AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000645.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000645.01.T01 MTR_1g011280 96.512 172 6 0 45 216 13 184 6.42e-122 343
MsG0180000645.01.T01 MTR_1g011280 99.160 119 1 0 50 168 18 136 1.01e-84 247
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000645.01.T01 AT5G11440 45.045 111 48 3 109 213 43 146 2.36e-19 81.6
MsG0180000645.01.T01 AT5G11440 45.045 111 48 3 109 213 43 146 2.36e-19 81.6
MsG0180000645.01.T01 AT5G25540 53.086 81 33 2 124 204 81 156 1.24e-17 77.4
MsG0180000645.01.T01 AT5G25540 53.086 81 33 2 124 204 81 156 1.24e-17 77.4
MsG0180000645.01.T01 AT5G25540 60.000 45 18 0 124 168 81 125 5.53e-11 58.9

Find 66 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTGATTTGGAATATCTT+AGG 0.249147 1:-9143395 MsG0180000645.01.T01:CDS
GCAGAATCAGCTGGCATAAC+AGG 0.299732 1:+9142150 None:intergenic
CACCTAAAGTAAAACTTTCC+TGG 0.300180 1:+9141994 None:intergenic
ATCAATTCACCATTCACATT+TGG 0.324125 1:+9142061 None:intergenic
GAAGATTCCAAGGACTATAA+TGG 0.336500 1:-9143588 MsG0180000645.01.T01:CDS
TGAAGAGCTTGATATTGATT+TGG 0.356150 1:-9143406 MsG0180000645.01.T01:CDS
TTGCTACACACAATTGGTTT+TGG 0.365984 1:-9142038 MsG0180000645.01.T01:three_prime_UTR
TCTAACATTAGTGTCCCTTT+TGG 0.366851 1:+9143623 None:intergenic
CTTCCAGAGTCGCTGGATAT+TGG 0.369329 1:-9142186 MsG0180000645.01.T01:CDS
TATCTTAGGATGACATTTCC+TGG 0.384113 1:-9143381 MsG0180000645.01.T01:CDS
TTTCAATTGTATGAATTTGA+AGG 0.416754 1:-9141853 MsG0180000645.01.T01:three_prime_UTR
TGTACCTTGGTGAGCAACTT+GGG 0.420122 1:-9141729 MsG0180000645.01.T01:three_prime_UTR
ATTGATTTGCTACACACAAT+TGG 0.422783 1:-9142044 MsG0180000645.01.T01:three_prime_UTR
AAGATTCCAAGGACTATAAT+GGG 0.425801 1:-9143587 MsG0180000645.01.T01:CDS
TGCTCACCAAGGTACAATTC+AGG 0.425971 1:+9141736 None:intergenic
GCTGACAGAGAATCAGTATA+TGG 0.429347 1:-9143430 MsG0180000645.01.T01:CDS
GACAAGTTGCACATCATTTG+TGG 0.436093 1:+9143536 None:intergenic
CCAAGGAAAACCACCTTCAC+TGG 0.436560 1:+9141783 None:intergenic
TACAGTCCCATTATAGTCCT+TGG 0.442789 1:+9143581 None:intergenic
AGGACGTACGCAGCTGCATA+TGG 0.448700 1:+9143650 None:intergenic
CAATGTAAACAGTGGTGACT+TGG 0.452279 1:-9143328 MsG0180000645.01.T01:CDS
AACGCTCAAAGGCTCTCTCC+GGG 0.456586 1:-9143507 MsG0180000645.01.T01:CDS
GAACGCTCAAAGGCTCTCTC+CGG 0.458973 1:-9143508 MsG0180000645.01.T01:CDS
ATGCAGCTGCGTACGTCCTA+TGG 0.459663 1:-9143646 MsG0180000645.01.T01:CDS
GCGTACGTCCTATGGCCAAA+AGG 0.464948 1:-9143638 MsG0180000645.01.T01:CDS
GCGTGCACGTCACGCGCGAC+AGG 0.472303 1:-9144934 MsG0180000645.01.T01:CDS
ACATCATTTGTGGTATATTG+AGG 0.475780 1:+9143546 None:intergenic
TCACCAATATCCAGCGACTC+TGG 0.486657 1:+9142183 None:intergenic
AGGACTATAATGGGACTGTA+TGG 0.501746 1:-9143578 MsG0180000645.01.T01:CDS
