AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020496.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020496.01.T01 MTR_4g052420 79.618 157 13 1 1 157 1 138 8.88e-81 235
MsG0480020496.01.T01 MTR_4g052420 79.114 158 13 2 1 157 1 139 5.19e-79 231
MsG0480020496.01.T02 MTR_4g052420 79.618 157 13 1 1 157 1 138 8.88e-81 235
MsG0480020496.01.T02 MTR_4g052420 79.114 158 13 2 1 157 1 139 5.19e-79 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020496.01.T01 AT1G08380 59.627 161 38 4 1 155 1 140 1.53e-52 164
MsG0480020496.01.T02 AT1G08380 59.627 161 38 4 1 155 1 140 1.53e-52 164

Find 16 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTCATCTCTCTCACTTT+TGG 0.231594 4:-42442084 MsG0480020496.01.T01:CDS
ATGGCTGATCTGTTGGCACC+TGG 0.325103 4:-42442109 MsG0480020496.01.T01:CDS
GTCCTTCCTTTGAAACCATT+TGG 0.350673 4:+42442061 None:intergenic
CAAGGCTGAAAGTAACATAA+AGG 0.369414 4:+42441913 None:intergenic
ATTTACAACATTCATTATGA+AGG 0.429641 4:+42441803 None:intergenic
TGGCTGATCTGTTGGCACCT+GGG 0.454791 4:-42442108 MsG0480020496.01.T01:CDS
GGCCAAATGGTTTCAAAGGA+AGG 0.476342 4:-42442063 MsG0480020496.01.T01:CDS
GGCTGATCTGTTGGCACCTG+GGG 0.482909 4:-42442107 MsG0480020496.01.T01:CDS
TTTACTCATGGTAGATTACA+AGG 0.487388 4:+42441895 None:intergenic
AAGGCTGAAAGTAACATAAA+GGG 0.495180 4:+42441914 None:intergenic
GCAGGTTATGGCTGATCTGT+TGG 0.521700 4:-42442116 MsG0480020496.01.T01:intron
TGAGAGAGATGAACAGCCCC+AGG 0.530883 4:+42442091 None:intergenic
TTCCTAGTACGATGGAAAAG+TGG 0.535328 4:+42441842 None:intergenic
AAGTGGCAAAGTGTTCTACA+AGG 0.630381 4:+42441859 None:intergenic
TATTACTTTGAATTAAACTG+AGG 0.634034 4:-42441989 MsG0480020496.01.T01:intron
TGGTTTCAAAGGAAGGACTG+AGG 0.695421 4:-42442056 MsG0480020496.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATTAAAATTAAGTA+AGG - Chr4:42443384-42443403 MsG0480020496.01.T01:intron 10.0%
!! TGATCAAATATATAAATTAT+TGG - Chr4:42442804-42442823 MsG0480020496.01.T01:intron 10.0%
!! TTAAAAAATTTAAGTGTTTA+AGG - Chr4:42443296-42443315 MsG0480020496.01.T01:intron 10.0%
!!! ATAAGTATTTTTTTTTTGTA+GGG - Chr4:42443357-42443376 MsG0480020496.01.T01:intron 10.0%
!!! TATAAGTATTTTTTTTTTGT+AGG - Chr4:42443356-42443375 MsG0480020496.01.T01:intron 10.0%
!!! TTCATTTTATTTATTTAAGT+CGG - Chr4:42442716-42442735 MsG0480020496.01.T01:intron 10.0%
!!! TTTGCATTTAAATATATTTT+TGG - Chr4:42444550-42444569 MsG0480020496.01.T01:intron 10.0%
!!! TTTTAATTCATAATAACTTA+TGG - Chr4:42444767-42444786 MsG0480020496.01.T01:intron 10.0%
