AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045106.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045106.01.T01 MTR_8g065050 88.991 218 8 1 1 202 1 218 4.84e-143 397
MsG0880045106.01.T01 MTR_1g084740 62.727 220 61 5 1 200 1 219 7.60e-94 273
MsG0880045106.01.T01 MTR_1g084740 53.922 204 54 5 1 200 1 168 3.78e-67 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045106.01.T01 AT1G23440 65.138 218 59 2 1 202 1 217 2.44e-100 289
MsG0880045106.01.T01 AT1G23440 65.138 218 59 2 1 202 1 217 2.44e-100 289
MsG0880045106.01.T01 AT1G56700 57.991 219 74 3 1 202 1 218 1.10e-89 262
MsG0880045106.01.T01 AT1G56700 57.991 219 74 3 1 202 1 218 1.10e-89 262
MsG0880045106.01.T01 AT1G56700 57.991 219 74 3 1 202 1 218 1.10e-89 262
MsG0880045106.01.T01 AT1G56700 55.789 190 66 3 30 202 1 189 1.71e-72 218
MsG0880045106.01.T01 AT1G23440 62.222 90 34 0 1 90 1 90 2.68e-35 120

Find 57 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCGATTCTCGAAAATA+AGG 0.171114 8:+54308877 None:intergenic
ATAATCTCTGTAGGGTTTAT+TGG 0.189118 8:+54311515 None:intergenic
AATCTTGAAATCCTTGAAAA+AGG 0.203646 8:-54309020 MsG0880045106.01.T01:CDS
AAAATTACAATTCATGTAAC+TGG 0.219675 8:-54311560 MsG0880045106.01.T01:CDS
TTCCGCTGTTCTGATGAATT+AGG 0.270479 8:-54310155 MsG0880045106.01.T01:CDS
GAGATTTACAGCCTCTCTTT+TGG 0.294280 8:-54308843 MsG0880045106.01.T01:CDS
AGAGTAATGCAAATGTTGTT+TGG 0.313563 8:-54311343 MsG0880045106.01.T01:CDS
AATTCATGAACATCGGTTCT+TGG 0.324677 8:-54308629 MsG0880045106.01.T01:three_prime_UTR
CTTCCAGTTGGTGTTACTCT+TGG 0.368291 8:-54311455 MsG0880045106.01.T01:CDS
AAGAATTCAGAATTCAGAAA+TGG 0.372313 8:-54311600 MsG0880045106.01.T01:exon
GAGTAATGCAAATGTTGTTT+GGG 0.392945 8:-54311342 MsG0880045106.01.T01:intron
GCCATGTCCACTCTGTCATC+TGG 0.399687 8:-54308765 MsG0880045106.01.T01:three_prime_UTR
TCATCGATTCTCGAAAATAA+GGG 0.399792 8:+54308878 None:intergenic
ATGTGTATTACCACTCTCTT+CGG 0.421496 8:-54308943 MsG0880045106.01.T01:CDS
ATTTATGCTTCAGCTTCACT+TGG 0.429836 8:-54310237 MsG0880045106.01.T01:intron
TTTATGCTTCAGCTTCACTT+GGG 0.439902 8:-54310236 MsG0880045106.01.T01:intron
CTTCCAAGAGTAACACCAAC+TGG 0.451339 8:+54311452 None:intergenic
ACTGGGTTTAAGAAGTTTCA+AGG 0.460584 8:-54311542 MsG0880045106.01.T01:CDS
TTATTAACAATAATCTCTGT+AGG 0.465678 8:+54311506 None:intergenic
GATTTCAAGATTGCATCAAC+AGG 0.476405 8:+54309031 None:intergenic
AGAATTCAGAATTCAGAAAT+GGG 0.477928 8:-54311599 MsG0880045106.01.T01:exon
TGCACTATTCTTGACGTGGC+TGG 0.492051 8:-54311428 MsG0880045106.01.T01:CDS
AGGGATTATGTTGAAAAGAA+AGG 0.499009 8:-54311479 MsG0880045106.01.T01:CDS
GGAATCTGTTGTGTCGAAAA+CGG 0.508223 8:-54311372 MsG0880045106.01.T01:CDS
ATTCGCTGCCAACCGCTCAA+TGG 0.508415 8:+54310187 None:intergenic
AAGGTTTGCCATTGAGCGGT+TGG 0.517019 8:-54310195 MsG0880045106.01.T01:CDS