AAGGCCAGTGAAAACAAAGT+TGG 0.509045 1:-9141834 MsG0180000645.01.T01:three_prime_UTR
TTGTACCTTGGTGAGCAACT+TGG 0.513138 1:-9141730 MsG0180000645.01.T01:three_prime_UTR
CGTACGTCCTATGGCCAAAA+GGG 0.517466 1:-9143637 MsG0180000645.01.T01:CDS
TTTAAGATTATACCTCAAGT+TGG 0.519886 1:+9143283 None:intergenic
TGGAAGTCTTCCAGAGTCGC+TGG 0.520324 1:-9142193 MsG0180000645.01.T01:CDS
AAACAGAAGAATGCAACAGC+TGG 0.520914 1:-9142120 MsG0180000645.01.T01:CDS
CAAGTGATGAGATGAAGTAC+TGG 0.526656 1:+9142095 None:intergenic
AATTGATTTCCAAATGTGAA+TGG 0.529082 1:-9142070 MsG0180000645.01.T01:three_prime_UTR
GAAAAGTAAGAGCTCGAAGC+AGG 0.531344 1:+9143474 None:intergenic
TTAGGAAGAACAAGACAAGA+AGG 0.539994 1:-9143730 MsG0180000645.01.T01:intron
TTTGATGAAGCAGAATCAGC+TGG 0.546972 1:+9142141 None:intergenic
CGTGCACGTCACGCGCGACA+GGG 0.547588 1:-9144933 MsG0180000645.01.T01:CDS
TTACTGCCTGAATTGTACCT+TGG 0.554744 1:-9141742 MsG0180000645.01.T01:three_prime_UTR
AGTAAGAGCTCGAAGCAGGC+TGG 0.559139 1:+9143478 None:intergenic
GGATTCAAAGAAGACTTTCG+CGG 0.573737 1:+9143671 None:intergenic
GATGATGCTGTTGACGCTCA+TGG 0.575449 1:-9142213 MsG0180000645.01.T01:CDS
TTGTCGAGAAGAACGCTCAA+AGG 0.582696 1:-9143518 MsG0180000645.01.T01:CDS
TTACATTGTAGACATCTACA+AGG 0.595095 1:+9143343 None:intergenic
GTACCTTGGTGAGCAACTTG+GGG 0.602677 1:-9141728 MsG0180000645.01.T01:three_prime_UTR
TAGGAAGAACAAGACAAGAA+GGG 0.606483 1:-9143729 MsG0180000645.01.T01:CDS
TCATTTGTGGTATATTGAGG+AGG 0.614473 1:+9143549 None:intergenic
TTATGTGACAGAAGATTCCA+AGG 0.616516 1:-9143598 MsG0180000645.01.T01:CDS
AAGAAAACAAGACACGGCTG+AGG 0.618958 1:+9141935 None:intergenic
CACGTCACGCGCGACAGGGA+GGG 0.624666 1:-9144929 MsG0180000645.01.T01:CDS
AAATACATATCCAGTGAAGG+TGG 0.626321 1:-9141793 MsG0180000645.01.T01:three_prime_UTR
GCACGTCACGCGCGACAGGG+AGG 0.627803 1:-9144930 MsG0180000645.01.T01:CDS
CAAGCCACCTATCTATCCCA+AGG 0.630501 1:+9141766 None:intergenic
GTCAGCTGTGCCACACTCTG+TGG 0.634116 1:+9143447 None:intergenic
CATATTAAGAAAACAAGACA+CGG 0.644846 1:+9141929 None:intergenic
GGGTGAGAAGCAGCTTCACG+CGG 0.645264 1:-9144909 MsG0180000645.01.T01:intron
GATATAAATAGTGTAAAACC+AGG 0.659196 1:-9142012 MsG0180000645.01.T01:three_prime_UTR
TGAGATGCTAAGCCAACTTG+AGG 0.661491 1:-9143295 MsG0180000645.01.T01:intron
TACATTGTAGACATCTACAA+GGG 0.670208 1:+9143344 None:intergenic
AGGGACTCATCAGATATACC+AGG 0.671666 1:+9143363 None:intergenic
ACGCTCAAAGGCTCTCTCCG+GGG 0.694097 1:-9143506 MsG0180000645.01.T01:CDS
AAACCCCAAGTTGCTCACCA+AGG 0.701377 1:+9141725 None:intergenic
GATGTCTACAATGTAAACAG+TGG 0.761880 1:-9143336 MsG0180000645.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAATAAAAAAAATTGAAAA+TGG + Chr1:9142645-9142664 None:intergenic 10.0%