!!! TTTTATTTTTATTTTTATGG+TGG + Chr4:42443844-42443863 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTACTCA+TGG + Chr4:42444842-42444861 None:intergenic 10.0%
!! AAATTAAATCCATAAAGTTT+AGG - Chr4:42444003-42444022 MsG0480020496.01.T01:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG + Chr4:42443050-42443069 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + Chr4:42442978-42442997 None:intergenic 15.0%
!! AGTAAAATAAAGAAAAGAAA+AGG - Chr4:42444401-42444420 MsG0480020496.01.T01:intron 15.0%
!! TAAGATATAAGAACAAAATA+TGG + Chr4:42443167-42443186 None:intergenic 15.0%
!! TAGAAAACAACAATAATAAT+TGG - Chr4:42441851-42441870 MsG0480020496.01.T02:three_prime_UTR 15.0%
!!! AAAATCTGGTTTTTTTATTA+TGG - Chr4:42444143-42444162 MsG0480020496.01.T01:CDS 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG - Chr4:42443325-42443344 MsG0480020496.01.T01:intron 15.0%
!!! AAATCTGGTTTTTTTATTAT+GGG - Chr4:42444144-42444163 MsG0480020496.01.T01:CDS 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG - Chr4:42443324-42443343 MsG0480020496.01.T01:intron 15.0%
!!! TATGATTATTTTCATTAACT+TGG + Chr4:42443539-42443558 None:intergenic 15.0%
!!! TCCATATGAATATTTATTTT+CGG - Chr4:42442233-42442252 MsG0480020496.01.T01:intron 15.0%
!!! TTTAATTGTAATTTGTTTGT+AGG - Chr4:42442077-42442096 MsG0480020496.01.T01:CDS 15.0%
!!! TTTTTTTTTCTAACAATCTA+TGG + Chr4:42443985-42444004 None:intergenic 15.0%
!! AAAGAACTTGTGAATTAAAT+GGG + Chr4:42443488-42443507 None:intergenic 20.0%
!! AAAGTAATGAAAATATGAAG+TGG - Chr4:42443608-42443627 MsG0480020496.01.T01:intron 20.0%
!! AAATAAAATAAGATTGGGTT+TGG + Chr4:42441811-42441830 None:intergenic 20.0%
!! AAATAAATTGTATCCATTGT+TGG + Chr4:42443935-42443954 None:intergenic 20.0%
!! ATCATAGATTACAACTAAAA+TGG - Chr4:42441942-42441961 MsG0480020496.01.T01:three_prime_UTR 20.0%
!! ATTTACAACATTCATTATGA+AGG + Chr4:42444922-42444941 None:intergenic 20.0%
!! CTTCCAAATAAAATAAGATT+GGG + Chr4:42441816-42441835 None:intergenic 20.0%
!! GAACTTTAACAAAAAAAATC+TGG - Chr4:42444129-42444148 MsG0480020496.01.T01:CDS 20.0%
!! TAAAGAACTTGTGAATTAAA+TGG + Chr4:42443489-42443508 None:intergenic 20.0%
!! TATTACTTTGAATTAAACTG+AGG - Chr4:42444733-42444752 MsG0480020496.01.T01:CDS 20.0%
!! TGCTAATGAGAAATTATAAA+TGG - Chr4:42444103-42444122 MsG0480020496.01.T01:CDS 20.0%
!!! AAACCCAATCTTATTTTATT+TGG - Chr4:42441810-42441829 MsG0480020496.01.T02:three_prime_UTR 20.0%
!!! AAATGCGTTAATTATGTTTT+TGG - Chr4:42442920-42442939 MsG0480020496.01.T01:intron 20.0%