TTATGCTTCAGCTTCACTTG+GGG 0.520510 8:-54310235 MsG0880045106.01.T01:intron
TTTCGACACAACAGATTCCA+TGG 0.522218 8:+54311376 None:intergenic
TCTTCGGTTCGCAGAACAGA+AGG 0.529048 8:-54308927 MsG0880045106.01.T01:CDS
AATTCAGAAATGGGATCTGA+AGG 0.532059 8:-54311590 MsG0880045106.01.T01:exon
ATTCTTGACGTGGCTGGTGA+TGG 0.533255 8:-54311422 MsG0880045106.01.T01:CDS
CTGCAAGGTTTGCCATTGAG+CGG 0.540890 8:-54310199 MsG0880045106.01.T01:CDS
AGATTATTGTTAATAATCTG+AGG 0.547702 8:-54311499 MsG0880045106.01.T01:CDS
TATTAACAATAATCTCTGTA+GGG 0.553359 8:+54311507 None:intergenic
AAATTACAATTCATGTAACT+GGG 0.560230 8:-54311559 MsG0880045106.01.T01:CDS
ACCAGATGACAGAGTGGACA+TGG 0.572964 8:+54308764 None:intergenic
TATGCTTCAGCTTCACTTGG+GGG 0.574889 8:-54310234 MsG0880045106.01.T01:intron
GTCACACTTCGTGAATTCCC+AGG 0.577319 8:-54311966 MsG0880045106.01.T01:intron
TCCTCAGCTTTATCAGACCA+TGG 0.578488 8:-54311393 MsG0880045106.01.T01:CDS
GATTATTGTTAATAATCTGA+GGG 0.580790 8:-54311498 MsG0880045106.01.T01:CDS
GAAAAGAAAGGTCTTCCAGT+TGG 0.590107 8:-54311467 MsG0880045106.01.T01:CDS
GATTGCACAGATATATATGC+TGG 0.605384 8:-54308607 MsG0880045106.01.T01:three_prime_UTR
TTATTAACATGCAGAAGCAA+TGG 0.607143 8:+54308817 None:intergenic
TTATGACGTGATGATATCAC+AGG 0.624899 8:-54308990 MsG0880045106.01.T01:CDS
GATGTATAATTCATGAACAT+CGG 0.626078 8:-54308636 MsG0880045106.01.T01:three_prime_UTR
GGGTGAACAGTGGAGCTGCA+AGG 0.626140 8:-54310214 MsG0880045106.01.T01:CDS
ATTCAGAAATGGGATCTGAA+GGG 0.630200 8:-54311589 MsG0880045106.01.T01:exon
CTTCGGTTCGCAGAACAGAA+GGG 0.630794 8:-54308926 MsG0880045106.01.T01:CDS
GCTGTTCTGATGAATTAGGA+TGG 0.630988 8:-54310151 MsG0880045106.01.T01:CDS
AATTGATTGAATTGTATGCA+AGG 0.637455 8:-54308791 MsG0880045106.01.T01:three_prime_UTR
AGCAATGGCCTCCAAAAGAG+AGG 0.639282 8:+54308832 None:intergenic
AAGTTGCACTATTCTTGACG+TGG 0.643245 8:-54311432 MsG0880045106.01.T01:CDS
TCCATGGTCTGATAAAGCTG+AGG 0.663058 8:+54311392 None:intergenic
ATCCTAATTCATCAGAACAG+CGG 0.674516 8:+54310153 None:intergenic
GTTCTGCGAACCGAAGAGAG+TGG 0.713903 8:+54308933 None:intergenic
TACACAACCAGATGACAGAG+TGG 0.726009 8:+54308758 None:intergenic
GTGATGATATCACAGGACGC+AGG 0.742675 8:-54308983 MsG0880045106.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAATAAATTAAACATA+AGG + Chr8:54308745-54308764 None:intergenic 10.0%
!!! ATTTATTACTACAATTTTAA+AGG + Chr8:54309672-54309691 None:intergenic 10.0%
!! AAAAAGTTTAAACGAAAATT+GGG - Chr8:54308970-54308989 MsG0880045106.01.T01:CDS 15.0%
!! AATAAATAGCATATAAGTAT+AGG - Chr8:54309685-54309704 MsG0880045106.01.T01:intron 15.0%
!! ATTGAATTGTATTAGAAATT+TGG - Chr8:54309804-54309823 MsG0880045106.01.T01:intron 15.0%
!! TAAAAAGTTTAAACGAAAAT+TGG - Chr8:54308969-54308988 MsG0880045106.01.T01:CDS 15.0%
!! TGAAAAGTAAAATCTTTATT+CGG + Chr8:54310899-54310918 None:intergenic 15.0%
