951-72244970 None:intergenic 45.0%
CAAGATGCAGATTCTAGCAG+CGG + Chr7:72245148-72245167 None:intergenic 45.0%
CACATATTAGGTGGTTTCGG+TGG + Chr7:72244954-72244973 None:intergenic 45.0%
CCCACAACCAGAATGTTATG+CGG + Chr7:72246297-72246316 None:intergenic 45.0%
CTTTCCTCCAAACACCACTT+TGG + Chr7:72246336-72246355 None:intergenic 45.0%
GAAGTGTAGAGAGAAGTCAG+AGG - Chr7:72245217-72245236 MsG0780040034.01.T01:intron 45.0%
GAATCTGCATCTTGAGTGGT+TGG - Chr7:72245154-72245173 MsG0780040034.01.T01:intron 45.0%
GAGTGGTTGGATTTGGATTG+TGG - Chr7:72245167-72245186 MsG0780040034.01.T01:intron 45.0%
GCAACGAAACAAAACGCGAA+TGG - Chr7:72245041-72245060 MsG0780040034.01.T01:CDS 45.0%
GCATCTTGAGTGGTTGGATT+TGG - Chr7:72245160-72245179 MsG0780040034.01.T01:intron 45.0%
GCTAGAATCTGCATCTTGAG+TGG - Chr7:72245150-72245169 MsG0780040034.01.T01:intron 45.0%
GTTGAGTAATTGGGTGGGTA+TGG + Chr7:72247339-72247358 None:intergenic 45.0%
TATTAGGTGGTTTCGGTGGT+GGG + Chr7:72244950-72244969 None:intergenic 45.0%
TTGAGAGCCAAAGTGGTGTT+TGG - Chr7:72246326-72246345 MsG0780040034.01.T01:intron 45.0%
TTGGGTCAACCCAAAAAACC+TGG + Chr7:72247400-72247419 None:intergenic 45.0%
! ACCGCATAACATTCTGGTTG+TGG - Chr7:72246293-72246312 MsG0780040034.01.T01:intron 45.0%
! CAAATAGGGTACTCCGGTTT+GGG - Chr7:72246738-72246757 MsG0780040034.01.T01:intron 45.0%
! CCGCATAACATTCTGGTTGT+GGG - Chr7:72246294-72246313 MsG0780040034.01.T01:intron 45.0%
! CCGGAGTACCCTATTTGATT+TGG + Chr7:72246735-72246754 None:intergenic 45.0%
! CGCATAACATTCTGGTTGTG+GGG - Chr7:72246295-72246314 MsG0780040034.01.T01:intron 45.0%
! TCAAATAGGGTACTCCGGTT+TGG - Chr7:72246737-72246756 MsG0780040034.01.T01:intron 45.0%
!! AATTAGGGGTGTTCATGGGT+TGG + Chr7:72247419-72247438 None:intergenic 45.0%
!! ATTAGGGGTGTTCATGGGTT+GGG + Chr7:72247418-72247437 None:intergenic 45.0%
!! CGTTTTTGTTTCCTCGGAGA+CGG - Chr7:72246387-72246406 MsG0780040034.01.T01:intron 45.0%
!! CTGCTGCGTTTTTGTTTCCT+CGG - Chr7:72246381-72246400 MsG0780040034.01.T01:intron 45.0%
!! GTTGGGTTGAGTAATTGGGT+GGG + Chr7:72247344-72247363 None:intergenic 45.0%
!! GTTGGGTTGGATTGGGTAAT+GGG - Chr7:72246823-72246842 MsG0780040034.01.T01:intron 45.0%
!!! GTGGGTTTGACCAGGTTTTT+TGG - Chr7:72247387-72247406 MsG0780040034.01.T01:intron 45.0%
!! AAAAAAATAGAAAAATAAAT+TGG + Chr7:72246853-72246872 None:intergenic 5.0%
!! AAAAAATAGAAAAATAAATT+GGG + Chr7:72246852-72246871 None:intergenic 5.0%
!! ATAAAAAATATTAACATTAT+TGG - Chr7:72247237-72247256 MsG0780040034.01.T01:intron 5.0%
!! TAAAAAATATTAACATTATT+GGG - Chr7:72247238-72247257 MsG0780040034.01.T01:intron 5.0%
!! TAATTTAATAAAATTAAAAC+TGG - Chr7:72245984-72246003 MsG0780040034.01.T01:CDS 5.0%
!! TTAAAAACTAAAAATAAAAA+TGG + Chr7:72246438-72246457 None:intergenic 5.0%
AACGGAGATGCTGAAGAAGG+TGG - Chr7:72245096-72245115 MsG0780040034.01.T01:intron 50.0%
ACCAAAGCACAATCCAGCAG+CGG - Chr7:72244806-72244825 MsG0780040034.01.T01:CDS 50.0%
AGAGCCAAAGTGGTGTTTGG+AGG - Chr7:72246329-72246348 MsG0780040034.01.T01:intron 50.0%
AGATCAGCCGCAACAGAAAC+TGG - Chr7:72245007-72245026 MsG0780040034.01.T01:CDS 50.0%
AGATGCTGAAGAAGGTGGTG+CGG - Chr7:72245101-72245120 MsG0780040034.01.T01:intron 50.0%
ATTAGGTGGTTTCGGTGGTG+GGG + Chr7:72244949-72244968 None:intergenic 50.0%
CCAAACCCGGCTATGAAAAG+AGG + Chr7:72247854-72247873 None:intergenic 50.0%
GTGAACGGAGATGCTGAAGA+AGG - Chr7:72245093-72245112 MsG0780040034.01.T01:intron 50.0%
GTTCACTGTTCACTCCGCTT+TGG + Chr7:72245079-72245098 None:intergenic 50.0%
TGGGCTACCGCATAACATTC+TGG - Chr7:72246287-72246306 MsG0780040034.01.T01:intron 50.0%
TTATTCTCTCACCGTCTCCG+AGG + Chr7:72246401-72246420 None:intergenic 50.0%
! CCTCTTTTCATAGCCGGGTT+TGG - Chr7:72247851-72247870 MsG0780040034.01.T01:intron 50.0%
!! ATTTAGGGGTGTTCGTGGGT+GGG - Chr7:72246681-72246700 MsG0780040034.01.T01:intron 50.0%
!! GGTTGGGTTGAGTAATTGGG+TGG + Chr7:72247345-72247364 None:intergenic 50.0%
!! GGTTGGGTTGGATTGGGTAA+TGG - Chr7:72246822-72246841 MsG0780040034.01.T01:intron 50.0%