!!! AAATTGGAAGGTTTTTTTTT+TGG + Chr4:42443458-42443477 None:intergenic 20.0%
!!! AATTGGAAGGTTTTTTTTTT+GGG + Chr4:42443457-42443476 None:intergenic 20.0%
!!! ACAATGGATACAATTTATTT+TGG - Chr4:42443935-42443954 MsG0480020496.01.T01:intron 20.0%
!!! ATTTTTATTTTTATGGTGGT+CGG + Chr4:42443840-42443859 None:intergenic 20.0%
!!! CAATTTTTGCGATATTTTTT+CGG + Chr4:42443134-42443153 None:intergenic 20.0%
!!! CATTATTTTGTGAATTGTTA+TGG - Chr4:42442450-42442469 MsG0480020496.01.T01:intron 20.0%
!!! CTATAAGATTGGTTTTTATA+TGG - Chr4:42442187-42442206 MsG0480020496.01.T01:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG - Chr4:42443080-42443099 MsG0480020496.01.T01:intron 20.0%
!!! TGGTAATTTTACTATAAGAT+TGG - Chr4:42442176-42442195 MsG0480020496.01.T01:intron 20.0%
!!! TTAAATGGGGTATTAAAAAT+TGG + Chr4:42443474-42443493 None:intergenic 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG + Chr4:42443441-42443460 None:intergenic 20.0%
! AAGAACTTGTGAATTAAATG+GGG + Chr4:42443487-42443506 None:intergenic 25.0%
! AAGTAAGGACTAAACTTATA+AGG + Chr4:42442963-42442982 None:intergenic 25.0%
! ATATTTGATCATTCCTTACA+TGG + Chr4:42442795-42442814 None:intergenic 25.0%
! ATTTCAATGTGATTGGATTT+GGG - Chr4:42442526-42442545 MsG0480020496.01.T01:intron 25.0%
! CCTTCCAAATAAAATAAGAT+TGG + Chr4:42441817-42441836 None:intergenic 25.0%
! GCCGAAAATAAATATTCATA+TGG + Chr4:42442237-42442256 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - Chr4:42443104-42443123 MsG0480020496.01.T01:intron 25.0%
! TAATGAAAATATGAAGTGGA+AGG - Chr4:42443612-42443631 MsG0480020496.01.T01:intron 25.0%
! TATAAATTATTGGCATCTAG+AGG - Chr4:42442814-42442833 MsG0480020496.01.T01:intron 25.0%
! TCATATTTCACGTGATTAAA+CGG + Chr4:42442339-42442358 None:intergenic 25.0%
! TCTAACAGACAATTAAAACA+AGG - Chr4:42442870-42442889 MsG0480020496.01.T01:intron 25.0%
! TTATTAGCACCTAAACTTTA+TGG + Chr4:42444015-42444034 None:intergenic 25.0%
!! GTAAAATTTTACACCAACAA+TGG - Chr4:42443919-42443938 MsG0480020496.01.T01:intron 25.0%
!! TTCAAAAGCAGTTTTTGTTA+AGG + Chr4:42444288-42444307 None:intergenic 25.0%
!!! CCAATCTTATTTTATTTGGA+AGG - Chr4:42441814-42441833 MsG0480020496.01.T02:three_prime_UTR 25.0%
!!! TTTTTATTTTTATGGTGGTC+GGG + Chr4:42443839-42443858 None:intergenic 25.0%
AAGGCTGAAAGTAACATAAA+GGG + Chr4:42444811-42444830 None:intergenic 30.0%
ATGAAAATGACTAACCAGAA+GGG + Chr4:42442675-42442694 None:intergenic 30.0%
GATTTCAATGTGATTGGATT+TGG - Chr4:42442525-42442544 MsG0480020496.01.T01:intron 30.0%