!!! ATTTTATCTTCTTAATAATT+TGG - Chr1:9141797-9141816 MsG0180000645.01.T01:three_prime_UTR 10.0%
!!! TTTTTATATTTGATTTTCTT+AGG - Chr1:9142879-9142898 MsG0180000645.01.T01:intron 10.0%
!! AAAGTTATAATCTTTGTAAA+TGG - Chr1:9142714-9142733 MsG0180000645.01.T01:intron 15.0%
!! AAATATAATTGTAACTATCA+AGG - Chr1:9143642-9143661 MsG0180000645.01.T01:CDS 15.0%
!! AAGTTATAATCTTTGTAAAT+GGG - Chr1:9142715-9142734 MsG0180000645.01.T01:intron 15.0%
!! ATAAGAATAAGAATAAAAAG+TGG - Chr1:9142063-9142082 MsG0180000645.01.T01:three_prime_UTR 15.0%
!! ATATAAATATCAAGACAATA+TGG + Chr1:9143904-9143923 None:intergenic 15.0%
!!! AATCTTAAATTATTAGCTTT+TGG - Chr1:9143358-9143377 MsG0180000645.01.T01:CDS 15.0%
!!! ATCTTAAATTATTAGCTTTT+GGG - Chr1:9143359-9143378 MsG0180000645.01.T01:CDS 15.0%
!!! TTTTTGCATATATGAATTTT+TGG - Chr1:9142785-9142804 MsG0180000645.01.T01:intron 15.0%
!! AAAAACAAACTCTCAAAAAT+TGG + Chr1:9144379-9144398 None:intergenic 20.0%
!! TGATTGGAATATATGAAAAA+AGG + Chr1:9143410-9143429 None:intergenic 20.0%
!! TTATATTTATAAATCCCGAA+TGG + Chr1:9143630-9143649 None:intergenic 20.0%
!! TTTCAATTGTATGAATTTGA+AGG - Chr1:9144774-9144793 MsG0180000645.01.T01:intron 20.0%
!!! AATTTTTGGTTTTGAATCTT+TGG - Chr1:9142799-9142818 MsG0180000645.01.T01:intron 20.0%
!!! AGAAAAAAAATCACGAATTT+TGG + Chr1:9141863-9141882 None:intergenic 20.0%
!!! ATATTGATTTGGAATATCTT+AGG - Chr1:9143232-9143251 MsG0180000645.01.T01:intron 20.0%
!!! ATTTTTGTTTATCTTGATCT+TGG - Chr1:9142590-9142609 MsG0180000645.01.T01:intron 20.0%
!!! TTACTGTTTGTTTGATTTAA+TGG - Chr1:9142506-9142525 MsG0180000645.01.T01:intron 20.0%
! AAAAATCAATAGCTAAAGCA+TGG + Chr1:9142770-9142789 None:intergenic 25.0%
! AAGTTCTTGATATGATTTCA+TGG - Chr1:9142689-9142708 MsG0180000645.01.T01:intron 25.0%
! AGAATAAGAATAAAAAGTGG+TGG - Chr1:9142066-9142085 MsG0180000645.01.T01:three_prime_UTR 25.0%
! ATAAAATAACAGCGATTTGA+AGG + Chr1:9142399-9142418 None:intergenic 25.0%
! CATATTAAGAAAACAAGACA+CGG + Chr1:9144701-9144720 None:intergenic 25.0%
! GAATAAGAATAAAAAGTGGT+GGG - Chr1:9142067-9142086 MsG0180000645.01.T01:three_prime_UTR 25.0%
! GATATAAATAGTGTAAAACC+AGG - Chr1:9144615-9144634 MsG0180000645.01.T01:intron 25.0%
! TACTCTCATAATCATGTTAA+TGG - Chr1:9144323-9144342 MsG0180000645.01.T01:intron 25.0%
! TTGATCTTGGAAATGTTTAA+GGG - Chr1:9142603-9142622 MsG0180000645.01.T01:intron 25.0%
!! AATTGATTTCCAAATGTGAA+TGG - Chr1:9144557-9144576 MsG0180000645.01.T01:intron 25.0%
!! CTGATTTGAATCTAGTATAT+AGG - Chr1:9144105-9144124 MsG0180000645.01.T01:intron 25.0%
!! TATTTTTCTTCTAACTCGTT+TGG + Chr1:9144819-9144838 None:intergenic 25.0%
!! TTTAAGATTATACCTCAAGT+TGG + Chr1:9143347-9143366 None:intergenic 25.0%
!!! ACATGTTCAGTTTTTGTTTT+AGG - Chr1:9144054-9144073 MsG0180000645.01.T01:intron 25.0%