!! TTCTATTATAAAAATAATCC+AGG + Chr8:54310333-54310352 None:intergenic 15.0%
!!! TTATGTTTTATAGATGAAAT+TGG - Chr8:54310506-54310525 MsG0880045106.01.T01:intron 15.0%
!!! TTTATTTTGTCTTTTGTTAT+AGG - Chr8:54309423-54309442 MsG0880045106.01.T01:intron 15.0%
!! AAAATTACAATTCATGTAAC+TGG - Chr8:54309041-54309060 MsG0880045106.01.T01:CDS 20.0%
!! AAATTACAATTCATGTAACT+GGG - Chr8:54309042-54309061 MsG0880045106.01.T01:CDS 20.0%
!! AACGTTAATACTGTATTAAT+TGG - Chr8:54310841-54310860 MsG0880045106.01.T01:intron 20.0%
!! AATTGATCAATTTAGTGAAA+AGG - Chr8:54308822-54308841 MsG0880045106.01.T01:CDS 20.0%
!! AGATTATTGTTAATAATCTG+AGG - Chr8:54309102-54309121 MsG0880045106.01.T01:intron 20.0%
!! ATTGATCAATTTAGTGAAAA+GGG - Chr8:54308823-54308842 MsG0880045106.01.T01:CDS 20.0%
!! GATTATATAATCATATTTCC+TGG - Chr8:54310312-54310331 MsG0880045106.01.T01:intron 20.0%
!! GATTATTGTTAATAATCTGA+GGG - Chr8:54309103-54309122 MsG0880045106.01.T01:intron 20.0%
!! TAAAAATCTCATAATTAACG+AGG + Chr8:54310020-54310039 None:intergenic 20.0%
!! TATTAACAATAATCTCTGTA+GGG + Chr8:54309097-54309116 None:intergenic 20.0%
!! TTATTAACAATAATCTCTGT+AGG + Chr8:54309098-54309117 None:intergenic 20.0%
!!! ACATGAATTGTAATTTTCTT+TGG + Chr8:54309038-54309057 None:intergenic 20.0%
!!! AGAACTTTTTTTTTTGTATC+AGG - Chr8:54310980-54310999 MsG0880045106.01.T01:intron 20.0%
!!! ATCTTTAAAGTTTAAATCGA+TGG - Chr8:54311405-54311424 MsG0880045106.01.T01:CDS 20.0%
!!! GTTCTTTGATTTATTTTCTT+TGG - Chr8:54311929-54311948 MsG0880045106.01.T01:intron 20.0%
! AAATTGGAAAAAAAGCTACA+AGG - Chr8:54310522-54310541 MsG0880045106.01.T01:intron 25.0%
! AAGAATTCAGAATTCAGAAA+TGG - Chr8:54309001-54309020 MsG0880045106.01.T01:CDS 25.0%
! AATACTGTATTAATTGGTTG+AGG - Chr8:54310847-54310866 MsG0880045106.01.T01:intron 25.0%
! AATCTTGAAATCCTTGAAAA+AGG - Chr8:54311581-54311600 MsG0880045106.01.T01:CDS 25.0%
! AATTGATTGAATTGTATGCA+AGG - Chr8:54311810-54311829 MsG0880045106.01.T01:intron 25.0%
! AATTTGCAACATCAATTATG+GGG + Chr8:54311033-54311052 None:intergenic 25.0%
! ACATGAAAAAGAGAGAAAAA+TGG + Chr8:54308663-54308682 None:intergenic 25.0%
! AGAATTCAGAATTCAGAAAT+GGG - Chr8:54309002-54309021 MsG0880045106.01.T01:CDS 25.0%
! ATACTGTATTAATTGGTTGA+GGG - Chr8:54310848-54310867 MsG0880045106.01.T01:intron 25.0%
! ATAGCATAAACAATTGTCAT+AGG + Chr8:54309604-54309623 None:intergenic 25.0%
! ATCTTGAAATCCTTGAAAAA+GGG - Chr8:54311582-54311601 MsG0880045106.01.T01:CDS 25.0%
! ATGTTGTAAAATAGCAGTTA+TGG + Chr8:54310230-54310249 None:intergenic 25.0%
! CAAATCTTCACCTTATAAAT+TGG - Chr8:54310793-54310812 MsG0880045106.01.T01:intron 25.0%
! GAAACAAATAACACTCAATA+AGG + Chr8:54309966-54309985 None:intergenic 25.0%
! GAATTTGCAACATCAATTAT+GGG + Chr8:54311034-54311053 None:intergenic 25.0%