TGAATTGTTATGGCATGTTA+TGG - Chr4:42442460-42442479 MsG0480020496.01.T01:intron 30.0%
TTAGAAGATCGCCATTTATA+GGG - Chr4:42443414-42443433 MsG0480020496.01.T01:intron 30.0%
TTTACTCATGGTAGATTACA+AGG + Chr4:42444830-42444849 None:intergenic 30.0%
! ATGGGGTATTAAAAATTGGA+AGG + Chr4:42443470-42443489 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG + Chr4:42443262-42443281 None:intergenic 30.0%
! TATAAGGTCGCAATTTTGTA+GGG + Chr4:42442947-42442966 None:intergenic 30.0%
! TTATAAGGTCGCAATTTTGT+AGG + Chr4:42442948-42442967 None:intergenic 30.0%
!!! ATGTTTTTGGTCCCTATAAA+TGG + Chr4:42443428-42443447 None:intergenic 30.0%
!!! TTCGGCTAGTTTTATAGTAT+AGG - Chr4:42442251-42442270 MsG0480020496.01.T01:intron 30.0%
!!! TTTTATTTTTATGGTGGTCG+GGG + Chr4:42443838-42443857 None:intergenic 30.0%
!!! TTTTTGCGATATTTTTTCGG+AGG + Chr4:42443131-42443150 None:intergenic 30.0%
AATCGGAACAAAACCATGTA+AGG - Chr4:42442779-42442798 MsG0480020496.01.T01:intron 35.0%
ATAGATGGTAAAAGTCTGAC+TGG - Chr4:42442585-42442604 MsG0480020496.01.T01:intron 35.0%
ATCAATCCTACCGTCTAAAT+CGG - Chr4:42442762-42442781 MsG0480020496.01.T01:intron 35.0%
ATGATGAATTGAGCAGGTTA+TGG - Chr4:42444594-42444613 MsG0480020496.01.T01:CDS 35.0%
ATTTCTATCAAACGGTTCCA+TGG + Chr4:42444486-42444505 None:intergenic 35.0%
CAAGGCTGAAAGTAACATAA+AGG + Chr4:42444812-42444831 None:intergenic 35.0%
CCATCGTACTAGGAAAAATT+GGG - Chr4:42444888-42444907 MsG0480020496.01.T01:five_prime_UTR 35.0%
CGTCGGTAATTTCTATCAAA+CGG + Chr4:42444494-42444513 None:intergenic 35.0%
CGTTTGATAGAAATTACCGA+CGG - Chr4:42444492-42444511 MsG0480020496.01.T01:intron 35.0%
CTTAGAAGATCGCCATTTAT+AGG - Chr4:42443413-42443432 MsG0480020496.01.T01:intron 35.0%
GATGAAAATGACTAACCAGA+AGG + Chr4:42442676-42442695 None:intergenic 35.0%
GTGAGCTTGTCTTAGTAAAA+AGG - Chr4:42443658-42443677 MsG0480020496.01.T01:intron 35.0%
GTTAATGATCATGATACCTG+AGG + Chr4:42442019-42442038 None:intergenic 35.0%
TCAAACATGATGAATTGAGC+AGG - Chr4:42444588-42444607 MsG0480020496.01.T01:CDS 35.0%
TCAGTTTATATCACATCCGT+CGG + Chr4:42444511-42444530 None:intergenic 35.0%
TCCATCGTACTAGGAAAAAT+TGG - Chr4:42444887-42444906 MsG0480020496.01.T01:five_prime_UTR 35.0%
TTATGGCATGTTATGGCATA+TGG - Chr4:42442467-42442486 MsG0480020496.01.T01:intron 35.0%
! AAGGAATCAGTTAGAGGTAT+GGG - Chr4:42443631-42443650 MsG0480020496.01.T01:intron 35.0%
! AGACTTTTACCATCTATAGC+TGG + Chr4:42442582-42442601 None:intergenic 35.0%