!!! GAATTATTTTTCCCAGTATA+TGG - Chr1:9142201-9142220 MsG0180000645.01.T01:CDS 25.0%
AAAACAAACATACCAGGAAA+TGG + Chr1:9143942-9143961 None:intergenic 30.0%
AAACAAACATACCAGGAAAT+GGG + Chr1:9143941-9143960 None:intergenic 30.0%
AAGATTCCAAGGACTATAAT+GGG - Chr1:9143040-9143059 MsG0180000645.01.T01:intron 30.0%
ACATCATTTGTGGTATATTG+AGG + Chr1:9143084-9143103 None:intergenic 30.0%
AGAGACTTGATCATTTCATT+TGG - Chr1:9141890-9141909 MsG0180000645.01.T01:three_prime_UTR 30.0%
AGTCTTAAAACAAACATACC+AGG + Chr1:9143948-9143967 None:intergenic 30.0%
ATAAAAGTCACTGAACTGAT+TGG + Chr1:9143527-9143546 None:intergenic 30.0%
ATAAGAGAGAGAAAATGATG+TGG - Chr1:9142137-9142156 MsG0180000645.01.T01:CDS 30.0%
ATCAATTCACCATTCACATT+TGG + Chr1:9144569-9144588 None:intergenic 30.0%
ATTACAGTCACTTAACTGAT+TGG + Chr1:9143426-9143445 None:intergenic 30.0%
ATTGACTGGAAATTATGGTT+AGG - Chr1:9143689-9143708 MsG0180000645.01.T01:CDS 30.0%
CACAAATTGACTGGAAATTA+TGG - Chr1:9143684-9143703 MsG0180000645.01.T01:CDS 30.0%
CATAATTTCCAGTCAATTTG+TGG + Chr1:9143686-9143705 None:intergenic 30.0%
CTTGATCTTGGAAATGTTTA+AGG - Chr1:9142602-9142621 MsG0180000645.01.T01:intron 30.0%
GAAAAATACATATCCAGTGA+AGG - Chr1:9144831-9144850 MsG0180000645.01.T01:intron 30.0%
GACTGTAATTGTAACTATCA+AGG - Chr1:9143437-9143456 MsG0180000645.01.T01:CDS 30.0%
TACATTGTAGACATCTACAA+GGG + Chr1:9143286-9143305 None:intergenic 30.0%
TGATCTTGGAAATGTTTAAG+GGG - Chr1:9142604-9142623 MsG0180000645.01.T01:intron 30.0%
TTACATTGTAGACATCTACA+AGG + Chr1:9143287-9143306 None:intergenic 30.0%
TTAGGATGTGTAGTTAAATG+TGG - Chr1:9143707-9143726 MsG0180000645.01.T01:CDS 30.0%
TTGGAGTGGTAAAAAATGAA+TGG - Chr1:9142110-9142129 MsG0180000645.01.T01:CDS 30.0%
TTTGACTGGAAAATTTGGTT+AGG - Chr1:9143483-9143502 MsG0180000645.01.T01:CDS 30.0%
! AACCAGGAAAGTTTTACTTT+AGG - Chr1:9144631-9144650 MsG0180000645.01.T01:intron 30.0%
! AATGTTCTCTTTTTGATGAG+TGG - Chr1:9144727-9144746 MsG0180000645.01.T01:intron 30.0%
! ACTTCTTTGCTGATTAATGT+TGG - Chr1:9144205-9144224 MsG0180000645.01.T01:intron 30.0%
! TCAGTTCAGTGACTTTTATT+CGG - Chr1:9143528-9143547 MsG0180000645.01.T01:CDS 30.0%
! TGAAGAGCTTGATATTGATT+TGG - Chr1:9143221-9143240 MsG0180000645.01.T01:intron 30.0%
! TTCGATTTGACTGGAAAATT+TGG - Chr1:9143478-9143497 MsG0180000645.01.T01:CDS 30.0%
!! ATTGATTTGCTACACACAAT+TGG - Chr1:9144583-9144602 MsG0180000645.01.T01:intron 30.0%
!!! CGTGTCTTGTTTTCTTAATA+TGG - Chr1:9144699-9144718 MsG0180000645.01.T01:intron 30.0%
!!! GGTATGTTTGTTTTAAGACT+TGG - Chr1:9143948-9143967 MsG0180000645.01.T01:intron 30.0%
!!! TGTTCAGTTTTTGTTTTAGG+TGG - Chr1:9144057-9144076 MsG0180000645.01.T01:intron 30.0%
!!! TTCATTTTTTACCACTCCAA+TGG + Chr1:9142110-9142129 None:intergenic 30.0%
!!! TTTAAGACTTGGTGTTTTTC+TGG - Chr1:9143959-9143978 MsG0180000645.01.T01:intron 30.0%