! GATGTATAATTCATGAACAT+CGG - Chr8:54311965-54311984 MsG0880045106.01.T01:intron 25.0%
! GTTGAAAACAGCTTATAAAT+TGG + Chr8:54309353-54309372 None:intergenic 25.0%
! TACAAAATGTTGTTAAACAG+TGG + Chr8:54310139-54310158 None:intergenic 25.0%
! TAGAGAAAGAACAAATCAAT+AGG - Chr8:54310947-54310966 MsG0880045106.01.T01:intron 25.0%
! TTTCATTGATGTGTATTAGT+TGG - Chr8:54310914-54310933 MsG0880045106.01.T01:intron 25.0%
!! ATGAGATTTTTATAACTCTC+TGG - Chr8:54310028-54310047 MsG0880045106.01.T01:intron 25.0%
!! CGACTTGTTCTTAAATATTA+TGG - Chr8:54311284-54311303 MsG0880045106.01.T01:intron 25.0%
!! TGAGATTTTTATAACTCTCT+GGG - Chr8:54310029-54310048 MsG0880045106.01.T01:intron 25.0%
!!! ACTGCTATTTTACAACATTA+TGG - Chr8:54310232-54310251 MsG0880045106.01.T01:intron 25.0%
!!! ATAATCTTTTCCCTTTTTCA+AGG + Chr8:54311595-54311614 None:intergenic 25.0%
!!! ATCTTTTTACTTTTGAACCA+AGG + Chr8:54311140-54311159 None:intergenic 25.0%
!!! CTGCTATTTTACAACATTAT+GGG - Chr8:54310233-54310252 MsG0880045106.01.T01:intron 25.0%
!!! TATAGTCTTATAGACTTGTA+TGG - Chr8:54311092-54311111 MsG0880045106.01.T01:intron 25.0%
AAATGATCATTGAACTCTGT+TGG + Chr8:54311383-54311402 None:intergenic 30.0%
AATGATCATTGAACTCTGTT+GGG + Chr8:54311382-54311401 None:intergenic 30.0%
ACTCATAGTTTACTGATAAG+TGG + Chr8:54311355-54311374 None:intergenic 30.0%
AGAGTAATGCAAATGTTGTT+TGG - Chr8:54309258-54309277 MsG0880045106.01.T01:intron 30.0%
AGGGATTATGTTGAAAAGAA+AGG - Chr8:54309122-54309141 MsG0880045106.01.T01:intron 30.0%
ATAATCTCTGTAGGGTTTAT+TGG + Chr8:54309089-54309108 None:intergenic 30.0%
CAACCTTAAGCTAGAATAAT+AGG + Chr8:54311256-54311275 None:intergenic 30.0%
CATTATGGGTAACCAATAAT+CGG - Chr8:54310247-54310266 MsG0880045106.01.T01:intron 30.0%
CCTCACAAAACCAATTTATA+AGG + Chr8:54310806-54310825 None:intergenic 30.0%
CTCATAGTTTACTGATAAGT+GGG + Chr8:54311354-54311373 None:intergenic 30.0%
CTTAAGCTAGAATAATAGGA+AGG + Chr8:54311252-54311271 None:intergenic 30.0%
GGAATTTGCAACATCAATTA+TGG + Chr8:54311035-54311054 None:intergenic 30.0%
GTACTATCGTATAATCTGTT+TGG + Chr8:54309650-54309669 None:intergenic 30.0%
TAGCAGAAATTAAGATTGTG+TGG + Chr8:54308722-54308741 None:intergenic 30.0%
TCTCTAGTGTCAATTTAGAT+GGG + Chr8:54309502-54309521 None:intergenic 30.0%
TGTCAATTGCATAACAGTAA+TGG + Chr8:54309943-54309962 None:intergenic 30.0%
TTATTAACATGCAGAAGCAA+TGG + Chr8:54311787-54311806 None:intergenic 30.0%
TTGTAAAATAGCAGTTATGG+CGG + Chr8:54310227-54310246 None:intergenic 30.0%
! AGCTACAAGGTTTTCTTATA+TGG - Chr8:54310535-54310554 MsG0880045106.01.T01:intron 30.0%
! CATGTTGGATTGCATTTTAT+AGG - Chr8:54310714-54310733 MsG0880045106.01.T01:intron 30.0%
! GAGTAATGCAAATGTTGTTT+GGG - Chr8:54309259-54309278 MsG0880045106.01.T01:intron 30.0%
! TACTTGCTGCAAAAGAAAAT+TGG + Chr8:54310608-54310627 None:intergenic 30.0%