! TTTTGGCCAAATGGTTTCAA+AGG - Chr4:42444655-42444674 MsG0480020496.01.T01:intron 35.0%
!! GGACTTTTCTTTGATAGCAT+TGG - Chr4:42442606-42442625 MsG0480020496.01.T01:intron 35.0%
!!! GAGTGCAGACATTTTTTGTA+GGG + Chr4:42443007-42443026 None:intergenic 35.0%
!!! TGAGTGCAGACATTTTTTGT+AGG + Chr4:42443008-42443027 None:intergenic 35.0%
!!! TGGTTTTGTTCCGATTTAGA+CGG + Chr4:42442775-42442794 None:intergenic 35.0%
AAGTGGAAGGAATCAGTTAG+AGG - Chr4:42443625-42443644 MsG0480020496.01.T01:intron 40.0%
AATGTCAAAGTTGTCCTCGT+GGG - Chr4:42443759-42443778 MsG0480020496.01.T01:intron 40.0%
AGGAGGGATTTCAATGTGAT+TGG - Chr4:42442519-42442538 MsG0480020496.01.T01:intron 40.0%
ATAGTAGCTTCCAAAGGGAT+TGG - Chr4:42442493-42442512 MsG0480020496.01.T01:intron 40.0%
ATATGTGTGCAAAGTAGTGG+TGG + Chr4:42441888-42441907 None:intergenic 40.0%
CAGATATGTGTGCAAAGTAG+TGG + Chr4:42441891-42441910 None:intergenic 40.0%
GAAGGAATCAGTTAGAGGTA+TGG - Chr4:42443630-42443649 MsG0480020496.01.T01:intron 40.0%
GGTGTATAGTAGCTTCCAAA+GGG - Chr4:42442488-42442507 MsG0480020496.01.T01:intron 40.0%
TAATGTCAAAGTTGTCCTCG+TGG - Chr4:42443758-42443777 MsG0480020496.01.T01:intron 40.0%
TCAAGCATACCAGCTATAGA+TGG - Chr4:42442570-42442589 MsG0480020496.01.T01:intron 40.0%
TCTATAGCTGGTATGCTTGA+TGG + Chr4:42442570-42442589 None:intergenic 40.0%
TGAAACCTCAAGTGATTGCT+AGG - Chr4:42442105-42442124 MsG0480020496.01.T01:CDS 40.0%
TGGTGTATAGTAGCTTCCAA+AGG - Chr4:42442487-42442506 MsG0480020496.01.T01:intron 40.0%
TTCCTAGTACGATGGAAAAG+TGG + Chr4:42444883-42444902 None:intergenic 40.0%
TTTGTTCCGATTTAGACGGT+AGG + Chr4:42442771-42442790 None:intergenic 40.0%
! AAGTGGCAAAGTGTTCTACA+AGG + Chr4:42444866-42444885 None:intergenic 40.0%
! CAAAGTAGTGGTGGTTTTTG+TGG + Chr4:42441879-42441898 None:intergenic 40.0%
! CCCAATTTTTCCTAGTACGA+TGG + Chr4:42444891-42444910 None:intergenic 40.0%
! CTGTTCATCTCTCTCACTTT+TGG - Chr4:42444638-42444657 MsG0480020496.01.T01:intron 40.0%
!! ATTTGGGTTGATAGGTTGGT+TGG - Chr4:42442542-42442561 MsG0480020496.01.T01:intron 40.0%
!! GAATCCTTTGAAGCAAGCTA+TGG - Chr4:42442127-42442146 MsG0480020496.01.T01:intron 40.0%
!! GTCCTTCCTTTGAAACCATT+TGG + Chr4:42444664-42444683 None:intergenic 40.0%
!! GTGATTGGATTTGGGTTGAT+AGG - Chr4:42442534-42442553 MsG0480020496.01.T01:intron 40.0%
!! TTGGATTTGGGTTGATAGGT+TGG - Chr4:42442538-42442557 MsG0480020496.01.T01:intron 40.0%
AAGTAAGAGCAGGAGGAGTA+GGG + Chr4:42442650-42442669 None:intergenic 45.0%
AGTAACCCGAGTTCAAGTCT+CGG + Chr4:42444432-42444451 None:intergenic 45.0%