!! TATTTAGGGGTGTTCGTGGG+TGG - Chr7:72246680-72246699 MsG0780040034.01.T01:intron 50.0%
!! TCAAGTTGGAGGAGGTGAGA+TGG + Chr7:72244978-72244997 None:intergenic 50.0%
!! TTGGTTTTCCTCCTTCCTGG+CGG + Chr7:72244877-72244896 None:intergenic 50.0%
!!! GTGTTGGTTTTCCTCCTTCC+TGG + Chr7:72244880-72244899 None:intergenic 50.0%
!!! TTTTTGGGGTGGGTTTGACC+AGG - Chr7:72247379-72247398 MsG0780040034.01.T01:intron 50.0%
AAGAAGGTGGTGCGGAGACA+AGG - Chr7:72245109-72245128 MsG0780040034.01.T01:intron 55.0%
GATGCAGATTCTAGCAGCGG+TGG + Chr7:72245145-72245164 None:intergenic 55.0%
GCTGCTGGATTGTGCTTTGG+TGG + Chr7:72244807-72244826 None:intergenic 55.0%
GGAGCAAAACGGAGCCAAAG+CGG - Chr7:72245062-72245081 MsG0780040034.01.T01:CDS 55.0%
! TTCGTGGGTGGGTTTGGGTT+GGG - Chr7:72246692-72246711 MsG0780040034.01.T01:intron 55.0%
!! AGGGTACTCCGGTTTGGGTA+AGG - Chr7:72246743-72246762 MsG0780040034.01.T01:intron 55.0%
!! GTGCTTTGGTGGTCGCGTTT+TGG + Chr7:72244796-72244815 None:intergenic 55.0%
AAGCACAACCACCGCCAGGA+AGG - Chr7:72244863-72244882 MsG0780040034.01.T01:CDS 60.0%
ACAATCCAGCAGCGGCAGCT+TGG - Chr7:72244814-72244833 MsG0780040034.01.T01:CDS 60.0%
ACGCTGCTACAACCACCGCA+AGG - Chr7:72244770-72244789 MsG0780040034.01.T01:CDS 60.0%
AGCAGTCTGCGCTCTGCTGT+TGG + Chr7:72244746-72244765 None:intergenic 60.0%
CTACCACCACCTCACACCAC+CGG - Chr7:72244914-72244933 MsG0780040034.01.T01:CDS 60.0%
GCAGTCTGCGCTCTGCTGTT+GGG + Chr7:72244745-72244764 None:intergenic 60.0%
GCCGCTGCTGGATTGTGCTT+TGG + Chr7:72244810-72244829 None:intergenic 60.0%
GCGCTCTGCTGTTGGGTGTT+CGG + Chr7:72244738-72244757 None:intergenic 60.0%
! ACAGAAGCACAACCACCGCC+AGG - Chr7:72244859-72244878 MsG0780040034.01.T01:CDS 60.0%
! GGGTGTTCGTGGGTGGGTTT+GGG - Chr7:72246687-72246706 MsG0780040034.01.T01:intron 60.0%
! GTTCGTGGGTGGGTTTGGGT+TGG - Chr7:72246691-72246710 MsG0780040034.01.T01:intron 60.0%
! GTTTTCCTCCTTCCTGGCGG+TGG + Chr7:72244874-72244893 None:intergenic 60.0%
!! GGGTGGGTTTGGGTTGGGTT+TGG - Chr7:72246697-72246716 MsG0780040034.01.T01:intron 60.0%
!!! GTGGTCGCGTTTTGGCCTTG+CGG + Chr7:72244788-72244807 None:intergenic 60.0%
CACAACCACCGCCAGGAAGG+AGG - Chr7:72244866-72244885 MsG0780040034.01.T01:CDS 65.0%
TGTCACCAAGCTGCCGCTGC+TGG + Chr7:72244822-72244841 None:intergenic 65.0%
TGTGGTGGTCCGGTGGTGTG+AGG + Chr7:72244926-72244945 None:intergenic 65.0%
! GCGGCAGCTTGGTGACAGTC+AGG - Chr7:72244825-72244844 MsG0780040034.01.T01:CDS 65.0%
! GGGGTGTTCGTGGGTGGGTT+TGG - Chr7:72246686-72246705 MsG0780040034.01.T01:intron 65.0%
!! GTGGTTTCGGTGGTGGGGTG+TGG + Chr7:72244944-72244963 None:intergenic 65.0%
!! GTTTCGGTGGTGGGGTGTGG+TGG + Chr7:72244941-72244960 None:intergenic 65.0%
!!! GTCGCGTTTTGGCCTTGCGG+TGG + Chr7:72244785-72244804 None:intergenic 65.0%
GGTCCGGTGGTGTGAGGTGG+TGG + Chr7:72244920-72244939 None:intergenic 70.0%
GGTGGTCCGGTGGTGTGAGG+TGG + Chr7:72244923-72244942 None:intergenic 70.0%
!! GGTGGTGGGGTGTGGTGGTC+CGG + Chr7:72244936-72244955 None:intergenic 70.0%
GGTGGGGTGTGGTGGTCCGG+TGG + Chr7:72244933-72244952 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 72244727 72247988 72244727 ID=MsG0780040034.01;Name=MsG0780040034.01
Chr7 mRNA 72244727 72247988 72244727 ID=MsG0780040034.01.T01;Parent=MsG0780040034.01;Name=MsG0780040034.01.T01;_AED=0.66;_eAED=0.66;_QI=0|0|0|0.33|1|1|3|0|177
Chr7 exon 72247880 72247988 72247880 ID=MsG0780040034.01.T01:exon:12759;Parent=MsG0780040034.01.T01
Chr7 exon 72245970 72246028 72245970 ID=MsG0780040034.01.T01:exon:12758;Parent=MsG0780040034.01.T01
Chr7 exon 72244727 72245092 72244727 ID=MsG0780040034.01.T01:exon:12757;Parent=MsG0780040034.01.T01
Chr7 CDS 72247880 72247988 72247880 ID=MsG0780040034.01.T01:cds;Parent=MsG0780040034.01.T01
Chr7 CDS 72245970 72246028 72245970 ID=MsG0780040034.01.T01:cds;Parent=MsG0780040034.01.T01
Chr7 CDS 72244727 72245092 72244727 ID=MsG0780040034.01.T01:cds;Parent=MsG0780040034.01.T01
Gene Sequence