! TATCATTTTCACCACATTTC+TGG - Chr8:54309772-54309791 MsG0880045106.01.T01:intron 30.0%
!! ATTTGTTTCTACCAGAAATG+TGG + Chr8:54309786-54309805 None:intergenic 30.0%
!! CTATTATTCTAGCTTAAGGT+TGG - Chr8:54311254-54311273 MsG0880045106.01.T01:intron 30.0%
!! CTTCCTATTATTCTAGCTTA+AGG - Chr8:54311250-54311269 MsG0880045106.01.T01:intron 30.0%
!! TCATCGATTCTCGAAAATAA+GGG + Chr8:54311726-54311745 None:intergenic 30.0%
!! TTCATCGATTCTCGAAAATA+AGG + Chr8:54311727-54311746 None:intergenic 30.0%
!!! CCTTATAAATTGGTTTTGTG+AGG - Chr8:54310803-54310822 MsG0880045106.01.T01:intron 30.0%
!!! TGGTTTTGTGAGGTTAATTT+AGG - Chr8:54310813-54310832 MsG0880045106.01.T01:intron 30.0%
AAACCAAAACGAACTTGCAA+AGG - Chr8:54311438-54311457 MsG0880045106.01.T01:CDS 35.0%
AAAGAGAGAAAAATGGTACC+TGG + Chr8:54308656-54308675 None:intergenic 35.0%
AAGAGACAGAGAAACATCAT+TGG + Chr8:54308699-54308718 None:intergenic 35.0%
AAGAGAGAAAAATGGTACCT+GGG + Chr8:54308655-54308674 None:intergenic 35.0%
AATTCAGAAATGGGATCTGA+AGG - Chr8:54309011-54309030 MsG0880045106.01.T01:CDS 35.0%
ACGATATCAGATGCAAAACA+TGG + Chr8:54310572-54310591 None:intergenic 35.0%
ACTGGGTTTAAGAAGTTTCA+AGG - Chr8:54309059-54309078 MsG0880045106.01.T01:intron 35.0%
ATCCTAATTCATCAGAACAG+CGG + Chr8:54310451-54310470 None:intergenic 35.0%
ATGTGTATTACCACTCTCTT+CGG - Chr8:54311658-54311677 MsG0880045106.01.T01:intron 35.0%
ATTCAGAAATGGGATCTGAA+GGG - Chr8:54309012-54309031 MsG0880045106.01.T01:CDS 35.0%
ATTTATGCTTCAGCTTCACT+TGG - Chr8:54310364-54310383 MsG0880045106.01.T01:intron 35.0%
CACGTATCGCTAAACAATAA+TGG - Chr8:54310165-54310184 MsG0880045106.01.T01:CDS 35.0%
CTCTCTAGTGTCAATTTAGA+TGG + Chr8:54309503-54309522 None:intergenic 35.0%
GAACACACGATATTTGATCA+TGG - Chr8:54311178-54311197 MsG0880045106.01.T01:intron 35.0%
GAAGCTGAAGCATAAATTCA+AGG + Chr8:54310361-54310380 None:intergenic 35.0%
GATTGCACAGATATATATGC+TGG - Chr8:54311994-54312013 MsG0880045106.01.T01:five_prime_UTR 35.0%
GATTTCAAGATTGCATCAAC+AGG + Chr8:54311573-54311592 None:intergenic 35.0%
GTCTTATAGACTTGTATGGT+TGG - Chr8:54311096-54311115 MsG0880045106.01.T01:intron 35.0%
GTTATAGGGCTATAGTATAG+TGG + Chr8:54310203-54310222 None:intergenic 35.0%
TAGTTTACTGATAAGTGGGT+AGG + Chr8:54311350-54311369 None:intergenic 35.0%
TGCTAGACATTGTAACACAT+CGG - Chr8:54309885-54309904 MsG0880045106.01.T01:intron 35.0%
TTATGACGTGATGATATCAC+AGG - Chr8:54311611-54311630 MsG0880045106.01.T01:five_prime_UTR 35.0%
TTTATGCTTCAGCTTCACTT+GGG - Chr8:54310365-54310384 MsG0880045106.01.T01:intron 35.0%
! ACTCAACATCTACCGATTAT+TGG + Chr8:54310262-54310281 None:intergenic 35.0%
! ATTCCTTTGCAAGTTCGTTT+TGG + Chr8:54311444-54311463 None:intergenic 35.0%
! CGAAGTGTGACAATTTTGTT+TGG + Chr8:54308626-54308645 None:intergenic 35.0%
!! AATTCATGAACATCGGTTCT+TGG - Chr8:54311972-54311991 MsG0880045106.01.T01:five_prime_UTR 35.0%