CAAGCTATGGCACTTGGAAA+TGG - Chr4:42442140-42442159 MsG0480020496.01.T01:intron 45.0%
CTATGGCACTTGGAAATGGT+GGG - Chr4:42442144-42442163 MsG0480020496.01.T01:intron 45.0%
GGATTCCTAGCAATCACTTG+AGG + Chr4:42442113-42442132 None:intergenic 45.0%
GGCCAAATGGTTTCAAAGGA+AGG - Chr4:42444659-42444678 MsG0480020496.01.T01:intron 45.0%
TGGTTTCAAAGGAAGGACTG+AGG - Chr4:42444666-42444685 MsG0480020496.01.T01:intron 45.0%
TTGAAGCAAGCTATGGCACT+TGG - Chr4:42442134-42442153 MsG0480020496.01.T01:intron 45.0%
! GAAATGGTGGGAGAGTTACA+TGG - Chr4:42442156-42442175 MsG0480020496.01.T01:intron 45.0%
!! AGTGCCATAGCTTGCTTCAA+AGG + Chr4:42442134-42442153 None:intergenic 45.0%
!! CTCTCTCACTTTTGGCCAAA+TGG - Chr4:42444646-42444665 MsG0480020496.01.T01:intron 45.0%
!!! TGCCACTTTTCCATCGTACT+AGG - Chr4:42444878-42444897 MsG0480020496.01.T01:five_prime_UTR 45.0%
!!! ATAAACATTTTTTTTTTTAA+TGG - Chr4:42444057-42444076 MsG0480020496.01.T01:CDS 5.0%
!!! TAAACATTTTTTTTTTTAAT+GGG - Chr4:42444058-42444077 MsG0480020496.01.T01:CDS 5.0%
!!! TAGTTTTATTTTTATTTTTA+TGG + Chr4:42443847-42443866 None:intergenic 5.0%
AAGGGTGAAGTAAGAGCAGG+AGG + Chr4:42442657-42442676 None:intergenic 50.0%
ACAACCTTTCCAACCGTCCT+AGG - Chr4:42441970-42441989 MsG0480020496.01.T01:intron 50.0%
ATGTCCTAACCGCTAGACCA+TGG - Chr4:42444466-42444485 MsG0480020496.01.T01:intron 50.0%
CAAACGGTTCCATGGTCTAG+CGG + Chr4:42444478-42444497 None:intergenic 50.0%
CAGAAGGGTGAAGTAAGAGC+AGG + Chr4:42442660-42442679 None:intergenic 50.0%
CATTCCTAGGACGGTTGGAA+AGG + Chr4:42441977-42441996 None:intergenic 50.0%
CTGCTCTTACTTCACCCTTC+TGG - Chr4:42442658-42442677 MsG0480020496.01.T01:intron 50.0%
CTTTCCAACCGTCCTAGGAA+TGG - Chr4:42441975-42441994 MsG0480020496.01.T01:intron 50.0%
GAAGTAAGAGCAGGAGGAGT+AGG + Chr4:42442651-42442670 None:intergenic 50.0%
GAGACTTGAACTCGGGTTAC+TGG - Chr4:42444431-42444450 MsG0480020496.01.T01:intron 50.0%
GCAGGTTATGGCTGATCTGT+TGG - Chr4:42444606-42444625 MsG0480020496.01.T01:CDS 50.0%
GCTATGGCACTTGGAAATGG+TGG - Chr4:42442143-42442162 MsG0480020496.01.T01:intron 50.0%
GTGGGCTTATCTCAGTGGTA+GGG - Chr4:42443777-42443796 MsG0480020496.01.T01:intron 50.0%
GTTCCACCGAGACTTGAACT+CGG - Chr4:42444423-42444442 MsG0480020496.01.T01:intron 50.0%
TGGTCTAGCGGTTAGGACAT+TGG + Chr4:42444466-42444485 None:intergenic 50.0%
TTCCACCGAGACTTGAACTC+GGG - Chr4:42444424-42444443 MsG0480020496.01.T01:intron 50.0%
! GGGTTTGGATTGCGTTTTCG+TGG + Chr4:42441796-42441815 None:intergenic 50.0%