AAATACATATCCAGTGAAGG+TGG - Chr1:9144834-9144853 MsG0180000645.01.T01:intron 35.0%
AATCAATAGCTAAAGCATGG+TGG + Chr1:9142767-9142786 None:intergenic 35.0%
AGACTATCTTCAGATGACAT+TGG - Chr1:9143785-9143804 MsG0180000645.01.T01:intron 35.0%
ATCATATGCCACAAATTGAC+TGG - Chr1:9143675-9143694 MsG0180000645.01.T01:CDS 35.0%
CACCTAAAGTAAAACTTTCC+TGG + Chr1:9144636-9144655 None:intergenic 35.0%
CAGATCGCTCTCAAAAATTA+GGG - Chr1:9142330-9142349 MsG0180000645.01.T01:intron 35.0%
CTGGAAAATTTGGTTAGGTT+AGG - Chr1:9143488-9143507 MsG0180000645.01.T01:CDS 35.0%
GAAGATTCCAAGGACTATAA+TGG - Chr1:9143039-9143058 MsG0180000645.01.T01:intron 35.0%
GATGTCTACAATGTAAACAG+TGG - Chr1:9143291-9143310 MsG0180000645.01.T01:intron 35.0%
GTGTTGGGAATTGAAAAAGT+GGG - Chr1:9142161-9142180 MsG0180000645.01.T01:CDS 35.0%
TAGGAAGAACAAGACAAGAA+GGG - Chr1:9142898-9142917 MsG0180000645.01.T01:intron 35.0%
TATCTTAGGATGACATTTCC+TGG - Chr1:9143246-9143265 MsG0180000645.01.T01:intron 35.0%
TCAGATCGCTCTCAAAAATT+AGG - Chr1:9142329-9142348 MsG0180000645.01.T01:intron 35.0%
TCATTTGTGGTATATTGAGG+AGG + Chr1:9143081-9143100 None:intergenic 35.0%
TGACTAGACTCTCATACATA+TGG + Chr1:9143606-9143625 None:intergenic 35.0%
TGTCATCTGAAGATAGTCTT+CGG + Chr1:9143784-9143803 None:intergenic 35.0%
TTAGGAAGAACAAGACAAGA+AGG - Chr1:9142897-9142916 MsG0180000645.01.T01:intron 35.0%
TTATGTGACAGAAGATTCCA+AGG - Chr1:9143029-9143048 MsG0180000645.01.T01:intron 35.0%
TTTGCGTAGAGAGAAAACTT+TGG - Chr1:9144295-9144314 MsG0180000645.01.T01:intron 35.0%
! AACCACAAAGCATTACACAT+GGG + Chr1:9144005-9144024 None:intergenic 35.0%
! AGAAAATGATGTGGAGTGTT+GGG - Chr1:9142146-9142165 MsG0180000645.01.T01:CDS 35.0%
! AGTGTTGGGAATTGAAAAAG+TGG - Chr1:9142160-9142179 MsG0180000645.01.T01:CDS 35.0%
! ATCATATGCTTCGATTTGAC+TGG - Chr1:9143469-9143488 MsG0180000645.01.T01:CDS 35.0%
! CAGTTCAGTGACTTTTATTC+GGG - Chr1:9143529-9143548 MsG0180000645.01.T01:CDS 35.0%
! GAAAAGAGTATACACAGGAA+GGG + Chr1:9143757-9143776 None:intergenic 35.0%
! TCTAACATTAGTGTCCCTTT+TGG + Chr1:9143007-9143026 None:intergenic 35.0%
!! AAGAATAAAAAGTGGTGGGT+AGG - Chr1:9142071-9142090 MsG0180000645.01.T01:three_prime_UTR 35.0%
!! AGAATAAAAAGTGGTGGGTA+GGG - Chr1:9142072-9142091 MsG0180000645.01.T01:three_prime_UTR 35.0%
!! ATTGAAAAAGTGGGTGTTGA+AGG - Chr1:9142170-9142189 MsG0180000645.01.T01:CDS 35.0%
!! TTGAAAAAGTGGGTGTTGAA+GGG - Chr1:9142171-9142190 MsG0180000645.01.T01:CDS 35.0%
!! TTGCTACACACAATTGGTTT+TGG - Chr1:9144589-9144608 MsG0180000645.01.T01:intron 35.0%
!!! CAGTTTTTGTTTTAGGTGGA+AGG - Chr1:9144061-9144080 MsG0180000645.01.T01:intron 35.0%
!!! TACACACAATTGGTTTTGGT+TGG - Chr1:9144593-9144612 MsG0180000645.01.T01:intron 35.0%
AAACAGAAGAATGCAACAGC+TGG - Chr1:9144507-9144526 MsG0180000645.01.T01:intron 40.0%