!! AGTGGTTATAGAAGCACTAT+AGG + Chr8:54310121-54310140 None:intergenic 35.0%
AAGTTGCACTATTCTTGACG+TGG - Chr8:54309169-54309188 MsG0880045106.01.T01:intron 40.0%
AATTCCAATGCCATGGAAAG+TGG - Chr8:54311049-54311068 MsG0880045106.01.T01:intron 40.0%
ACTATAGGACTGTAGCATAG+TGG + Chr8:54310106-54310125 None:intergenic 40.0%
CAATCACTTACCACTTTCCA+TGG + Chr8:54311062-54311081 None:intergenic 40.0%
CAATGTCTAGCAGCAATTTC+AGG + Chr8:54309877-54309896 None:intergenic 40.0%
GAAAAGAAAGGTCTTCCAGT+TGG - Chr8:54309134-54309153 MsG0880045106.01.T01:intron 40.0%
GCAAGATCATAACTCACTTG+TGG + Chr8:54310479-54310498 None:intergenic 40.0%
GCTGTTCTGATGAATTAGGA+TGG - Chr8:54310450-54310469 MsG0880045106.01.T01:intron 40.0%
GGAATCTGTTGTGTCGAAAA+CGG - Chr8:54309229-54309248 MsG0880045106.01.T01:intron 40.0%
GTGGTAAGTGATTGCGTTTA+TGG - Chr8:54311068-54311087 MsG0880045106.01.T01:intron 40.0%
TCAAGGGTAATCTTGCAAAC+TGG + Chr8:54311311-54311330 None:intergenic 40.0%
TGTTGCAAATTCCAATGCCA+TGG - Chr8:54311042-54311061 MsG0880045106.01.T01:intron 40.0%
TTATGCTTCAGCTTCACTTG+GGG - Chr8:54310366-54310385 MsG0880045106.01.T01:intron 40.0%
TTCCGCTGTTCTGATGAATT+AGG - Chr8:54310446-54310465 MsG0880045106.01.T01:intron 40.0%
TTTCGACACAACAGATTCCA+TGG + Chr8:54309228-54309247 None:intergenic 40.0%
! ATTTACAGCCTCTCTTTTGG+AGG - Chr8:54311761-54311780 MsG0880045106.01.T01:intron 40.0%
! GAGATTTACAGCCTCTCTTT+TGG - Chr8:54311758-54311777 MsG0880045106.01.T01:intron 40.0%
AGGAATTTCTCGAACGAGAG+AGG - Chr8:54310648-54310667 MsG0880045106.01.T01:intron 45.0%
CTTACCACTTTCCATGGCAT+TGG + Chr8:54311056-54311075 None:intergenic 45.0%
CTTCCAAGAGTAACACCAAC+TGG + Chr8:54309152-54309171 None:intergenic 45.0%
GAAACCAGTGCTGTCAATTG+CGG - Chr8:54310051-54310070 MsG0880045106.01.T01:intron 45.0%
GAATCAAACCTGAGACCTCA+AGG - Chr8:54309522-54309541 MsG0880045106.01.T01:intron 45.0%
GAGAAATTCCTCCATCCTCA+AGG + Chr8:54310639-54310658 None:intergenic 45.0%
GCAAGTACCAATAGTCCTTG+AGG - Chr8:54310621-54310640 MsG0880045106.01.T01:intron 45.0%
GTACCAATAGTCCTTGAGGA+TGG - Chr8:54310625-54310644 MsG0880045106.01.T01:intron 45.0%
GTTCGCTACAATCACAACCT+TGG - Chr8:54311120-54311139 MsG0880045106.01.T01:intron 45.0%
TACACAACCAGATGACAGAG+TGG + Chr8:54311846-54311865 None:intergenic 45.0%
TATGCTTCAGCTTCACTTGG+GGG - Chr8:54310367-54310386 MsG0880045106.01.T01:intron 45.0%
TCCATGGTCTGATAAAGCTG+AGG + Chr8:54309212-54309231 None:intergenic 45.0%
! TCCTCAGCTTTATCAGACCA+TGG - Chr8:54309208-54309227 MsG0880045106.01.T01:intron 45.0%
!! CTTCCAGTTGGTGTTACTCT+TGG - Chr8:54309146-54309165 MsG0880045106.01.T01:intron 45.0%
AAGGTTTGCCATTGAGCGGT+TGG - Chr8:54310406-54310425 MsG0880045106.01.T01:intron 50.0%
ACCAGATGACAGAGTGGACA+TGG + Chr8:54311840-54311859 None:intergenic 50.0%
AGCAATGGCCTCCAAAAGAG+AGG + Chr8:54311772-54311791 None:intergenic 50.0%