AACCCGAGTTCAAGTCTCGG+TGG + Chr4:42444429-42444448 None:intergenic 55.0%
ACCACTGAGATAAGCCCACG+AGG + Chr4:42443776-42443795 None:intergenic 55.0%
ATGGCTGATCTGTTGGCACC+TGG - Chr4:42444613-42444632 MsG0480020496.01.T01:CDS 55.0%
CGTGGGCTTATCTCAGTGGT+AGG - Chr4:42443776-42443795 MsG0480020496.01.T01:intron 55.0%
GGTTCCATGGTCTAGCGGTT+AGG + Chr4:42444473-42444492 None:intergenic 55.0%
GTGATGCACCAGCCATTCCT+AGG + Chr4:42441990-42442009 None:intergenic 55.0%
TCCTCGTGGGCTTATCTCAG+TGG - Chr4:42443772-42443791 MsG0480020496.01.T01:intron 55.0%
TGAGAGAGATGAACAGCCCC+AGG + Chr4:42444634-42444653 None:intergenic 55.0%
TGCACCAGCCATTCCTAGGA+CGG + Chr4:42441986-42442005 None:intergenic 55.0%
TGGCTGATCTGTTGGCACCT+GGG - Chr4:42444614-42444633 MsG0480020496.01.T01:CDS 55.0%
!! CCAAAGGGATTGGCTGAGGA+GGG - Chr4:42442503-42442522 MsG0480020496.01.T01:intron 55.0%
!! GCTTCCAAAGGGATTGGCTG+AGG - Chr4:42442499-42442518 MsG0480020496.01.T01:intron 55.0%
!! TCCAAAGGGATTGGCTGAGG+AGG - Chr4:42442502-42442521 MsG0480020496.01.T01:intron 55.0%
CCAACCGTCCTAGGAATGGC+TGG - Chr4:42441979-42441998 MsG0480020496.01.T01:intron 60.0%
CCAGCCATTCCTAGGACGGT+TGG + Chr4:42441982-42442001 None:intergenic 60.0%
CCCTCCTCAGCCAATCCCTT+TGG + Chr4:42442506-42442525 None:intergenic 60.0%
GGCTGATCTGTTGGCACCTG+GGG - Chr4:42444615-42444634 MsG0480020496.01.T01:CDS 60.0%
GGTGCATCACGTCTCACCTC+AGG - Chr4:42442000-42442019 MsG0480020496.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 42441762 42444982 42441762 ID=MsG0480020496.01;Name=MsG0480020496.01
Chr4 mRNA 42441905 42444982 42441905 ID=MsG0480020496.01.T01;Parent=MsG0480020496.01;Name=MsG0480020496.01.T01;_AED=0.48;_eAED=0.50;_QI=199|0.75|0.8|1|0.75|0.6|5|68|157
Chr4 exon 42441905 42441964 42441905 ID=MsG0480020496.01.T01:exon:4535;Parent=MsG0480020496.01.T01
Chr4 exon 42442031 42442134 42442031 ID=MsG0480020496.01.T01:exon:4534;Parent=MsG0480020496.01.T01
Chr4 five_prime_UTR 42444784 42444982 42444784 ID=MsG0480020496.01.T01:five_prime_utr;Parent=MsG0480020496.01.T01
Chr4 CDS 42444723 42444783 42444723 ID=MsG0480020496.01.T01:cds;Parent=MsG0480020496.01.T01
Chr4 CDS 42444567 42444645 42444567 ID=MsG0480020496.01.T01:cds;Parent=MsG0480020496.01.T01
Chr4 CDS 42444007 42444244 42444007 ID=MsG0480020496.01.T01:cds;Parent=MsG0480020496.01.T01
Chr4 CDS 42442039 42442134 42442039 ID=MsG0480020496.01.T01:cds;Parent=MsG0480020496.01.T01
Chr4 three_prime_UTR 42442031 42442038 42442031 ID=MsG0480020496.01.T01:three_prime_utr;Parent=MsG0480020496.01.T01