AAGGCCAGTGAAAACAAAGT+TGG - Chr1:9144793-9144812 MsG0180000645.01.T01:intron 40.0%
CAAGTGATGAGATGAAGTAC+TGG + Chr1:9144535-9144554 None:intergenic 40.0%
CAATGTAAACAGTGGTGACT+TGG - Chr1:9143299-9143318 MsG0180000645.01.T01:CDS 40.0%
CCAGTATATGGTCTAAGCTT+CGG - Chr1:9142213-9142232 MsG0180000645.01.T01:CDS 40.0%
CGAAGCTTAGACCATATACT+GGG + Chr1:9142215-9142234 None:intergenic 40.0%
GACAAGTTGCACATCATTTG+TGG + Chr1:9143094-9143113 None:intergenic 40.0%
GAGAAAATGATGTGGAGTGT+TGG - Chr1:9142145-9142164 MsG0180000645.01.T01:CDS 40.0%
GCTGACAGAGAATCAGTATA+TGG - Chr1:9143197-9143216 MsG0180000645.01.T01:intron 40.0%
GGATTCAAAGAAGACTTTCG+CGG + Chr1:9142959-9142978 None:intergenic 40.0%
GTCATCTGAAGATAGTCTTC+GGG + Chr1:9143783-9143802 None:intergenic 40.0%
GTTGAAGTTTACCATTGGAG+TGG - Chr1:9142096-9142115 MsG0180000645.01.T01:CDS 40.0%
TACAGTCCCATTATAGTCCT+TGG + Chr1:9143049-9143068 None:intergenic 40.0%
TGAGAGTCTAGTCAACCATT+CGG - Chr1:9143612-9143631 MsG0180000645.01.T01:CDS 40.0%
TTACTGCCTGAATTGTACCT+TGG - Chr1:9144885-9144904 MsG0180000645.01.T01:intron 40.0%
TTCCCATGTGTAATGCTTTG+TGG - Chr1:9144000-9144019 MsG0180000645.01.T01:intron 40.0%
TTTCTCTATCTGCTTCGCTT+TGG - Chr1:9142361-9142380 MsG0180000645.01.T01:intron 40.0%
TTTGATGAAGCAGAATCAGC+TGG + Chr1:9144489-9144508 None:intergenic 40.0%
! AGGACTATAATGGGACTGTA+TGG - Chr1:9143049-9143068 MsG0180000645.01.T01:intron 40.0%
! CGAAAAGAGTATACACAGGA+AGG + Chr1:9143758-9143777 None:intergenic 40.0%
! GAACCACAAAGCATTACACA+TGG + Chr1:9144006-9144025 None:intergenic 40.0%
! GGAACGAAAAGAGTATACAC+AGG + Chr1:9143762-9143781 None:intergenic 40.0%
! TCGTGTTGTTGAATCTCACA+GGG - Chr1:9143829-9143848 MsG0180000645.01.T01:intron 40.0%
! TGGTTTTCCTTGGGATAGAT+AGG - Chr1:9144854-9144873 MsG0180000645.01.T01:intron 40.0%
! TTTTCCTTGGGATAGATAGG+TGG - Chr1:9144857-9144876 MsG0180000645.01.T01:intron 40.0%
! TTTTGTGCATTCCCATTTCC+TGG - Chr1:9143927-9143946 MsG0180000645.01.T01:intron 40.0%
!! AGGGTGTTGAAGTTTACCAT+TGG - Chr1:9142091-9142110 MsG0180000645.01.T01:exon 40.0%
!!! TTGGCCAACTTTGTTTTCAC+TGG + Chr1:9144800-9144819 None:intergenic 40.0%
AAGAAAACAAGACACGGCTG+AGG + Chr1:9144695-9144714 None:intergenic 45.0%
AGGGACTCATCAGATATACC+AGG + Chr1:9143267-9143286 None:intergenic 45.0%
AGGGGTAAAGATAATGCACG+TGG - Chr1:9141753-9141772 MsG0180000645.01.T01:three_prime_UTR 45.0%
CCGAAGCTTAGACCATATAC+TGG + Chr1:9142216-9142235 None:intergenic 45.0%
GAAAAGTAAGAGCTCGAAGC+AGG + Chr1:9143156-9143175 None:intergenic 45.0%
GAGAGTCTAGTCAACCATTC+GGG - Chr1:9143613-9143632 MsG0180000645.01.T01:CDS 45.0%
TGAGATGCTAAGCCAACTTG+AGG - Chr1:9143332-9143351 MsG0180000645.01.T01:CDS 45.0%
TGCTCACCAAGGTACAATTC+AGG + Chr1:9144894-9144913 None:intergenic 45.0%