AGCAGTTATGGCGGCGTTAT+AGG + Chr8:54310218-54310237 None:intergenic 50.0%
ATAAGTGGGTAGGTCGCTTG+AGG + Chr8:54311340-54311359 None:intergenic 50.0%
ATTCTTGACGTGGCTGGTGA+TGG - Chr8:54309179-54309198 MsG0880045106.01.T01:intron 50.0%
CAATCCGCAATTGACAGCAC+TGG + Chr8:54310058-54310077 None:intergenic 50.0%
CCAATAGTCCTTGAGGATGG+AGG - Chr8:54310628-54310647 MsG0880045106.01.T01:intron 50.0%
CCTCCATCCTCAAGGACTAT+TGG + Chr8:54310631-54310650 None:intergenic 50.0%
CTGCAAGGTTTGCCATTGAG+CGG - Chr8:54310402-54310421 MsG0880045106.01.T01:intron 50.0%
GATCCCAAGCCAATACCACT+AGG - Chr8:54309560-54309579 MsG0880045106.01.T01:intron 50.0%
GCAGTTATGGCGGCGTTATA+GGG + Chr8:54310217-54310236 None:intergenic 50.0%
GTCACACTTCGTGAATTCCC+AGG - Chr8:54308635-54308654 MsG0880045106.01.T01:three_prime_UTR 50.0%
GTGATGATATCACAGGACGC+AGG - Chr8:54311618-54311637 MsG0880045106.01.T01:five_prime_UTR 50.0%
TCAAACCTGAGACCTCAAGG+AGG - Chr8:54309525-54309544 MsG0880045106.01.T01:intron 50.0%
TCGCGTGATCTGTAGCATGT+TGG - Chr8:54310699-54310718 MsG0880045106.01.T01:intron 50.0%
TGCACTATTCTTGACGTGGC+TGG - Chr8:54309173-54309192 MsG0880045106.01.T01:intron 50.0%
TGTCATAGGCCAACCCACTT+GGG + Chr8:54309590-54309609 None:intergenic 50.0%
TTGTCATAGGCCAACCCACT+TGG + Chr8:54309591-54309610 None:intergenic 50.0%
! CTTCGGTTCGCAGAACAGAA+GGG - Chr8:54311675-54311694 MsG0880045106.01.T01:intron 50.0%
! TCTTCGGTTCGCAGAACAGA+AGG - Chr8:54311674-54311693 MsG0880045106.01.T01:intron 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG + Chr8:54309560-54309579 None:intergenic 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG + Chr8:54309559-54309578 None:intergenic 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + Chr8:54309566-54309585 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + Chr8:54309567-54309586 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + Chr8:54309572-54309591 None:intergenic 50.0%
ACCACTAGGCCAACCCAAGT+GGG - Chr8:54309574-54309593 MsG0880045106.01.T01:intron 55.0%
ATAGGCCAACCCACTTGGGT+TGG + Chr8:54309586-54309605 None:intergenic 55.0%
ATTCGCTGCCAACCGCTCAA+TGG + Chr8:54310417-54310436 None:intergenic 55.0%
CTTCACTTGGGGGTGAACAG+TGG - Chr8:54310377-54310396 MsG0880045106.01.T01:intron 55.0%
GCCATGTCCACTCTGTCATC+TGG - Chr8:54311836-54311855 MsG0880045106.01.T01:intron 55.0%
GTCGGAGACGTAGGCACAAT+TGG + Chr8:54311211-54311230 None:intergenic 55.0%
GTTCTGCGAACCGAAGAGAG+TGG + Chr8:54311671-54311690 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG - Chr8:54309573-54309592 MsG0880045106.01.T01:intron 55.0%
TACTGCAGCAGCTCTGCAGT+CGG + Chr8:54311229-54311248 None:intergenic 55.0%
TCGCTTGAGGCACGGTTCAA+GGG + Chr8:54311327-54311346 None:intergenic 55.0%
AGCTCTGCAGTCGGAGACGT+AGG + Chr8:54311220-54311239 None:intergenic 60.0%