>MsG0780040034.01.T01

ATGCGAGACCGAACACCCAACAGCAGAGCGCAGACTGCTGTCGACGCTGCTACAACCACCGCAAGGCCAAAACGCGACCACCAAAGCACAATCCAGCAGCGGCAGCTTGGGGTGTTCGTGGGTGGGTTTGGGTTGGGTTTGGCCAAACCCAAAACCAAATCAAATAGGGGTTTGGTTGAAGAAGCAAAATTGGACTTGTTTAATTTGCCTGTATATCATCCTACTATAGAGGAAGTGAAACAAGTGATTGAGGCAGAAGGATCTTTTACCCTTCAAACATTGAAGACTTTTAATATCGGTTGGGATGCAAACCTACAAGAAGATATTGTTGATTATGTTGTCGATAGCAAAATGAGAGGGGAATTCATAGCCAAGTATCACAGGGCTGTTTATGAACCTCTTTTCATAGCCGGGTTTGGAGAAAACAATATGGATGAATTGTTCTCAAGGTTTGCAAATCTGGTTGCACAACTCATCGAGATAGAGACATTGGAGTTTACTAATATTGTATTGTTCATGACCAAGAATCCTTAA

Protein sequence

>MsG0780040034.01.T01

MRDRTPNSRAQTAVDAATTTARPKRDHQSTIQQRQLGVFVGGFGLGLAKPKTKSNRGLVEEAKLDLFNLPVYHPTIEEVKQVIEAEGSFTLQTLKTFNIGWDANLQEDIVDYVVDSKMRGEFIAKYHRAVYEPLFIAGFGENNMDELFSRFANLVAQLIEIETLEFTNIVLFMTKNP*