TGTACCTTGGTGAGCAACTT+GGG - Chr1:9144898-9144917 MsG0180000645.01.T01:intron 45.0%
TTGAGAGCGATCTGATCGAA+AGG + Chr1:9142324-9142343 None:intergenic 45.0%
TTGGTCGTTCATTCAGTTGC+TGG - Chr1:9144224-9144243 MsG0180000645.01.T01:intron 45.0%
TTGTACCTTGGTGAGCAACT+TGG - Chr1:9144897-9144916 MsG0180000645.01.T01:intron 45.0%
TTGTCGAGAAGAACGCTCAA+AGG - Chr1:9143109-9143128 MsG0180000645.01.T01:intron 45.0%
! CAGTGAAGGTGGTTTTCCTT+GGG - Chr1:9144845-9144864 MsG0180000645.01.T01:intron 45.0%
! CTCGTGTTGTTGAATCTCAC+AGG - Chr1:9143828-9143847 MsG0180000645.01.T01:intron 45.0%
! CTTTTCATCACCACAGAGTG+TGG - Chr1:9143170-9143189 MsG0180000645.01.T01:intron 45.0%
! TTAGTGTCCCTTTTGGCCAT+AGG + Chr1:9143000-9143019 None:intergenic 45.0%
!!! TTTTTAAAATTAATCAATTT+TGG + Chr1:9141974-9141993 None:intergenic 5.0%
AAACCCCAAGTTGCTCACCA+AGG + Chr1:9144905-9144924 None:intergenic 50.0%
CAAGCCACCTATCTATCCCA+AGG + Chr1:9144864-9144883 None:intergenic 50.0%
CCAAGGAAAACCACCTTCAC+TGG + Chr1:9144847-9144866 None:intergenic 50.0%
CGTACGTCCTATGGCCAAAA+GGG - Chr1:9142990-9143009 MsG0180000645.01.T01:intron 50.0%
CTTCCAGAGTCGCTGGATAT+TGG - Chr1:9144441-9144460 MsG0180000645.01.T01:intron 50.0%
GATGATGCTGTTGACGCTCA+TGG - Chr1:9144414-9144433 MsG0180000645.01.T01:intron 50.0%
GCAGAATCAGCTGGCATAAC+AGG + Chr1:9144480-9144499 None:intergenic 50.0%
GTACCTTGGTGAGCAACTTG+GGG - Chr1:9144899-9144918 MsG0180000645.01.T01:intron 50.0%
TCACCAATATCCAGCGACTC+TGG + Chr1:9144447-9144466 None:intergenic 50.0%
TGTTGAATCTCACAGGGTGC+TGG - Chr1:9143835-9143854 MsG0180000645.01.T01:intron 50.0%
! CCAGTGAAGGTGGTTTTCCT+TGG - Chr1:9144844-9144863 MsG0180000645.01.T01:intron 50.0%
! TGCACGTGGCTTGCATTGAT+TGG - Chr1:9141767-9141786 MsG0180000645.01.T01:three_prime_UTR 50.0%
!! GGCTTGCATTGATTGGTGCT+TGG - Chr1:9141774-9141793 MsG0180000645.01.T01:three_prime_UTR 50.0%
AACGCTCAAAGGCTCTCTCC+GGG - Chr1:9143120-9143139 MsG0180000645.01.T01:intron 55.0%
ACGCGGTGAGAGAAAGGAAG+GGG - Chr1:9141735-9141754 MsG0180000645.01.T01:three_prime_UTR 55.0%
AGCTTCACGCGGTGAGAGAA+AGG - Chr1:9141729-9141748 MsG0180000645.01.T01:three_prime_UTR 55.0%
AGGACGTACGCAGCTGCATA+TGG + Chr1:9142980-9142999 None:intergenic 55.0%
AGTAAGAGCTCGAAGCAGGC+TGG + Chr1:9143152-9143171 None:intergenic 55.0%
ATGCAGCTGCGTACGTCCTA+TGG - Chr1:9142981-9143000 MsG0180000645.01.T01:intron 55.0%
CACGCGGTGAGAGAAAGGAA+GGG - Chr1:9141734-9141753 MsG0180000645.01.T01:three_prime_UTR 55.0%
GAACGCTCAAAGGCTCTCTC+CGG - Chr1:9143119-9143138 MsG0180000645.01.T01:intron 55.0%
GCGTACGTCCTATGGCCAAA+AGG - Chr1:9142989-9143008 MsG0180000645.01.T01:intron 55.0%
TCACGCGGTGAGAGAAAGGA+AGG - Chr1:9141733-9141752 MsG0180000645.01.T01:three_prime_UTR 55.0%