CTAGGCCAACCCAAGTGGGT+TGG - Chr8:54309578-54309597 MsG0880045106.01.T01:intron 60.0%
GGGTGAACAGTGGAGCTGCA+AGG - Chr8:54310387-54310406 MsG0880045106.01.T01:intron 60.0%
GTCGCTTGAGGCACGGTTCA+AGG + Chr8:54311328-54311347 None:intergenic 60.0%
GTGCTCCTCCTTGAGGTCTC+AGG + Chr8:54309533-54309552 None:intergenic 60.0%
TGGGTAGGTCGCTTGAGGCA+CGG + Chr8:54311335-54311354 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTTG+AGG + Chr8:54309540-54309559 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + Chr8:54309578-54309597 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 54308599 54312024 54308599 ID=MsG0880045106.01;Name=MsG0880045106.01
Chr8 mRNA 54308599 54312024 54308599 ID=MsG0880045106.01.T01;Parent=MsG0880045106.01;Name=MsG0880045106.01.T01;_AED=0.48;_eAED=0.48;_QI=122|0.66|1|1|0.66|0.5|4|221|202
Chr8 exon 54308599 54309062 54308599 ID=MsG0880045106.01.T01:exon:23441;Parent=MsG0880045106.01.T01
Chr8 exon 54310142 54310246 54310142 ID=MsG0880045106.01.T01:exon:23440;Parent=MsG0880045106.01.T01
Chr8 exon 54311343 54311667 54311343 ID=MsG0880045106.01.T01:exon:23439;Parent=MsG0880045106.01.T01
Chr8 exon 54311967 54312024 54311967 ID=MsG0880045106.01.T01:exon:23438;Parent=MsG0880045106.01.T01
Chr8 five_prime_UTR 54311967 54312024 54311967 ID=MsG0880045106.01.T01:five_prime_utr;Parent=MsG0880045106.01.T01
Chr8 five_prime_UTR 54311604 54311667 54311604 ID=MsG0880045106.01.T01:five_prime_utr;Parent=MsG0880045106.01.T01
Chr8 CDS 54311343 54311603 54311343 ID=MsG0880045106.01.T01:cds;Parent=MsG0880045106.01.T01
Chr8 CDS 54310142 54310246 54310142 ID=MsG0880045106.01.T01:cds;Parent=MsG0880045106.01.T01
Chr8 CDS 54308820 54309062 54308820 ID=MsG0880045106.01.T01:cds;Parent=MsG0880045106.01.T01
Chr8 three_prime_UTR 54308599 54308819 54308599 ID=MsG0880045106.01.T01:three_prime_utr;Parent=MsG0880045106.01.T01
Gene Sequence

>MsG0880045106.01.T01

ATGGGATCTGAAGGGCCAAAGAAAATTACAATTCATGTAACTGGGTTTAAGAAGTTTCAAGGAGTGCCAATAAACCCTACAGAGATTATTGTTAATAATCTGAGGGATTATGTTGAAAAGAAAGGTCTTCCAGTTGGTGTTACTCTTGGAAGTTGCACTATTCTTGACGTGGCTGGTGATGGTGCACTTCCTCAGCTTTATCAGACCATGGAATCTGTTGTGTCGAAAACGGATACAGAGAGTAATGCAAATGTTGTTTGGCTTCACTTGGGGGTGAACAGTGGAGCTGCAAGGTTTGCCATTGAGCGGTTGGCAGCGAATGAAGCTACTTTCCGCTGTTCTGATGAATTAGGATGGCAACCACAAACTTCTCTGCCTGTTGATGCAATCTTGAAATCCTTGAAAAAGGGAAAAGATTATGACGTGATGATATCACAGGACGCAGGACGATTTGTTTGCAATTATGTGTATTACCACTCTCTTCGGTTCGCAGAACAGAAGGGTAACAAGTCTCTATTTGTTCATGTTCCCTTATTTTCGAGAATCGATGAAGAAACTCAGATGAGATTTACAGCCTCTCTTTTGGAGGCCATTGCTTCTGCATGTTAA

Protein sequence

>MsG0880045106.01.T01

MGSEGPKKITIHVTGFKKFQGVPINPTEIIVNNLRDYVEKKGLPVGVTLGSCTILDVAGDGALPQLYQTMESVVSKTDTESNANVVWLHLGVNSGAARFAIERLAANEATFRCSDELGWQPQTSLPVDAILKSLKKGKDYDVMISQDAGRFVCNYVYYHSLRFAEQKGNKSLFVHVPLFSRIDEETQMRFTASLLEAIASAC*