Chr4 three_prime_UTR 42441905 42441964 42441905 ID=MsG0480020496.01.T01:three_prime_utr;Parent=MsG0480020496.01.T01
Chr4 mRNA 42441762 42444982 42441762 ID=MsG0480020496.01.T02;Parent=MsG0480020496.01;Name=MsG0480020496.01.T02;_AED=0.48;_eAED=0.49;_QI=199|0.66|0.75|1|1|1|4|277|157
Chr4 exon 42441762 42442134 42441762 ID=MsG0480020496.01.T02:exon:4536;Parent=MsG0480020496.01.T02
Chr4 five_prime_UTR 42444784 42444982 42444784 ID=MsG0480020496.01.T02:five_prime_utr;Parent=MsG0480020496.01.T02
Chr4 CDS 42444723 42444783 42444723 ID=MsG0480020496.01.T02:cds;Parent=MsG0480020496.01.T02
Chr4 CDS 42444567 42444645 42444567 ID=MsG0480020496.01.T02:cds;Parent=MsG0480020496.01.T02
Chr4 CDS 42444007 42444244 42444007 ID=MsG0480020496.01.T02:cds;Parent=MsG0480020496.01.T02
Chr4 CDS 42442039 42442134 42442039 ID=MsG0480020496.01.T02:cds;Parent=MsG0480020496.01.T02
Chr4 three_prime_UTR 42441762 42442038 42441762 ID=MsG0480020496.01.T02:three_prime_utr;Parent=MsG0480020496.01.T02
Gene Sequence

>MsG0480020496.01.T01

ATGGCAGCAACAACCTTTCCAACCGTCCTAGGAATGGCTGGTGCATCACGTCTCACCTCAGGATTTGTGAAACCTCAAGTGATTGCTAGGAATCCTTTGAAGCAAGCTATGGCACTTGGAAATGGTGGGAGAGTTACATGCTTCCAAAGGGATTGGCTGAGGAGGGATTTCAATGTGATTGGATTTGGGTTGATAGGTTGGTTGGCACCATCAAGCATACCAGCTATAGATGGTAAAAGTCTGACTGGACTTTTCTTTGATAGCATTGGCACTGAACTTGCTCACTTCCCTACTCCTCCTGCTCTTACTTCACCCTTCTGGTTAGTCATTTTCATCACACATCTTATTTTGATTCGTTCATTTTATTTATTTAAGTCGGTTATGGCTGATCTGTTGGCACCTGGGGCTGTTCATCTCTCTCACTTTTGGCCAAATGGTTTCAAAGGAAGGACTGAGGATTACTTTCAGAAATGA

>MsG0480020496.01.T02

ATGGCAGCAACAACCTTTCCAACCGTCCTAGGAATGGCTGGTGCATCACGTCTCACCTCAGGATTTGTGAAACCTCAAGTGATTGCTAGGAATCCTTTGAAGCAAGCTATGGCACTTGGAAATGGTGGGAGAGTTACATGCTTCCAAAGGGATTGGCTGAGGAGGGATTTCAATGTGATTGGATTTGGGTTGATAGGTTGGTTGGCACCATCAAGCATACCAGCTATAGATGGTAAAAGTCTGACTGGACTTTTCTTTGATAGCATTGGCACTGAACTTGCTCACTTCCCTACTCCTCCTGCTCTTACTTCACCCTTCTGGTTAGTCATTTTCATCACACATCTTATTTTGATTCGTTCATTTTATTTATTTAAGTCGGTTATGGCTGATCTGTTGGCACCTGGGGCTGTTCATCTCTCTCACTTTTGGCCAAATGGTTTCAAAGGAAGGACTGAGGATTACTTTCAGAAATGA

Protein sequence

>MsG0480020496.01.T01

MAATTFPTVLGMAGASRLTSGFVKPQVIARNPLKQAMALGNGGRVTCFQRDWLRRDFNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSIGTELAHFPTPPALTSPFWLVIFITHLILIRSFYLFKSVMADLLAPGAVHLSHFWPNGFKGRTEDYFQK*

>MsG0480020496.01.T02

MAATTFPTVLGMAGASRLTSGFVKPQVIARNPLKQAMALGNGGRVTCFQRDWLRRDFNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSIGTELAHFPTPPALTSPFWLVIFITHLILIRSFYLFKSVMADLLAPGAVHLSHFWPNGFKGRTEDYFQK*