TGGAAGTCTTCCAGAGTCGC+TGG - Chr1:9144434-9144453 MsG0180000645.01.T01:intron 55.0%
!! AATCTCACAGGGTGCTGGCT+AGG - Chr1:9143840-9143859 MsG0180000645.01.T01:intron 55.0%
!!! GAAGCAGGCTGGTTTTTCCC+CGG + Chr1:9143141-9143160 None:intergenic 55.0%
ACGCTCAAAGGCTCTCTCCG+GGG - Chr1:9143121-9143140 MsG0180000645.01.T01:intron 60.0%
GGGTGAGAAGCAGCTTCACG+CGG - Chr1:9141718-9141737 MsG0180000645.01.T01:three_prime_UTR 60.0%
GTCAGCTGTGCCACACTCTG+TGG + Chr1:9143183-9143202 None:intergenic 60.0%
CACGTCACGCGCGACAGGGA+GGG - Chr1:9141698-9141717 MsG0180000645.01.T01:three_prime_UTR 70.0%
CGTGCACGTCACGCGCGACA+GGG - Chr1:9141694-9141713 MsG0180000645.01.T01:three_prime_UTR 70.0%
GCACGTCACGCGCGACAGGG+AGG - Chr1:9141697-9141716 MsG0180000645.01.T01:three_prime_UTR 75.0%
GCGTGCACGTCACGCGCGAC+AGG - Chr1:9141693-9141712 MsG0180000645.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 9141689 9144960 9141689 ID=MsG0180000645.01;Name=MsG0180000645.01
Chr1 mRNA 9141689 9144960 9141689 ID=MsG0180000645.01.T01;Parent=MsG0180000645.01;Name=MsG0180000645.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.5|0.66|0.66|0.5|0.66|3|403|216
Chr1 exon 9144910 9144960 9144910 ID=MsG0180000645.01.T01:exon:2035;Parent=MsG0180000645.01.T01
Chr1 exon 9143296 9143748 9143296 ID=MsG0180000645.01.T01:exon:2036;Parent=MsG0180000645.01.T01
Chr1 exon 9141689 9142238 9141689 ID=MsG0180000645.01.T01:exon:2037;Parent=MsG0180000645.01.T01
Chr1 CDS 9144910 9144960 9144910 ID=MsG0180000645.01.T01:cds;Parent=MsG0180000645.01.T01
Chr1 CDS 9143296 9143748 9143296 ID=MsG0180000645.01.T01:cds;Parent=MsG0180000645.01.T01
Chr1 CDS 9142092 9142238 9142092 ID=MsG0180000645.01.T01:cds;Parent=MsG0180000645.01.T01
Chr1 three_prime_UTR 9141689 9142091 9141689 ID=MsG0180000645.01.T01:three_prime_utr;Parent=MsG0180000645.01.T01
Gene Sequence

>MsG0180000645.01.T01

ATGGGCGTGCACGTCACGCGCGACAGGGAGGGTGAGAAGCAGCTTCACGCGGAAGAACAAGACAAGAAGGGTTGTTTGTCTCTGATTTTACAGCAACATGATGAAGCCGCGAAAGTCTTCTTTGAATCCATATGCAGCTGCGTACGTCCTATGGCCAAAAGGGACACTAATGTTAGAAGTTATGTGACAGAAGATTCCAAGGACTATAATGGGACTGTATGGTTTCAGCCTCCTCAATATACCACAAATGATGTGCAACTTGTCGAGAAGAACGCTCAAAGGCTCTCTCCGGGGAAAAACCAGCCTGCTTCGAGCTCTTACTTTTCATCACCACAGAGTGTGGCACAGCTGACAGAGAATCAGTATATGGATGAAGAGCTTGATATTGATTTGGAATATCTTAGGATGACATTTCCTGGTATATCTGATGAGTCCCTTGTAGATGTCTACAATGTAAACAGTGGTGACTTGGAAGCTGCTATTGAGATGCTAAGCCAACTTGAGTTTGATGATGCTGTTGACGCTCATGGAAGTCTTCCAGAGTCGCTGGATATTGGTGATGTTTCAGAGCCTGTTATGCCAGCTGATTCTGCTTCATCAAAACAGAAGAATGCAACAGCTGGAGCCAGTACTTCATCTCATCACTTGTGA
Protein sequence

>MsG0180000645.01.T01

MGVHVTRDREGEKQLHAEEQDKKGCLSLILQQHDEAAKVFFESICSCVRPMAKRDTNVRSYVTEDSKDYNGTVWFQPPQYTTNDVQLVEKNAQRLSPGKNQPASSSYFSSPQSVAQLTENQYMDEELDIDLEYLRMTFPGISDESLVDVYNVNSGDLEAAIEMLSQLEFDDAVDAHGSLPESLDIGDVSEPVMPADSASSKQKNATAGASTSSHHL*